Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184700 | XP_003627641.1 | 94.118 | 187 | 5 | 1 | 1 | 181 | 1 | 187 | 1.48e-123 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184700 | G7LCQ0 | 94.118 | 187 | 5 | 1 | 1 | 181 | 1 | 187 | 7.07e-124 | 356 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa1184700 | -0.820216 | 7.710672e-53 | -8.615850e-47 |
| Msa0031340 | Msa1184700 | -0.811906 | 5.537080e-51 | -8.615850e-47 |
| Msa0084380 | Msa1184700 | -0.802467 | 5.534431e-49 | -8.615850e-47 |
| Msa0109900 | Msa1184700 | -0.818462 | 1.935868e-52 | -8.615850e-47 |
| Msa0760130 | Msa1184700 | -0.817590 | 3.047544e-52 | -8.615850e-47 |
| Msa0810220 | Msa1184700 | -0.806500 | 7.983509e-50 | -8.615850e-47 |
| Msa0828850 | Msa1184700 | -0.820537 | 6.507833e-53 | -8.615850e-47 |
| Msa0832340 | Msa1184700 | -0.813196 | 2.893477e-51 | -8.615850e-47 |
| Msa1045200 | Msa1184700 | -0.803440 | 3.483131e-49 | -8.615850e-47 |
| Msa1137570 | Msa1184700 | -0.806794 | 6.920285e-50 | -8.615850e-47 |
| Msa1184700 | Msa1199830 | 0.814852 | 1.247294e-51 | -8.615850e-47 |
| Msa0572480 | Msa1184700 | -0.807355 | 5.264369e-50 | -8.615850e-47 |
| Msa0892080 | Msa1184700 | -0.810616 | 1.054898e-50 | -8.615850e-47 |
| Msa0969520 | Msa1184700 | -0.800487 | 1.408255e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184700 | MtrunA17_Chr8g0350041 | 94.118 | 187 | 5 | 1 | 1 | 181 | 1 | 187 | 1.36e-127 | 356 |
| Msa1184700 | MtrunA17_Chr3g0131191 | 31.538 | 130 | 86 | 2 | 54 | 181 | 27 | 155 | 1.94e-16 | 72.4 |
| Msa1184700 | MtrunA17_Chr3g0131211 | 26.812 | 138 | 101 | 0 | 44 | 181 | 26 | 163 | 3.17e-12 | 61.6 |
| Msa1184700 | MtrunA17_Chr3g0131241 | 30.769 | 117 | 77 | 1 | 53 | 165 | 28 | 144 | 4.57e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1184700 | AT3G61200.1 | 44.022 | 184 | 88 | 4 | 1 | 181 | 17 | 188 | 2.69e-47 | 153 |
| Msa1184700 | AT1G04290.1 | 33.858 | 127 | 83 | 1 | 55 | 181 | 30 | 155 | 1.46e-18 | 78.6 |
Find 60 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTGAAGAAAACTGGAAATT+TGG | 0.143223 | 8_1:+20605033 | Msa1184700:CDS |
| ATTATGATCACTTAGCTTTC+AGG | 0.143523 | 8_1:+20605099 | Msa1184700:exon |
| AAACAAGAACTCACATTTAT+TGG | 0.197001 | 8_1:-20603938 | None:intergenic |
| TTGCTATTACATACATTAAA+TGG | 0.211869 | 8_1:-20605135 | None:intergenic |
| CCAATTGTTTGTTAAGCTAA+TGG | 0.230179 | 8_1:+20602482 | Msa1184700:CDS |
| ACGTGGTTTGGGTCAACTTC+TGG | 0.253027 | 8_1:-20602450 | None:intergenic |
| CAATTGTTTGTTAAGCTAAT+GGG | 0.333123 | 8_1:+20602483 | Msa1184700:CDS |
| AGTTGACCCAAACCACGTTT+TGG | 0.339624 | 8_1:+20602455 | Msa1184700:CDS |
| TGGGTTTCCAAAACGTGGTT+TGG | 0.346985 | 8_1:-20602462 | None:intergenic |
| CCATTAGCTTAACAAACAAT+TGG | 0.352275 | 8_1:-20602482 | None:intergenic |
| GAATTTAAACTGAAGAAAAC+TGG | 0.369097 | 8_1:+20605025 | Msa1184700:CDS |
| AGCCACGGCGGCGGTGGTGG+TGG | 0.373284 | 8_1:-20602403 | None:intergenic |
| TTCAGCCACGGCGGCGGTGG+TGG | 0.384955 | 8_1:-20602406 | None:intergenic |
| AAAGCTAAGTGATCATAATC+TGG | 0.396135 | 8_1:-20605095 | None:intergenic |
| CACGGCGGCGGTGGTGGTGG+AGG | 0.402136 | 8_1:-20602400 | None:intergenic |
| TGGAGGCGCTGTTGGTTCCT+TGG | 0.404570 | 8_1:+20603820 | Msa1184700:CDS |
| GGGTTTCCAAAACGTGGTTT+GGG | 0.415006 | 8_1:-20602461 | None:intergenic |
| AGTGATCATAATCTGGAAAC+TGG | 0.415696 | 8_1:-20605088 | None:intergenic |
| TTTAATGTTGGAAAATGTAA+AGG | 0.417354 | 8_1:+20605426 | Msa1184700:three_prime_UTR |
| TTAATGTTGGAAAATGTAAA+GGG | 0.419980 | 8_1:+20605427 | Msa1184700:three_prime_UTR |
| GAAGAGGAGGTTACACAGAT+AGG | 0.428504 | 8_1:-20602630 | None:intergenic |
| CATTAGCTTAACAAACAATT+GGG | 0.431289 | 8_1:-20602481 | None:intergenic |
| AAATGTACTTTAAATTCATC+AGG | 0.432168 | 8_1:+20605157 | Msa1184700:three_prime_UTR |
| GGTGGTGGTGGAGGAAGGTT+TGG | 0.432348 | 8_1:-20602391 | None:intergenic |
| TTTGTTAAGCTAATGGGTAT+TGG | 0.437940 | 8_1:+20602489 | Msa1184700:CDS |
| ATTAGCATTTCTTACCTCTC+TGG | 0.437967 | 8_1:+20603911 | Msa1184700:CDS |
| AGTTTCAGCCACGGCGGCGG+TGG | 0.450804 | 8_1:-20602409 | None:intergenic |
| GGAAACTGGCATGTTATAGA+AGG | 0.455985 | 8_1:-20605074 | None:intergenic |
| ACAAGATAGAATTGTATTGT+AGG | 0.458189 | 8_1:+20605383 | Msa1184700:three_prime_UTR |
| GGTTACACAGATAGGTGGTT+TGG | 0.458834 | 8_1:-20602622 | None:intergenic |
| TTGACAGGACATAACATTAC+CGG | 0.459858 | 8_1:+20605360 | Msa1184700:three_prime_UTR |
| GCGGCGGTGGTGGTGGAGGA+AGG | 0.478436 | 8_1:-20602396 | None:intergenic |
| TATCCGAAGTTTATGACTTG+TGG | 0.482808 | 8_1:+20605284 | Msa1184700:three_prime_UTR |
| CAATACAATTCTATCTTGTC+CGG | 0.490525 | 8_1:-20605379 | None:intergenic |
| TGATATTCAATGCAGTTGAC+AGG | 0.499749 | 8_1:+20605345 | Msa1184700:three_prime_UTR |
| GCTAATGGGTATTGGTGCTC+CGG | 0.499807 | 8_1:+20602497 | Msa1184700:CDS |
| ACACTGCATGGAGGCGCTGT+TGG | 0.515896 | 8_1:+20603812 | Msa1184700:CDS |
| TGAAGTTTCAGCCACGGCGG+CGG | 0.532526 | 8_1:-20602412 | None:intergenic |
| CTCCACCACCACCGCCGCCG+TGG | 0.538254 | 8_1:+20602401 | Msa1184700:CDS |
| AACTGTAGTTGCTGAGGACA+AGG | 0.541714 | 8_1:+20603871 | Msa1184700:CDS |
| CAAGATAGAATTGTATTGTA+GGG | 0.544228 | 8_1:+20605384 | Msa1184700:three_prime_UTR |
| CGCCGTGGCTGAAACTTCAT+CGG | 0.549975 | 8_1:+20602416 | Msa1184700:CDS |
| CACCGATGAAGTTTCAGCCA+CGG | 0.557991 | 8_1:-20602418 | None:intergenic |
| CCTGAAAACTGTAACACGGA+TGG | 0.559194 | 8_1:+20602522 | Msa1184700:CDS |
| TTGATCAAATTCAACGTGGT+CGG | 0.559420 | 8_1:+20602580 | Msa1184700:CDS |
| TCGGAACTGCAGAATGGCTA+CGG | 0.561606 | 8_1:+20603788 | Msa1184700:intron |
| AATGCCTCTGTGGTGAAAAG+TGG | 0.562162 | 8_1:+20604977 | Msa1184700:CDS |
| CTGAAAACTGTAACACGGAT+GGG | 0.569680 | 8_1:+20602523 | Msa1184700:CDS |
| AATGGCTACGGAACACTGCA+TGG | 0.579610 | 8_1:+20603800 | Msa1184700:CDS |
| AATCCACAAGTCATAAACTT+CGG | 0.591876 | 8_1:-20605287 | None:intergenic |
| ACAATTGGGTTTCCAAAACG+TGG | 0.619057 | 8_1:-20602467 | None:intergenic |
| TGCTAGAACTGTAGTTGCTG+AGG | 0.632646 | 8_1:+20603865 | Msa1184700:CDS |
| AGTTGACAGAACTTCAACCA+AGG | 0.637154 | 8_1:-20603837 | None:intergenic |
| GAGGAGGTTACACAGATAGG+TGG | 0.641808 | 8_1:-20602627 | None:intergenic |
| CATTTATTGGAGTACCAGAG+AGG | 0.679961 | 8_1:-20603925 | None:intergenic |
| CGATGAAGTTTCAGCCACGG+CGG | 0.696763 | 8_1:-20602415 | None:intergenic |
| GGTTCCTGAAAACTGTAACA+CGG | 0.701128 | 8_1:+20602518 | Msa1184700:CDS |
| AGTTGAAGCTAATGCCTCTG+TGG | 0.705039 | 8_1:+20604967 | Msa1184700:CDS |
| GGCTACGGAACACTGCATGG+AGG | 0.770445 | 8_1:+20603803 | Msa1184700:CDS |
| AAAGTTGATCAAATTCAACG+TGG | 0.815769 | 8_1:+20602576 | Msa1184700:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATTGAAGAAAATA+GGG | + | chr8_1:20603079-20603098 | Msa1184700:intron | 10.0% |
| !!! | ATTCTTTGTTTATTGTTTAA+GGG | + | chr8_1:20602718-20602737 | Msa1184700:intron | 15.0% |
| !! | TTAAAATAAACTAATCCAAA+CGG | + | chr8_1:20603000-20603019 | Msa1184700:intron | 15.0% |
| !!! | CTATTTTCTTCAATTATTAT+TGG | - | chr8_1:20603080-20603099 | None:intergenic | 15.0% |
| !! | CAATAATAATTGAAGAAAAT+AGG | + | chr8_1:20603078-20603097 | Msa1184700:intron | 15.0% |
| !! | ATAATAATTGAAGAAAATAG+GGG | + | chr8_1:20603080-20603099 | Msa1184700:intron | 15.0% |
| !! | GAAAGAATATATTCTAATAT+AGG | - | chr8_1:20604088-20604107 | None:intergenic | 15.0% |
| !! | TTTCATATATGTTAGATAAA+AGG | + | chr8_1:20604258-20604277 | Msa1184700:intron | 15.0% |
| !!! | TTTTTTTTTTTGTGCGAAAT+GGG | - | chr8_1:20602349-20602368 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTGTGCGAAA+TGG | - | chr8_1:20602350-20602369 | None:intergenic | 20.0% |
| !! | AAAAAAAAACTCAACAATCA+TGG | + | chr8_1:20602365-20602384 | Msa1184700:exon | 20.0% |
| !!! | GATTCTTTGTTTATTGTTTA+AGG | + | chr8_1:20602717-20602736 | Msa1184700:intron | 20.0% |
| !! | TAAAATAAACTAATCCAAAC+GGG | + | chr8_1:20603001-20603020 | Msa1184700:intron | 20.0% |
| !! | TTGAATGTAATTATATGTGT+CGG | + | chr8_1:20603106-20603125 | Msa1184700:intron | 20.0% |
| !! | ATTCATATAATTATGAAGAG+CGG | + | chr8_1:20603214-20603233 | Msa1184700:intron | 20.0% |
| !! | ATACATAACAATAATGTGTA+TGG | - | chr8_1:20604055-20604074 | None:intergenic | 20.0% |
| !! | ATATATTCTAATATAGGTGA+AGG | - | chr8_1:20604082-20604101 | None:intergenic | 20.0% |
| !!! | AAAGCTATTGTTTTTTTGAA+GGG | - | chr8_1:20604787-20604806 | None:intergenic | 20.0% |
| !!! | AAAAGCTATTGTTTTTTTGA+AGG | - | chr8_1:20604788-20604807 | None:intergenic | 20.0% |
| !! | GATAGCGAAAAAAAAAATTA+AGG | - | chr8_1:20604848-20604867 | None:intergenic | 20.0% |
| !!! | TTGCTATTACATACATTAAA+TGG | - | chr8_1:20605138-20605157 | None:intergenic | 20.0% |
| !! | AAATGTACTTTAAATTCATC+AGG | + | chr8_1:20605157-20605176 | Msa1184700:three_prime_UTR | 20.0% |
| !! | TTTAATGTTGGAAAATGTAA+AGG | + | chr8_1:20605426-20605445 | Msa1184700:three_prime_UTR | 20.0% |
| !! | TTAATGTTGGAAAATGTAAA+GGG | + | chr8_1:20605427-20605446 | Msa1184700:three_prime_UTR | 20.0% |
| !! | CATTAGCTTAACAAACAATT+GGG | - | chr8_1:20602484-20602503 | None:intergenic | 25.0% |
| !! | CAATTGTTTGTTAAGCTAAT+GGG | + | chr8_1:20602483-20602502 | Msa1184700:CDS | 25.0% |
| ! | AAAATGAAAGAAAAGAGAAG+AGG | - | chr8_1:20602649-20602668 | None:intergenic | 25.0% |
| !!! | TGTTTAAGGGTTTTGTTAAT+TGG | + | chr8_1:20602731-20602750 | Msa1184700:intron | 25.0% |
| !!! | GTTTAAGGGTTTTGTTAATT+GGG | + | chr8_1:20602732-20602751 | Msa1184700:intron | 25.0% |
| !!! | CTATACACACTTTATTTTGA+AGG | - | chr8_1:20603150-20603169 | None:intergenic | 25.0% |
| ! | CTTCAAAATAAAGTGTGTAT+AGG | + | chr8_1:20603148-20603167 | Msa1184700:intron | 25.0% |
| ! | GTAAACTAGTAAAGAATACA+TGG | - | chr8_1:20603594-20603613 | None:intergenic | 25.0% |
| ! | ATTCTGTCAATTTGAACTTT+AGG | + | chr8_1:20603628-20603647 | Msa1184700:intron | 25.0% |
| ! | AAACAAGAACTCACATTTAT+TGG | - | chr8_1:20603941-20603960 | None:intergenic | 25.0% |
| ! | TTCACTGTATGTTAATATGA+AGG | + | chr8_1:20603975-20603994 | Msa1184700:intron | 25.0% |
| !!! | TCAATCTTTAGAGTTTAGAA+TGG | + | chr8_1:20604289-20604308 | Msa1184700:intron | 25.0% |
| !! | ATTAGGATCGATCATTTTAT+AGG | + | chr8_1:20604462-20604481 | Msa1184700:intron | 25.0% |
| ! | TTTCGATACTATAAACTACA+GGG | - | chr8_1:20604903-20604922 | None:intergenic | 25.0% |
| ! | ATTTCGATACTATAAACTAC+AGG | - | chr8_1:20604904-20604923 | None:intergenic | 25.0% |
| ! | GAATTTAAACTGAAGAAAAC+TGG | + | chr8_1:20605025-20605044 | Msa1184700:CDS | 25.0% |
| ! | ACAAGATAGAATTGTATTGT+AGG | + | chr8_1:20605383-20605402 | Msa1184700:three_prime_UTR | 25.0% |
| ! | CAAGATAGAATTGTATTGTA+GGG | + | chr8_1:20605384-20605403 | Msa1184700:three_prime_UTR | 25.0% |
| ! | CCATTAGCTTAACAAACAAT+TGG | - | chr8_1:20602485-20602504 | None:intergenic | 30.0% |
| ! | CCAATTGTTTGTTAAGCTAA+TGG | + | chr8_1:20602482-20602501 | Msa1184700:CDS | 30.0% |
| ! | TTTGTTAAGCTAATGGGTAT+TGG | + | chr8_1:20602489-20602508 | Msa1184700:CDS | 30.0% |
| ! | GGTTCTTTGATTCTTTTCTT+CGG | + | chr8_1:20602544-20602563 | Msa1184700:CDS | 30.0% |
| ! | AAAGTTGATCAAATTCAACG+TGG | + | chr8_1:20602576-20602595 | Msa1184700:CDS | 30.0% |
| !! | GTTTTGTTAATTGGGTATGT+GGG | + | chr8_1:20602740-20602759 | Msa1184700:intron | 30.0% |
| AACATTGTTCAACACACAAA+AGG | - | chr8_1:20602820-20602839 | None:intergenic | 30.0% | |
| GTTGAATGAGAAATGTTAGT+AGG | + | chr8_1:20602859-20602878 | Msa1184700:intron | 30.0% | |
| AAAGTTATTAAACACCCGTT+TGG | - | chr8_1:20603018-20603037 | None:intergenic | 30.0% | |
| TTATTGTGTCTTCGATAAGA+AGG | - | chr8_1:20603044-20603063 | None:intergenic | 30.0% | |
| TTGAAATTCAAGATACGACA+CGG | - | chr8_1:20603263-20603282 | None:intergenic | 30.0% | |
| ATATAGGAGTTTGACGAAAA+TGG | + | chr8_1:20603355-20603374 | Msa1184700:intron | 30.0% | |
| ATCTTTCTCACTTTCTTTGT+CGG | + | chr8_1:20603769-20603788 | Msa1184700:intron | 30.0% | |
| ! | AATTACAAAGCGATTTTCAG+AGG | - | chr8_1:20604428-20604447 | None:intergenic | 30.0% |
| CTGAAAATCGCTTTGTAATT+TGG | + | chr8_1:20604428-20604447 | Msa1184700:intron | 30.0% | |
| ! | ATTTGGTTTAGTGTGTGATT+AGG | + | chr8_1:20604445-20604464 | Msa1184700:intron | 30.0% |
| ! | AACTGGTGAGTTATATTTTG+TGG | + | chr8_1:20604509-20604528 | Msa1184700:intron | 30.0% |
| ATTTAGTGACTGCGAAATTA+TGG | - | chr8_1:20604600-20604619 | None:intergenic | 30.0% | |
| ! | TGATGATGCTATGAATTTGT+TGG | + | chr8_1:20604813-20604832 | Msa1184700:intron | 30.0% |
| ACTGAAGAAAACTGGAAATT+TGG | + | chr8_1:20605033-20605052 | Msa1184700:CDS | 30.0% | |
| AAAGCTAAGTGATCATAATC+TGG | - | chr8_1:20605098-20605117 | None:intergenic | 30.0% | |
| ! | ATTATGATCACTTAGCTTTC+AGG | + | chr8_1:20605099-20605118 | Msa1184700:exon | 30.0% |
| AATCCACAAGTCATAAACTT+CGG | - | chr8_1:20605290-20605309 | None:intergenic | 30.0% | |
| CAATACAATTCTATCTTGTC+CGG | - | chr8_1:20605382-20605401 | None:intergenic | 30.0% | |
| TTGATCAAATTCAACGTGGT+CGG | + | chr8_1:20602580-20602599 | Msa1184700:CDS | 35.0% | |
| ATGAAAGAAAAGAGAAGAGG+AGG | - | chr8_1:20602646-20602665 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTTAATTGGGTATG+TGG | + | chr8_1:20602739-20602758 | Msa1184700:intron | 35.0% |
| ! | GTAATTATATGTGTCGGTGT+TGG | + | chr8_1:20603112-20603131 | Msa1184700:intron | 35.0% |
| AAGAGCGGATACTACAAAAT+GGG | + | chr8_1:20603229-20603248 | Msa1184700:intron | 35.0% | |
| TGAAATCCGTATATGTAGCA+CGG | - | chr8_1:20603315-20603334 | None:intergenic | 35.0% | |
| TGCTACATATACGGATTTCA+TGG | + | chr8_1:20603315-20603334 | Msa1184700:intron | 35.0% | |
| GCTACATATACGGATTTCAT+GGG | + | chr8_1:20603316-20603335 | Msa1184700:intron | 35.0% | |
| !! | AGGACAAGGAACTTTTTCTT+GGG | + | chr8_1:20603885-20603904 | Msa1184700:CDS | 35.0% |
| ATTAGCATTTCTTACCTCTC+TGG | + | chr8_1:20603911-20603930 | Msa1184700:CDS | 35.0% | |
| !!! | ATGTGAGTTCTTGTTTTCAC+TGG | + | chr8_1:20603945-20603964 | Msa1184700:intron | 35.0% |
| ATAGATCATTGCATTTCCTC+AGG | - | chr8_1:20604327-20604346 | None:intergenic | 35.0% | |
| ! | GGATCGATCATTTTATAGGA+TGG | + | chr8_1:20604466-20604485 | Msa1184700:intron | 35.0% |
| ! | TGCATTTTATGTGCAAGACT+CGG | + | chr8_1:20604553-20604572 | Msa1184700:intron | 35.0% |
| !! | CTGCATTGACTATTTCTAGA+TGG | + | chr8_1:20604636-20604655 | Msa1184700:intron | 35.0% |
| TAACAACATGTGCAATCTAG+AGG | - | chr8_1:20604670-20604689 | None:intergenic | 35.0% | |
| CTAGATTGCACATGTTGTTA+AGG | + | chr8_1:20604670-20604689 | Msa1184700:intron | 35.0% | |
| GCATATGCATATAGTTCAAG+AGG | - | chr8_1:20604940-20604959 | None:intergenic | 35.0% | |
| CTTGAACTATATGCATATGC+AGG | + | chr8_1:20604940-20604959 | Msa1184700:intron | 35.0% | |
| AGTGATCATAATCTGGAAAC+TGG | - | chr8_1:20605091-20605110 | None:intergenic | 35.0% | |
| TATCCGAAGTTTATGACTTG+TGG | + | chr8_1:20605284-20605303 | Msa1184700:three_prime_UTR | 35.0% | |
| TGATATTCAATGCAGTTGAC+AGG | + | chr8_1:20605345-20605364 | Msa1184700:three_prime_UTR | 35.0% | |
| TTGACAGGACATAACATTAC+CGG | + | chr8_1:20605360-20605379 | Msa1184700:three_prime_UTR | 35.0% | |
| ACAATTGGGTTTCCAAAACG+TGG | - | chr8_1:20602470-20602489 | None:intergenic | 40.0% | |
| !! | GTGTTACAGTTTTCAGGAAC+CGG | - | chr8_1:20602519-20602538 | None:intergenic | 40.0% |
| GGTTCCTGAAAACTGTAACA+CGG | + | chr8_1:20602518-20602537 | Msa1184700:CDS | 40.0% | |
| CTGAAAACTGTAACACGGAT+GGG | + | chr8_1:20602523-20602542 | Msa1184700:CDS | 40.0% | |
| GAAGAGCGGATACTACAAAA+TGG | + | chr8_1:20603228-20603247 | Msa1184700:intron | 40.0% | |
| GAAATCCGTATATGTAGCAC+GGG | - | chr8_1:20603314-20603333 | None:intergenic | 40.0% | |
| !!! | GATTTCATGGGTTTTGAGCT+AGG | + | chr8_1:20603328-20603347 | Msa1184700:intron | 40.0% |
| ! | TTTTGAGCTAGGCTGGATAT+AGG | + | chr8_1:20603339-20603358 | Msa1184700:intron | 40.0% |
| ! | AAAATGGATTCCCTGCAGTA+GGG | + | chr8_1:20603371-20603390 | Msa1184700:intron | 40.0% |
| ! | GAATTTCAAGCTCGGCATTT+TGG | - | chr8_1:20603477-20603496 | None:intergenic | 40.0% |
| GACGATCAGAATTTCAAGCT+CGG | - | chr8_1:20603485-20603504 | None:intergenic | 40.0% | |
| GTATCTTGATCCGACAATCA+CGG | + | chr8_1:20603505-20603524 | Msa1184700:intron | 40.0% | |
| TTCATGATATCTCGACTGCA+TGG | + | chr8_1:20603546-20603565 | Msa1184700:intron | 40.0% | |
| CAGATTCACTTAGACTGAAC+TGG | - | chr8_1:20603665-20603684 | None:intergenic | 40.0% | |
| AATTGTCATGTGATTGTGCG+TGG | + | chr8_1:20603739-20603758 | Msa1184700:intron | 40.0% | |
| AGTTGACAGAACTTCAACCA+AGG | - | chr8_1:20603840-20603859 | None:intergenic | 40.0% | |
| !! | GAGGACAAGGAACTTTTTCT+TGG | + | chr8_1:20603884-20603903 | Msa1184700:CDS | 40.0% |
| !! | GGACAAGGAACTTTTTCTTG+GGG | + | chr8_1:20603886-20603905 | Msa1184700:CDS | 40.0% |
| ! | CATTTATTGGAGTACCAGAG+AGG | - | chr8_1:20603928-20603947 | None:intergenic | 40.0% |
| TTCTAGTCGTAGCTTCGTAA+TGG | + | chr8_1:20603998-20604017 | Msa1184700:intron | 40.0% | |
| TCAATTGGACTTTGAACGTG+TGG | - | chr8_1:20604024-20604043 | None:intergenic | 40.0% | |
| GTTCAAAGTCCAATTGACTG+TGG | + | chr8_1:20604027-20604046 | Msa1184700:intron | 40.0% | |
| TGTATGGAACCACAGTCAAT+TGG | - | chr8_1:20604039-20604058 | None:intergenic | 40.0% | |
| CTTCAAAACGTGCAAAGCAT+CGG | - | chr8_1:20604230-20604249 | None:intergenic | 40.0% | |
| AAGCCATAAAGGACTGTAAC+TGG | + | chr8_1:20604492-20604511 | Msa1184700:intron | 40.0% | |
| TCACCAGTTACAGTCCTTTA+TGG | - | chr8_1:20604498-20604517 | None:intergenic | 40.0% | |
| TTGTGGTTCCTAGACATGAA+CGG | + | chr8_1:20604526-20604545 | Msa1184700:intron | 40.0% | |
| ! | TGCATTTTCCGTTCATGTCT+AGG | - | chr8_1:20604537-20604556 | None:intergenic | 40.0% |
| GAGTAAAGTGCATGTGGTAA+TGG | - | chr8_1:20604870-20604889 | None:intergenic | 40.0% | |
| ACTAGAGAGTAAAGTGCATG+TGG | - | chr8_1:20604876-20604895 | None:intergenic | 40.0% | |
| GGAAACTGGCATGTTATAGA+AGG | - | chr8_1:20605077-20605096 | None:intergenic | 40.0% | |
| ! | AGTTGACCCAAACCACGTTT+TGG | + | chr8_1:20602455-20602474 | Msa1184700:CDS | 45.0% |
| GGGTTTCCAAAACGTGGTTT+GGG | - | chr8_1:20602464-20602483 | None:intergenic | 45.0% | |
| TGGGTTTCCAAAACGTGGTT+TGG | - | chr8_1:20602465-20602484 | None:intergenic | 45.0% | |
| ! | CCATCCGTGTTACAGTTTTC+AGG | - | chr8_1:20602525-20602544 | None:intergenic | 45.0% |
| CCTGAAAACTGTAACACGGA+TGG | + | chr8_1:20602522-20602541 | Msa1184700:CDS | 45.0% | |
| GGTTACACAGATAGGTGGTT+TGG | - | chr8_1:20602625-20602644 | None:intergenic | 45.0% | |
| GAAGAGGAGGTTACACAGAT+AGG | - | chr8_1:20602633-20602652 | None:intergenic | 45.0% | |
| TTGCACCCGTGCTACATATA+CGG | + | chr8_1:20603306-20603325 | Msa1184700:intron | 45.0% | |
| ! | GAAAATGGATTCCCTGCAGT+AGG | + | chr8_1:20603370-20603389 | Msa1184700:intron | 45.0% |
| GATATCCAATCCCTACTGCA+GGG | - | chr8_1:20603384-20603403 | None:intergenic | 45.0% | |
| ACAGTGACTGTGTAAACGCA+TGG | - | chr8_1:20603406-20603425 | None:intergenic | 45.0% | |
| TGCGTTTACACAGTCACTGT+TGG | + | chr8_1:20603406-20603425 | Msa1184700:intron | 45.0% | |
| ATCAGCACATCCGTGATTGT+CGG | - | chr8_1:20603518-20603537 | None:intergenic | 45.0% | |
| TCTTTGTCGGAACTGCAGAA+TGG | + | chr8_1:20603782-20603801 | Msa1184700:intron | 45.0% | |
| TGCTAGAACTGTAGTTGCTG+AGG | + | chr8_1:20603865-20603884 | Msa1184700:CDS | 45.0% | |
| AACTGTAGTTGCTGAGGACA+AGG | + | chr8_1:20603871-20603890 | Msa1184700:CDS | 45.0% | |
| ATGGTTCATTATGCTGCCTG+AGG | + | chr8_1:20604308-20604327 | Msa1184700:intron | 45.0% | |
| ! | GCTGTTTCGAAATGCAACTG+AGG | - | chr8_1:20604350-20604369 | None:intergenic | 45.0% |
| TAGGATGGCTGAAGCCATAA+AGG | + | chr8_1:20604481-20604500 | Msa1184700:intron | 45.0% | |
| AGTTGAAGCTAATGCCTCTG+TGG | + | chr8_1:20604967-20604986 | Msa1184700:CDS | 45.0% | |
| AATGCCTCTGTGGTGAAAAG+TGG | + | chr8_1:20604977-20604996 | Msa1184700:CDS | 45.0% | |
| !! | TCTTCCACTTTTCACCACAG+AGG | - | chr8_1:20604984-20605003 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTTTTAATGT+TGG | + | chr8_1:20605414-20605433 | Msa1184700:three_prime_UTR | 5.0% |
| CACCGATGAAGTTTCAGCCA+CGG | - | chr8_1:20602421-20602440 | None:intergenic | 50.0% | |
| ! | ACGTGGTTTGGGTCAACTTC+TGG | - | chr8_1:20602453-20602472 | None:intergenic | 50.0% |
| !! | GCTAATGGGTATTGGTGCTC+CGG | + | chr8_1:20602497-20602516 | Msa1184700:CDS | 50.0% |
| GAGGAGGTTACACAGATAGG+TGG | - | chr8_1:20602630-20602649 | None:intergenic | 50.0% | |
| !!! | TCATGGGTTTTGAGCTAGGC+TGG | + | chr8_1:20603332-20603351 | Msa1184700:intron | 50.0% |
| GGATATCCAATCCCTACTGC+AGG | - | chr8_1:20603385-20603404 | None:intergenic | 50.0% | |
| TCGGAACTGCAGAATGGCTA+CGG | + | chr8_1:20603788-20603807 | Msa1184700:intron | 50.0% | |
| AATGGCTACGGAACACTGCA+TGG | + | chr8_1:20603800-20603819 | Msa1184700:CDS | 50.0% | |
| GAAACAGCAGAGCAAAGCTG+AGG | + | chr8_1:20604362-20604381 | Msa1184700:intron | 50.0% | |
| CGATGAAGTTTCAGCCACGG+CGG | - | chr8_1:20602418-20602437 | None:intergenic | 55.0% | |
| CGCCGTGGCTGAAACTTCAT+CGG | + | chr8_1:20602416-20602435 | Msa1184700:CDS | 55.0% | |
| GGATTCCCTGCAGTAGGGAT+TGG | + | chr8_1:20603376-20603395 | Msa1184700:intron | 55.0% | |
| !! | GGTGGTGGTGGAGGAAGGTT+TGG | - | chr8_1:20602394-20602413 | None:intergenic | 60.0% |
| TGAAGTTTCAGCCACGGCGG+CGG | - | chr8_1:20602415-20602434 | None:intergenic | 60.0% | |
| GGCTACGGAACACTGCATGG+AGG | + | chr8_1:20603803-20603822 | Msa1184700:CDS | 60.0% | |
| !! | ACACTGCATGGAGGCGCTGT+TGG | + | chr8_1:20603812-20603831 | Msa1184700:CDS | 60.0% |
| !! | TGGAGGCGCTGTTGGTTCCT+TGG | + | chr8_1:20603820-20603839 | Msa1184700:CDS | 60.0% |
| AGTTTCAGCCACGGCGGCGG+TGG | - | chr8_1:20602412-20602431 | None:intergenic | 70.0% | |
| !! | GCGGCGGTGGTGGTGGAGGA+AGG | - | chr8_1:20602399-20602418 | None:intergenic | 75.0% |
| TTCAGCCACGGCGGCGGTGG+TGG | - | chr8_1:20602409-20602428 | None:intergenic | 75.0% | |
| !!! | CACGGCGGCGGTGGTGGTGG+AGG | - | chr8_1:20602403-20602422 | None:intergenic | 80.0% |
| ! | CTCCACCACCACCGCCGCCG+TGG | + | chr8_1:20602401-20602420 | Msa1184700:CDS | 80.0% |
| !! | AGCCACGGCGGCGGTGGTGG+TGG | - | chr8_1:20602406-20602425 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 20602340 | 20605467 | 20602340 | ID=Msa1184700;Name=Msa1184700 |
| chr8_1 | mRNA | 20602340 | 20605467 | 20602340 | ID=Msa1184700-mRNA-1;Parent=Msa1184700;Name=Msa1184700-mRNA-1;_AED=0.03;_eAED=0.03;_QI=44|1|1|1|1|1|3|362|181 |
| chr8_1 | exon | 20602340 | 20602638 | 20602340 | ID=Msa1184700-mRNA-1:exon:7923;Parent=Msa1184700-mRNA-1 |
| chr8_1 | exon | 20603800 | 20603946 | 20603800 | ID=Msa1184700-mRNA-1:exon:7924;Parent=Msa1184700-mRNA-1 |
| chr8_1 | exon | 20604962 | 20605467 | 20604962 | ID=Msa1184700-mRNA-1:exon:7925;Parent=Msa1184700-mRNA-1 |
| chr8_1 | five_prime_UTR | 20602340 | 20602383 | 20602340 | ID=Msa1184700-mRNA-1:five_prime_utr;Parent=Msa1184700-mRNA-1 |
| chr8_1 | CDS | 20602384 | 20602638 | 20602384 | ID=Msa1184700-mRNA-1:cds;Parent=Msa1184700-mRNA-1 |
| chr8_1 | CDS | 20603800 | 20603946 | 20603800 | ID=Msa1184700-mRNA-1:cds;Parent=Msa1184700-mRNA-1 |
| chr8_1 | CDS | 20604962 | 20605105 | 20604962 | ID=Msa1184700-mRNA-1:cds;Parent=Msa1184700-mRNA-1 |
| chr8_1 | three_prime_UTR | 20605106 | 20605467 | 20605106 | ID=Msa1184700-mRNA-1:three_prime_utr;Parent=Msa1184700-mRNA-1 |
| Gene Sequence |
| Protein sequence |
