Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1193340 | GAU48083.1 | 75.431 | 232 | 53 | 2 | 31 | 262 | 41 | 268 | 3.64e-109 | 326 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0052080 | Msa1193340 | 0.800321 | 1.522728e-48 | -8.615850e-47 |
| Msa0710060 | Msa1193340 | 0.892359 | 1.706433e-74 | -8.615850e-47 |
| Msa0710070 | Msa1193340 | 0.969603 | 2.293869e-130 | -8.615850e-47 |
| Msa0820840 | Msa1193340 | 0.805652 | 1.203820e-49 | -8.615850e-47 |
| Msa1193340 | Msa1264020 | 0.802273 | 6.065905e-49 | -8.615850e-47 |
| Msa1193340 | Msa1407640 | -0.805216 | 1.485661e-49 | -8.615850e-47 |
| Msa1193340 | Msa1427760 | 0.841535 | 4.479892e-58 | -8.615850e-47 |
| Msa1193340 | Msa1454290 | -0.813202 | 2.883507e-51 | -8.615850e-47 |
| Msa0538700 | Msa1193340 | 0.841808 | 3.794725e-58 | -8.615850e-47 |
| Msa0861120 | Msa1193340 | 0.802382 | 5.760058e-49 | -8.615850e-47 |
| Msa0930830 | Msa1193340 | -0.808272 | 3.360741e-50 | -8.615850e-47 |
| Msa0970630 | Msa1193340 | -0.811826 | 5.765436e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTATAATTTGAATATTTAT+TGG | 0.149686 | 8_1:-39534061 | None:intergenic |
| ATGATTTGTAGTATCAAATT+TGG | 0.159254 | 8_1:+39534477 | Msa1193340:three_prime_UTR |
| TCACAGTTCTTTGCAATTTC+AGG | 0.167918 | 8_1:+39531310 | Msa1193340:CDS |
| AAATATAGATTTGGATTTAA+TGG | 0.180402 | 8_1:+39534212 | Msa1193340:CDS |
| TATTTCCTCAACACCTAAAA+TGG | 0.217388 | 8_1:-39534385 | None:intergenic |
| AATGCAAAGGGTAGAGTATA+TGG | 0.262241 | 8_1:+39533991 | Msa1193340:CDS |
| GAGAGGTTGAGGCGCGTTTA+AGG | 0.273052 | 8_1:+39534106 | Msa1193340:CDS |
| TTAGTTGATTCTTAGATCCT+TGG | 0.322858 | 8_1:-39532616 | None:intergenic |
| ATTTGCATGTTTAGCAAATA+CGG | 0.348024 | 8_1:-39534193 | None:intergenic |
| TAAACATGCAAATATAGATT+TGG | 0.354681 | 8_1:+39534203 | Msa1193340:CDS |
| ACAAACAATCGATTCCATTA+AGG | 0.358541 | 8_1:+39534149 | Msa1193340:CDS |
| AAAGGTTTGTGACCCCTTCC+TGG | 0.359594 | 8_1:-39532795 | None:intergenic |
| TAGTTGATTCTTAGATCCTT+GGG | 0.378840 | 8_1:-39532615 | None:intergenic |
| ACTAAAGCATGAACTTGAAT+TGG | 0.381714 | 8_1:+39532634 | Msa1193340:CDS |
| TAGAGTATATGGGCTTGGTT+TGG | 0.416967 | 8_1:+39534002 | Msa1193340:CDS |
| ATTAGTGTATCATAATCAAT+AGG | 0.448901 | 8_1:-39533946 | None:intergenic |
| CTAAACAAGTGCAGAACAAA+AGG | 0.449735 | 8_1:+39532726 | Msa1193340:intron |
| TGAGTCTCAACCTCATCCTT+TGG | 0.456749 | 8_1:+39533888 | Msa1193340:CDS |
| TATTGATGGTTTATGAATGT+AGG | 0.459697 | 8_1:+39534315 | Msa1193340:three_prime_UTR |
| ATGTGGAAGAATAATATTGA+TGG | 0.474708 | 8_1:+39534301 | Msa1193340:exon |
| GTCTCAACCTCATCCTTTGG+AGG | 0.479026 | 8_1:+39533891 | Msa1193340:CDS |
| GGATTTAGACGTTGAGCCAC+GGG | 0.479351 | 8_1:-39534040 | None:intergenic |
| CAACCTCATCCTTTGGAGGC+TGG | 0.487170 | 8_1:+39533895 | Msa1193340:CDS |
| CAAGTGCAGAACAAAAGGTT+AGG | 0.488681 | 8_1:+39532731 | Msa1193340:intron |
| AAGGGTAGAGTATATGGGCT+TGG | 0.493623 | 8_1:+39533997 | Msa1193340:CDS |
| TGTATCATAATCAATAGGCT+TGG | 0.504722 | 8_1:-39533941 | None:intergenic |
| GTATCATAATCAATAGGCTT+GGG | 0.509867 | 8_1:-39533940 | None:intergenic |
| TGGTATGAGTGGAGAGGTTG+AGG | 0.514731 | 8_1:+39534095 | Msa1193340:CDS |
| GTATATGGGCTTGGTTTGGA+TGG | 0.514998 | 8_1:+39534006 | Msa1193340:CDS |
| ATGCAAAGGGTAGAGTATAT+GGG | 0.526831 | 8_1:+39533992 | Msa1193340:CDS |
| ACACTAATGATTGAAGCTGT+TGG | 0.537396 | 8_1:+39533961 | Msa1193340:CDS |
| GATGGCAGCATGCGCACCCG+TGG | 0.550034 | 8_1:+39534024 | Msa1193340:CDS |
| CTAATGATTGAAGCTGTTGG+AGG | 0.555236 | 8_1:+39533964 | Msa1193340:CDS |
| TTAAATAGCTCTCCCTTGTG+TGG | 0.555638 | 8_1:-39532761 | None:intergenic |
| TGCAAATGTTGGTGCTGATG+TGG | 0.559498 | 8_1:+39534284 | Msa1193340:CDS |
| TGGATTTAGACGTTGAGCCA+CGG | 0.559998 | 8_1:-39534041 | None:intergenic |
| AGTAATCGTGATTCAGATGT+CGG | 0.565082 | 8_1:+39532578 | Msa1193340:CDS |
| AGTTGATCTCTTATCAACAA+AGG | 0.578886 | 8_1:-39532813 | None:intergenic |
| GGAGGTTCATTGCACACCCA+AGG | 0.595430 | 8_1:+39532599 | Msa1193340:CDS |
| TTACCAGCCTCCAAAGGATG+AGG | 0.600248 | 8_1:-39533898 | None:intergenic |
| CGTGGAAGCAATGCAAATGT+TGG | 0.616233 | 8_1:+39534273 | Msa1193340:CDS |
| TCATCATTACCAGCCTCCAA+AGG | 0.621367 | 8_1:-39533904 | None:intergenic |
| AATTATCTTAAGTAGATGTG+TGG | 0.631134 | 8_1:+39532550 | Msa1193340:intron |
| TGTTGGAGGAAGAAATGCAA+AGG | 0.632509 | 8_1:+39533978 | Msa1193340:CDS |
| GATATTGCACGTGGTATGAG+TGG | 0.632896 | 8_1:+39534084 | Msa1193340:CDS |
| TCTGTTGATAATGCTACTCG+TGG | 0.635589 | 8_1:+39534255 | Msa1193340:CDS |
| GTTGGAGGAAGAAATGCAAA+GGG | 0.639504 | 8_1:+39533979 | Msa1193340:CDS |
| GTTAGGAAGAATTCCACACA+AGG | 0.649819 | 8_1:+39532748 | Msa1193340:CDS |
| AATTATACTGATATTGCACG+TGG | 0.677934 | 8_1:+39534075 | Msa1193340:CDS |
| AATCGTGATTCAGATGTCGG+AGG | 0.698344 | 8_1:+39532581 | Msa1193340:CDS |
| TGCACGTGGTATGAGTGGAG+AGG | 0.729243 | 8_1:+39534089 | Msa1193340:CDS |
| GAGGCTGGTAATGATGAGAG+TGG | 0.750491 | 8_1:+39533910 | Msa1193340:CDS |
| TTAGGAAGAATTCCACACAA+GGG | 0.761441 | 8_1:+39532749 | Msa1193340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTATAATTTGAATATTTAT+TGG | - | chr8_1:39534064-39534083 | None:intergenic | 10.0% |
| !!! | ATTTTTTGATTTTGATGAAA+TGG | + | chr8_1:39531419-39531438 | Msa1193340:intron | 15.0% |
| !!! | TTTTTTGATTTTGATGAAAT+GGG | + | chr8_1:39531420-39531439 | Msa1193340:intron | 15.0% |
| !!! | TTTGTTGAAATTTTGATTTT+TGG | + | chr8_1:39531443-39531462 | Msa1193340:intron | 15.0% |
| !!! | TACAACATTTTTTTTATGAA+GGG | + | chr8_1:39531693-39531712 | Msa1193340:intron | 15.0% |
| !! | TATCATCAAAAAAAAAAATC+TGG | - | chr8_1:39532476-39532495 | None:intergenic | 15.0% |
| !! | AATAACTGAATAAATAAGAT+AGG | - | chr8_1:39533829-39533848 | None:intergenic | 15.0% |
| !! | AAATATAGATTTGGATTTAA+TGG | + | chr8_1:39534212-39534231 | Msa1193340:CDS | 15.0% |
| !!! | ATTAAAACTTTAACCATTTT+AGG | + | chr8_1:39534372-39534391 | Msa1193340:three_prime_UTR | 15.0% |
| !!! | TAATTTCAAGCATTTTTTTG+TGG | - | chr8_1:39531617-39531636 | None:intergenic | 20.0% |
| !!! | GTACAACATTTTTTTTATGA+AGG | + | chr8_1:39531692-39531711 | Msa1193340:intron | 20.0% |
| !!! | GTATTTTTGTTTTCATGTAA+AGG | + | chr8_1:39531806-39531825 | Msa1193340:intron | 20.0% |
| !! | CTTCAATTTATAATCCAAAA+GGG | - | chr8_1:39531869-39531888 | None:intergenic | 20.0% |
| !! | ACTTCAATTTATAATCCAAA+AGG | - | chr8_1:39531870-39531889 | None:intergenic | 20.0% |
| !!! | ACATTTTAGCTTAAAATTAG+TGG | - | chr8_1:39531953-39531972 | None:intergenic | 20.0% |
| !!! | ACATTTTTTCTTTTGTTCAT+TGG | - | chr8_1:39532101-39532120 | None:intergenic | 20.0% |
| !!! | TAATCTGCAAATTGATAATT+TGG | + | chr8_1:39532214-39532233 | Msa1193340:intron | 20.0% |
| !! | CATTGTATGAGAAAATAAAA+TGG | - | chr8_1:39532502-39532521 | None:intergenic | 20.0% |
| !! | ATGCATATAATATCAACAAT+TGG | + | chr8_1:39533094-39533113 | Msa1193340:intron | 20.0% |
| !! | TGAATATCAATGAAATCAAA+GGG | - | chr8_1:39533330-39533349 | None:intergenic | 20.0% |
| !! | ATGAATATCAATGAAATCAA+AGG | - | chr8_1:39533331-39533350 | None:intergenic | 20.0% |
| !! | TTGTTTGACAGATATATTAT+CGG | + | chr8_1:39533544-39533563 | Msa1193340:intron | 20.0% |
| !! | ATTAGTGTATCATAATCAAT+AGG | - | chr8_1:39533949-39533968 | None:intergenic | 20.0% |
| !! | TAAACATGCAAATATAGATT+TGG | + | chr8_1:39534203-39534222 | Msa1193340:CDS | 20.0% |
| !!! | GAAACAATTTGATATTTTGT+AGG | + | chr8_1:39534337-39534356 | Msa1193340:three_prime_UTR | 20.0% |
| !!! | ATGATTTGTAGTATCAAATT+TGG | + | chr8_1:39534477-39534496 | Msa1193340:three_prime_UTR | 20.0% |
| !!! | AGAGTTTGTATTTTTGTTTC+TGG | + | chr8_1:39531470-39531489 | Msa1193340:intron | 25.0% |
| !! | TGCATTTTCTGTCAAATTAA+AGG | - | chr8_1:39531505-39531524 | None:intergenic | 25.0% |
| ! | CATATCGAGTATAAGTTAAT+AGG | - | chr8_1:39531533-39531552 | None:intergenic | 25.0% |
| ! | CTATTAACTTATACTCGATA+TGG | + | chr8_1:39531531-39531550 | Msa1193340:intron | 25.0% |
| ! | ATATGGATTTGAATGTTTGA+GGG | + | chr8_1:39531548-39531567 | Msa1193340:intron | 25.0% |
| !! | TAATACTGGTGTATGATTTT+AGG | + | chr8_1:39531755-39531774 | Msa1193340:intron | 25.0% |
| !! | TTTAAAACTTTATGGCAAAC+AGG | - | chr8_1:39531905-39531924 | None:intergenic | 25.0% |
| !! | CATGTGCATTTAAAACTTTA+TGG | - | chr8_1:39531913-39531932 | None:intergenic | 25.0% |
| ! | ATATCATTGCATTTATTTGC+TGG | - | chr8_1:39532005-39532024 | None:intergenic | 25.0% |
| !! | CTTTTATGATAGCTAAAAAG+TGG | + | chr8_1:39532127-39532146 | Msa1193340:intron | 25.0% |
| ! | TTCAAAGGGATGTTTATATT+TGG | + | chr8_1:39532310-39532329 | Msa1193340:intron | 25.0% |
| ! | AATTATCTTAAGTAGATGTG+TGG | + | chr8_1:39532550-39532569 | Msa1193340:intron | 25.0% |
| ! | TATTTAAAAAATGTCACACC+AGG | + | chr8_1:39532777-39532796 | Msa1193340:CDS | 25.0% |
| !!! | TTGGCTTCTTTAATTTTACT+TGG | + | chr8_1:39532860-39532879 | Msa1193340:intron | 25.0% |
| !! | AGACTAGTACTTAATCTTTT+GGG | + | chr8_1:39532907-39532926 | Msa1193340:intron | 25.0% |
| ! | GACATAAGAATAAAATTGCA+AGG | - | chr8_1:39533233-39533252 | None:intergenic | 25.0% |
| ! | CAAGAAAATATTGTCTACTA+GGG | + | chr8_1:39533294-39533313 | Msa1193340:intron | 25.0% |
| ! | TTAGTGACATATAGTGAAAA+TGG | + | chr8_1:39533350-39533369 | Msa1193340:intron | 25.0% |
| ! | CAAAAACTGAAGTAGATAAA+AGG | - | chr8_1:39533579-39533598 | None:intergenic | 25.0% |
| !! | CTTTTATCTACTTCAGTTTT+TGG | + | chr8_1:39533577-39533596 | Msa1193340:intron | 25.0% |
| !!! | CTTTTTTGTTATTGCAATAC+TGG | + | chr8_1:39533619-39533638 | Msa1193340:intron | 25.0% |
| ! | TATGAATATAGTAATGTCTG+AGG | + | chr8_1:39533658-39533677 | Msa1193340:intron | 25.0% |
| ! | CATGTATTGCCTTTATAATT+TGG | + | chr8_1:39533726-39533745 | Msa1193340:intron | 25.0% |
| !!! | CCTTTATAATTTGGTTTGTT+GGG | + | chr8_1:39533735-39533754 | Msa1193340:intron | 25.0% |
| ! | ATTTGCATGTTTAGCAAATA+CGG | - | chr8_1:39534196-39534215 | None:intergenic | 25.0% |
| ! | ATGTGGAAGAATAATATTGA+TGG | + | chr8_1:39534301-39534320 | Msa1193340:exon | 25.0% |
| !! | TATTGATGGTTTATGAATGT+AGG | + | chr8_1:39534315-39534334 | Msa1193340:three_prime_UTR | 25.0% |
| !!! | TTGATATCTGCTGTTATTTT+TGG | + | chr8_1:39534410-39534429 | Msa1193340:three_prime_UTR | 25.0% |
| AGAGAATATCACCTATATTG+AGG | - | chr8_1:39531367-39531386 | None:intergenic | 30.0% | |
| GATATGGATTTGAATGTTTG+AGG | + | chr8_1:39531547-39531566 | Msa1193340:intron | 30.0% | |
| ! | GAGTAGTTTGAAATCAATGA+GGG | + | chr8_1:39531715-39531734 | Msa1193340:intron | 30.0% |
| ATTAAGATACAGTAGTGAGA+GGG | + | chr8_1:39532028-39532047 | Msa1193340:intron | 30.0% | |
| TTAATGTTTCTTCGAAGAAG+AGG | - | chr8_1:39532277-39532296 | None:intergenic | 30.0% | |
| AAAGGGATGTTTATATTTGG+TGG | + | chr8_1:39532313-39532332 | Msa1193340:intron | 30.0% | |
| !!! | TTTTAGTTCATGTACTTGCA+AGG | + | chr8_1:39532390-39532409 | Msa1193340:intron | 30.0% |
| ! | TAGTTGATTCTTAGATCCTT+GGG | - | chr8_1:39532618-39532637 | None:intergenic | 30.0% |
| ! | TTAGTTGATTCTTAGATCCT+TGG | - | chr8_1:39532619-39532638 | None:intergenic | 30.0% |
| ACTAAAGCATGAACTTGAAT+TGG | + | chr8_1:39532634-39532653 | Msa1193340:CDS | 30.0% | |
| AGTTGATCTCTTATCAACAA+AGG | - | chr8_1:39532816-39532835 | None:intergenic | 30.0% | |
| ATATGTGAGTATCAAGCTAT+TGG | + | chr8_1:39532841-39532860 | Msa1193340:intron | 30.0% | |
| !! | TTTACTTGGTTTGTGTAAGT+AGG | + | chr8_1:39532874-39532893 | Msa1193340:intron | 30.0% |
| ! | GAGACTAGTACTTAATCTTT+TGG | + | chr8_1:39532906-39532925 | Msa1193340:intron | 30.0% |
| !! | TTAATCTTTTGGGTCTGTTT+TGG | + | chr8_1:39532917-39532936 | Msa1193340:intron | 30.0% |
| !! | TGAGATTTTGAGTATGAGAA+TGG | - | chr8_1:39532959-39532978 | None:intergenic | 30.0% |
| TTTGCACCAATTGCTATATT+CGG | - | chr8_1:39532987-39533006 | None:intergenic | 30.0% | |
| ATAAATCCATCCAAAAGTCA+AGG | - | chr8_1:39533206-39533225 | None:intergenic | 30.0% | |
| ATATACCTCTCAGATTCATT+GGG | - | chr8_1:39533264-39533283 | None:intergenic | 30.0% | |
| ! | CCTAGTAGACAATATTTTCT+TGG | - | chr8_1:39533296-39533315 | None:intergenic | 30.0% |
| CCAAGAAAATATTGTCTACT+AGG | + | chr8_1:39533293-39533312 | Msa1193340:intron | 30.0% | |
| GAAAAAATTCACAATGCCTA+CGG | + | chr8_1:39533465-39533484 | Msa1193340:intron | 30.0% | |
| AGAAAAAATAAACAGACCGT+AGG | - | chr8_1:39533484-39533503 | None:intergenic | 30.0% | |
| !!! | TTTTGGCTTGCATTTATGTT+TGG | + | chr8_1:39533594-39533613 | Msa1193340:intron | 30.0% |
| !!! | TTTTGTTATTGCAATACTGG+TGG | + | chr8_1:39533622-39533641 | Msa1193340:intron | 30.0% |
| !! | GCCTTTATAATTTGGTTTGT+TGG | + | chr8_1:39533734-39533753 | Msa1193340:intron | 30.0% |
| CCCAACAAACCAAATTATAA+AGG | - | chr8_1:39533738-39533757 | None:intergenic | 30.0% | |
| TTTGTTGGGATGTTCTATTT+AGG | + | chr8_1:39533749-39533768 | Msa1193340:intron | 30.0% | |
| TTAAGAAGGCAAATTAAGGA+GGG | - | chr8_1:39533789-39533808 | None:intergenic | 30.0% | |
| TTTAAGAAGGCAAATTAAGG+AGG | - | chr8_1:39533790-39533809 | None:intergenic | 30.0% | |
| CAGTTTAAGAAGGCAAATTA+AGG | - | chr8_1:39533793-39533812 | None:intergenic | 30.0% | |
| GTATCATAATCAATAGGCTT+GGG | - | chr8_1:39533943-39533962 | None:intergenic | 30.0% | |
| TGTATCATAATCAATAGGCT+TGG | - | chr8_1:39533944-39533963 | None:intergenic | 30.0% | |
| AATTATACTGATATTGCACG+TGG | + | chr8_1:39534075-39534094 | Msa1193340:CDS | 30.0% | |
| ! | ACAAACAATCGATTCCATTA+AGG | + | chr8_1:39534149-39534168 | Msa1193340:CDS | 30.0% |
| !! | TTTAACCATTTTAGGTGTTG+AGG | + | chr8_1:39534380-39534399 | Msa1193340:three_prime_UTR | 30.0% |
| TATTTCCTCAACACCTAAAA+TGG | - | chr8_1:39534388-39534407 | None:intergenic | 30.0% | |
| !!! | TATCTGCTGTTATTTTTGGA+TGG | + | chr8_1:39534414-39534433 | Msa1193340:three_prime_UTR | 30.0% |
| TCACAGTTCTTTGCAATTTC+AGG | + | chr8_1:39531310-39531329 | Msa1193340:CDS | 35.0% | |
| !! | GTTCTTTGCAATTTCAGGTT+TGG | + | chr8_1:39531315-39531334 | Msa1193340:intron | 35.0% |
| TCAGCTTCATTCCTCAATAT+AGG | + | chr8_1:39531353-39531372 | Msa1193340:intron | 35.0% | |
| ! | GGAGTAGTTTGAAATCAATG+AGG | + | chr8_1:39531714-39531733 | Msa1193340:intron | 35.0% |
| ! | GCTTTTCTACAATAATGCCT+TGG | + | chr8_1:39531839-39531858 | Msa1193340:intron | 35.0% |
| GATTAAGATACAGTAGTGAG+AGG | + | chr8_1:39532027-39532046 | Msa1193340:intron | 35.0% | |
| TTAAGATACAGTAGTGAGAG+GGG | + | chr8_1:39532029-39532048 | Msa1193340:intron | 35.0% | |
| GACTGCAGCAAAAATTAAAG+AGG | - | chr8_1:39532157-39532176 | None:intergenic | 35.0% | |
| !! | TGCAGTTGATTTGCATACAT+TGG | + | chr8_1:39532180-39532199 | Msa1193340:intron | 35.0% |
| AATCTGCTGCATAGTTTCAA+AGG | + | chr8_1:39532295-39532314 | Msa1193340:intron | 35.0% | |
| ATCTGCTGCATAGTTTCAAA+GGG | + | chr8_1:39532296-39532315 | Msa1193340:intron | 35.0% | |
| ! | GATGTTTATATTTGGTGGTC+TGG | + | chr8_1:39532318-39532337 | Msa1193340:intron | 35.0% |
| ! | TTATATTTGGTGGTCTGGTT+TGG | + | chr8_1:39532323-39532342 | Msa1193340:intron | 35.0% |
| AGTAATCGTGATTCAGATGT+CGG | + | chr8_1:39532578-39532597 | Msa1193340:CDS | 35.0% | |
| CTAAACAAGTGCAGAACAAA+AGG | + | chr8_1:39532726-39532745 | Msa1193340:intron | 35.0% | |
| TTAGGAAGAATTCCACACAA+GGG | + | chr8_1:39532749-39532768 | Msa1193340:CDS | 35.0% | |
| TAAAAAATGTCACACCAGGA+AGG | + | chr8_1:39532781-39532800 | Msa1193340:CDS | 35.0% | |
| AAAAAATGTCACACCAGGAA+GGG | + | chr8_1:39532782-39532801 | Msa1193340:CDS | 35.0% | |
| ACATCTCCGAATATAGCAAT+TGG | + | chr8_1:39532978-39532997 | Msa1193340:intron | 35.0% | |
| GAATATAGCAATTGGTGCAA+AGG | + | chr8_1:39532986-39533005 | Msa1193340:intron | 35.0% | |
| GATGCATACAAACTCTACTT+TGG | + | chr8_1:39533139-39533158 | Msa1193340:intron | 35.0% | |
| ! | TGTCTTTTGTCCTTGACTTT+TGG | + | chr8_1:39533193-39533212 | Msa1193340:intron | 35.0% |
| ! | TTTTGTCCTTGACTTTTGGA+TGG | + | chr8_1:39533197-39533216 | Msa1193340:intron | 35.0% |
| TCAGATTCATTGGGGAAAAA+TGG | - | chr8_1:39533255-39533274 | None:intergenic | 35.0% | |
| TATACCTCTCAGATTCATTG+GGG | - | chr8_1:39533263-39533282 | None:intergenic | 35.0% | |
| GATATACCTCTCAGATTCAT+TGG | - | chr8_1:39533265-39533284 | None:intergenic | 35.0% | |
| !! | ATTGTCTACTAGGGTGTTTT+TGG | + | chr8_1:39533303-39533322 | Msa1193340:intron | 35.0% |
| AGATATATTATCGGCAACTG+TGG | + | chr8_1:39533553-39533572 | Msa1193340:intron | 35.0% | |
| TTATTGCAATACTGGTGGTT+TGG | + | chr8_1:39533627-39533646 | Msa1193340:intron | 35.0% | |
| !! | GTAATCGAGTGACTTGTTAT+AGG | + | chr8_1:39533700-39533719 | Msa1193340:intron | 35.0% |
| ACAAGCAACACAGTTTAAGA+AGG | - | chr8_1:39533803-39533822 | None:intergenic | 35.0% | |
| ACACTAATGATTGAAGCTGT+TGG | + | chr8_1:39533961-39533980 | Msa1193340:CDS | 35.0% | |
| AATGCAAAGGGTAGAGTATA+TGG | + | chr8_1:39533991-39534010 | Msa1193340:CDS | 35.0% | |
| ATGCAAAGGGTAGAGTATAT+GGG | + | chr8_1:39533992-39534011 | Msa1193340:CDS | 35.0% | |
| !!! | TTTGTTTTGACGAGCCTTAA+TGG | - | chr8_1:39534166-39534185 | None:intergenic | 35.0% |
| GGAATGAAGCTGAGAAAGAA+AGG | - | chr8_1:39531346-39531365 | None:intergenic | 40.0% | |
| GAATGTTTGAGGGAAGAAAG+AGG | + | chr8_1:39531558-39531577 | Msa1193340:intron | 40.0% | |
| CAACATCCAAAGCGTAATAC+TGG | + | chr8_1:39531741-39531760 | Msa1193340:intron | 40.0% | |
| CATACACCAGTATTACGCTT+TGG | - | chr8_1:39531750-39531769 | None:intergenic | 40.0% | |
| TAATCCAAAAGGGACAACCA+AGG | - | chr8_1:39531859-39531878 | None:intergenic | 40.0% | |
| TCTTCGAAGAAGAGGAATAG+AGG | - | chr8_1:39532269-39532288 | None:intergenic | 40.0% | |
| ATGTACTTGCAAGGAAGTTG+TGG | + | chr8_1:39532399-39532418 | Msa1193340:intron | 40.0% | |
| CAAGTGCAGAACAAAAGGTT+AGG | + | chr8_1:39532731-39532750 | Msa1193340:intron | 40.0% | |
| GTTAGGAAGAATTCCACACA+AGG | + | chr8_1:39532748-39532767 | Msa1193340:CDS | 40.0% | |
| TTAAATAGCTCTCCCTTGTG+TGG | - | chr8_1:39532764-39532783 | None:intergenic | 40.0% | |
| AAAAATGTCACACCAGGAAG+GGG | + | chr8_1:39532783-39532802 | Msa1193340:CDS | 40.0% | |
| ! | TTTTCCCCAATGAATCTGAG+AGG | + | chr8_1:39533256-39533275 | Msa1193340:intron | 40.0% |
| CTAATGATTGAAGCTGTTGG+AGG | + | chr8_1:39533964-39533983 | Msa1193340:CDS | 40.0% | |
| TGTTGGAGGAAGAAATGCAA+AGG | + | chr8_1:39533978-39533997 | Msa1193340:CDS | 40.0% | |
| GTTGGAGGAAGAAATGCAAA+GGG | + | chr8_1:39533979-39533998 | Msa1193340:CDS | 40.0% | |
| ! | TAGAGTATATGGGCTTGGTT+TGG | + | chr8_1:39534002-39534021 | Msa1193340:CDS | 40.0% |
| !! | TCTGTTGATAATGCTACTCG+TGG | + | chr8_1:39534255-39534274 | Msa1193340:CDS | 40.0% |
| ! | CTGGTGTATGATTTTAGGCG+TGG | + | chr8_1:39531760-39531779 | Msa1193340:intron | 45.0% |
| ! | AATGCCTTGGTTGTCCCTTT+TGG | + | chr8_1:39531852-39531871 | Msa1193340:intron | 45.0% |
| !! | GTCTGGTTTGGTTGTTCTGT+AGG | + | chr8_1:39532335-39532354 | Msa1193340:intron | 45.0% |
| AATCGTGATTCAGATGTCGG+AGG | + | chr8_1:39532581-39532600 | Msa1193340:CDS | 45.0% | |
| TGAGTCTCAACCTCATCCTT+TGG | + | chr8_1:39533888-39533907 | Msa1193340:CDS | 45.0% | |
| TCATCATTACCAGCCTCCAA+AGG | - | chr8_1:39533907-39533926 | None:intergenic | 45.0% | |
| AAGGGTAGAGTATATGGGCT+TGG | + | chr8_1:39533997-39534016 | Msa1193340:CDS | 45.0% | |
| !! | GTATATGGGCTTGGTTTGGA+TGG | + | chr8_1:39534006-39534025 | Msa1193340:CDS | 45.0% |
| TGGATTTAGACGTTGAGCCA+CGG | - | chr8_1:39534044-39534063 | None:intergenic | 45.0% | |
| GATATTGCACGTGGTATGAG+TGG | + | chr8_1:39534084-39534103 | Msa1193340:CDS | 45.0% | |
| CGTGGAAGCAATGCAAATGT+TGG | + | chr8_1:39534273-39534292 | Msa1193340:CDS | 45.0% | |
| !! | TGCAAATGTTGGTGCTGATG+TGG | + | chr8_1:39534284-39534303 | Msa1193340:CDS | 45.0% |
| AAAGGTTTGTGACCCCTTCC+TGG | - | chr8_1:39532798-39532817 | None:intergenic | 50.0% | |
| GTCTCAACCTCATCCTTTGG+AGG | + | chr8_1:39533891-39533910 | Msa1193340:CDS | 50.0% | |
| TTACCAGCCTCCAAAGGATG+AGG | - | chr8_1:39533901-39533920 | None:intergenic | 50.0% | |
| ! | GAGGCTGGTAATGATGAGAG+TGG | + | chr8_1:39533910-39533929 | Msa1193340:CDS | 50.0% |
| GGATTTAGACGTTGAGCCAC+GGG | - | chr8_1:39534043-39534062 | None:intergenic | 50.0% | |
| TGGTATGAGTGGAGAGGTTG+AGG | + | chr8_1:39534095-39534114 | Msa1193340:CDS | 50.0% | |
| GGAGGTTCATTGCACACCCA+AGG | + | chr8_1:39532599-39532618 | Msa1193340:CDS | 55.0% | |
| ! | CAACCTCATCCTTTGGAGGC+TGG | + | chr8_1:39533895-39533914 | Msa1193340:CDS | 55.0% |
| TGCACGTGGTATGAGTGGAG+AGG | + | chr8_1:39534089-39534108 | Msa1193340:CDS | 55.0% | |
| GAGAGGTTGAGGCGCGTTTA+AGG | + | chr8_1:39534106-39534125 | Msa1193340:CDS | 55.0% | |
| GATGGCAGCATGCGCACCCG+TGG | + | chr8_1:39534024-39534043 | Msa1193340:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 39531171 | 39534555 | 39531171 | ID=Msa1193340;Name=Msa1193340 |
| chr8_1 | mRNA | 39531171 | 39534555 | 39531171 | ID=Msa1193340-mRNA-1;Parent=Msa1193340;Name=Msa1193340-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|1|0.8|1|0|0.2|5|241|262 |
| chr8_1 | exon | 39531171 | 39531187 | 39531171 | ID=Msa1193340-mRNA-1:exon:12960;Parent=Msa1193340-mRNA-1 |
| chr8_1 | exon | 39531212 | 39531331 | 39531212 | ID=Msa1193340-mRNA-1:exon:12961;Parent=Msa1193340-mRNA-1 |
| chr8_1 | exon | 39532565 | 39532655 | 39532565 | ID=Msa1193340-mRNA-1:exon:12962;Parent=Msa1193340-mRNA-1 |
| chr8_1 | exon | 39532740 | 39532844 | 39532740 | ID=Msa1193340-mRNA-1:exon:12963;Parent=Msa1193340-mRNA-1 |
| chr8_1 | exon | 39533859 | 39534555 | 39533859 | ID=Msa1193340-mRNA-1:exon:12964;Parent=Msa1193340-mRNA-1 |
| chr8_1 | CDS | 39531171 | 39531187 | 39531171 | ID=Msa1193340-mRNA-1:cds;Parent=Msa1193340-mRNA-1 |
| chr8_1 | CDS | 39531212 | 39531331 | 39531212 | ID=Msa1193340-mRNA-1:cds;Parent=Msa1193340-mRNA-1 |
| chr8_1 | CDS | 39532565 | 39532655 | 39532565 | ID=Msa1193340-mRNA-1:cds;Parent=Msa1193340-mRNA-1 |
| chr8_1 | CDS | 39532740 | 39532844 | 39532740 | ID=Msa1193340-mRNA-1:cds;Parent=Msa1193340-mRNA-1 |
| chr8_1 | CDS | 39533859 | 39534314 | 39533859 | ID=Msa1193340-mRNA-1:cds;Parent=Msa1193340-mRNA-1 |
| chr8_1 | three_prime_UTR | 39534315 | 39534555 | 39534315 | ID=Msa1193340-mRNA-1:three_prime_utr;Parent=Msa1193340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
