AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0820840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820840 MtrunA17_Chr5g0441001 98.168 382 7 0 1 382 1 382 0.0 762
Msa0820840 MtrunA17_Chr3g0093291 69.870 385 103 3 1 382 1 375 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0820840 AT3G20320.1 67.013 385 120 4 1 382 1 381 0.0 514
Msa0820840 AT3G20320.3 64.336 286 95 4 1 283 1 282 5.33e-126 364
Msa0820840 AT3G20320.2 64.336 286 95 4 1 283 1 282 5.33e-126 364

Find 122 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCGTGTACTTTCTGAATT+TGG 0.116083 5_3:-58496877 None:intergenic
TTCTGAATTTGGAATTTATT+TGG 0.119827 5_3:-58496866 None:intergenic
AGAATTTCTTAGTGTTTAAT+TGG 0.142646 5_3:+58499676 Msa0820840:three_prime_UTR
CTGGTTCCATTAAGTGATTT+TGG 0.187008 5_3:+58496747 Msa0820840:CDS
TTGGTTTCTGCTCAAGTTAT+TGG 0.216205 5_3:+58499581 Msa0820840:three_prime_UTR
TCGACATTCCTAGACGTATT+TGG 0.229781 5_3:+58496715 Msa0820840:CDS
CCGAACCCAAAATCACTTAA+TGG 0.259393 5_3:-58496753 None:intergenic
AAAATGAAGTCACAGTTTAA+AGG 0.271407 5_3:+58499648 Msa0820840:three_prime_UTR
TCTTAGTTGCTCTCTTCTTT+TGG 0.272872 5_3:+58499903 Msa0820840:three_prime_UTR
TAAGTGTGTGTATGGACTTC+TGG 0.303339 5_3:-58498865 None:intergenic
GTTGCTTGAGAACTAGTATT+TGG 0.318581 5_3:+58499980 Msa0820840:three_prime_UTR
CCCTAGCTTCTGATGATTTG+AGG 0.341669 5_3:+58498262 Msa0820840:CDS
GAATTTCTTAGTGTTTAATT+GGG 0.343733 5_3:+58499677 Msa0820840:three_prime_UTR
GGTTCGGTCGTAATAGTGTC+TGG 0.356449 5_3:+58496769 Msa0820840:CDS
TTTACAGTTTACAGTGTTGA+TGG 0.359029 5_3:-58495420 None:intergenic
CTGTTCTCGTTTCTTCGATT+CGG 0.359881 5_3:+58495350 Msa0820840:five_prime_UTR
ACCTCAACGAATGAGTTCTT+TGG 0.362103 5_3:-58497464 None:intergenic
CCAACTGAAGGTGTCGGAAT+TGG 0.367176 5_3:-58497539 None:intergenic
GATACTATTTGTGCTCAGTA+TGG 0.382900 5_3:+58496827 Msa0820840:CDS
TCTAGATGTTCAACCTTTGT+TGG 0.383759 5_3:+58498182 Msa0820840:CDS
CGCCGCTTTCAATTCGAAAT+CGG 0.390643 5_3:+58496595 Msa0820840:CDS
CTTAAATTCAAATTACCAAC+TGG 0.392520 5_3:+58500006 Msa0820840:three_prime_UTR
GGTAAATATAAGTGTGTGTA+TGG 0.394496 5_3:-58498873 None:intergenic
GCAGAATATTACCTCTGATA+TGG 0.395381 5_3:+58498992 Msa0820840:intron
CAGAAGCTAGGGTAAGGCTT+CGG 0.397566 5_3:-58498251 None:intergenic
CGTAATAGTGTCTGGGAAGG+TGG 0.403648 5_3:+58496777 Msa0820840:CDS
GGGTCACCAAGGAGTAAGTT+TGG 0.410151 5_3:+58497622 Msa0820840:CDS
CCTGTTATATGCTACTTCAC+TGG 0.413187 5_3:-58499099 None:intergenic
CCAGTGAAGTAGCATATAAC+AGG 0.418405 5_3:+58499099 Msa0820840:three_prime_UTR
CAATTAATACATTGCTAAGA+TGG 0.426922 5_3:-58499725 None:intergenic
GGAAGAGAGAGAGAAATCTA+AGG 0.431560 5_3:-58495399 None:intergenic
TCAAACCTCAATGTTCTTCA+AGG 0.432770 5_3:-58498894 None:intergenic
AGGAGTAAGTTTGGATGAAA+TGG 0.434275 5_3:+58497631 Msa0820840:CDS
TGGTTGGGATAGATATTAAG+AGG 0.436953 5_3:-58495269 None:intergenic
GGACGAGATGTAGAGGGAAT+TGG 0.437089 5_3:+58497674 Msa0820840:CDS
TTCGTTGAGGTTAACCAGTC+AGG 0.437205 5_3:+58497476 Msa0820840:CDS
AGAAGCTAGGGTAAGGCTTC+GGG 0.447061 5_3:-58498250 None:intergenic
GTAATAGTGTCTGGGAAGGT+GGG 0.447383 5_3:+58496778 Msa0820840:CDS
TATTGTCAACAGCTACTCAT+TGG 0.447423 5_3:+58497697 Msa0820840:CDS
ATCTAAGGAGCATGAATCAT+AGG 0.458443 5_3:-58495384 None:intergenic
AACTCTCAACTTCCTTCAAT+AGG 0.459217 5_3:-58498224 None:intergenic
GATATTAAGAGGAAAGAAAG+TGG 0.462883 5_3:-58495258 None:intergenic
CTTAGTGTTTAATTGGGGTG+AGG 0.463530 5_3:+58499683 Msa0820840:three_prime_UTR
AATGATGAGAGATGGATTGC+AGG 0.470223 5_3:-58496516 None:intergenic
AGAAGATATAGCTCTAATCT+TGG 0.470549 5_3:-58496628 None:intergenic
CATTAAACTACACTGTTGCA+TGG 0.474864 5_3:-58499770 None:intergenic
CCGTGATAGCGGCCTATTGA+AGG 0.476864 5_3:+58498212 Msa0820840:CDS
TTTCATCCAAACTTACTCCT+TGG 0.476894 5_3:-58497628 None:intergenic
AGTGTCTGGGAAGGTGGGGT+TGG 0.483560 5_3:+58496783 Msa0820840:CDS
CTCAACAGTTCTATCTATCA+AGG 0.484924 5_3:-58496455 None:intergenic
CAAGTTATTGGCGCCATCTG+TGG 0.490797 5_3:+58499593 Msa0820840:three_prime_UTR
AGGTTGGTTTGAAGATGGTC+GGG 0.496868 5_3:+58496490 Msa0820840:exon
CAAGGAGGTTGGTTTGAAGA+TGG 0.498626 5_3:+58496485 Msa0820840:exon
CTCTACATCTCGTCCAAGAC+GGG 0.503075 5_3:-58497666 None:intergenic
TTAAGTTGTGAAAACTGGAT+TGG 0.508380 5_3:+58499954 Msa0820840:three_prime_UTR
TTCGAGTTTGCTCAAGCTTG+TGG 0.510719 5_3:+58496903 Msa0820840:CDS
GATCAGCTCAGCGTTCTCAT+TGG 0.514219 5_3:-58498843 None:intergenic
CAAGCTTGTGGTATAAGCAC+TGG 0.514308 5_3:+58496915 Msa0820840:CDS
GAGGTTGGTTTGAAGATGGT+CGG 0.514964 5_3:+58496489 Msa0820840:exon
TGTTCAACCTTTGTTGGCCG+AGG 0.515090 5_3:+58498188 Msa0820840:CDS
ACCTCAAATCATCAGAAGCT+AGG 0.518321 5_3:-58498263 None:intergenic
AGTAAGTTTGGATGAAATGG+TGG 0.526004 5_3:+58497634 Msa0820840:CDS
TATTTGTGCTCAGTATGGCT+TGG 0.529985 5_3:+58496832 Msa0820840:CDS
CCTCAAATCATCAGAAGCTA+GGG 0.532646 5_3:-58498262 None:intergenic
GACGAAGAATGTGCTAAAGA+AGG 0.539788 5_3:+58497569 Msa0820840:CDS
GTTGTGAAAACTGGATTGGT+TGG 0.540427 5_3:+58499958 Msa0820840:three_prime_UTR
GAATGTGACTACATAGTACT+TGG 0.541180 5_3:+58495314 Msa0820840:five_prime_UTR
GCAAACTTTAATGAGTTGCC+TGG 0.541843 5_3:-58496573 None:intergenic
TTAGCACATTCTTCGTCAAG+AGG 0.542683 5_3:-58497563 None:intergenic
GTGGGAATATACACCCGTCT+TGG 0.543764 5_3:+58497653 Msa0820840:CDS
AGACATGAAGAAACAGAAGT+TGG 0.546046 5_3:-58496540 None:intergenic
GGTGAGTATTTCACAAAGAC+CGG 0.547558 5_3:+58495207 Msa0820840:five_prime_UTR
AATCATCAGAAGCTAGGGTA+AGG 0.550341 5_3:-58498257 None:intergenic
GTTTGCTTCCAAATACGTCT+AGG 0.553355 5_3:-58496723 None:intergenic
TACTTATCAAGAATCTCAGC+AGG 0.558675 5_3:+58499057 Msa0820840:CDS
AATTTCTTAGTGTTTAATTG+GGG 0.559455 5_3:+58499678 Msa0820840:three_prime_UTR
TTGGCCGAGGTCCGTGATAG+CGG 0.559975 5_3:+58498201 Msa0820840:CDS
TTTCCATCAAAAGACCTGAC+TGG 0.561040 5_3:-58497490 None:intergenic
ATTAAACTACACTGTTGCAT+GGG 0.566235 5_3:-58499769 None:intergenic
AATATTACCTCTGATATGGT+AGG 0.567654 5_3:+58498996 Msa0820840:CDS
TCATGTCTGATTTCTCTACC+AGG 0.568622 5_3:+58496555 Msa0820840:CDS
AAGTTGGTAATGATGAGAGA+TGG 0.569327 5_3:-58496524 None:intergenic
ATGTCGAATATAACTGCAAG+TGG 0.569675 5_3:-58496699 None:intergenic
GTGTGATAGAGAAAAGATCA+AGG 0.578775 5_3:+58497601 Msa0820840:CDS
AGAATCAGAGGGGTCACTGT+TGG 0.578987 5_3:+58496948 Msa0820840:CDS
GTCTTTGTGAAATACTCACC+TGG 0.579778 5_3:-58495204 None:intergenic
CCGTCTTGGACGAGATGTAG+AGG 0.580203 5_3:+58497667 Msa0820840:CDS
AAATATTGAGGCAGTTGTCG+AGG 0.580609 5_3:+58497001 Msa0820840:CDS
CCTCTACATCTCGTCCAAGA+CGG 0.581056 5_3:-58497667 None:intergenic
ATTTACCTTGAAGAACATTG+AGG 0.581288 5_3:+58498889 Msa0820840:CDS
ACCAAAGAACTCATTCGTTG+AGG 0.582607 5_3:+58497463 Msa0820840:CDS
ACGTATTTGGAAGCAAACAC+TGG 0.584425 5_3:+58496728 Msa0820840:CDS
GTGTAGTTTAATGTTACAGA+GGG 0.585646 5_3:+58499780 Msa0820840:three_prime_UTR
TTATCGATTCGGAAACCAGT+TGG 0.587944 5_3:-58500021 None:intergenic
CATCACACCTGTGTAAGAAG+TGG 0.588961 5_3:-58497755 None:intergenic
TTCCGATTTCGAATTGAAAG+CGG 0.589796 5_3:-58496597 None:intergenic
ATGATGAGAGATGGATTGCA+GGG 0.591195 5_3:-58496515 None:intergenic
GTTCGGTCGTAATAGTGTCT+GGG 0.600508 5_3:+58496770 Msa0820840:CDS
TAATAGTGTCTGGGAAGGTG+GGG 0.601222 5_3:+58496779 Msa0820840:CDS
GGAACACCTGTGAGAATCAG+AGG 0.601263 5_3:+58496936 Msa0820840:CDS
CCTTCAATAGGCCGCTATCA+CGG 0.604578 5_3:-58498212 None:intergenic
CCAATTCCGACACCTTCAGT+TGG 0.606380 5_3:+58497539 Msa0820840:CDS
GTGACCCCTCTGATTCTCAC+AGG 0.607320 5_3:-58496942 None:intergenic
GAAAAGATCAAGGGTCACCA+AGG 0.610061 5_3:+58497611 Msa0820840:CDS
TCACGGACCTCGGCCAACAA+AGG 0.611021 5_3:-58498195 None:intergenic
CGTCTTGGACGAGATGTAGA+GGG 0.621614 5_3:+58497668 Msa0820840:CDS
TAGGCCGCTATCACGGACCT+CGG 0.624041 5_3:-58498205 None:intergenic
GTAAGTTTGGATGAAATGGT+GGG 0.624337 5_3:+58497635 Msa0820840:CDS
GAACACCTGTGAGAATCAGA+GGG 0.624575 5_3:+58496937 Msa0820840:CDS
AGCAAGACCACTTCTTACAC+AGG 0.628481 5_3:+58497748 Msa0820840:CDS
TCGTCAAGAGGACCAACTGA+AGG 0.630553 5_3:-58497551 None:intergenic
GGTCGTAATAGTGTCTGGGA+AGG 0.632151 5_3:+58496774 Msa0820840:CDS
AGGTTGAACATCTAGAGCCA+TGG 0.633693 5_3:-58498175 None:intergenic
AGAGGACCAACTGAAGGTGT+CGG 0.635149 5_3:-58497545 None:intergenic
TTCCAAATTCAGAAAGTACA+CGG 0.638247 5_3:+58496875 Msa0820840:CDS
CAAGTGACATGATCCACAGA+TGG 0.638519 5_3:-58499606 None:intergenic
TGTGATAGAGAAAAGATCAA+GGG 0.646031 5_3:+58497602 Msa0820840:CDS
AGTGTAGTTTAATGTTACAG+AGG 0.647387 5_3:+58499779 Msa0820840:three_prime_UTR
AGTAAAACCTACCATATCAG+AGG 0.647833 5_3:-58499003 None:intergenic
GATGCCTCAGATGAAAGCCA+TGG 0.676272 5_3:+58498158 Msa0820840:intron
GGTGTCGGAATTGGATCACG+AGG 0.685334 5_3:-58497530 None:intergenic
AACACCTGTGAGAATCAGAG+GGG 0.780299 5_3:+58496938 Msa0820840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTGATTAATGTTATTT+TGG + chr5_3:58495877-58495896 Msa0820840:intron 10.0%
!! AATTCATAAAAATTGAAAAA+GGG - chr5_3:58496356-58496375 None:intergenic 10.0%
!! TGAATTATTAAAAATGATAA+TGG + chr5_3:58498033-58498052 Msa0820840:intron 10.0%
!! TTGTTTATTATATGATGAAA+AGG - chr5_3:58495528-58495547 None:intergenic 15.0%
!! TCCAAGAAAAAATTAAAATT+GGG - chr5_3:58495632-58495651 None:intergenic 15.0%
!! ATCCAAGAAAAAATTAAAAT+TGG - chr5_3:58495633-58495652 None:intergenic 15.0%
!! AAAGTAATTTAACACAAAAA+AGG - chr5_3:58496263-58496282 None:intergenic 15.0%
!! ATTCATAAAAATTGAAAAAG+GGG - chr5_3:58496355-58496374 None:intergenic 15.0%
!! CAATTCATAAAAATTGAAAA+AGG - chr5_3:58496357-58496376 None:intergenic 15.0%
!! AAAATCATATAATCTAAATC+GGG - chr5_3:58496383-58496402 None:intergenic 15.0%
!! CAAAATCATATAATCTAAAT+CGG - chr5_3:58496384-58496403 None:intergenic 15.0%
!! GACATAAAAAAATTATAAGT+TGG - chr5_3:58497216-58497235 None:intergenic 15.0%
!!! ACTTTCATTTTTTTAGTTTT+TGG + chr5_3:58497386-58497405 Msa0820840:intron 15.0%
!!! AATTTCATCTTTTTTCTAAC+TGG + chr5_3:58495482-58495501 Msa0820840:intron 20.0%
!!! ATTTCATCTTTTTTCTAACT+GGG + chr5_3:58495483-58495502 Msa0820840:intron 20.0%
!!! ACCCAATTTTAATTTTTTCT+TGG + chr5_3:58495628-58495647 Msa0820840:intron 20.0%
!!! TTTGAGACTAGAATAATAAT+GGG - chr5_3:58495683-58495702 None:intergenic 20.0%
!!! ATTTGAGACTAGAATAATAA+TGG - chr5_3:58495684-58495703 None:intergenic 20.0%
!! TTAATGTTCACATTATGAAA+AGG + chr5_3:58495732-58495751 Msa0820840:intron 20.0%
!!! ATGAAAAGGTGAAATTTTTA+AGG + chr5_3:58495746-58495765 Msa0820840:intron 20.0%
!!! TGAAAAGGTGAAATTTTTAA+GGG + chr5_3:58495747-58495766 Msa0820840:intron 20.0%
!! TTAATCATAAGCATGATATT+AGG + chr5_3:58495789-58495808 Msa0820840:intron 20.0%
!!! ACTTGTGTTATTAGAATATT+TGG + chr5_3:58495848-58495867 Msa0820840:intron 20.0%
!!! CATCTTAATAGTTTTTCTTA+TGG - chr5_3:58496122-58496141 None:intergenic 20.0%
!!! ACTTTTGTTATCAGATTATT+TGG + chr5_3:58496278-58496297 Msa0820840:intron 20.0%
!!! ATGATTGATTAGTGTTATTT+TGG + chr5_3:58496307-58496326 Msa0820840:intron 20.0%
!!! TAGTGTTATTTTGGTTTATT+TGG + chr5_3:58496316-58496335 Msa0820840:intron 20.0%
!!! TTCTGAATTTGGAATTTATT+TGG - chr5_3:58496869-58496888 None:intergenic 20.0%
!!! CATAGAATTCTTATTTCTAA+GGG - chr5_3:58497995-58498014 None:intergenic 20.0%
!!! ACATAGAATTCTTATTTCTA+AGG - chr5_3:58497996-58498015 None:intergenic 20.0%
!! CAATGATAATTTATATCAAG+AGG - chr5_3:58498407-58498426 None:intergenic 20.0%
!! CTTGATATAAATTATCATTG+AGG + chr5_3:58498407-58498426 Msa0820840:intron 20.0%
!! CATATTAGGATAAACATAAT+AGG - chr5_3:58498661-58498680 None:intergenic 20.0%
!!! AATACACAGAATTTTTGAAT+CGG - chr5_3:58498702-58498721 None:intergenic 20.0%
!!! CTTTTTCTCATGTTTTTTTT+TGG + chr5_3:58498959-58498978 Msa0820840:intron 20.0%
!!! AAGTAGTTTCAAATTCTTTT+TGG - chr5_3:58499042-58499061 None:intergenic 20.0%
!!! TTTAGCTTATTTCCATAAAT+TGG + chr5_3:58499304-58499323 Msa0820840:intron 20.0%
!! AATAAGAAAACACCAATTTA+TGG - chr5_3:58499319-58499338 None:intergenic 20.0%
!! AGAATTTCTTAGTGTTTAAT+TGG + chr5_3:58499676-58499695 Msa0820840:three_prime_UTR 20.0%
!! GAATTTCTTAGTGTTTAATT+GGG + chr5_3:58499677-58499696 Msa0820840:three_prime_UTR 20.0%
!! AATTTCTTAGTGTTTAATTG+GGG + chr5_3:58499678-58499697 Msa0820840:three_prime_UTR 20.0%
!!! CTACTTTTTATTTATCGATT+CGG - chr5_3:58500035-58500054 None:intergenic 20.0%
! GAAATAACAAAAAATTGTCG+CGG - chr5_3:58495235-58495254 None:intergenic 25.0%
!!! ACATTCATTCTGTTTTTGTT+TGG - chr5_3:58495292-58495311 None:intergenic 25.0%
! AAAATGATGTATAGACATGA+AGG - chr5_3:58495584-58495603 None:intergenic 25.0%
! TTGAGACTAGAATAATAATG+GGG - chr5_3:58495682-58495701 None:intergenic 25.0%
! ATAAGCATGATATTAGGATT+TGG + chr5_3:58495795-58495814 Msa0820840:intron 25.0%
!!! ATTAGGATTTGGTTTGTTAT+TGG + chr5_3:58495806-58495825 Msa0820840:intron 25.0%
!! TGAATGTTGATTATGTAGTA+AGG + chr5_3:58496038-58496057 Msa0820840:intron 25.0%
! GAAAAACTATTAAGATGTAG+AGG + chr5_3:58496125-58496144 Msa0820840:intron 25.0%
! TATTCAGTTGGATTGAAATA+TGG + chr5_3:58496149-58496168 Msa0820840:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr5_3:58496169-58496188 Msa0820840:intron 25.0%
! AATTGAAAAAGGGGATAAAA+AGG - chr5_3:58496346-58496365 None:intergenic 25.0%
! ATCTCTAATGTGTATCTATT+TGG + chr5_3:58497143-58497162 Msa0820840:intron 25.0%
! TCATAATAAGATTCGATTCA+CGG + chr5_3:58497298-58497317 Msa0820840:intron 25.0%
!!! TGTTATTTTACTTGTATGCT+TGG + chr5_3:58497776-58497795 Msa0820840:intron 25.0%
!! ATTTTCATGCCAATAGAAAA+TGG + chr5_3:58497841-58497860 Msa0820840:intron 25.0%
!! TGCATTAATCCATTTTCTAT+TGG - chr5_3:58497853-58497872 None:intergenic 25.0%
! ACTGATAAAAGATTGTTCAT+TGG + chr5_3:58497968-58497987 Msa0820840:intron 25.0%
! ACTACATCAAAACGAAAATA+CGG - chr5_3:58498138-58498157 None:intergenic 25.0%
! GATTTAATGGGAAAAATATG+AGG + chr5_3:58498442-58498461 Msa0820840:intron 25.0%
! TTGATTTAAACTTAGAACGA+GGG - chr5_3:58498496-58498515 None:intergenic 25.0%
!! ATTGATTTAAACTTAGAACG+AGG - chr5_3:58498497-58498516 None:intergenic 25.0%
! TGTGCTTATCAATATATGAA+TGG - chr5_3:58498522-58498541 None:intergenic 25.0%
!! CATGTGAAATTTCAGTTTTA+GGG - chr5_3:58498594-58498613 None:intergenic 25.0%
!! TCATGTGAAATTTCAGTTTT+AGG - chr5_3:58498595-58498614 None:intergenic 25.0%
!! TATTTTCTTCTTCAATGTTG+TGG - chr5_3:58499156-58499175 None:intergenic 25.0%
! AAATAAGCTAAACCAACTTA+TGG - chr5_3:58499296-58499315 None:intergenic 25.0%
! AAACTATCATGGAAAACATA+TGG - chr5_3:58499343-58499362 None:intergenic 25.0%
! TCCATGATAGTTTATGAAAA+CGG + chr5_3:58499350-58499369 Msa0820840:intron 25.0%
! AATAGCTTATACATAAGAAC+AGG + chr5_3:58499400-58499419 Msa0820840:intron 25.0%
!! TTTTTACGTGACAACTTTTT+TGG + chr5_3:58499562-58499581 Msa0820840:three_prime_UTR 25.0%
!!! ACTTCATTTTTCTCAAAATC+TGG - chr5_3:58499638-58499657 None:intergenic 25.0%
! AAAATGAAGTCACAGTTTAA+AGG + chr5_3:58499648-58499667 Msa0820840:three_prime_UTR 25.0%
! CAATTAATACATTGCTAAGA+TGG - chr5_3:58499728-58499747 None:intergenic 25.0%
!!! GGCTTTCAATACTTTTTTTA+AGG + chr5_3:58499801-58499820 Msa0820840:three_prime_UTR 25.0%
!!! TTCAATACTTTTTTTAAGGC+AGG + chr5_3:58499805-58499824 Msa0820840:three_prime_UTR 25.0%
! CTTAAATTCAAATTACCAAC+TGG + chr5_3:58500006-58500025 Msa0820840:three_prime_UTR 25.0%
GATATTAAGAGGAAAGAAAG+TGG - chr5_3:58495261-58495280 None:intergenic 30.0%
!!! CATTCTGTTTTTGTTTGGTT+GGG - chr5_3:58495287-58495306 None:intergenic 30.0%
!!! TCATTCTGTTTTTGTTTGGT+TGG - chr5_3:58495288-58495307 None:intergenic 30.0%
! TTTACAGTTTACAGTGTTGA+TGG - chr5_3:58495423-58495442 None:intergenic 30.0%
TTGAAGTGTAGAAAAACAGT+GGG - chr5_3:58495464-58495483 None:intergenic 30.0%
ATTGAAGTGTAGAAAAACAG+TGG - chr5_3:58495465-58495484 None:intergenic 30.0%
GACATTAGAGAGTGAAATTT+GGG + chr5_3:58495945-58495964 Msa0820840:intron 30.0%
AGAACCTATAGTAGAAAAGA+TGG + chr5_3:58495969-58495988 Msa0820840:intron 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG + chr5_3:58495980-58495999 Msa0820840:intron 30.0%
AAACAAACAACAACAACAAC+CGG - chr5_3:58496220-58496239 None:intergenic 30.0%
!!! ATAGTTTTGATCTGCAGTAA+CGG - chr5_3:58496431-58496450 None:intergenic 30.0%
!! AGAAGATATAGCTCTAATCT+TGG - chr5_3:58496631-58496650 None:intergenic 30.0%
! TGGTTCCATTAAGTGATTTT+GGG + chr5_3:58496748-58496767 Msa0820840:CDS 30.0%
! TTCCAAATTCAGAAAGTACA+CGG + chr5_3:58496875-58496894 Msa0820840:CDS 30.0%
TCCTTCCTTGAAAAATATTG+AGG + chr5_3:58496989-58497008 Msa0820840:CDS 30.0%
! AACTGCCTCAATATTTTTCA+AGG - chr5_3:58496997-58497016 None:intergenic 30.0%
! CATTAGAGATTCGTATTGAT+TGG - chr5_3:58497133-58497152 None:intergenic 30.0%
GAGATTTATCGCAATGAATT+GGG - chr5_3:58497177-58497196 None:intergenic 30.0%
AACACTTGAATATTAGAGCA+TGG - chr5_3:58497344-58497363 None:intergenic 30.0%
GTGTTAATAATATCTTGCGT+TGG + chr5_3:58497359-58497378 Msa0820840:intron 30.0%
TGTGATAGAGAAAAGATCAA+GGG + chr5_3:58497602-58497621 Msa0820840:CDS 30.0%
AATAGAAATTAGGGTAAGAG+AGG - chr5_3:58497908-58497927 None:intergenic 30.0%
TCTCTTACCCTAATTTCTAT+TGG + chr5_3:58497907-58497926 Msa0820840:intron 30.0%
GACATCACCAATAGAAATTA+GGG - chr5_3:58497917-58497936 None:intergenic 30.0%
AGACATCACCAATAGAAATT+AGG - chr5_3:58497918-58497937 None:intergenic 30.0%
!! AATTTCTATTGGTGATGTCT+TGG + chr5_3:58497918-58497937 Msa0820840:intron 30.0%
GAGAATGCATCATATAGTAA+AGG - chr5_3:58498111-58498130 None:intergenic 30.0%
CTACATCAAAACGAAAATAC+GGG - chr5_3:58498137-58498156 None:intergenic 30.0%
AGACTTGTCAGAGATTTAAT+GGG + chr5_3:58498430-58498449 Msa0820840:intron 30.0%
! TAATGATTTTTCTCATGCAG+TGG - chr5_3:58498637-58498656 None:intergenic 30.0%
ATTCTCACAAGTTGCATATT+AGG - chr5_3:58498675-58498694 None:intergenic 30.0%
AATTCAACTCTCTTGAAACA+TGG + chr5_3:58498762-58498781 Msa0820840:intron 30.0%
GGTAAATATAAGTGTGTGTA+TGG - chr5_3:58498876-58498895 None:intergenic 30.0%
ATTTACCTTGAAGAACATTG+AGG + chr5_3:58498889-58498908 Msa0820840:CDS 30.0%
AATATTACCTCTGATATGGT+AGG + chr5_3:58498996-58499015 Msa0820840:CDS 30.0%
GCAGATAAGCACAAATAAAT+AGG - chr5_3:58499215-58499234 None:intergenic 30.0%
ATTTATTTGTGCTTATCTGC+TGG + chr5_3:58499215-58499234 Msa0820840:intron 30.0%
! AAGCACTTGAGAAATTGTTT+TGG + chr5_3:58499241-58499260 Msa0820840:intron 30.0%
!!! AAATTGTTTTGGAGAGCTTA+CGG + chr5_3:58499252-58499271 Msa0820840:intron 30.0%
! ACCGTTTTCATAAACTATCA+TGG - chr5_3:58499354-58499373 None:intergenic 30.0%
ATTAAACTACACTGTTGCAT+GGG - chr5_3:58499772-58499791 None:intergenic 30.0%
AGTGTAGTTTAATGTTACAG+AGG + chr5_3:58499779-58499798 Msa0820840:three_prime_UTR 30.0%
GTGTAGTTTAATGTTACAGA+GGG + chr5_3:58499780-58499799 Msa0820840:three_prime_UTR 30.0%
!! CTCTTCTTTTGGTTAATTCA+AGG + chr5_3:58499914-58499933 Msa0820840:three_prime_UTR 30.0%
!! TCTTTTGGTTAATTCAAGGT+TGG + chr5_3:58499918-58499937 Msa0820840:three_prime_UTR 30.0%
!!! GCTTTTTAAGTTGTGAAAAC+TGG + chr5_3:58499949-58499968 Msa0820840:three_prime_UTR 30.0%
! TTAAGTTGTGAAAACTGGAT+TGG + chr5_3:58499954-58499973 Msa0820840:three_prime_UTR 30.0%
TGGTTGGGATAGATATTAAG+AGG - chr5_3:58495272-58495291 None:intergenic 35.0%
GAATGTGACTACATAGTACT+TGG + chr5_3:58495314-58495333 Msa0820840:five_prime_UTR 35.0%
! ATCTAAGGAGCATGAATCAT+AGG - chr5_3:58495387-58495406 None:intergenic 35.0%
! ACATGAAGGTATGAGATTGA+AGG - chr5_3:58495570-58495589 None:intergenic 35.0%
CGACATTAGAGAGTGAAATT+TGG + chr5_3:58495944-58495963 Msa0820840:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr5_3:58495972-58495991 Msa0820840:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr5_3:58495976-58495995 None:intergenic 35.0%
AGATGTAGAGGTTATTCAGT+TGG + chr5_3:58496137-58496156 Msa0820840:intron 35.0%
AACAAACAACAACAACAACC+GGG - chr5_3:58496219-58496238 None:intergenic 35.0%
CTCAACAGTTCTATCTATCA+AGG - chr5_3:58496458-58496477 None:intergenic 35.0%
!! AAGTTGGTAATGATGAGAGA+TGG - chr5_3:58496527-58496546 None:intergenic 35.0%
AGACATGAAGAAACAGAAGT+TGG - chr5_3:58496543-58496562 None:intergenic 35.0%
TTCCGATTTCGAATTGAAAG+CGG - chr5_3:58496600-58496619 None:intergenic 35.0%
ATGTCGAATATAACTGCAAG+TGG - chr5_3:58496702-58496721 None:intergenic 35.0%
! CTGGTTCCATTAAGTGATTT+TGG + chr5_3:58496747-58496766 Msa0820840:CDS 35.0%
!!! CCATTAAGTGATTTTGGGTT+CGG + chr5_3:58496753-58496772 Msa0820840:CDS 35.0%
GATACTATTTGTGCTCAGTA+TGG + chr5_3:58496827-58496846 Msa0820840:CDS 35.0%
!!! GCCTCAATATTTTTCAAGGA+AGG - chr5_3:58496993-58497012 None:intergenic 35.0%
TAGAGTCAGCAATGAAACTA+TGG - chr5_3:58497039-58497058 None:intergenic 35.0%
!! TCATTGCTGACTCTAATACA+TGG + chr5_3:58497044-58497063 Msa0820840:intron 35.0%
ACACTAGTCACATGTATCAT+AGG - chr5_3:58497080-58497099 None:intergenic 35.0%
CGAGATTTATCGCAATGAAT+TGG - chr5_3:58497178-58497197 None:intergenic 35.0%
GTGTGATAGAGAAAAGATCA+AGG + chr5_3:58497601-58497620 Msa0820840:CDS 35.0%
TTTCATCCAAACTTACTCCT+TGG - chr5_3:58497631-58497650 None:intergenic 35.0%
AGGAGTAAGTTTGGATGAAA+TGG + chr5_3:58497631-58497650 Msa0820840:CDS 35.0%
AGTAAGTTTGGATGAAATGG+TGG + chr5_3:58497634-58497653 Msa0820840:CDS 35.0%
GTAAGTTTGGATGAAATGGT+GGG + chr5_3:58497635-58497654 Msa0820840:CDS 35.0%
TATTGTCAACAGCTACTCAT+TGG + chr5_3:58497697-58497716 Msa0820840:CDS 35.0%
!!! TGAACGAGTTTTTGCTGTTA+TGG + chr5_3:58497721-58497740 Msa0820840:CDS 35.0%
TCTTGGACATAATCTGACTT+TGG + chr5_3:58497935-58497954 Msa0820840:intron 35.0%
AATATGTGTCTGCAGCTTTA+TGG + chr5_3:58498062-58498081 Msa0820840:intron 35.0%
TCTAGATGTTCAACCTTTGT+TGG + chr5_3:58498182-58498201 Msa0820840:CDS 35.0%
AACTCTCAACTTCCTTCAAT+AGG - chr5_3:58498227-58498246 None:intergenic 35.0%
GAGACTTGTCAGAGATTTAA+TGG + chr5_3:58498429-58498448 Msa0820840:intron 35.0%
TCAAACCTCAATGTTCTTCA+AGG - chr5_3:58498897-58498916 None:intergenic 35.0%
GCAGAATATTACCTCTGATA+TGG + chr5_3:58498992-58499011 Msa0820840:intron 35.0%
AGTAAAACCTACCATATCAG+AGG - chr5_3:58499006-58499025 None:intergenic 35.0%
! TCTGATATGGTAGGTTTTAC+TGG + chr5_3:58499005-58499024 Msa0820840:CDS 35.0%
TACTTATCAAGAATCTCAGC+AGG + chr5_3:58499057-58499076 Msa0820840:CDS 35.0%
CTTATGACATGTCCATAAGT+TGG + chr5_3:58499281-58499300 Msa0820840:intron 35.0%
AATTAAGCTGTTCATCCAAC+AGG + chr5_3:58499443-58499462 Msa0820840:intron 35.0%
ATTAAGCTGTTCATCCAACA+GGG + chr5_3:58499444-58499463 Msa0820840:intron 35.0%
GCAAGAAGAAAGATAGACTT+AGG - chr5_3:58499470-58499489 None:intergenic 35.0%
CTGATAAAAGTTGTCTTCTG+TGG + chr5_3:58499498-58499517 Msa0820840:intron 35.0%
TTGGTTTCTGCTCAAGTTAT+TGG + chr5_3:58499581-58499600 Msa0820840:three_prime_UTR 35.0%
CATTAAACTACACTGTTGCA+TGG - chr5_3:58499773-58499792 None:intergenic 35.0%
! TCTTAGTTGCTCTCTTCTTT+TGG + chr5_3:58499903-58499922 Msa0820840:three_prime_UTR 35.0%
GTTGCTTGAGAACTAGTATT+TGG + chr5_3:58499980-58499999 Msa0820840:three_prime_UTR 35.0%
GTCTTTGTGAAATACTCACC+TGG - chr5_3:58495207-58495226 None:intergenic 40.0%
GGTGAGTATTTCACAAAGAC+CGG + chr5_3:58495207-58495226 Msa0820840:five_prime_UTR 40.0%
CTGTTCTCGTTTCTTCGATT+CGG + chr5_3:58495350-58495369 Msa0820840:five_prime_UTR 40.0%
GGAAGAGAGAGAGAAATCTA+AGG - chr5_3:58495402-58495421 None:intergenic 40.0%
!! AAGATGGTGGAAAATAGGCT+TGG + chr5_3:58495985-58496004 Msa0820840:intron 40.0%
!! AGATGGTGGAAAATAGGCTT+GGG + chr5_3:58495986-58496005 Msa0820840:intron 40.0%
AAAATAGGCTTGGGTGGTTT+GGG + chr5_3:58495995-58496014 Msa0820840:intron 40.0%
ACAAACAACAACAACAACCG+GGG - chr5_3:58496218-58496237 None:intergenic 40.0%
!!! GAACTGTTGAGTTTTGAGCA+AGG + chr5_3:58496467-58496486 Msa0820840:five_prime_UTR 40.0%
!! ATGATGAGAGATGGATTGCA+GGG - chr5_3:58496518-58496537 None:intergenic 40.0%
!! AATGATGAGAGATGGATTGC+AGG - chr5_3:58496519-58496538 None:intergenic 40.0%
TCATGTCTGATTTCTCTACC+AGG + chr5_3:58496555-58496574 Msa0820840:CDS 40.0%
GCAAACTTTAATGAGTTGCC+TGG - chr5_3:58496576-58496595 None:intergenic 40.0%
TCGACATTCCTAGACGTATT+TGG + chr5_3:58496715-58496734 Msa0820840:CDS 40.0%
GTTTGCTTCCAAATACGTCT+AGG - chr5_3:58496726-58496745 None:intergenic 40.0%
ACGTATTTGGAAGCAAACAC+TGG + chr5_3:58496728-58496747 Msa0820840:CDS 40.0%
CCGAACCCAAAATCACTTAA+TGG - chr5_3:58496756-58496775 None:intergenic 40.0%
!!! GTTGGACTGTTTTTGGTATC+TGG + chr5_3:58496801-58496820 Msa0820840:CDS 40.0%
TATTTGTGCTCAGTATGGCT+TGG + chr5_3:58496832-58496851 Msa0820840:CDS 40.0%
TGCCGTGTACTTTCTGAATT+TGG - chr5_3:58496880-58496899 None:intergenic 40.0%
AAATATTGAGGCAGTTGTCG+AGG + chr5_3:58497001-58497020 Msa0820840:CDS 40.0%
ACCAAAGAACTCATTCGTTG+AGG + chr5_3:58497463-58497482 Msa0820840:CDS 40.0%
ACCTCAACGAATGAGTTCTT+TGG - chr5_3:58497467-58497486 None:intergenic 40.0%
! TAACCAGTCAGGTCTTTTGA+TGG + chr5_3:58497487-58497506 Msa0820840:CDS 40.0%
TTTCCATCAAAAGACCTGAC+TGG - chr5_3:58497493-58497512 None:intergenic 40.0%
TTAGCACATTCTTCGTCAAG+AGG - chr5_3:58497566-58497585 None:intergenic 40.0%
GACGAAGAATGTGCTAAAGA+AGG + chr5_3:58497569-58497588 Msa0820840:CDS 40.0%
GGACATAATCTGACTTTGGT+AGG + chr5_3:58497939-58497958 Msa0820840:intron 40.0%
AATCATCAGAAGCTAGGGTA+AGG - chr5_3:58498260-58498279 None:intergenic 40.0%
CCTCAAATCATCAGAAGCTA+GGG - chr5_3:58498265-58498284 None:intergenic 40.0%
ACCTCAAATCATCAGAAGCT+AGG - chr5_3:58498266-58498285 None:intergenic 40.0%
GTCAGTTGTCTAAACACCAA+TGG + chr5_3:58498284-58498303 Msa0820840:intron 40.0%
GCTTCTCTGTACGACTAATT+TGG + chr5_3:58498306-58498325 Msa0820840:intron 40.0%
GGGAAAAATATGAGGTTGTG+TGG + chr5_3:58498450-58498469 Msa0820840:intron 40.0%
CGCGCAAATCTTATCACATA+AGG - chr5_3:58498548-58498567 None:intergenic 40.0%
! TTTAGGGTCTTCAACTGAAC+AGG - chr5_3:58498578-58498597 None:intergenic 40.0%
TCCCTTTGTGTGTATTCAGA+AGG + chr5_3:58498801-58498820 Msa0820840:intron 40.0%
CCCTTCTGAATACACACAAA+GGG - chr5_3:58498805-58498824 None:intergenic 40.0%
CCCTTTGTGTGTATTCAGAA+GGG + chr5_3:58498802-58498821 Msa0820840:intron 40.0%
TAAGTGTGTGTATGGACTTC+TGG - chr5_3:58498868-58498887 None:intergenic 40.0%
! CCTGTTATATGCTACTTCAC+TGG - chr5_3:58499102-58499121 None:intergenic 40.0%
CCAGTGAAGTAGCATATAAC+AGG + chr5_3:58499099-58499118 Msa0820840:three_prime_UTR 40.0%
GTTGTGGCAGAGGAAAAATA+TGG - chr5_3:58499140-58499159 None:intergenic 40.0%
CTTAGTGTTTAATTGGGGTG+AGG + chr5_3:58499683-58499702 Msa0820840:three_prime_UTR 40.0%
!! GTTGTGAAAACTGGATTGGT+TGG + chr5_3:58499958-58499977 Msa0820840:three_prime_UTR 40.0%
!! TTATCGATTCGGAAACCAGT+TGG - chr5_3:58500024-58500043 None:intergenic 40.0%
ACAAAAAATTGTCGCGGTGC+CGG - chr5_3:58495229-58495248 None:intergenic 45.0%
GTGCTAAGACTAGACGAGAT+AGG + chr5_3:58495910-58495929 Msa0820840:intron 45.0%
GAAAATAGGCTTGGGTGGTT+TGG + chr5_3:58495994-58496013 Msa0820840:intron 45.0%
AAGGAGAGTAGACCAGATGA+AGG + chr5_3:58496057-58496076 Msa0820840:intron 45.0%
AGGAGAGTAGACCAGATGAA+GGG + chr5_3:58496058-58496077 Msa0820840:intron 45.0%
!!! CTGTTGAGTTTTGAGCAAGG+AGG + chr5_3:58496470-58496489 Msa0820840:five_prime_UTR 45.0%
!!! TGAGTTTTGAGCAAGGAGGT+TGG + chr5_3:58496474-58496493 Msa0820840:five_prime_UTR 45.0%
!! CAAGGAGGTTGGTTTGAAGA+TGG + chr5_3:58496485-58496504 Msa0820840:exon 45.0%
!! GAGGTTGGTTTGAAGATGGT+CGG + chr5_3:58496489-58496508 Msa0820840:exon 45.0%
!! AGGTTGGTTTGAAGATGGTC+GGG + chr5_3:58496490-58496509 Msa0820840:exon 45.0%
! CGCCGCTTTCAATTCGAAAT+CGG + chr5_3:58496595-58496614 Msa0820840:CDS 45.0%
GTTCGGTCGTAATAGTGTCT+GGG + chr5_3:58496770-58496789 Msa0820840:CDS 45.0%
GTAATAGTGTCTGGGAAGGT+GGG + chr5_3:58496778-58496797 Msa0820840:CDS 45.0%
TAATAGTGTCTGGGAAGGTG+GGG + chr5_3:58496779-58496798 Msa0820840:CDS 45.0%
! TTCGAGTTTGCTCAAGCTTG+TGG + chr5_3:58496903-58496922 Msa0820840:CDS 45.0%
CAAGCTTGTGGTATAAGCAC+TGG + chr5_3:58496915-58496934 Msa0820840:CDS 45.0%
GAACACCTGTGAGAATCAGA+GGG + chr5_3:58496937-58496956 Msa0820840:CDS 45.0%
AACACCTGTGAGAATCAGAG+GGG + chr5_3:58496938-58496957 Msa0820840:CDS 45.0%
! GCAGTTGTCGAGGTTTGTTT+CGG + chr5_3:58497011-58497030 Msa0820840:intron 45.0%
TTCGTTGAGGTTAACCAGTC+AGG + chr5_3:58497476-58497495 Msa0820840:CDS 45.0%
GAAAAGATCAAGGGTCACCA+AGG + chr5_3:58497611-58497630 Msa0820840:CDS 45.0%
AGCAAGACCACTTCTTACAC+AGG + chr5_3:58497748-58497767 Msa0820840:CDS 45.0%
CATCACACCTGTGTAAGAAG+TGG - chr5_3:58497758-58497777 None:intergenic 45.0%
TTACTTGTATGCTTGGCACG+TGG + chr5_3:58497783-58497802 Msa0820840:intron 45.0%
! ATTAGGGTAAGAGAGGCACA+TGG - chr5_3:58497901-58497920 None:intergenic 45.0%
! AGGTTGAACATCTAGAGCCA+TGG - chr5_3:58498178-58498197 None:intergenic 45.0%
CCCTAGCTTCTGATGATTTG+AGG + chr5_3:58498262-58498281 Msa0820840:CDS 45.0%
TAGTCGTACAGAGAAGCCAT+TGG - chr5_3:58498303-58498322 None:intergenic 45.0%
TAGCACATTGTCGTTCGTGT+GGG + chr5_3:58498361-58498380 Msa0820840:intron 45.0%
GCCCTTCTGAATACACACAA+AGG - chr5_3:58498806-58498825 None:intergenic 45.0%
CTTCTTCAATGTTGTGGCAG+AGG - chr5_3:58499150-58499169 None:intergenic 45.0%
AAGATAGACTTAGGCCCTGT+TGG - chr5_3:58499461-58499480 None:intergenic 45.0%
CAAGTGACATGATCCACAGA+TGG - chr5_3:58499609-58499628 None:intergenic 45.0%
!!! ATTTTTAATAATTCATTTTA+CGG - chr5_3:58498028-58498047 None:intergenic 5.0%
!!! TAGTAATTTAAATTTTTTTA+AGG + chr5_3:58499174-58499193 Msa0820840:intron 5.0%
!!! AGTAATTTAAATTTTTTTAA+GGG + chr5_3:58499175-58499194 Msa0820840:intron 5.0%
TGGTGGAAAATAGGCTTGGG+TGG + chr5_3:58495989-58496008 Msa0820840:intron 50.0%
TGATTCGACTGCCCTTCATC+TGG - chr5_3:58496072-58496091 None:intergenic 50.0%
ACAACAACAACAACCGGGGT+CGG - chr5_3:58496214-58496233 None:intergenic 50.0%
! GGTTCGGTCGTAATAGTGTC+TGG + chr5_3:58496769-58496788 Msa0820840:CDS 50.0%
GGTCGTAATAGTGTCTGGGA+AGG + chr5_3:58496774-58496793 Msa0820840:CDS 50.0%
CGTAATAGTGTCTGGGAAGG+TGG + chr5_3:58496777-58496796 Msa0820840:CDS 50.0%
! AGGTGGGGTTGGACTGTTTT+TGG + chr5_3:58496794-58496813 Msa0820840:CDS 50.0%
GGAACACCTGTGAGAATCAG+AGG + chr5_3:58496936-58496955 Msa0820840:CDS 50.0%
AGAATCAGAGGGGTCACTGT+TGG + chr5_3:58496948-58496967 Msa0820840:CDS 50.0%
!! CCAACTGAAGGTGTCGGAAT+TGG - chr5_3:58497542-58497561 None:intergenic 50.0%
CCAATTCCGACACCTTCAGT+TGG + chr5_3:58497539-58497558 Msa0820840:CDS 50.0%
! AGAGGACCAACTGAAGGTGT+CGG - chr5_3:58497548-58497567 None:intergenic 50.0%
TCGTCAAGAGGACCAACTGA+AGG - chr5_3:58497554-58497573 None:intergenic 50.0%
GGGTCACCAAGGAGTAAGTT+TGG + chr5_3:58497622-58497641 Msa0820840:CDS 50.0%
GTGGGAATATACACCCGTCT+TGG + chr5_3:58497653-58497672 Msa0820840:CDS 50.0%
CTCTACATCTCGTCCAAGAC+GGG - chr5_3:58497669-58497688 None:intergenic 50.0%
CCTCTACATCTCGTCCAAGA+CGG - chr5_3:58497670-58497689 None:intergenic 50.0%
CGTCTTGGACGAGATGTAGA+GGG + chr5_3:58497668-58497687 Msa0820840:CDS 50.0%
GGACGAGATGTAGAGGGAAT+TGG + chr5_3:58497674-58497693 Msa0820840:CDS 50.0%
GATGCCTCAGATGAAAGCCA+TGG + chr5_3:58498158-58498177 Msa0820840:intron 50.0%
AGAGCCATGGCTTTCATCTG+AGG - chr5_3:58498165-58498184 None:intergenic 50.0%
TGTTCAACCTTTGTTGGCCG+AGG + chr5_3:58498188-58498207 Msa0820840:CDS 50.0%
CCTTCAATAGGCCGCTATCA+CGG - chr5_3:58498215-58498234 None:intergenic 50.0%
AGAAGCTAGGGTAAGGCTTC+GGG - chr5_3:58498253-58498272 None:intergenic 50.0%
CAGAAGCTAGGGTAAGGCTT+CGG - chr5_3:58498254-58498273 None:intergenic 50.0%
GTAGCACATTGTCGTTCGTG+TGG + chr5_3:58498360-58498379 Msa0820840:intron 50.0%
AGCACATTGTCGTTCGTGTG+GGG + chr5_3:58498362-58498381 Msa0820840:intron 50.0%
GATCAGCTCAGCGTTCTCAT+TGG - chr5_3:58498846-58498865 None:intergenic 50.0%
CAAGTTATTGGCGCCATCTG+TGG + chr5_3:58499593-58499612 Msa0820840:three_prime_UTR 50.0%
TTGATCCATGTAGCCGACCC+CGG + chr5_3:58496198-58496217 Msa0820840:intron 55.0%
GTGACCCCTCTGATTCTCAC+AGG - chr5_3:58496945-58496964 None:intergenic 55.0%
! GGTGTCGGAATTGGATCACG+AGG - chr5_3:58497533-58497552 None:intergenic 55.0%
CCGTCTTGGACGAGATGTAG+AGG + chr5_3:58497667-58497686 Msa0820840:CDS 55.0%
!! CCGTGATAGCGGCCTATTGA+AGG + chr5_3:58498212-58498231 Msa0820840:CDS 55.0%
GCACATTGTCGTTCGTGTGG+GGG + chr5_3:58498363-58498382 Msa0820840:intron 55.0%
ATGAGGTTGTGTGGCCTGCT+TGG + chr5_3:58498459-58498478 Msa0820840:intron 55.0%
TGAGGTTGTGTGGCCTGCTT+GGG + chr5_3:58498460-58498479 Msa0820840:intron 55.0%
!! TCTGTGGTGTTGATGCGTGC+AGG + chr5_3:58499514-58499533 Msa0820840:intron 55.0%
AACAACCGGGGTCGGCTACA+TGG - chr5_3:58496206-58496225 None:intergenic 60.0%
AGTGTCTGGGAAGGTGGGGT+TGG + chr5_3:58496783-58496802 Msa0820840:CDS 60.0%
TCACGGACCTCGGCCAACAA+AGG - chr5_3:58498198-58498217 None:intergenic 60.0%
TTGGCCGAGGTCCGTGATAG+CGG + chr5_3:58498201-58498220 Msa0820840:CDS 60.0%
TAGGCCGCTATCACGGACCT+CGG - chr5_3:58498208-58498227 None:intergenic 60.0%
GGGCATCTGTGTTCCCAAGC+AGG - chr5_3:58498476-58498495 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 58495193 58500059 58495193 ID=Msa0820840;Name=Msa0820840
chr5_3 mRNA 58495193 58500059 58495193 ID=Msa0820840-mRNA-1;Parent=Msa0820840;Name=Msa0820840-mRNA-1;_AED=0.17;_eAED=0.17;_QI=336|1|1|1|0.66|0.42|7|556|382
chr5_3 exon 58495193 58495442 58495193 ID=Msa0820840-mRNA-1:exon:17769;Parent=Msa0820840-mRNA-1
chr5_3 exon 58496418 58497022 58496418 ID=Msa0820840-mRNA-1:exon:17770;Parent=Msa0820840-mRNA-1
chr5_3 exon 58497440 58497769 58497440 ID=Msa0820840-mRNA-1:exon:17771;Parent=Msa0820840-mRNA-1
chr5_3 exon 58498168 58498283 58498168 ID=Msa0820840-mRNA-1:exon:17772;Parent=Msa0820840-mRNA-1
chr5_3 exon 58498820 58498910 58498820 ID=Msa0820840-mRNA-1:exon:17773;Parent=Msa0820840-mRNA-1
chr5_3 exon 58498996 58499120 58498996 ID=Msa0820840-mRNA-1:exon:17774;Parent=Msa0820840-mRNA-1
chr5_3 exon 58499536 58500059 58499536 ID=Msa0820840-mRNA-1:exon:17775;Parent=Msa0820840-mRNA-1
chr5_3 five_prime_UTR 58495193 58495442 58495193 ID=Msa0820840-mRNA-1:five_prime_utr;Parent=Msa0820840-mRNA-1
chr5_3 five_prime_UTR 58496418 58496503 58496418 ID=Msa0820840-mRNA-1:five_prime_utr;Parent=Msa0820840-mRNA-1
chr5_3 CDS 58496504 58497022 58496504 ID=Msa0820840-mRNA-1:cds;Parent=Msa0820840-mRNA-1
chr5_3 CDS 58497440 58497769 58497440 ID=Msa0820840-mRNA-1:cds;Parent=Msa0820840-mRNA-1
chr5_3 CDS 58498168 58498283 58498168 ID=Msa0820840-mRNA-1:cds;Parent=Msa0820840-mRNA-1
chr5_3 CDS 58498820 58498910 58498820 ID=Msa0820840-mRNA-1:cds;Parent=Msa0820840-mRNA-1
chr5_3 CDS 58498996 58499088 58498996 ID=Msa0820840-mRNA-1:cds;Parent=Msa0820840-mRNA-1
chr5_3 three_prime_UTR 58499089 58499120 58499089 ID=Msa0820840-mRNA-1:three_prime_utr;Parent=Msa0820840-mRNA-1
chr5_3 three_prime_UTR 58499536 58500059 58499536 ID=Msa0820840-mRNA-1:three_prime_utr;Parent=Msa0820840-mRNA-1
Gene Sequence

>Msa0820840

ATGGTCGGGAACCCTGCAATCCATCTCTCATCATTACCAACTTCTGTTTCTTCATGTCTGATTTCTCTACCAGGCAACTCATTAAAGTTTGCGCCGCTTTCAATTCGAAATCGGAAGAAAATCACCAAGATTAGAGCTATATCTTCTGATACAAGCAATGTCAAAAAACAGTCATCTAGTTCAGAAACAAAGAATCCACTTGCAGTTATATTCGACATTCCTAGACGTATTTGGAAGCAAACACTGGTTCCATTAAGTGATTTTGGGTTCGGTCGTAATAGTGTCTGGGAAGGTGGGGTTGGACTGTTTTTGGTATCTGGTACGATACTATTTGTGCTCAGTATGGCTTGGTTGAGAGCATTCCAAATAAATTCCAAATTCAGAAAGTACACGGCAGTTTTCGAGTTTGCTCAAGCTTGTGGTATAAGCACTGGAACACCTGTGAGAATCAGAGGGGTCACTGTTGGCAATGTCATTCGCGTTAATCCTTCCTTGAAAAATATTGAGGCAGTTGTCGAGATAGAAGACGATAAAACAATTATACCAAAGAACTCATTCGTTGAGGTTAACCAGTCAGGTCTTTTGATGGAAACTAAAATCGACATCAATCCTCGTGATCCAATTCCGACACCTTCAGTTGGTCCTCTTGACGAAGAATGTGCTAAAGAAGGTCTCATTGTGTGTGATAGAGAAAAGATCAAGGGTCACCAAGGAGTAAGTTTGGATGAAATGGTGGGAATATACACCCGTCTTGGACGAGATGTAGAGGGAATTGGTATTGTCAACAGCTACTCATTGGCTGAACGAGTTTTTGCTGTTATGGAAGAAGCAAGACCACTTCTTACACAGATGAAAGCCATGGCTCTAGATGTTCAACCTTTGTTGGCCGAGGTCCGTGATAGCGGCCTATTGAAGGAAGTTGAGAGTTTGACCCGAAGCCTTACCCTAGCTTCTGATGATTTGAGAAGGGCGCATTCAACGATTATGACCAATGAGAACGCTGAGCTGATCCAGAAGTCCATACACACACTTATATTTACCTTGAAGAACATTGAGAATATTACCTCTGATATGGTAGGTTTTACTGGCGATGAAAGTACCAAAAAGAATTTGAAACTACTTATCAAGAATCTCAGCAGGTTATTGTGA
Protein sequence

>Msa0820840

MVGNPAIHLSSLPTSVSSCLISLPGNSLKFAPLSIRNRKKITKIRAISSDTSNVKKQSSSSETKNPLAVIFDIPRRIWKQTLVPLSDFGFGRNSVWEGGVGLFLVSGTILFVLSMAWLRAFQINSKFRKYTAVFEFAQACGISTGTPVRIRGVTVGNVIRVNPSLKNIEAVVEIEDDKTIIPKNSFVEVNQSGLLMETKIDINPRDPIPTPSVGPLDEECAKEGLIVCDREKIKGHQGVSLDEMVGIYTRLGRDVEGIGIVNSYSLAERVFAVMEEARPLLTQMKAMALDVQPLLAEVRDSGLLKEVESLTRSLTLASDDLRRAHSTIMTNENAELIQKSIHTLIFTLKNIENITSDMVGFTGDESTKKNLKLLIKNLSRLL*