AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0861120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861120 MtrunA17_Chr5g0441001 98.168 382 7 0 1 382 1 382 0.0 762
Msa0861120 MtrunA17_Chr3g0093291 69.870 385 103 3 1 382 1 375 0.0 526
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0861120 AT3G20320.1 67.013 385 120 4 1 382 1 381 0.0 514
Msa0861120 AT3G20320.3 64.336 286 95 4 1 283 1 282 5.33e-126 364
Msa0861120 AT3G20320.2 64.336 286 95 4 1 283 1 282 5.33e-126 364

Find 122 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCCGTGTACTTTCTGAATT+TGG 0.116083 5_4:-60293900 None:intergenic
TTCTGAATTTGGAATTTATT+TGG 0.119827 5_4:-60293889 None:intergenic
AGAATTTCTTAGTGTTTAAT+TGG 0.142646 5_4:+60296699 Msa0861120:three_prime_UTR
CTGGTTCCATTAAGTGATTT+TGG 0.187008 5_4:+60293770 Msa0861120:CDS
TTGGTTTCTGCTCAAGTTAT+TGG 0.216205 5_4:+60296604 Msa0861120:three_prime_UTR
TCGACATTCCTAGACGTATT+TGG 0.229781 5_4:+60293738 Msa0861120:CDS
CCGAACCCAAAATCACTTAA+TGG 0.259393 5_4:-60293776 None:intergenic
AAAATGAAGTCACAGTTTAA+AGG 0.271407 5_4:+60296671 Msa0861120:three_prime_UTR
TCTTAGTTGCTCTCTTCTTT+TGG 0.272872 5_4:+60296926 Msa0861120:three_prime_UTR
TAAGTGTGTGTATGGACTTC+TGG 0.303339 5_4:-60295888 None:intergenic
GTTGCTTGAGAACTAGTATT+TGG 0.318581 5_4:+60297003 Msa0861120:three_prime_UTR
CCCTAGCTTCTGATGATTTG+AGG 0.341669 5_4:+60295285 Msa0861120:CDS
GAATTTCTTAGTGTTTAATT+GGG 0.343733 5_4:+60296700 Msa0861120:three_prime_UTR
GGTTCGGTCGTAATAGTGTC+TGG 0.356449 5_4:+60293792 Msa0861120:CDS
TTTACAGTTTACAGTGTTGA+TGG 0.359029 5_4:-60292443 None:intergenic
CTGTTCTCGTTTCTTCGATT+CGG 0.359881 5_4:+60292373 Msa0861120:five_prime_UTR
ACCTCAACGAATGAGTTCTT+TGG 0.362103 5_4:-60294487 None:intergenic
CCAACTGAAGGTGTCGGAAT+TGG 0.367176 5_4:-60294562 None:intergenic
GATACTATTTGTGCTCAGTA+TGG 0.382900 5_4:+60293850 Msa0861120:CDS
TCTAGATGTTCAACCTTTGT+TGG 0.383759 5_4:+60295205 Msa0861120:CDS
CGCCGCTTTCAATTCGAAAT+CGG 0.390643 5_4:+60293618 Msa0861120:CDS
CTTAAATTCAAATTACCAAC+TGG 0.392520 5_4:+60297029 Msa0861120:three_prime_UTR
GGTAAATATAAGTGTGTGTA+TGG 0.394496 5_4:-60295896 None:intergenic
GCAGAATATTACCTCTGATA+TGG 0.395381 5_4:+60296015 Msa0861120:intron
CAGAAGCTAGGGTAAGGCTT+CGG 0.397566 5_4:-60295274 None:intergenic
CGTAATAGTGTCTGGGAAGG+TGG 0.403648 5_4:+60293800 Msa0861120:CDS
GGGTCACCAAGGAGTAAGTT+TGG 0.410151 5_4:+60294645 Msa0861120:CDS
CCTGTTATATGCTACTTCAC+TGG 0.413187 5_4:-60296122 None:intergenic
CCAGTGAAGTAGCATATAAC+AGG 0.418405 5_4:+60296122 Msa0861120:three_prime_UTR
CAATTAATACATTGCTAAGA+TGG 0.426922 5_4:-60296748 None:intergenic
GGAAGAGAGAGAGAAATCTA+AGG 0.431560 5_4:-60292422 None:intergenic
TCAAACCTCAATGTTCTTCA+AGG 0.432770 5_4:-60295917 None:intergenic
AGGAGTAAGTTTGGATGAAA+TGG 0.434275 5_4:+60294654 Msa0861120:CDS
TGGTTGGGATAGATATTAAG+AGG 0.436953 5_4:-60292292 None:intergenic
GGACGAGATGTAGAGGGAAT+TGG 0.437089 5_4:+60294697 Msa0861120:CDS
TTCGTTGAGGTTAACCAGTC+AGG 0.437205 5_4:+60294499 Msa0861120:CDS
AGAAGCTAGGGTAAGGCTTC+GGG 0.447061 5_4:-60295273 None:intergenic
GTAATAGTGTCTGGGAAGGT+GGG 0.447383 5_4:+60293801 Msa0861120:CDS
TATTGTCAACAGCTACTCAT+TGG 0.447423 5_4:+60294720 Msa0861120:CDS
ATCTAAGGAGCATGAATCAT+AGG 0.458443 5_4:-60292407 None:intergenic
AACTCTCAACTTCCTTCAAT+AGG 0.459217 5_4:-60295247 None:intergenic
GATATTAAGAGGAAAGAAAG+TGG 0.462883 5_4:-60292281 None:intergenic
CTTAGTGTTTAATTGGGGTG+AGG 0.463530 5_4:+60296706 Msa0861120:three_prime_UTR
AATGATGAGAGATGGATTGC+AGG 0.470223 5_4:-60293539 None:intergenic
AGAAGATATAGCTCTAATCT+TGG 0.470549 5_4:-60293651 None:intergenic
CATTAAACTACACTGTTGCA+TGG 0.474864 5_4:-60296793 None:intergenic
CCGTGATAGCGGCCTATTGA+AGG 0.476864 5_4:+60295235 Msa0861120:CDS
TTTCATCCAAACTTACTCCT+TGG 0.476894 5_4:-60294651 None:intergenic
AGTGTCTGGGAAGGTGGGGT+TGG 0.483560 5_4:+60293806 Msa0861120:CDS
CTCAACAGTTCTATCTATCA+AGG 0.484924 5_4:-60293478 None:intergenic
CAAGTTATTGGCGCCATCTG+TGG 0.490797 5_4:+60296616 Msa0861120:three_prime_UTR
AGGTTGGTTTGAAGATGGTC+GGG 0.496868 5_4:+60293513 Msa0861120:exon
CAAGGAGGTTGGTTTGAAGA+TGG 0.498626 5_4:+60293508 Msa0861120:exon
CTCTACATCTCGTCCAAGAC+GGG 0.503075 5_4:-60294689 None:intergenic
TTAAGTTGTGAAAACTGGAT+TGG 0.508380 5_4:+60296977 Msa0861120:three_prime_UTR
TTCGAGTTTGCTCAAGCTTG+TGG 0.510719 5_4:+60293926 Msa0861120:CDS
GATCAGCTCAGCGTTCTCAT+TGG 0.514219 5_4:-60295866 None:intergenic
CAAGCTTGTGGTATAAGCAC+TGG 0.514308 5_4:+60293938 Msa0861120:CDS
GAGGTTGGTTTGAAGATGGT+CGG 0.514964 5_4:+60293512 Msa0861120:exon
TGTTCAACCTTTGTTGGCCG+AGG 0.515090 5_4:+60295211 Msa0861120:CDS
ACCTCAAATCATCAGAAGCT+AGG 0.518321 5_4:-60295286 None:intergenic
AGTAAGTTTGGATGAAATGG+TGG 0.526004 5_4:+60294657 Msa0861120:CDS
TATTTGTGCTCAGTATGGCT+TGG 0.529985 5_4:+60293855 Msa0861120:CDS
CCTCAAATCATCAGAAGCTA+GGG 0.532646 5_4:-60295285 None:intergenic
GACGAAGAATGTGCTAAAGA+AGG 0.539788 5_4:+60294592 Msa0861120:CDS
GTTGTGAAAACTGGATTGGT+TGG 0.540427 5_4:+60296981 Msa0861120:three_prime_UTR
GAATGTGACTACATAGTACT+TGG 0.541180 5_4:+60292337 Msa0861120:five_prime_UTR
GCAAACTTTAATGAGTTGCC+TGG 0.541843 5_4:-60293596 None:intergenic
TTAGCACATTCTTCGTCAAG+AGG 0.542683 5_4:-60294586 None:intergenic
GTGGGAATATACACCCGTCT+TGG 0.543764 5_4:+60294676 Msa0861120:CDS
AGACATGAAGAAACAGAAGT+TGG 0.546046 5_4:-60293563 None:intergenic
GGTGAGTATTTCACAAAGAC+CGG 0.547558 5_4:+60292230 Msa0861120:five_prime_UTR
AATCATCAGAAGCTAGGGTA+AGG 0.550341 5_4:-60295280 None:intergenic
GTTTGCTTCCAAATACGTCT+AGG 0.553355 5_4:-60293746 None:intergenic
TACTTATCAAGAATCTCAGC+AGG 0.558675 5_4:+60296080 Msa0861120:CDS
AATTTCTTAGTGTTTAATTG+GGG 0.559455 5_4:+60296701 Msa0861120:three_prime_UTR
TTGGCCGAGGTCCGTGATAG+CGG 0.559975 5_4:+60295224 Msa0861120:CDS
TTTCCATCAAAAGACCTGAC+TGG 0.561040 5_4:-60294513 None:intergenic
ATTAAACTACACTGTTGCAT+GGG 0.566235 5_4:-60296792 None:intergenic
AATATTACCTCTGATATGGT+AGG 0.567654 5_4:+60296019 Msa0861120:CDS
TCATGTCTGATTTCTCTACC+AGG 0.568622 5_4:+60293578 Msa0861120:CDS
AAGTTGGTAATGATGAGAGA+TGG 0.569327 5_4:-60293547 None:intergenic
ATGTCGAATATAACTGCAAG+TGG 0.569675 5_4:-60293722 None:intergenic
GTGTGATAGAGAAAAGATCA+AGG 0.578775 5_4:+60294624 Msa0861120:CDS
AGAATCAGAGGGGTCACTGT+TGG 0.578987 5_4:+60293971 Msa0861120:CDS
GTCTTTGTGAAATACTCACC+TGG 0.579778 5_4:-60292227 None:intergenic
CCGTCTTGGACGAGATGTAG+AGG 0.580203 5_4:+60294690 Msa0861120:CDS
AAATATTGAGGCAGTTGTCG+AGG 0.580609 5_4:+60294024 Msa0861120:CDS
CCTCTACATCTCGTCCAAGA+CGG 0.581056 5_4:-60294690 None:intergenic
ATTTACCTTGAAGAACATTG+AGG 0.581288 5_4:+60295912 Msa0861120:CDS
ACCAAAGAACTCATTCGTTG+AGG 0.582607 5_4:+60294486 Msa0861120:CDS
ACGTATTTGGAAGCAAACAC+TGG 0.584425 5_4:+60293751 Msa0861120:CDS
GTGTAGTTTAATGTTACAGA+GGG 0.585646 5_4:+60296803 Msa0861120:three_prime_UTR
TTATCGATTCGGAAACCAGT+TGG 0.587944 5_4:-60297044 None:intergenic
CATCACACCTGTGTAAGAAG+TGG 0.588961 5_4:-60294778 None:intergenic
TTCCGATTTCGAATTGAAAG+CGG 0.589796 5_4:-60293620 None:intergenic
ATGATGAGAGATGGATTGCA+GGG 0.591195 5_4:-60293538 None:intergenic
GTTCGGTCGTAATAGTGTCT+GGG 0.600508 5_4:+60293793 Msa0861120:CDS
TAATAGTGTCTGGGAAGGTG+GGG 0.601222 5_4:+60293802 Msa0861120:CDS
GGAACACCTGTGAGAATCAG+AGG 0.601263 5_4:+60293959 Msa0861120:CDS
CCTTCAATAGGCCGCTATCA+CGG 0.604578 5_4:-60295235 None:intergenic
CCAATTCCGACACCTTCAGT+TGG 0.606380 5_4:+60294562 Msa0861120:CDS
GTGACCCCTCTGATTCTCAC+AGG 0.607320 5_4:-60293965 None:intergenic
GAAAAGATCAAGGGTCACCA+AGG 0.610061 5_4:+60294634 Msa0861120:CDS
TCACGGACCTCGGCCAACAA+AGG 0.611021 5_4:-60295218 None:intergenic
CGTCTTGGACGAGATGTAGA+GGG 0.621614 5_4:+60294691 Msa0861120:CDS
TAGGCCGCTATCACGGACCT+CGG 0.624041 5_4:-60295228 None:intergenic
GTAAGTTTGGATGAAATGGT+GGG 0.624337 5_4:+60294658 Msa0861120:CDS
GAACACCTGTGAGAATCAGA+GGG 0.624575 5_4:+60293960 Msa0861120:CDS
AGCAAGACCACTTCTTACAC+AGG 0.628481 5_4:+60294771 Msa0861120:CDS
TCGTCAAGAGGACCAACTGA+AGG 0.630553 5_4:-60294574 None:intergenic
GGTCGTAATAGTGTCTGGGA+AGG 0.632151 5_4:+60293797 Msa0861120:CDS
AGGTTGAACATCTAGAGCCA+TGG 0.633693 5_4:-60295198 None:intergenic
AGAGGACCAACTGAAGGTGT+CGG 0.635149 5_4:-60294568 None:intergenic
TTCCAAATTCAGAAAGTACA+CGG 0.638247 5_4:+60293898 Msa0861120:CDS
CAAGTGACATGATCCACAGA+TGG 0.638519 5_4:-60296629 None:intergenic
TGTGATAGAGAAAAGATCAA+GGG 0.646031 5_4:+60294625 Msa0861120:CDS
AGTGTAGTTTAATGTTACAG+AGG 0.647387 5_4:+60296802 Msa0861120:three_prime_UTR
AGTAAAACCTACCATATCAG+AGG 0.647833 5_4:-60296026 None:intergenic
GATGCCTCAGATGAAAGCCA+TGG 0.676272 5_4:+60295181 Msa0861120:intron
GGTGTCGGAATTGGATCACG+AGG 0.685334 5_4:-60294553 None:intergenic
AACACCTGTGAGAATCAGAG+GGG 0.780299 5_4:+60293961 Msa0861120:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTGATTAATGTTATTT+TGG + chr5_4:60292900-60292919 Msa0861120:intron 10.0%
!! AATTCATAAAAATTGAAAAA+GGG - chr5_4:60293379-60293398 None:intergenic 10.0%
!! TGAATTATTAAAAATGATAA+TGG + chr5_4:60295056-60295075 Msa0861120:intron 10.0%
!! TTGTTTATTATATGATGAAA+AGG - chr5_4:60292551-60292570 None:intergenic 15.0%
!! TCCAAGAAAAAATTAAAATT+GGG - chr5_4:60292655-60292674 None:intergenic 15.0%
!! ATCCAAGAAAAAATTAAAAT+TGG - chr5_4:60292656-60292675 None:intergenic 15.0%
!! AAAGTAATTTAACACAAAAA+AGG - chr5_4:60293286-60293305 None:intergenic 15.0%
!! ATTCATAAAAATTGAAAAAG+GGG - chr5_4:60293378-60293397 None:intergenic 15.0%
!! CAATTCATAAAAATTGAAAA+AGG - chr5_4:60293380-60293399 None:intergenic 15.0%
!! AAAATCATATAATCTAAATC+GGG - chr5_4:60293406-60293425 None:intergenic 15.0%
!! CAAAATCATATAATCTAAAT+CGG - chr5_4:60293407-60293426 None:intergenic 15.0%
!! GACATAAAAAAATTATAAGT+TGG - chr5_4:60294239-60294258 None:intergenic 15.0%
!!! ACTTTCATTTTTTTAGTTTT+TGG + chr5_4:60294409-60294428 Msa0861120:intron 15.0%
!!! AATTTCATCTTTTTTCTAAC+TGG + chr5_4:60292505-60292524 Msa0861120:intron 20.0%
!!! ATTTCATCTTTTTTCTAACT+GGG + chr5_4:60292506-60292525 Msa0861120:intron 20.0%
!!! ACCCAATTTTAATTTTTTCT+TGG + chr5_4:60292651-60292670 Msa0861120:intron 20.0%
!!! TTTGAGACTAGAATAATAAT+GGG - chr5_4:60292706-60292725 None:intergenic 20.0%
!!! ATTTGAGACTAGAATAATAA+TGG - chr5_4:60292707-60292726 None:intergenic 20.0%
!! TTAATGTTCACATTATGAAA+AGG + chr5_4:60292755-60292774 Msa0861120:intron 20.0%
!!! ATGAAAAGGTGAAATTTTTA+AGG + chr5_4:60292769-60292788 Msa0861120:intron 20.0%
!!! TGAAAAGGTGAAATTTTTAA+GGG + chr5_4:60292770-60292789 Msa0861120:intron 20.0%
!! TTAATCATAAGCATGATATT+AGG + chr5_4:60292812-60292831 Msa0861120:intron 20.0%
!!! ACTTGTGTTATTAGAATATT+TGG + chr5_4:60292871-60292890 Msa0861120:intron 20.0%
!!! CATCTTAATAGTTTTTCTTA+TGG - chr5_4:60293145-60293164 None:intergenic 20.0%
!!! ACTTTTGTTATCAGATTATT+TGG + chr5_4:60293301-60293320 Msa0861120:intron 20.0%
!!! ATGATTGATTAGTGTTATTT+TGG + chr5_4:60293330-60293349 Msa0861120:intron 20.0%
!!! TAGTGTTATTTTGGTTTATT+TGG + chr5_4:60293339-60293358 Msa0861120:intron 20.0%
!!! TTCTGAATTTGGAATTTATT+TGG - chr5_4:60293892-60293911 None:intergenic 20.0%
!!! CATAGAATTCTTATTTCTAA+GGG - chr5_4:60295018-60295037 None:intergenic 20.0%
!!! ACATAGAATTCTTATTTCTA+AGG - chr5_4:60295019-60295038 None:intergenic 20.0%
!! CAATGATAATTTATATCAAG+AGG - chr5_4:60295430-60295449 None:intergenic 20.0%
!! CTTGATATAAATTATCATTG+AGG + chr5_4:60295430-60295449 Msa0861120:intron 20.0%
!! CATATTAGGATAAACATAAT+AGG - chr5_4:60295684-60295703 None:intergenic 20.0%
!!! AATACACAGAATTTTTGAAT+CGG - chr5_4:60295725-60295744 None:intergenic 20.0%
!!! CTTTTTCTCATGTTTTTTTT+TGG + chr5_4:60295982-60296001 Msa0861120:intron 20.0%
!!! AAGTAGTTTCAAATTCTTTT+TGG - chr5_4:60296065-60296084 None:intergenic 20.0%
!!! TTTAGCTTATTTCCATAAAT+TGG + chr5_4:60296327-60296346 Msa0861120:intron 20.0%
!! AATAAGAAAACACCAATTTA+TGG - chr5_4:60296342-60296361 None:intergenic 20.0%
!! AGAATTTCTTAGTGTTTAAT+TGG + chr5_4:60296699-60296718 Msa0861120:three_prime_UTR 20.0%
!! GAATTTCTTAGTGTTTAATT+GGG + chr5_4:60296700-60296719 Msa0861120:three_prime_UTR 20.0%
!! AATTTCTTAGTGTTTAATTG+GGG + chr5_4:60296701-60296720 Msa0861120:three_prime_UTR 20.0%
!!! CTACTTTTTATTTATCGATT+CGG - chr5_4:60297058-60297077 None:intergenic 20.0%
! GAAATAACAAAAAATTGTCG+CGG - chr5_4:60292258-60292277 None:intergenic 25.0%
!!! ACATTCATTCTGTTTTTGTT+TGG - chr5_4:60292315-60292334 None:intergenic 25.0%
! AAAATGATGTATAGACATGA+AGG - chr5_4:60292607-60292626 None:intergenic 25.0%
! TTGAGACTAGAATAATAATG+GGG - chr5_4:60292705-60292724 None:intergenic 25.0%
! ATAAGCATGATATTAGGATT+TGG + chr5_4:60292818-60292837 Msa0861120:intron 25.0%
!!! ATTAGGATTTGGTTTGTTAT+TGG + chr5_4:60292829-60292848 Msa0861120:intron 25.0%
!! TGAATGTTGATTATGTAGTA+AGG + chr5_4:60293061-60293080 Msa0861120:intron 25.0%
! GAAAAACTATTAAGATGTAG+AGG + chr5_4:60293148-60293167 Msa0861120:intron 25.0%
! TATTCAGTTGGATTGAAATA+TGG + chr5_4:60293172-60293191 Msa0861120:intron 25.0%
! TGGTTTATGATAGAACATTA+TGG + chr5_4:60293192-60293211 Msa0861120:intron 25.0%
! AATTGAAAAAGGGGATAAAA+AGG - chr5_4:60293369-60293388 None:intergenic 25.0%
! ATCTCTAATGTGTATCTATT+TGG + chr5_4:60294166-60294185 Msa0861120:intron 25.0%
! TCATAATAAGATTCGATTCA+CGG + chr5_4:60294321-60294340 Msa0861120:intron 25.0%
!!! TGTTATTTTACTTGTATGCT+TGG + chr5_4:60294799-60294818 Msa0861120:intron 25.0%
!! ATTTTCATGCCAATAGAAAA+TGG + chr5_4:60294864-60294883 Msa0861120:intron 25.0%
!! TGCATTAATCCATTTTCTAT+TGG - chr5_4:60294876-60294895 None:intergenic 25.0%
! ACTACATCAAAACGAAAATA+CGG - chr5_4:60295161-60295180 None:intergenic 25.0%
! GATTTAATGGGAAAAATATG+AGG + chr5_4:60295465-60295484 Msa0861120:intron 25.0%
! TTGATTTAAACTTAGAACGA+GGG - chr5_4:60295519-60295538 None:intergenic 25.0%
!! ATTGATTTAAACTTAGAACG+AGG - chr5_4:60295520-60295539 None:intergenic 25.0%
! TGTGCTTATCAATATATGAA+TGG - chr5_4:60295545-60295564 None:intergenic 25.0%
!! CATGTGAAATTTCAGTTTTA+GGG - chr5_4:60295617-60295636 None:intergenic 25.0%
!! TCATGTGAAATTTCAGTTTT+AGG - chr5_4:60295618-60295637 None:intergenic 25.0%
!! TATTTTCTTCTTCAATGTTG+TGG - chr5_4:60296179-60296198 None:intergenic 25.0%
! AAATAAGCTAAACCAACTTA+TGG - chr5_4:60296319-60296338 None:intergenic 25.0%
! AAACTATCATGGAAAACATA+TGG - chr5_4:60296366-60296385 None:intergenic 25.0%
! TCCATGATAGTTTATGAAAA+CGG + chr5_4:60296373-60296392 Msa0861120:intron 25.0%
! AATAGCTTATACATAAGAAC+AGG + chr5_4:60296423-60296442 Msa0861120:intron 25.0%
!! TTTTTACGTGACAACTTTTT+TGG + chr5_4:60296585-60296604 Msa0861120:three_prime_UTR 25.0%
!!! ACTTCATTTTTCTCAAAATC+TGG - chr5_4:60296661-60296680 None:intergenic 25.0%
! AAAATGAAGTCACAGTTTAA+AGG + chr5_4:60296671-60296690 Msa0861120:three_prime_UTR 25.0%
! CAATTAATACATTGCTAAGA+TGG - chr5_4:60296751-60296770 None:intergenic 25.0%
!!! GGCTTTCAATACTTTTTTTA+AGG + chr5_4:60296824-60296843 Msa0861120:three_prime_UTR 25.0%
!!! TTCAATACTTTTTTTAAGGC+AGG + chr5_4:60296828-60296847 Msa0861120:three_prime_UTR 25.0%
! CTTAAATTCAAATTACCAAC+TGG + chr5_4:60297029-60297048 Msa0861120:three_prime_UTR 25.0%
GATATTAAGAGGAAAGAAAG+TGG - chr5_4:60292284-60292303 None:intergenic 30.0%
!!! CATTCTGTTTTTGTTTGGTT+GGG - chr5_4:60292310-60292329 None:intergenic 30.0%
!!! TCATTCTGTTTTTGTTTGGT+TGG - chr5_4:60292311-60292330 None:intergenic 30.0%
! TTTACAGTTTACAGTGTTGA+TGG - chr5_4:60292446-60292465 None:intergenic 30.0%
TTGAAGTGTAGAAAAACAGT+GGG - chr5_4:60292487-60292506 None:intergenic 30.0%
ATTGAAGTGTAGAAAAACAG+TGG - chr5_4:60292488-60292507 None:intergenic 30.0%
GACATTAGAGAGTGAAATTT+GGG + chr5_4:60292968-60292987 Msa0861120:intron 30.0%
AGAACCTATAGTAGAAAAGA+TGG + chr5_4:60292992-60293011 Msa0861120:intron 30.0%
!! TAGAAAAGATGGTGGAAAAT+AGG + chr5_4:60293003-60293022 Msa0861120:intron 30.0%
AAACAAACAACAACAACAAC+CGG - chr5_4:60293243-60293262 None:intergenic 30.0%
!!! ATAGTTTTGATCTGCAGTAA+CGG - chr5_4:60293454-60293473 None:intergenic 30.0%
!! AGAAGATATAGCTCTAATCT+TGG - chr5_4:60293654-60293673 None:intergenic 30.0%
! TGGTTCCATTAAGTGATTTT+GGG + chr5_4:60293771-60293790 Msa0861120:CDS 30.0%
! TTCCAAATTCAGAAAGTACA+CGG + chr5_4:60293898-60293917 Msa0861120:CDS 30.0%
TCCTTCCTTGAAAAATATTG+AGG + chr5_4:60294012-60294031 Msa0861120:CDS 30.0%
! AACTGCCTCAATATTTTTCA+AGG - chr5_4:60294020-60294039 None:intergenic 30.0%
! CATTAGAGATTCGTATTGAT+TGG - chr5_4:60294156-60294175 None:intergenic 30.0%
GAGATTTATCGCAATGAATT+GGG - chr5_4:60294200-60294219 None:intergenic 30.0%
AACACTTGAATATTAGAGCA+TGG - chr5_4:60294367-60294386 None:intergenic 30.0%
GTGTTAATAATATCTTGCGT+TGG + chr5_4:60294382-60294401 Msa0861120:intron 30.0%
TGTGATAGAGAAAAGATCAA+GGG + chr5_4:60294625-60294644 Msa0861120:CDS 30.0%
AATAGAAATTAGGGTAAGAG+AGG - chr5_4:60294931-60294950 None:intergenic 30.0%
TCTCTTACCCTAATTTCTAT+TGG + chr5_4:60294930-60294949 Msa0861120:intron 30.0%
GACATCACCAATAGAAATTA+GGG - chr5_4:60294940-60294959 None:intergenic 30.0%
AGACATCACCAATAGAAATT+AGG - chr5_4:60294941-60294960 None:intergenic 30.0%
!! AATTTCTATTGGTGATGTCT+TGG + chr5_4:60294941-60294960 Msa0861120:intron 30.0%
GAGAATGCATCATATAGTAA+AGG - chr5_4:60295134-60295153 None:intergenic 30.0%
CTACATCAAAACGAAAATAC+GGG - chr5_4:60295160-60295179 None:intergenic 30.0%
AGACTTGTCAGAGATTTAAT+GGG + chr5_4:60295453-60295472 Msa0861120:intron 30.0%
! TAATGATTTTTCTCATGCAG+TGG - chr5_4:60295660-60295679 None:intergenic 30.0%
ATTCTCACAAGTTGCATATT+AGG - chr5_4:60295698-60295717 None:intergenic 30.0%
AATTCAACTCTCTTGAAACA+TGG + chr5_4:60295785-60295804 Msa0861120:intron 30.0%
GGTAAATATAAGTGTGTGTA+TGG - chr5_4:60295899-60295918 None:intergenic 30.0%
ATTTACCTTGAAGAACATTG+AGG + chr5_4:60295912-60295931 Msa0861120:CDS 30.0%
AATATTACCTCTGATATGGT+AGG + chr5_4:60296019-60296038 Msa0861120:CDS 30.0%
GCAGATAAGCACAAATAAAT+AGG - chr5_4:60296238-60296257 None:intergenic 30.0%
ATTTATTTGTGCTTATCTGC+TGG + chr5_4:60296238-60296257 Msa0861120:intron 30.0%
! AAGCACTTGAGAAATTGTTT+TGG + chr5_4:60296264-60296283 Msa0861120:intron 30.0%
!!! AAATTGTTTTGGAGAGCTTA+CGG + chr5_4:60296275-60296294 Msa0861120:intron 30.0%
! ACCGTTTTCATAAACTATCA+TGG - chr5_4:60296377-60296396 None:intergenic 30.0%
ATTAAACTACACTGTTGCAT+GGG - chr5_4:60296795-60296814 None:intergenic 30.0%
AGTGTAGTTTAATGTTACAG+AGG + chr5_4:60296802-60296821 Msa0861120:three_prime_UTR 30.0%
GTGTAGTTTAATGTTACAGA+GGG + chr5_4:60296803-60296822 Msa0861120:three_prime_UTR 30.0%
!! CTCTTCTTTTGGTTAATTCA+AGG + chr5_4:60296937-60296956 Msa0861120:three_prime_UTR 30.0%
!! TCTTTTGGTTAATTCAAGGT+TGG + chr5_4:60296941-60296960 Msa0861120:three_prime_UTR 30.0%
!!! GCTTTTTAAGTTGTGAAAAC+TGG + chr5_4:60296972-60296991 Msa0861120:three_prime_UTR 30.0%
! TTAAGTTGTGAAAACTGGAT+TGG + chr5_4:60296977-60296996 Msa0861120:three_prime_UTR 30.0%
TGGTTGGGATAGATATTAAG+AGG - chr5_4:60292295-60292314 None:intergenic 35.0%
GAATGTGACTACATAGTACT+TGG + chr5_4:60292337-60292356 Msa0861120:five_prime_UTR 35.0%
! ATCTAAGGAGCATGAATCAT+AGG - chr5_4:60292410-60292429 None:intergenic 35.0%
! ACATGAAGGTATGAGATTGA+AGG - chr5_4:60292593-60292612 None:intergenic 35.0%
CGACATTAGAGAGTGAAATT+TGG + chr5_4:60292967-60292986 Msa0861120:intron 35.0%
ACCTATAGTAGAAAAGATGG+TGG + chr5_4:60292995-60293014 Msa0861120:intron 35.0%
! TCCACCATCTTTTCTACTAT+AGG - chr5_4:60292999-60293018 None:intergenic 35.0%
AGATGTAGAGGTTATTCAGT+TGG + chr5_4:60293160-60293179 Msa0861120:intron 35.0%
AACAAACAACAACAACAACC+GGG - chr5_4:60293242-60293261 None:intergenic 35.0%
CTCAACAGTTCTATCTATCA+AGG - chr5_4:60293481-60293500 None:intergenic 35.0%
!! AAGTTGGTAATGATGAGAGA+TGG - chr5_4:60293550-60293569 None:intergenic 35.0%
AGACATGAAGAAACAGAAGT+TGG - chr5_4:60293566-60293585 None:intergenic 35.0%
TTCCGATTTCGAATTGAAAG+CGG - chr5_4:60293623-60293642 None:intergenic 35.0%
ATGTCGAATATAACTGCAAG+TGG - chr5_4:60293725-60293744 None:intergenic 35.0%
! CTGGTTCCATTAAGTGATTT+TGG + chr5_4:60293770-60293789 Msa0861120:CDS 35.0%
!!! CCATTAAGTGATTTTGGGTT+CGG + chr5_4:60293776-60293795 Msa0861120:CDS 35.0%
GATACTATTTGTGCTCAGTA+TGG + chr5_4:60293850-60293869 Msa0861120:CDS 35.0%
!!! GCCTCAATATTTTTCAAGGA+AGG - chr5_4:60294016-60294035 None:intergenic 35.0%
TAGAGTCAGCAATGAAACTA+TGG - chr5_4:60294062-60294081 None:intergenic 35.0%
!! TCATTGCTGACTCTAATACA+TGG + chr5_4:60294067-60294086 Msa0861120:intron 35.0%
ACACTAGTCACATGTATCAT+AGG - chr5_4:60294103-60294122 None:intergenic 35.0%
CGAGATTTATCGCAATGAAT+TGG - chr5_4:60294201-60294220 None:intergenic 35.0%
GTGTGATAGAGAAAAGATCA+AGG + chr5_4:60294624-60294643 Msa0861120:CDS 35.0%
TTTCATCCAAACTTACTCCT+TGG - chr5_4:60294654-60294673 None:intergenic 35.0%
AGGAGTAAGTTTGGATGAAA+TGG + chr5_4:60294654-60294673 Msa0861120:CDS 35.0%
AGTAAGTTTGGATGAAATGG+TGG + chr5_4:60294657-60294676 Msa0861120:CDS 35.0%
GTAAGTTTGGATGAAATGGT+GGG + chr5_4:60294658-60294677 Msa0861120:CDS 35.0%
TATTGTCAACAGCTACTCAT+TGG + chr5_4:60294720-60294739 Msa0861120:CDS 35.0%
!!! TGAACGAGTTTTTGCTGTTA+TGG + chr5_4:60294744-60294763 Msa0861120:CDS 35.0%
TCTTGGACATAATCTGACTT+TGG + chr5_4:60294958-60294977 Msa0861120:intron 35.0%
AATATGTGTCTGCAGCTTTA+TGG + chr5_4:60295085-60295104 Msa0861120:intron 35.0%
TCTAGATGTTCAACCTTTGT+TGG + chr5_4:60295205-60295224 Msa0861120:CDS 35.0%
AACTCTCAACTTCCTTCAAT+AGG - chr5_4:60295250-60295269 None:intergenic 35.0%
GAGACTTGTCAGAGATTTAA+TGG + chr5_4:60295452-60295471 Msa0861120:intron 35.0%
TCAAACCTCAATGTTCTTCA+AGG - chr5_4:60295920-60295939 None:intergenic 35.0%
GCAGAATATTACCTCTGATA+TGG + chr5_4:60296015-60296034 Msa0861120:intron 35.0%
AGTAAAACCTACCATATCAG+AGG - chr5_4:60296029-60296048 None:intergenic 35.0%
! TCTGATATGGTAGGTTTTAC+TGG + chr5_4:60296028-60296047 Msa0861120:CDS 35.0%
TACTTATCAAGAATCTCAGC+AGG + chr5_4:60296080-60296099 Msa0861120:CDS 35.0%
CTTATGACATGTCCATAAGT+TGG + chr5_4:60296304-60296323 Msa0861120:intron 35.0%
AATTAAGCTGTTCATCCAAC+AGG + chr5_4:60296466-60296485 Msa0861120:intron 35.0%
ATTAAGCTGTTCATCCAACA+GGG + chr5_4:60296467-60296486 Msa0861120:intron 35.0%
GCAAGAAGAAAGATAGACTT+AGG - chr5_4:60296493-60296512 None:intergenic 35.0%
CTGATAAAAGTTGTCTTCTG+TGG + chr5_4:60296521-60296540 Msa0861120:intron 35.0%
TTGGTTTCTGCTCAAGTTAT+TGG + chr5_4:60296604-60296623 Msa0861120:three_prime_UTR 35.0%
CATTAAACTACACTGTTGCA+TGG - chr5_4:60296796-60296815 None:intergenic 35.0%
! TCTTAGTTGCTCTCTTCTTT+TGG + chr5_4:60296926-60296945 Msa0861120:three_prime_UTR 35.0%
GTTGCTTGAGAACTAGTATT+TGG + chr5_4:60297003-60297022 Msa0861120:three_prime_UTR 35.0%
GTCTTTGTGAAATACTCACC+TGG - chr5_4:60292230-60292249 None:intergenic 40.0%
GGTGAGTATTTCACAAAGAC+CGG + chr5_4:60292230-60292249 Msa0861120:five_prime_UTR 40.0%
CTGTTCTCGTTTCTTCGATT+CGG + chr5_4:60292373-60292392 Msa0861120:five_prime_UTR 40.0%
GGAAGAGAGAGAGAAATCTA+AGG - chr5_4:60292425-60292444 None:intergenic 40.0%
!! AAGATGGTGGAAAATAGGCT+TGG + chr5_4:60293008-60293027 Msa0861120:intron 40.0%
!! AGATGGTGGAAAATAGGCTT+GGG + chr5_4:60293009-60293028 Msa0861120:intron 40.0%
AAAATAGGCTTGGGTGGTTT+GGG + chr5_4:60293018-60293037 Msa0861120:intron 40.0%
ACAAACAACAACAACAACCG+GGG - chr5_4:60293241-60293260 None:intergenic 40.0%
!!! GAACTGTTGAGTTTTGAGCA+AGG + chr5_4:60293490-60293509 Msa0861120:five_prime_UTR 40.0%
!! ATGATGAGAGATGGATTGCA+GGG - chr5_4:60293541-60293560 None:intergenic 40.0%
!! AATGATGAGAGATGGATTGC+AGG - chr5_4:60293542-60293561 None:intergenic 40.0%
TCATGTCTGATTTCTCTACC+AGG + chr5_4:60293578-60293597 Msa0861120:CDS 40.0%
GCAAACTTTAATGAGTTGCC+TGG - chr5_4:60293599-60293618 None:intergenic 40.0%
TCGACATTCCTAGACGTATT+TGG + chr5_4:60293738-60293757 Msa0861120:CDS 40.0%
GTTTGCTTCCAAATACGTCT+AGG - chr5_4:60293749-60293768 None:intergenic 40.0%
ACGTATTTGGAAGCAAACAC+TGG + chr5_4:60293751-60293770 Msa0861120:CDS 40.0%
CCGAACCCAAAATCACTTAA+TGG - chr5_4:60293779-60293798 None:intergenic 40.0%
!!! GTTGGACTGTTTTTGGTATC+TGG + chr5_4:60293824-60293843 Msa0861120:CDS 40.0%
TATTTGTGCTCAGTATGGCT+TGG + chr5_4:60293855-60293874 Msa0861120:CDS 40.0%
TGCCGTGTACTTTCTGAATT+TGG - chr5_4:60293903-60293922 None:intergenic 40.0%
AAATATTGAGGCAGTTGTCG+AGG + chr5_4:60294024-60294043 Msa0861120:CDS 40.0%
ACCAAAGAACTCATTCGTTG+AGG + chr5_4:60294486-60294505 Msa0861120:CDS 40.0%
ACCTCAACGAATGAGTTCTT+TGG - chr5_4:60294490-60294509 None:intergenic 40.0%
! TAACCAGTCAGGTCTTTTGA+TGG + chr5_4:60294510-60294529 Msa0861120:CDS 40.0%
TTTCCATCAAAAGACCTGAC+TGG - chr5_4:60294516-60294535 None:intergenic 40.0%
TTAGCACATTCTTCGTCAAG+AGG - chr5_4:60294589-60294608 None:intergenic 40.0%
GACGAAGAATGTGCTAAAGA+AGG + chr5_4:60294592-60294611 Msa0861120:CDS 40.0%
GGACATAATCTGACTTTGGT+AGG + chr5_4:60294962-60294981 Msa0861120:intron 40.0%
AATCATCAGAAGCTAGGGTA+AGG - chr5_4:60295283-60295302 None:intergenic 40.0%
CCTCAAATCATCAGAAGCTA+GGG - chr5_4:60295288-60295307 None:intergenic 40.0%
ACCTCAAATCATCAGAAGCT+AGG - chr5_4:60295289-60295308 None:intergenic 40.0%
GTCAGTTGTCTAAACACCAA+TGG + chr5_4:60295307-60295326 Msa0861120:intron 40.0%
GCTTCTCTGTACGACTAATT+TGG + chr5_4:60295329-60295348 Msa0861120:intron 40.0%
GGGAAAAATATGAGGTTGTG+TGG + chr5_4:60295473-60295492 Msa0861120:intron 40.0%
CGCGCAAATCTTATCACATA+AGG - chr5_4:60295571-60295590 None:intergenic 40.0%
! TTTAGGGTCTTCAACTGAAC+AGG - chr5_4:60295601-60295620 None:intergenic 40.0%
TCCCTTTGTGTGTATTCAGA+AGG + chr5_4:60295824-60295843 Msa0861120:intron 40.0%
CCCTTCTGAATACACACAAA+GGG - chr5_4:60295828-60295847 None:intergenic 40.0%
CCCTTTGTGTGTATTCAGAA+GGG + chr5_4:60295825-60295844 Msa0861120:intron 40.0%
TAAGTGTGTGTATGGACTTC+TGG - chr5_4:60295891-60295910 None:intergenic 40.0%
! CCTGTTATATGCTACTTCAC+TGG - chr5_4:60296125-60296144 None:intergenic 40.0%
CCAGTGAAGTAGCATATAAC+AGG + chr5_4:60296122-60296141 Msa0861120:three_prime_UTR 40.0%
GTTGTGGCAGAGGAAAAATA+TGG - chr5_4:60296163-60296182 None:intergenic 40.0%
CTTAGTGTTTAATTGGGGTG+AGG + chr5_4:60296706-60296725 Msa0861120:three_prime_UTR 40.0%
!! GTTGTGAAAACTGGATTGGT+TGG + chr5_4:60296981-60297000 Msa0861120:three_prime_UTR 40.0%
!! TTATCGATTCGGAAACCAGT+TGG - chr5_4:60297047-60297066 None:intergenic 40.0%
ACAAAAAATTGTCGCGGTGC+CGG - chr5_4:60292252-60292271 None:intergenic 45.0%
GTGCTAAGACTAGACGAGAT+AGG + chr5_4:60292933-60292952 Msa0861120:intron 45.0%
GAAAATAGGCTTGGGTGGTT+TGG + chr5_4:60293017-60293036 Msa0861120:intron 45.0%
AAGGAGAGTAGACCAGATGA+AGG + chr5_4:60293080-60293099 Msa0861120:intron 45.0%
AGGAGAGTAGACCAGATGAA+GGG + chr5_4:60293081-60293100 Msa0861120:intron 45.0%
!!! CTGTTGAGTTTTGAGCAAGG+AGG + chr5_4:60293493-60293512 Msa0861120:five_prime_UTR 45.0%
!!! TGAGTTTTGAGCAAGGAGGT+TGG + chr5_4:60293497-60293516 Msa0861120:five_prime_UTR 45.0%
!! CAAGGAGGTTGGTTTGAAGA+TGG + chr5_4:60293508-60293527 Msa0861120:exon 45.0%
!! GAGGTTGGTTTGAAGATGGT+CGG + chr5_4:60293512-60293531 Msa0861120:exon 45.0%
!! AGGTTGGTTTGAAGATGGTC+GGG + chr5_4:60293513-60293532 Msa0861120:exon 45.0%
! CGCCGCTTTCAATTCGAAAT+CGG + chr5_4:60293618-60293637 Msa0861120:CDS 45.0%
GTTCGGTCGTAATAGTGTCT+GGG + chr5_4:60293793-60293812 Msa0861120:CDS 45.0%
GTAATAGTGTCTGGGAAGGT+GGG + chr5_4:60293801-60293820 Msa0861120:CDS 45.0%
TAATAGTGTCTGGGAAGGTG+GGG + chr5_4:60293802-60293821 Msa0861120:CDS 45.0%
! TTCGAGTTTGCTCAAGCTTG+TGG + chr5_4:60293926-60293945 Msa0861120:CDS 45.0%
CAAGCTTGTGGTATAAGCAC+TGG + chr5_4:60293938-60293957 Msa0861120:CDS 45.0%
GAACACCTGTGAGAATCAGA+GGG + chr5_4:60293960-60293979 Msa0861120:CDS 45.0%
AACACCTGTGAGAATCAGAG+GGG + chr5_4:60293961-60293980 Msa0861120:CDS 45.0%
! GCAGTTGTCGAGGTTTGTTT+CGG + chr5_4:60294034-60294053 Msa0861120:intron 45.0%
TTCGTTGAGGTTAACCAGTC+AGG + chr5_4:60294499-60294518 Msa0861120:CDS 45.0%
GAAAAGATCAAGGGTCACCA+AGG + chr5_4:60294634-60294653 Msa0861120:CDS 45.0%
AGCAAGACCACTTCTTACAC+AGG + chr5_4:60294771-60294790 Msa0861120:CDS 45.0%
CATCACACCTGTGTAAGAAG+TGG - chr5_4:60294781-60294800 None:intergenic 45.0%
TTACTTGTATGCTTGGCACG+TGG + chr5_4:60294806-60294825 Msa0861120:intron 45.0%
! ATTAGGGTAAGAGAGGCACA+TGG - chr5_4:60294924-60294943 None:intergenic 45.0%
! AGGTTGAACATCTAGAGCCA+TGG - chr5_4:60295201-60295220 None:intergenic 45.0%
CCCTAGCTTCTGATGATTTG+AGG + chr5_4:60295285-60295304 Msa0861120:CDS 45.0%
TAGTCGTACAGAGAAGCCAT+TGG - chr5_4:60295326-60295345 None:intergenic 45.0%
TAGCACATTGTCGTTCGTGT+GGG + chr5_4:60295384-60295403 Msa0861120:intron 45.0%
GCCCTTCTGAATACACACAA+AGG - chr5_4:60295829-60295848 None:intergenic 45.0%
CTTCTTCAATGTTGTGGCAG+AGG - chr5_4:60296173-60296192 None:intergenic 45.0%
AAGATAGACTTAGGCCCTGT+TGG - chr5_4:60296484-60296503 None:intergenic 45.0%
CAAGTGACATGATCCACAGA+TGG - chr5_4:60296632-60296651 None:intergenic 45.0%
!!! ATTTTTAATAATTCATTTTA+CGG - chr5_4:60295051-60295070 None:intergenic 5.0%
!!! TAGTAATTTAAATTTTTTTA+AGG + chr5_4:60296197-60296216 Msa0861120:intron 5.0%
!!! AGTAATTTAAATTTTTTTAA+GGG + chr5_4:60296198-60296217 Msa0861120:intron 5.0%
TGGTGGAAAATAGGCTTGGG+TGG + chr5_4:60293012-60293031 Msa0861120:intron 50.0%
TGATTCGACTGCCCTTCATC+TGG - chr5_4:60293095-60293114 None:intergenic 50.0%
ACAACAACAACAACCGGGGT+CGG - chr5_4:60293237-60293256 None:intergenic 50.0%
! GGTTCGGTCGTAATAGTGTC+TGG + chr5_4:60293792-60293811 Msa0861120:CDS 50.0%
GGTCGTAATAGTGTCTGGGA+AGG + chr5_4:60293797-60293816 Msa0861120:CDS 50.0%
CGTAATAGTGTCTGGGAAGG+TGG + chr5_4:60293800-60293819 Msa0861120:CDS 50.0%
! AGGTGGGGTTGGACTGTTTT+TGG + chr5_4:60293817-60293836 Msa0861120:CDS 50.0%
GGAACACCTGTGAGAATCAG+AGG + chr5_4:60293959-60293978 Msa0861120:CDS 50.0%
AGAATCAGAGGGGTCACTGT+TGG + chr5_4:60293971-60293990 Msa0861120:CDS 50.0%
!! CCAACTGAAGGTGTCGGAAT+TGG - chr5_4:60294565-60294584 None:intergenic 50.0%
CCAATTCCGACACCTTCAGT+TGG + chr5_4:60294562-60294581 Msa0861120:CDS 50.0%
! AGAGGACCAACTGAAGGTGT+CGG - chr5_4:60294571-60294590 None:intergenic 50.0%
TCGTCAAGAGGACCAACTGA+AGG - chr5_4:60294577-60294596 None:intergenic 50.0%
GGGTCACCAAGGAGTAAGTT+TGG + chr5_4:60294645-60294664 Msa0861120:CDS 50.0%
GTGGGAATATACACCCGTCT+TGG + chr5_4:60294676-60294695 Msa0861120:CDS 50.0%
CTCTACATCTCGTCCAAGAC+GGG - chr5_4:60294692-60294711 None:intergenic 50.0%
CCTCTACATCTCGTCCAAGA+CGG - chr5_4:60294693-60294712 None:intergenic 50.0%
CGTCTTGGACGAGATGTAGA+GGG + chr5_4:60294691-60294710 Msa0861120:CDS 50.0%
GGACGAGATGTAGAGGGAAT+TGG + chr5_4:60294697-60294716 Msa0861120:CDS 50.0%
GATGCCTCAGATGAAAGCCA+TGG + chr5_4:60295181-60295200 Msa0861120:intron 50.0%
AGAGCCATGGCTTTCATCTG+AGG - chr5_4:60295188-60295207 None:intergenic 50.0%
TGTTCAACCTTTGTTGGCCG+AGG + chr5_4:60295211-60295230 Msa0861120:CDS 50.0%
CCTTCAATAGGCCGCTATCA+CGG - chr5_4:60295238-60295257 None:intergenic 50.0%
AGAAGCTAGGGTAAGGCTTC+GGG - chr5_4:60295276-60295295 None:intergenic 50.0%
CAGAAGCTAGGGTAAGGCTT+CGG - chr5_4:60295277-60295296 None:intergenic 50.0%
GTAGCACATTGTCGTTCGTG+TGG + chr5_4:60295383-60295402 Msa0861120:intron 50.0%
AGCACATTGTCGTTCGTGTG+GGG + chr5_4:60295385-60295404 Msa0861120:intron 50.0%
GATCAGCTCAGCGTTCTCAT+TGG - chr5_4:60295869-60295888 None:intergenic 50.0%
CAAGTTATTGGCGCCATCTG+TGG + chr5_4:60296616-60296635 Msa0861120:three_prime_UTR 50.0%
TTGATCCATGTAGCCGACCC+CGG + chr5_4:60293221-60293240 Msa0861120:intron 55.0%
GTGACCCCTCTGATTCTCAC+AGG - chr5_4:60293968-60293987 None:intergenic 55.0%
! GGTGTCGGAATTGGATCACG+AGG - chr5_4:60294556-60294575 None:intergenic 55.0%
CCGTCTTGGACGAGATGTAG+AGG + chr5_4:60294690-60294709 Msa0861120:CDS 55.0%
!! CCGTGATAGCGGCCTATTGA+AGG + chr5_4:60295235-60295254 Msa0861120:CDS 55.0%
GCACATTGTCGTTCGTGTGG+GGG + chr5_4:60295386-60295405 Msa0861120:intron 55.0%
ATGAGGTTGTGTGGCCTGCT+TGG + chr5_4:60295482-60295501 Msa0861120:intron 55.0%
TGAGGTTGTGTGGCCTGCTT+GGG + chr5_4:60295483-60295502 Msa0861120:intron 55.0%
!! TCTGTGGTGTTGATGCGTGC+AGG + chr5_4:60296537-60296556 Msa0861120:intron 55.0%
AACAACCGGGGTCGGCTACA+TGG - chr5_4:60293229-60293248 None:intergenic 60.0%
AGTGTCTGGGAAGGTGGGGT+TGG + chr5_4:60293806-60293825 Msa0861120:CDS 60.0%
TCACGGACCTCGGCCAACAA+AGG - chr5_4:60295221-60295240 None:intergenic 60.0%
TTGGCCGAGGTCCGTGATAG+CGG + chr5_4:60295224-60295243 Msa0861120:CDS 60.0%
TAGGCCGCTATCACGGACCT+CGG - chr5_4:60295231-60295250 None:intergenic 60.0%
GGGCATCTGTGTTCCCAAGC+AGG - chr5_4:60295499-60295518 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 60292216 60297082 60292216 ID=Msa0861120;Name=Msa0861120
chr5_4 mRNA 60292216 60297082 60292216 ID=Msa0861120-mRNA-1;Parent=Msa0861120;Name=Msa0861120-mRNA-1;_AED=0.17;_eAED=0.17;_QI=336|1|1|1|0.66|0.42|7|556|382
chr5_4 exon 60292216 60292465 60292216 ID=Msa0861120-mRNA-1:exon:18617;Parent=Msa0861120-mRNA-1
chr5_4 exon 60293441 60294045 60293441 ID=Msa0861120-mRNA-1:exon:18618;Parent=Msa0861120-mRNA-1
chr5_4 exon 60294463 60294792 60294463 ID=Msa0861120-mRNA-1:exon:18619;Parent=Msa0861120-mRNA-1
chr5_4 exon 60295191 60295306 60295191 ID=Msa0861120-mRNA-1:exon:18620;Parent=Msa0861120-mRNA-1
chr5_4 exon 60295843 60295933 60295843 ID=Msa0861120-mRNA-1:exon:18621;Parent=Msa0861120-mRNA-1
chr5_4 exon 60296019 60296143 60296019 ID=Msa0861120-mRNA-1:exon:18622;Parent=Msa0861120-mRNA-1
chr5_4 exon 60296559 60297082 60296559 ID=Msa0861120-mRNA-1:exon:18623;Parent=Msa0861120-mRNA-1
chr5_4 five_prime_UTR 60292216 60292465 60292216 ID=Msa0861120-mRNA-1:five_prime_utr;Parent=Msa0861120-mRNA-1
chr5_4 five_prime_UTR 60293441 60293526 60293441 ID=Msa0861120-mRNA-1:five_prime_utr;Parent=Msa0861120-mRNA-1
chr5_4 CDS 60293527 60294045 60293527 ID=Msa0861120-mRNA-1:cds;Parent=Msa0861120-mRNA-1
chr5_4 CDS 60294463 60294792 60294463 ID=Msa0861120-mRNA-1:cds;Parent=Msa0861120-mRNA-1
chr5_4 CDS 60295191 60295306 60295191 ID=Msa0861120-mRNA-1:cds;Parent=Msa0861120-mRNA-1
chr5_4 CDS 60295843 60295933 60295843 ID=Msa0861120-mRNA-1:cds;Parent=Msa0861120-mRNA-1
chr5_4 CDS 60296019 60296111 60296019 ID=Msa0861120-mRNA-1:cds;Parent=Msa0861120-mRNA-1
chr5_4 three_prime_UTR 60296112 60296143 60296112 ID=Msa0861120-mRNA-1:three_prime_utr;Parent=Msa0861120-mRNA-1
chr5_4 three_prime_UTR 60296559 60297082 60296559 ID=Msa0861120-mRNA-1:three_prime_utr;Parent=Msa0861120-mRNA-1
Gene Sequence

>Msa0861120

ATGGTCGGGAACCCTGCAATCCATCTCTCATCATTACCAACTTCTGTTTCTTCATGTCTGATTTCTCTACCAGGCAACTCATTAAAGTTTGCGCCGCTTTCAATTCGAAATCGGAAGAAAATCACCAAGATTAGAGCTATATCTTCTGATACAAGCAATGTCAAAAAACAGTCATCTAGTTCAGAAACAAAGAATCCACTTGCAGTTATATTCGACATTCCTAGACGTATTTGGAAGCAAACACTGGTTCCATTAAGTGATTTTGGGTTCGGTCGTAATAGTGTCTGGGAAGGTGGGGTTGGACTGTTTTTGGTATCTGGTACGATACTATTTGTGCTCAGTATGGCTTGGTTGAGAGCATTCCAAATAAATTCCAAATTCAGAAAGTACACGGCAGTTTTCGAGTTTGCTCAAGCTTGTGGTATAAGCACTGGAACACCTGTGAGAATCAGAGGGGTCACTGTTGGCAATGTCATTCGCGTTAATCCTTCCTTGAAAAATATTGAGGCAGTTGTCGAGATAGAAGACGATAAAACAATTATACCAAAGAACTCATTCGTTGAGGTTAACCAGTCAGGTCTTTTGATGGAAACTAAAATCGACATCAATCCTCGTGATCCAATTCCGACACCTTCAGTTGGTCCTCTTGACGAAGAATGTGCTAAAGAAGGTCTCATTGTGTGTGATAGAGAAAAGATCAAGGGTCACCAAGGAGTAAGTTTGGATGAAATGGTGGGAATATACACCCGTCTTGGACGAGATGTAGAGGGAATTGGTATTGTCAACAGCTACTCATTGGCTGAACGAGTTTTTGCTGTTATGGAAGAAGCAAGACCACTTCTTACACAGATGAAAGCCATGGCTCTAGATGTTCAACCTTTGTTGGCCGAGGTCCGTGATAGCGGCCTATTGAAGGAAGTTGAGAGTTTGACCCGAAGCCTTACCCTAGCTTCTGATGATTTGAGAAGGGCGCATTCAACGATTATGACCAATGAGAACGCTGAGCTGATCCAGAAGTCCATACACACACTTATATTTACCTTGAAGAACATTGAGAATATTACCTCTGATATGGTAGGTTTTACTGGCGATGAAAGTACCAAAAAGAATTTGAAACTACTTATCAAGAATCTCAGCAGGTTATTGTGA
Protein sequence

>Msa0861120

MVGNPAIHLSSLPTSVSSCLISLPGNSLKFAPLSIRNRKKITKIRAISSDTSNVKKQSSSSETKNPLAVIFDIPRRIWKQTLVPLSDFGFGRNSVWEGGVGLFLVSGTILFVLSMAWLRAFQINSKFRKYTAVFEFAQACGISTGTPVRIRGVTVGNVIRVNPSLKNIEAVVEIEDDKTIIPKNSFVEVNQSGLLMETKIDINPRDPIPTPSVGPLDEECAKEGLIVCDREKIKGHQGVSLDEMVGIYTRLGRDVEGIGIVNSYSLAERVFAVMEEARPLLTQMKAMALDVQPLLAEVRDSGLLKEVESLTRSLTLASDDLRRAHSTIMTNENAELIQKSIHTLIFTLKNIENITSDMVGFTGDESTKKNLKLLIKNLSRLL*