AlfalfaGEDB | Msa1130420

M. sativa cultivar zhongmu-4 / Msa1130420

KEGG: K22155|K22156
GO: GO:0008150 GO:0009893 GO:0010604 GO:0010638 GO:0019222 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252
PFAM: PF00855.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1130420	XP_013450600.1	90.249	964	41	4	1	911	1	964	0.0	1779

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1130420	sp\|Q9M364\|ATX3_ARATH	51.739	949	355	12	60	911	76	1018	0.0	951

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1130420	A0A072U651	90.249	964	41	4	1	911	1	964	0.0	1779

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TFs/TRs:

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Gene ID	Type	Classification
Msa1130420	TR	PHD

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005020	Msa1130420	0.815170	1.060362e-51	-8.615850e-47
Msa0016040	Msa1130420	0.846868	1.657660e-59	-8.615850e-47
Msa0019930	Msa1130420	0.811733	6.039160e-51	-8.615850e-47
Msa0020540	Msa1130420	0.835850	1.319496e-56	-8.615850e-47
Msa0025580	Msa1130420	0.818821	1.604302e-52	-8.615850e-47
Msa0027280	Msa1130420	0.810220	1.284656e-50	-8.615850e-47
Msa0032460	Msa1130420	0.802163	6.391086e-49	-8.615850e-47
Msa0032980	Msa1130420	0.809259	2.066820e-50	-8.615850e-47
Msa0035140	Msa1130420	0.851105	1.102148e-60	-8.615850e-47
Msa0035340	Msa1130420	0.809231	2.095888e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1130420	MtrunA17_Chr7g0275611	90.249	964	41	4	1	911	1	964	0.0	1779
Msa1130420	MtrunA17_Chr8g0347071	66.787	834	205	7	149	911	117	949	0.0	1144
Msa1130420	MtrunA17_Chr3g0126701	50.305	982	375	17	39	911	86	1063	0.0	921
Msa1130420	MtrunA17_Chr1g0147121	50.318	944	378	11	57	911	93	1034	0.0	898
Msa1130420	MtrunA17_Chr1g0149611	45.455	143	69	4	775	911	369	508	1.20e-30	127
Msa1130420	MtrunA17_Chr7g0221611	43.125	160	83	4	755	911	891	1045	1.42e-30	130
Msa1130420	MtrunA17_Chr1g0149581	47.183	142	68	4	775	911	1527	1666	2.70e-30	129
Msa1130420	MtrunA17_Chr2g0297191	41.958	143	78	3	770	911	1033	1171	4.30e-29	125
Msa1130420	MtrunA17_Chr1g0201621	38.816	152	87	4	761	910	76	223	2.14e-20	95.5
Msa1130420	MtrunA17_Chr1g0201311	38.158	152	88	4	761	910	76	223	7.47e-20	94.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1130420	AT3G61740.2	53.939	914	352	13	60	911	76	982	0.0	964
Msa1130420	AT3G61740.1	51.739	949	355	12	60	911	76	1018	0.0	951
Msa1130420	AT5G53430.1	48.125	960	381	12	57	911	96	1043	0.0	883
Msa1130420	AT4G27910.1	48.672	941	385	13	57	911	99	1027	0.0	863
Msa1130420	AT1G05830.2	38.542	192	105	5	728	911	873	1059	1.22e-31	134
Msa1130420	AT1G05830.2	28.859	149	95	4	483	621	586	733	3.43e-15	80.9
Msa1130420	AT1G05830.4	38.542	192	105	5	728	911	873	1059	1.22e-31	134
Msa1130420	AT1G05830.4	28.859	149	95	4	483	621	586	733	3.43e-15	80.9
Msa1130420	AT1G05830.1	38.542	192	105	5	728	911	873	1059	1.22e-31	134
Msa1130420	AT1G05830.1	28.859	149	95	4	483	621	586	733	3.43e-15	80.9

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Find 228 sgRNAs with CRISPR-Local

Find 620 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCAGGCATTGGCTGAA+TGG	0.444691	7_3:-82585998	Msa1130420:CDS
AAAATAAGTACCTTATTGGG+AGG	0.624661	7_3:+82583431	None:intergenic
AAAATCAGCTATTCAAGGGT+GGG	0.563568	7_3:-82582819	Msa1130420:CDS
AAAATTCAATATATGGAGTT+TGG	0.284282	7_3:+82580085	None:intergenic
AAACATAACGCAAATTGCAT+CGG	0.553396	7_3:+82588249	None:intergenic
AAACATAGTGTGAAAGTAGA+AGG	0.474293	7_3:-82585942	Msa1130420:CDS
AAACCCAGGAAGTAAAATCT+TGG	0.450551	7_3:+82585154	None:intergenic
AAAGCAGGCATTGGCTGAAT+GGG	0.423928	7_3:-82585997	Msa1130420:CDS
AAATCAGCTATTCAAGGGTG+GGG	0.556616	7_3:-82582818	Msa1130420:CDS
AAATTAAAATCACCTGGCCT+TGG	0.481839	7_3:+82587786	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAACGCGTTATTGAGTTT+GGG	+	chr7_3:82580177-82580196	None:intergenic	30.0%
CAAATCAAAAGATCTAAGCT+CGG	-	chr7_3:82580366-82580385	Msa1130420:CDS	30.0%
AGCATTAAAAAGACGGTTAA+AGG	-	chr7_3:82580522-82580541	Msa1130420:intron	30.0%
GCATTAAAAAGACGGTTAAA+GGG	-	chr7_3:82580523-82580542	Msa1130420:intron	30.0%
TTGATGAAAAGGGTAAAAAG+GGG	-	chr7_3:82580586-82580605	Msa1130420:intron	30.0%
TTCATTTGGGTGATATAGTT+TGG	-	chr7_3:82580634-82580653	Msa1130420:CDS	30.0%
TCATTTGGGTGATATAGTTT+GGG	-	chr7_3:82580635-82580654	Msa1130420:CDS	30.0%
AAACATAACGCAAATTGCAT+CGG	+	chr7_3:82580751-82580770	None:intergenic	30.0%
CTCTATACACCTTTATCTAA+AGG	-	chr7_3:82580812-82580831	Msa1130420:intron	30.0%
AATATTCTTGTTCAGATTCC+AGG	-	chr7_3:82581037-82581056	Msa1130420:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	82580099	82588920	82580099	ID=Msa1130420;Name=Msa1130420
chr7_3	mRNA	82580099	82588920	82580099	ID=Msa1130420-mRNA-1;Parent=Msa1130420;Name=Msa1130420-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0\|0.82\|0.79\|1\|0.78\|0.75\|24\|265\|911
chr7_3	exon	82580099	82580454	82580099	ID=Msa1130420-mRNA-1:exon:24398;Parent=Msa1130420-mRNA-1
chr7_3	exon	82580589	82580689	82580589	ID=Msa1130420-mRNA-1:exon:24397;Parent=Msa1130420-mRNA-1
chr7_3	exon	82580845	82580919	82580845	ID=Msa1130420-mRNA-1:exon:24396;Parent=Msa1130420-mRNA-1
chr7_3	exon	82582589	82582675	82582589	ID=Msa1130420-mRNA-1:exon:24395;Parent=Msa1130420-mRNA-1
chr7_3	exon	82582781	82582870	82582781	ID=Msa1130420-mRNA-1:exon:24394;Parent=Msa1130420-mRNA-1
chr7_3	exon	82583034	82583081	82583034	ID=Msa1130420-mRNA-1:exon:24393;Parent=Msa1130420-mRNA-1
chr7_3	exon	82583181	82583264	82583181	ID=Msa1130420-mRNA-1:exon:24392;Parent=Msa1130420-mRNA-1
chr7_3	exon	82583442	82583655	82583442	ID=Msa1130420-mRNA-1:exon:24391;Parent=Msa1130420-mRNA-1
chr7_3	exon	82583743	82583807	82583743	ID=Msa1130420-mRNA-1:exon:24390;Parent=Msa1130420-mRNA-1
chr7_3	exon	82584449	82584580	82584449	ID=Msa1130420-mRNA-1:exon:24389;Parent=Msa1130420-mRNA-1
chr7_3	exon	82585104	82585221	82585104	ID=Msa1130420-mRNA-1:exon:24388;Parent=Msa1130420-mRNA-1
chr7_3	exon	82585370	82585469	82585370	ID=Msa1130420-mRNA-1:exon:24387;Parent=Msa1130420-mRNA-1
chr7_3	exon	82585623	82585695	82585623	ID=Msa1130420-mRNA-1:exon:24386;Parent=Msa1130420-mRNA-1
chr7_3	exon	82585917	82586052	82585917	ID=Msa1130420-mRNA-1:exon:24385;Parent=Msa1130420-mRNA-1
chr7_3	exon	82586438	82586530	82586438	ID=Msa1130420-mRNA-1:exon:24384;Parent=Msa1130420-mRNA-1
chr7_3	exon	82586636	82586727	82586636	ID=Msa1130420-mRNA-1:exon:24383;Parent=Msa1130420-mRNA-1
chr7_3	exon	82586841	82586909	82586841	ID=Msa1130420-mRNA-1:exon:24382;Parent=Msa1130420-mRNA-1
chr7_3	exon	82587011	82587079	82587011	ID=Msa1130420-mRNA-1:exon:24381;Parent=Msa1130420-mRNA-1
chr7_3	exon	82587178	82587285	82587178	ID=Msa1130420-mRNA-1:exon:24380;Parent=Msa1130420-mRNA-1
chr7_3	exon	82587799	82587967	82587799	ID=Msa1130420-mRNA-1:exon:24379;Parent=Msa1130420-mRNA-1
chr7_3	exon	82588058	82588113	82588058	ID=Msa1130420-mRNA-1:exon:24378;Parent=Msa1130420-mRNA-1
chr7_3	exon	82588219	82588451	82588219	ID=Msa1130420-mRNA-1:exon:24377;Parent=Msa1130420-mRNA-1
chr7_3	exon	82588470	82588671	82588470	ID=Msa1130420-mRNA-1:exon:24376;Parent=Msa1130420-mRNA-1
chr7_3	exon	82588690	82588920	82588690	ID=Msa1130420-mRNA-1:exon:24375;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82588690	82588920	82588690	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82588470	82588671	82588470	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82588219	82588451	82588219	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82588058	82588113	82588058	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82587799	82587967	82587799	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82587178	82587285	82587178	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82587011	82587079	82587011	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82586841	82586909	82586841	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82586636	82586727	82586636	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82586438	82586530	82586438	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82585917	82586052	82585917	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82585623	82585695	82585623	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82585370	82585469	82585370	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82585104	82585221	82585104	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82584449	82584580	82584449	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82583743	82583807	82583743	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82583442	82583655	82583442	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82583181	82583264	82583181	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82583034	82583081	82583034	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82582781	82582870	82582781	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82582589	82582675	82582589	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82580845	82580919	82580845	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82580589	82580689	82580589	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	CDS	82580364	82580454	82580364	ID=Msa1130420-mRNA-1:cds;Parent=Msa1130420-mRNA-1
chr7_3	three_prime_UTR	82580099	82580363	82580099	ID=Msa1130420-mRNA-1:three_prime_utr;Parent=Msa1130420-mRNA-1

Gene Sequence

>Msa1130420

ATGAAATCTGGAATTCAGAATCTGAAGCGATGTAGTAAGCTAGAAGAAGAATCTCCATCACAGATTCAGAAGAAGCCCAAACTCAATAACGCGTTTTACTCTGTCCGTGATGGCGAGATCCACTCCAATTCAGCTTCCACCGATTTGAATATTGTAGCTGAAAATGCACCTCCATTGTCGCGATCATCCAGAGGCCGCGTTAAAATGCTTCCATCCAAGTTCAAGGACTCTAAGAAGAAGAAGAGTCAACAAATCAAAAGATCTAAGCTCGGTTTTGAAGGTGAGAATAGTGACATTGGAATTAGATTTGTAAATAAGGGAAAGGAAAACAAATGCGATTTGAAAAAAGAGATTGATAATGGTTTTGATGAATTTGATTATGAGAAGCATGCTAAGTCGTTTAAGAGCATTAAAAAGACGGTTAAAGGGAGTCCGGAGAGTGAAAATGGTTTTGATGAAAAGGGTAAAAAGGGGAAAGATATTTTCAAACTAGTGGATTTTCATTTGGGTGATATAGTTTGGGCAAAATGTGGCAAGACTTTTCCGGCATGGCCTGCTGTCGTCATTGATCCTATTTTGCAAGCTCCCGAGTCTGTTCTTAGGCGCTGTGTTCCCGATGCAATTTGCGTTATGTTTTTCGGTTATTCAAAAAATGGAAAGCAAAGGGACTATGCGTGGGCGAAGCAGGGGATGGTATTCCCCTTCTTGGAATTCATGGATAGATTCCAGGGGCATACCCGATTGTACAAGACCAAAGAAAGTGACTTTCATAAGGCAATGCAGGAGGCAATGTTGGCAGATAATGGCATTCTGGATCCACATTATAGAGCTGAGCAAATTGTGGAGGGTGCAACTTCCTGTGCTGAACAGGAATATCACTGCCAAGGCCAGGATACAATATCTTGTTATGGCTGCGGTTTGACGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGCTGTGCTCCTCAGCATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATACTGTGGCATTTGCAAAAAGATTTGGCACCATTCTGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCCAGCAAACGTTTCAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATCGTAAATTATCCACATCACAAACATACAAATCAAAAATCAAATCAGTAGAAAACAACCAAAGACCTGTGTTGCCTGAAAATCTAGCGGTGGTGTGCAATGGCTTGAAAGGAATATACTTTCCAAAACTTCATTTAGTTTTGTGCAAGTGTAGCACGTGTGGGTCAAAAAAGCAGGCATTGGCTGAATGGGAACGGCATACAGGTTGTACAGCCAAAAAATGGAAACATAGTGTGAAAGTAGAAGGCACAATGCAACCACTAATAAAATGGATCACGGAACACAATCCCCAAGCTGGAATTTCCATGAAGTTAAGTCAGAAACAGGTGTTTTCCTTTTTGCAAGAAAAATATGAACCAGTTTATGCAAAATGGACAACAGAGAGATGTGCGGTTTGCAGATGGGTAGAAGATTGGGAAGATAACAAGATTATTATATGTAACAGATGCCAAGTTGCTGTTCACCAAGAGTGCTATGGTGCAAAGAATCTCCAAGATTTTACTTCCTGGGTTTGTAGAGTGTGTGAAACTCCTGATGTAGAAAGAGAGTGTTGCCTCTGTCCACCAACTGATGTTGAGTTGCTGTGGGTTCATGTAACATGTGCTTGGTTCCGGCCTGAAGTTGTTTTCCGAAACCATGAGGCAATGGAACCTGCCTCTGGAATCCTTAAGATTGCTCCTAGTTCCTTTTTGAAGTTGCGTTCTACAGTGAAGAAGGGGACTCAAATAACGCAGACGCTAATATATTGTGCAGTTCACAGGATCCCAAATCCAGATTCAGTAATGGTTGTGCATACCCCTCTGGGGGTATTCTCTCCAAGAACTTCACTTCAAAATCTCAAGGGACGCTTTAGAGGATCAAAGCTTATTTCATCAAATAACTTAGAACTCCTTGAACCTTCAACCTCTGAACATTATGAGGTTGAGCCACTATCTGCCGCCAAGTGTCGTGTTTACAAAAGGCCTCCCAATAAGAAGGATGATGCACCGATAATTCACTTGCTTGGGGGACCAAACCTTCATTCTTTAAGTGCAATAACTCAATTGAACAACAATACGGATGCCGGGGTGTTTTCTTCATTTAAGGAACGCCTTCACCATTTACAGAAAACGGAAAATTGTAGAGTCTGCCTTGGAAAATCAGCTATTCAAGGGTGGGGTCTCTTTGCTCGTAGAGATTTGCAAGAAGGGGACATGGTTGTTGAGTATCGTGGTGAACAGTTAAGGCGTAGTGTTGCTGATCTGAGGGAAGCAAAGTACCGGTTAGAAGGCAAAGATTGTTATCTGTTCAAGATTAGTGAGGAAGTGGTAATTGATGCAACTGATAAGGGCAATATTGCACGTCTAATAAATCATTCTTGCATGCCAAACTGCTTTGCAAGGATTATGTGCTTGGGAGATCAGGAGAGCAGGATTGTTCTTATTGCCAAGACCAATATTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATACAGATGAGCGAGATGAACTCAAGGTTCCCTGCCACTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG

Protein sequence

>Msa1130420

MKSGIQNLKRCSKLEEESPSQIQKKPKLNNAFYSVRDGEIHSNSASTDLNIVAENAPPLSRSSRGRVKMLPSKFKDSKKKKSQQIKRSKLGFEGENSDIGIRFVNKGKENKCDLKKEIDNGFDEFDYEKHAKSFKSIKKTVKGSPESENGFDEKGKKGKDIFKLVDFHLGDIVWAKCGKTFPAWPAVVIDPILQAPESVLRRCVPDAICVMFFGYSKNGKQRDYAWAKQGMVFPFLEFMDRFQGHTRLYKTKESDFHKAMQEAMLADNGILDPHYRAEQIVEGATSCAEQEYHCQGQDTISCYGCGLTLPCKTMKKIKDSSCAPQHYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKRFKDLENIDYYCPDCKGKSDRKLSTSQTYKSKIKSVENNQRPVLPENLAVVCNGLKGIYFPKLHLVLCKCSTCGSKKQALAEWERHTGCTAKKWKHSVKVEGTMQPLIKWITEHNPQAGISMKLSQKQVFSFLQEKYEPVYAKWTTERCAVCRWVEDWEDNKIIICNRCQVAVHQECYGAKNLQDFTSWVCRVCETPDVERECCLCPPTDVELLWVHVTCAWFRPEVVFRNHEAMEPASGILKIAPSSFLKLRSTVKKGTQITQTLIYCAVHRIPNPDSVMVVHTPLGVFSPRTSLQNLKGRFRGSKLISSNNLELLEPSTSEHYEVEPLSAAKCRVYKRPPNKKDDAPIIHLLGGPNLHSLSAITQLNNNTDAGVFSSFKERLHHLQKTENCRVCLGKSAIQGWGLFARRDLQEGDMVVEYRGEQLRRSVADLREAKYRLEGKDCYLFKISEEVVIDATDKGNIARLINHSCMPNCFARIMCLGDQESRIVLIAKTNISAGEELTYDYLFDTDERDELKVPCHCKAPNCRKFMN*