AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1215900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215900 MtrunA17_Chr1g0162721 51.297 347 109 9 1 327 1 307 2.00e-95 285
Msa1215900 MtrunA17_Chr4g0065261 82.558 86 15 0 14 99 4 89 2.65e-50 165
Msa1215900 MtrunA17_Chr4g0065261 62.857 140 39 2 189 328 50 176 1.59e-47 158
Msa1215900 MtrunA17_Chr2g0302481 40.851 235 88 6 95 327 3 188 3.95e-36 129
Msa1215900 MtrunA17_Chr8g0373571 40.909 88 49 2 237 321 252 339 1.77e-13 70.5
Msa1215900 MtrunA17_Chr2g0302501 36.667 150 46 6 1 149 20 121 3.86e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1215900 AT4G36730.2 38.750 80 48 1 243 321 220 299 2.21e-11 64.3
Msa1215900 AT4G36730.1 38.750 80 48 1 243 321 222 301 2.30e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTACAGGTTGTGAGTTTC+TGG 0.129427 8_1:+77342712 None:intergenic
CTCAGCTAGTAGAGATTTAT+TGG 0.150152 8_1:+77343048 None:intergenic
CCATCCTTTCTTTCCTTATT+AGG 0.181504 8_1:-77345167 Msa1215900:intron
GTTTCCTCAATTGGGTCATT+AGG 0.201635 8_1:-77345507 Msa1215900:five_prime_UTR
TCTCTTTGAAAGAGATATTC+TGG 0.219563 8_1:-77345259 Msa1215900:five_prime_UTR
TCCCCAGTTATTAATCTTAC+AGG 0.249858 8_1:+77342698 None:intergenic
GTAAATAATTGGTTGGAATC+TGG 0.251335 8_1:+77342734 None:intergenic
GAGAACAAGGATTTATCTTT+TGG 0.256634 8_1:-77341493 Msa1215900:CDS
AATTGTTATGTTTCCTCAAT+TGG 0.257703 8_1:-77345516 Msa1215900:five_prime_UTR
GTGAGTTTCTGGTAAATAAT+TGG 0.270018 8_1:+77342723 None:intergenic
TTTCCTCAATTGGGTCATTA+GGG 0.281779 8_1:-77345506 Msa1215900:five_prime_UTR
TCTATCTTAAAACTGTTGTT+TGG 0.287250 8_1:+77338501 None:intergenic
TAATTAATACTGACCTAATA+AGG 0.289293 8_1:+77345154 None:intergenic
CAAAGAAATTGTTGTAATAC+TGG 0.291279 8_1:+77342600 None:intergenic
ACTGGGGAATCAAGTGAATA+TGG 0.297191 8_1:-77342683 Msa1215900:CDS
GAGAACAAGGTTAAGGAAAA+AGG 0.303213 8_1:-77340072 Msa1215900:intron
TGCAGGTGGATGATTATAAT+AGG 0.311712 8_1:+77343328 None:intergenic
CGAAAAGTTAGTATATTCAT+AGG 0.338095 8_1:-77345396 Msa1215900:five_prime_UTR
CAACCTGTAAGATTAATAAC+TGG 0.342383 8_1:-77342701 Msa1215900:CDS
TGATGCTCAACTAAAATATA+TGG 0.343775 8_1:-77341210 Msa1215900:intron
CTATCTTAAAACTGTTGTTT+GGG 0.352965 8_1:+77338502 None:intergenic
TGCAATTGCTTTCTCAGAAA+TGG 0.357172 8_1:-77342783 Msa1215900:CDS
AACTTCGGTGGCTGTTCTTC+AGG 0.362018 8_1:-77345308 Msa1215900:five_prime_UTR
GGATGATTATAATAGGGATT+TGG 0.374399 8_1:+77343335 None:intergenic
CTGCTGCTTGACATTGTAAC+TGG 0.378764 8_1:-77338531 Msa1215900:exon
CTTGGCTGATTCAGAGTTTG+AGG 0.379924 8_1:-77341268 Msa1215900:CDS
CGCATAAAATATGCAAGGTC+CGG 0.383046 8_1:+77338388 None:intergenic
ATTGTTATGTTTCCTCAATT+GGG 0.386848 8_1:-77345515 Msa1215900:five_prime_UTR
TAAATAATTGGTTGGAATCT+GGG 0.388774 8_1:+77342735 None:intergenic
AAGTTATTCTGAGGCATGTC+TGG 0.390063 8_1:-77339065 Msa1215900:CDS
GAAGAGCTAATTAAGGAGTA+TGG 0.396074 8_1:-77338589 Msa1215900:CDS
CAGATATCTAAGATGAATGT+TGG 0.419613 8_1:-77341523 Msa1215900:CDS
AGATATCTAAGATGAATGTT+GGG 0.419993 8_1:-77341522 Msa1215900:CDS
TCAGTACATGTGGCAAAATC+AGG 0.421341 8_1:-77343225 Msa1215900:intron
AAGAGAAGCAGCGGAATTCA+TGG 0.423276 8_1:-77345231 Msa1215900:five_prime_UTR
GATTTATTGGAGAGCTTCAC+AGG 0.424141 8_1:+77343061 None:intergenic
GATATCTGCTTCTTACATAT+AGG 0.425971 8_1:+77341538 None:intergenic
TTATTTATTTAGGAAGCTAC+TGG 0.426347 8_1:-77343905 Msa1215900:intron
GGTGGTCGGGGTTTGAACCC+CGG 0.447960 8_1:-77338407 Msa1215900:three_prime_UTR
GGAACAGGAAGAGCTAATTA+AGG 0.452723 8_1:-77338596 Msa1215900:intron
CAGCTAAGAGAACAAGGTTA+AGG 0.453072 8_1:-77340079 Msa1215900:CDS
AAAGAAGAATCCGATCCATC+TGG 0.459016 8_1:-77343854 Msa1215900:CDS
ATGATTCGCAATAACAATGA+TGG 0.462924 8_1:+77345196 None:intergenic
GCAGGTGGATGATTATAATA+GGG 0.469270 8_1:+77343329 None:intergenic
CTGACCTAATAAGGAAAGAA+AGG 0.472099 8_1:+77345163 None:intergenic
TGAGCTTAGCTCAGTTGGTA+TGG 0.483493 8_1:+77338361 None:intergenic
CAATAACAATGATGGGAGTA+AGG 0.490440 8_1:+77345204 None:intergenic
AACAATGATGGGAGTAAGGT+TGG 0.495543 8_1:+77345208 None:intergenic
GTTTCTGGTAAATAATTGGT+TGG 0.499066 8_1:+77342727 None:intergenic
GCATAAAATATGCAAGGTCC+GGG 0.499470 8_1:+77338389 None:intergenic
CCTAATAAGGAAAGAAAGGA+TGG 0.499771 8_1:+77345167 None:intergenic
AATTGGCACCACTGCGAAAG+TGG 0.515372 8_1:-77345345 Msa1215900:five_prime_UTR
CTTTCTCAGAAATGGTAAGC+AGG 0.515920 8_1:-77342775 Msa1215900:CDS
CAGTGGTGCCAATTAAAACA+AGG 0.515998 8_1:+77345354 None:intergenic
CCTCATGAGCTTAGCTCAGT+TGG 0.516816 8_1:+77338356 None:intergenic
TGAGGTACCACAAAATAGTA+AGG 0.518570 8_1:+77343827 None:intergenic
AAACTCTGAATCAGCCAAGA+TGG 0.521783 8_1:+77341272 None:intergenic
TATAATCATCCACCTGCAGC+TGG 0.532701 8_1:-77343323 Msa1215900:CDS
CAGTTACAATGTCAAGCAGC+AGG 0.542255 8_1:+77338532 None:intergenic
AAACCCTAATGACCCAATTG+AGG 0.548077 8_1:+77345503 None:intergenic
AACCTGTAAGATTAATAACT+GGG 0.551341 8_1:-77342700 Msa1215900:CDS
GTTCTTCAGGACGACGGTGT+GGG 0.556748 8_1:-77345295 Msa1215900:five_prime_UTR
CAAGTTTCTCAAGCTTGATG+AGG 0.558785 8_1:-77343877 Msa1215900:exon
AAATAGTAAGGTCTTCCAGA+TGG 0.566947 8_1:+77343839 None:intergenic
GTTAAAATGATGAACCTCGA+TGG 0.568844 8_1:+77339021 None:intergenic
TTGAATCATCAGTATGCAGA+TGG 0.569444 8_1:-77343263 Msa1215900:CDS
TGATTCGCAATAACAATGAT+GGG 0.570483 8_1:+77345197 None:intergenic
GAAAAGTTAGTATATTCATA+GGG 0.572729 8_1:-77345395 Msa1215900:five_prime_UTR
TGTTCTTCAGGACGACGGTG+TGG 0.575745 8_1:-77345296 Msa1215900:five_prime_UTR
CTCATGTAAGAACCAGCTGC+AGG 0.577655 8_1:+77343311 None:intergenic
TGTTGGGGATGGTGAGAACA+AGG 0.580631 8_1:-77341506 Msa1215900:CDS
ATAGGGATTTGGAGTAAACT+CGG 0.582242 8_1:+77343346 None:intergenic
GAGGAGCTAGCTAGCAACTT+CGG 0.586338 8_1:-77345323 Msa1215900:five_prime_UTR
GTAAGGTCTTCCAGATGGAT+CGG 0.588408 8_1:+77343844 None:intergenic
GAAATCTAAGATGACTGTTG+AGG 0.593683 8_1:-77341458 Msa1215900:CDS
TAGGGATTTGGAGTAAACTC+GGG 0.602326 8_1:+77343347 None:intergenic
CATGATTCACTGACATCTTG+AGG 0.602539 8_1:+77343809 None:intergenic
CCAACTGAGCTAAGCTCATG+AGG 0.606528 8_1:-77338356 Msa1215900:three_prime_UTR
CAATAAATCTCTACTAGCTG+AGG 0.606627 8_1:-77343047 Msa1215900:intron
CTGGAAATTAAGAGAAGCAG+CGG 0.607828 8_1:-77345240 Msa1215900:five_prime_UTR
GGGAATCAGCTAAGAGAACA+AGG 0.611347 8_1:-77340085 Msa1215900:CDS
GAGTTTGAGGACAGTCGTCA+AGG 0.611746 8_1:-77341255 Msa1215900:CDS
GATATCTAAGATGAATGTTG+GGG 0.621950 8_1:-77341521 Msa1215900:CDS
GACAACGCATAAAATATGCA+AGG 0.627666 8_1:+77338383 None:intergenic
CTGAGCTAAGCTCATGAGGA+CGG 0.629312 8_1:-77338352 Msa1215900:three_prime_UTR
ACTTGAATCATCAGTACATG+TGG 0.630018 8_1:-77343235 Msa1215900:CDS
ATGTAAGAACCAGCTGCAGG+TGG 0.634873 8_1:+77343314 None:intergenic
GTGGCTGTTCTTCAGGACGA+CGG 0.649171 8_1:-77345301 Msa1215900:five_prime_UTR
TCTAAGATGACTGTTGAGGA+TGG 0.650064 8_1:-77341454 Msa1215900:intron
TGGCACCACTGCGAAAGTGG+AGG 0.657068 8_1:-77345342 Msa1215900:five_prime_UTR
TCTAAGATGAATGTTGGGGA+TGG 0.657589 8_1:-77341517 Msa1215900:CDS
CATAAAATATGCAAGGTCCG+GGG 0.663773 8_1:+77338390 None:intergenic
AGTGGTGCCAATTAAAACAA+GGG 0.667449 8_1:+77345355 None:intergenic
TAGCTCCTCCACTTTCGCAG+TGG 0.675400 8_1:+77345337 None:intergenic
ACCTGTAAGATTAATAACTG+GGG 0.682506 8_1:-77342699 Msa1215900:CDS
GAGCTAGCTAGCAACTTCGG+TGG 0.705585 8_1:-77345320 Msa1215900:five_prime_UTR
TCTTTCAAAGAGACAAAGTG+CGG 0.729169 8_1:+77345269 None:intergenic
TGATGAAAACGATTCCATCG+AGG 0.749293 8_1:-77339035 Msa1215900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATATTATAGTATC+TGG + chr8_1:77338788-77338807 None:intergenic 10.0%
!!! CTAATTTTTAAAAGAAATAA+CGG + chr8_1:77339125-77339144 None:intergenic 10.0%
!!! TTTTAAAAATTAGTATCAAT+TGG - chr8_1:77339132-77339151 Msa1215900:CDS 10.0%
!! TTAAAAGCTATTATTTATTT+AGG - chr8_1:77339841-77339860 Msa1215900:intron 10.0%
!!! ACTCATTTTAAATTTTAATT+AGG - chr8_1:77340375-77340394 Msa1215900:intron 10.0%
!! TATTATAACTAACAAAATTA+TGG + chr8_1:77343327-77343346 None:intergenic 10.0%
!! CTAAAAGATATATTAAAAAA+TGG + chr8_1:77343860-77343879 None:intergenic 10.0%
!! ATTTAAAGAAAATTAGAATA+AGG + chr8_1:77343908-77343927 None:intergenic 10.0%
!! TATAAAATTGAAAAAATAAG+GGG + chr8_1:77344762-77344781 None:intergenic 10.0%
!! GATATAAAATTGAAAAAATA+AGG + chr8_1:77344764-77344783 None:intergenic 10.0%
!!! TCTATCATTTTTTATTTATT+TGG - chr8_1:77345301-77345320 Msa1215900:five_prime_UTR 10.0%
!!! CTATCATTTTTTATTTATTT+GGG - chr8_1:77345302-77345321 Msa1215900:five_prime_UTR 10.0%
!! CTACATTAATAAAGAAAATT+TGG + chr8_1:77338708-77338727 None:intergenic 15.0%
!!! CAAATTTTCTTTATTAATGT+AGG - chr8_1:77338706-77338725 Msa1215900:intron 15.0%
!! CTATAATATTATTATATCAC+TGG - chr8_1:77338792-77338811 Msa1215900:intron 15.0%
!!! ATTTTACAATTGTGTTTTAA+CGG - chr8_1:77339212-77339231 Msa1215900:intron 15.0%
!! AAAAATTAAATAGACATACT+CGG + chr8_1:77339261-77339280 None:intergenic 15.0%
!!! TTTTATTGTTTTCCAATATT+AGG - chr8_1:77339277-77339296 Msa1215900:intron 15.0%
!!! TTTATTGTTTTCCAATATTA+GGG - chr8_1:77339278-77339297 Msa1215900:intron 15.0%
!!! AGATTGCTTTTTTTTTATTT+AGG - chr8_1:77339627-77339646 Msa1215900:intron 15.0%
!! TTTATCAATTACTCAAATAA+TGG + chr8_1:77339709-77339728 None:intergenic 15.0%
!! ATATATTCATTGAAATATCT+AGG + chr8_1:77340739-77340758 None:intergenic 15.0%
!!! TTTTCTAATCATAATTTCTA+TGG - chr8_1:77340782-77340801 Msa1215900:intron 15.0%
!! TTTCTAATCATAATTTCTAT+GGG - chr8_1:77340783-77340802 Msa1215900:intron 15.0%
!!! AATCATTAATTTTTCATTGA+TGG - chr8_1:77341453-77341472 Msa1215900:intron 15.0%
!!! ATTAAATGCTAATTTAAGAT+GGG + chr8_1:77342726-77342745 None:intergenic 15.0%
!! AATTAAATGCTAATTTAAGA+TGG + chr8_1:77342727-77342746 None:intergenic 15.0%
!!! TTAGATATTCTTAATTTTGT+TGG - chr8_1:77343260-77343279 Msa1215900:CDS 15.0%
!!! ACTTGAAAAAAAAAACTTTT+GGG + chr8_1:77343885-77343904 None:intergenic 15.0%
!! AATGAAATAAACTAAAAACT+AGG - chr8_1:77344886-77344905 Msa1215900:intron 15.0%
!! GAAAAGTTAGTATATTCATA+GGG - chr8_1:77338361-77338380 Msa1215900:three_prime_UTR 20.0%
!!! TATTTAACCCTTGTTTTAAT+TGG - chr8_1:77338394-77338413 Msa1215900:three_prime_UTR 20.0%
!! TAATTAATACTGACCTAATA+AGG + chr8_1:77338605-77338624 None:intergenic 20.0%
!!! GTTTTTTAGAAAAAATGGAA+AGG + chr8_1:77338682-77338701 None:intergenic 20.0%
!!! GGATTGTTTTTTAGAAAAAA+TGG + chr8_1:77338687-77338706 None:intergenic 20.0%
!!! CAAAAATAGGTGAAATATTT+TGG + chr8_1:77338831-77338850 None:intergenic 20.0%
!! AAAAAATCAAAGCAAATAGT+AGG + chr8_1:77339061-77339080 None:intergenic 20.0%
!!! TATGGTATTTTTTTAGTTGA+TGG - chr8_1:77339163-77339182 Msa1215900:intron 20.0%
!!! TTATTGTTTTCCAATATTAG+GGG - chr8_1:77339279-77339298 Msa1215900:intron 20.0%
!! TAACAACATTAATAGTGATA+CGG + chr8_1:77339504-77339523 None:intergenic 20.0%
!!! TTTTCACATTCTTTGTTTTT+CGG - chr8_1:77340628-77340647 Msa1215900:intron 20.0%
!! AGGAAATTTCATATTTCTTT+AGG - chr8_1:77340817-77340836 Msa1215900:intron 20.0%
!! AAACTTATACACAATTCATT+AGG + chr8_1:77340911-77340930 None:intergenic 20.0%
!!! ATACCAATATTTATGCATTT+TGG - chr8_1:77340941-77340960 Msa1215900:intron 20.0%
!! TGCTAAAATGACATATAATT+TGG - chr8_1:77341509-77341528 Msa1215900:CDS 20.0%
!! GCTAAAATGACATATAATTT+GGG - chr8_1:77341510-77341529 Msa1215900:CDS 20.0%
!! ATTCATTGTTAAAATGTAGT+AGG - chr8_1:77341751-77341770 Msa1215900:intron 20.0%
!! TCTTAGATATTGGAATTAAT+GGG - chr8_1:77342034-77342053 Msa1215900:intron 20.0%
!! ATCAATTTATTCTTCATTAC+AGG - chr8_1:77342135-77342154 Msa1215900:intron 20.0%
!!! GTTTGAAAAGGTTTTATTTA+TGG - chr8_1:77342600-77342619 Msa1215900:CDS 20.0%
!!! GTATCTAAGATATATAAAGT+AGG + chr8_1:77342827-77342846 None:intergenic 20.0%
!! TAATAAGTGCTTAAAATGTT+TGG + chr8_1:77343109-77343128 None:intergenic 20.0%
!!! AAACATTTTAAGCACTTATT+AGG - chr8_1:77343108-77343127 Msa1215900:intron 20.0%
!! AAATTATGGCTAGAATTATA+GGG + chr8_1:77343313-77343332 None:intergenic 20.0%
!! AAAATTATGGCTAGAATTAT+AGG + chr8_1:77343314-77343333 None:intergenic 20.0%
!! ATGAAAGGTTTATAAATGAT+AGG + chr8_1:77343449-77343468 None:intergenic 20.0%
!! AAGATTAATTCTTAACTATC+TGG - chr8_1:77343561-77343580 Msa1215900:intron 20.0%
!!! CTTGAAAAAAAAAACTTTTG+GGG + chr8_1:77343884-77343903 None:intergenic 20.0%
!!! GACTTGAAAAAAAAAACTTT+TGG + chr8_1:77343886-77343905 None:intergenic 20.0%
!! TGATTATGATTATACATGTT+AGG - chr8_1:77344311-77344330 Msa1215900:intron 20.0%
!! GATTATGATTATACATGTTA+GGG - chr8_1:77344312-77344331 Msa1215900:intron 20.0%
!! TATGATTGTTGTATATTCAT+CGG - chr8_1:77344398-77344417 Msa1215900:intron 20.0%
!!! AACTTTTTAGTTGTTTTGTT+AGG + chr8_1:77344676-77344695 None:intergenic 20.0%
!! AAAAAGAAATGAAAACAGTT+AGG - chr8_1:77344927-77344946 Msa1215900:intron 20.0%
! CGAAAAGTTAGTATATTCAT+AGG - chr8_1:77338360-77338379 Msa1215900:three_prime_UTR 25.0%
!! ACAAGGGTTAAATATGTTTT+TGG + chr8_1:77338388-77338407 None:intergenic 25.0%
! AGTATCTGGATGAATAAATT+TGG + chr8_1:77338774-77338793 None:intergenic 25.0%
!!! AAATATTTTGGTCCAAAATC+TGG + chr8_1:77338819-77338838 None:intergenic 25.0%
! AAATTAGTATCAATTGGAGT+AGG - chr8_1:77339138-77339157 Msa1215900:CDS 25.0%
!! TGATGTTTTGTACATTATCT+TGG - chr8_1:77339809-77339828 Msa1215900:intron 25.0%
! TTATTTATTTAGGAAGCTAC+TGG - chr8_1:77339851-77339870 Msa1215900:intron 25.0%
!!! AAAATGTTTTAAACCTGCAT+AGG + chr8_1:77340098-77340117 None:intergenic 25.0%
! GGTAATGATGTACATATTTA+TGG - chr8_1:77340552-77340571 Msa1215900:intron 25.0%
! ATTTCATATTTCTTTAGGTG+CGG - chr8_1:77340822-77340841 Msa1215900:intron 25.0%
! TGACCAAAATGCATAAATAT+TGG + chr8_1:77340947-77340966 None:intergenic 25.0%
!!! AATATTTATGCATTTTGGTC+AGG - chr8_1:77340946-77340965 Msa1215900:intron 25.0%
! TAAATAATTGGTTGGAATCT+GGG + chr8_1:77341024-77341043 None:intergenic 25.0%
! AACCTGTAAGATTAATAACT+GGG - chr8_1:77341056-77341075 Msa1215900:intron 25.0%
! CAAAGAAATTGTTGTAATAC+TGG + chr8_1:77341159-77341178 None:intergenic 25.0%
!! ATTTTCGTGAAATTGTCAAA+GGG + chr8_1:77341289-77341308 None:intergenic 25.0%
!! AATTTTCGTGAAATTGTCAA+AGG + chr8_1:77341290-77341309 None:intergenic 25.0%
! GAAGTGTAATTAATGTTGTA+TGG - chr8_1:77341312-77341331 Msa1215900:intron 25.0%
! ATAGAGAAATAAACAGCTAA+TGG - chr8_1:77341416-77341435 Msa1215900:intron 25.0%
! TGGTGTAAAATGACATAATT+TGG - chr8_1:77341473-77341492 Msa1215900:CDS 25.0%
! GGTGTAAAATGACATAATTT+GGG - chr8_1:77341474-77341493 Msa1215900:CDS 25.0%
!! GGAGTACTATTAAATGTTAT+AGG - chr8_1:77341538-77341557 Msa1215900:CDS 25.0%
!! TTTTTGTAGCATGTTTGAAA+AGG - chr8_1:77341561-77341580 Msa1215900:intron 25.0%
!!! GTTTGAAAAGGTTTTATTTG+TGG - chr8_1:77341573-77341592 Msa1215900:intron 25.0%
! TATGTATCGAAGATACATAA+AGG + chr8_1:77341819-77341838 None:intergenic 25.0%
! GATACATATTTAAATCCCTT+AGG - chr8_1:77341831-77341850 Msa1215900:intron 25.0%
!! TTTTCTACGGCAATTATAAA+TGG + chr8_1:77341876-77341895 None:intergenic 25.0%
!!! AACCCTTGTAATTTTTTCTA+CGG + chr8_1:77341889-77341908 None:intergenic 25.0%
! CTCTTAGATATTGGAATTAA+TGG - chr8_1:77342033-77342052 Msa1215900:intron 25.0%
! AAGAAATGGGTAGTTTATTA+AGG - chr8_1:77342101-77342120 Msa1215900:intron 25.0%
!! AGATATCTAAGATGAATGTT+GGG - chr8_1:77342234-77342253 Msa1215900:intron 25.0%
! TAAAATTTGAATGCTCAGAA+AGG - chr8_1:77342382-77342401 Msa1215900:intron 25.0%
! TGATGCTCAACTAAAATATA+TGG - chr8_1:77342546-77342565 Msa1215900:intron 25.0%
!! TTTTCATAGCATGTTTGAAA+AGG - chr8_1:77342588-77342607 Msa1215900:CDS 25.0%
! TCAAAAAAGTAAGTTTGCAT+GGG + chr8_1:77342668-77342687 None:intergenic 25.0%
! TTCAAAAAAGTAAGTTTGCA+TGG + chr8_1:77342669-77342688 None:intergenic 25.0%
! ATTCACTGTTGAAATATAGT+AGG - chr8_1:77342762-77342781 Msa1215900:CDS 25.0%
!! ATGTCATCTTTTCTTTCTTT+AGG + chr8_1:77341784-77341803 None:intergenic 25.0%
! ATGAGACAATGTATCTTTAA+GGG + chr8_1:77342860-77342879 None:intergenic 25.0%
! TATGAGACAATGTATCTTTA+AGG + chr8_1:77342861-77342880 None:intergenic 25.0%
!!! ACTATTGAGCTTTAAATTGT+TGG - chr8_1:77343218-77343237 Msa1215900:intron 25.0%
! ATATCTAACAAGATTTGAGA+TGG + chr8_1:77343248-77343267 None:intergenic 25.0%
!! AGTTATAATATGTTTTCGTG+TGG - chr8_1:77343337-77343356 Msa1215900:CDS 25.0%
! TAGAATGTTGGATTGTAAAA+TGG + chr8_1:77343486-77343505 None:intergenic 25.0%
! AAAGAAAAAGACAATCAAAC+AGG - chr8_1:77343650-77343669 Msa1215900:intron 25.0%
! AAGAAAAAGACAATCAAACA+GGG - chr8_1:77343651-77343670 Msa1215900:intron 25.0%
!! CAATATTTTCTGCAATTATG+AGG + chr8_1:77343770-77343789 None:intergenic 25.0%
! AATATCTATGATTTCGACAA+TGG - chr8_1:77343791-77343810 Msa1215900:intron 25.0%
! AAAACTGTAAAAAAAAGTCG+TGG - chr8_1:77343826-77343845 Msa1215900:CDS 25.0%
! AAACTGTAAAAAAAAGTCGT+GGG - chr8_1:77343827-77343846 Msa1215900:CDS 25.0%
!! CAATTAGTTTAGTCAAAGAT+AGG - chr8_1:77343979-77343998 Msa1215900:intron 25.0%
!!! AAGAAACAATGTTTTTAGCT+TGG - chr8_1:77344091-77344110 Msa1215900:intron 25.0%
! GTTTCCTTATTATGAACTTA+TGG - chr8_1:77344241-77344260 Msa1215900:intron 25.0%
! ACAATCATGTTCCAAATAAA+GGG + chr8_1:77344286-77344305 None:intergenic 25.0%
! TACAATCATGTTCCAAATAA+AGG + chr8_1:77344287-77344306 None:intergenic 25.0%
!! TTTATTTGGAACATGATTGT+AGG - chr8_1:77344286-77344305 Msa1215900:intron 25.0%
! AAAGATACTAATTGGCAATT+TGG + chr8_1:77344435-77344454 None:intergenic 25.0%
! TGGTAATCAAAGATACTAAT+TGG + chr8_1:77344443-77344462 None:intergenic 25.0%
!!! AAGTTTTATATGTTTCCATG+AGG + chr8_1:77344540-77344559 None:intergenic 25.0%
! ACAACTAAAAAGTTATTCTG+AGG - chr8_1:77344682-77344701 Msa1215900:intron 25.0%
!! ATTCAACTAAAGTACTTGTT+TGG - chr8_1:77344788-77344807 Msa1215900:intron 25.0%
!! TTATTCAAAGCTTTTGATGT+TGG - chr8_1:77345047-77345066 Msa1215900:intron 25.0%
!! CTATCTTAAAACTGTTGTTT+GGG + chr8_1:77345257-77345276 None:intergenic 25.0%
! TCTATCTTAAAACTGTTGTT+TGG + chr8_1:77345258-77345277 None:intergenic 25.0%
!!! CATTTTTTATTTATTTGGGC+TGG - chr8_1:77345306-77345325 Msa1215900:five_prime_UTR 25.0%
! TCTCTTTGAAAGAGATATTC+TGG - chr8_1:77338497-77338516 Msa1215900:three_prime_UTR 30.0%
TGATTCGCAATAACAATGAT+GGG + chr8_1:77338562-77338581 None:intergenic 30.0%
ATGATTCGCAATAACAATGA+TGG + chr8_1:77338563-77338582 None:intergenic 30.0%
CTGGATGAATAAATTTGGAT+TGG + chr8_1:77338769-77338788 None:intergenic 30.0%
!!! GGTATTTTTTTAGTTGATGG+TGG - chr8_1:77339166-77339185 Msa1215900:intron 30.0%
AGATATTAATGGAGAGAAAG+TGG + chr8_1:77339396-77339415 None:intergenic 30.0%
!! AATGAGAATTAAGTTGAGAG+AGG + chr8_1:77339468-77339487 None:intergenic 30.0%
TAATAGTGATACGGAAAAGA+TGG + chr8_1:77339495-77339514 None:intergenic 30.0%
TATAGCATAGCAGAATTTAG+CGG - chr8_1:77339533-77339552 Msa1215900:intron 30.0%
CTCTATTCAATCACATATTG+TGG + chr8_1:77339605-77339624 None:intergenic 30.0%
! GTTCAAACTTTGAAGAAAGA+AGG + chr8_1:77339669-77339688 None:intergenic 30.0%
TACTCAAATAATGGCTTATC+AGG + chr8_1:77339700-77339719 None:intergenic 30.0%
TGCTTTGTATCAATTTGTGA+TGG - chr8_1:77340119-77340138 Msa1215900:CDS 30.0%
TCACAAAGCAATCATATGTA+TGG + chr8_1:77340250-77340269 None:intergenic 30.0%
! ATGATTGCTTTGTGATTTGT+TGG - chr8_1:77340255-77340274 Msa1215900:intron 30.0%
GGATGATTATAATAGGGATT+TGG + chr8_1:77340424-77340443 None:intergenic 30.0%
AAAGAATGTGAAAATGAAGC+AGG + chr8_1:77340622-77340641 None:intergenic 30.0%
TTCTATGGGTATACATTTAG+AGG - chr8_1:77340797-77340816 Msa1215900:intron 30.0%
TTTCATATTTCTTTAGGTGC+GGG - chr8_1:77340823-77340842 Msa1215900:intron 30.0%
GTAAATAATTGGTTGGAATC+TGG + chr8_1:77341025-77341044 None:intergenic 30.0%
!! GTTTCTGGTAAATAATTGGT+TGG + chr8_1:77341032-77341051 None:intergenic 30.0%
!! GTGAGTTTCTGGTAAATAAT+TGG + chr8_1:77341036-77341055 None:intergenic 30.0%
CAACCTGTAAGATTAATAAC+TGG - chr8_1:77341055-77341074 Msa1215900:intron 30.0%
ACCTGTAAGATTAATAACTG+GGG - chr8_1:77341057-77341076 Msa1215900:intron 30.0%
GTCAAAGGGACATATAATTT+GGG + chr8_1:77341275-77341294 None:intergenic 30.0%
TGTCAAAGGGACATATAATT+TGG + chr8_1:77341276-77341295 None:intergenic 30.0%
TTGCCGTAGAAAAAATTACA+AGG - chr8_1:77341883-77341902 Msa1215900:intron 30.0%
TGCCGTAGAAAAAATTACAA+GGG - chr8_1:77341884-77341903 Msa1215900:intron 30.0%
TAACTCAACCTCATAAGAAA+TGG - chr8_1:77342087-77342106 Msa1215900:intron 30.0%
AACTCAACCTCATAAGAAAT+GGG - chr8_1:77342088-77342107 Msa1215900:intron 30.0%
TAAACTACCCATTTCTTATG+AGG + chr8_1:77342098-77342117 None:intergenic 30.0%
! GGTCTTATGCTTAAAATCTT+TGG - chr8_1:77342156-77342175 Msa1215900:intron 30.0%
! GTCTAATTTTATCCTTTCTG+TGG - chr8_1:77342186-77342205 Msa1215900:intron 30.0%
GATATCTGCTTCTTACATAT+AGG + chr8_1:77342221-77342240 None:intergenic 30.0%
! CAGATATCTAAGATGAATGT+TGG - chr8_1:77342233-77342252 Msa1215900:intron 30.0%
! GATATCTAAGATGAATGTTG+GGG - chr8_1:77342235-77342254 Msa1215900:intron 30.0%
! GAGAACAAGGATTTATCTTT+TGG - chr8_1:77342263-77342282 Msa1215900:intron 30.0%
! ACAAGGATTTATCTTTTGGT+TGG - chr8_1:77342267-77342286 Msa1215900:intron 30.0%
! GAGAGTAAGGATTTATCTTT+TGG - chr8_1:77342326-77342345 Msa1215900:intron 30.0%
ATGAACTGCAATACAAGTTT+CGG + chr8_1:77342417-77342436 None:intergenic 30.0%
TCTTTGTAGAAAAACCATCT+TGG - chr8_1:77342470-77342489 Msa1215900:intron 30.0%
TATGGTACTGTAGAATGTTA+TGG - chr8_1:77342564-77342583 Msa1215900:intron 30.0%
ATGGTACTGTAGAATGTTAT+GGG - chr8_1:77342565-77342584 Msa1215900:intron 30.0%
TCAAGTTATGTTCTAACACA+AGG + chr8_1:77343186-77343205 None:intergenic 30.0%
AATGTTGGATTGTAAAATGG+TGG + chr8_1:77343483-77343502 None:intergenic 30.0%
GAATTAATCTTAGCAACCTT+AGG + chr8_1:77343552-77343571 None:intergenic 30.0%
GAAAAGAAATGCAGCTAAAT+AGG + chr8_1:77343604-77343623 None:intergenic 30.0%
CATATCTTAGTTTCCTTCAT+TGG - chr8_1:77344157-77344176 Msa1215900:intron 30.0%
AGCACCATAAGTTCATAATA+AGG + chr8_1:77344248-77344267 None:intergenic 30.0%
CAACAAACTTTCCCTTTATT+TGG - chr8_1:77344272-77344291 Msa1215900:intron 30.0%
AGTATCTTTGATTACCAATG+TGG - chr8_1:77344446-77344465 Msa1215900:intron 30.0%
AAAATTTGCAACTACCACAT+TGG + chr8_1:77344463-77344482 None:intergenic 30.0%
AAGAGATGTAAACAAAGTCA+AGG + chr8_1:77344499-77344518 None:intergenic 30.0%
ATGAAAACAGTTAGGATGTT+AGG - chr8_1:77344935-77344954 Msa1215900:intron 30.0%
! TAATTCTGAGTGTTGTATTG+TGG - chr8_1:77345083-77345102 Msa1215900:intron 30.0%
TTTCCTCAATTGGGTCATTA+GGG - chr8_1:77338250-77338269 Msa1215900:three_prime_UTR 35.0%
! AGTGGTGCCAATTAAAACAA+GGG + chr8_1:77338404-77338423 None:intergenic 35.0%
TCTTTCAAAGAGACAAAGTG+CGG + chr8_1:77338490-77338509 None:intergenic 35.0%
! CAATAACAATGATGGGAGTA+AGG + chr8_1:77338555-77338574 None:intergenic 35.0%
CCTAATAAGGAAAGAAAGGA+TGG + chr8_1:77338592-77338611 None:intergenic 35.0%
CCATCCTTTCTTTCCTTATT+AGG - chr8_1:77338589-77338608 Msa1215900:CDS 35.0%
CTGACCTAATAAGGAAAGAA+AGG + chr8_1:77338596-77338615 None:intergenic 35.0%
! TATATCACTGGACCAGATTT+TGG - chr8_1:77338804-77338823 Msa1215900:intron 35.0%
ACGAAAGTCAAAGTACGAAA+CGG + chr8_1:77338977-77338996 None:intergenic 35.0%
ACTTTCACTACTTCTACTTC+TGG - chr8_1:77339004-77339023 Msa1215900:intron 35.0%
AGAAATAACGGTACACAGAA+GGG + chr8_1:77339113-77339132 None:intergenic 35.0%
AAGAAATAACGGTACACAGA+AGG + chr8_1:77339114-77339133 None:intergenic 35.0%
TATCAATTGGAGTAGGCTTA+TGG - chr8_1:77339145-77339164 Msa1215900:intron 35.0%
CTAGACTAATCCCCTAATAT+TGG + chr8_1:77339292-77339311 None:intergenic 35.0%
AAGAGAGGGGAAGATATTAA+TGG + chr8_1:77339407-77339426 None:intergenic 35.0%
! GATGGAAAATAACCCTTTTC+TGG + chr8_1:77339446-77339465 None:intergenic 35.0%
!! AGAATTAAGTTGAGAGAGGA+TGG + chr8_1:77339464-77339483 None:intergenic 35.0%
AATGGCTTATCAGGTTTGAT+AGG + chr8_1:77339691-77339710 None:intergenic 35.0%
AAATAGTAAGGTCTTCCAGA+TGG + chr8_1:77339920-77339939 None:intergenic 35.0%
! TGGAAGACCTTACTATTTTG+TGG - chr8_1:77339922-77339941 Msa1215900:intron 35.0%
! TGAGGTACCACAAAATAGTA+AGG + chr8_1:77339932-77339951 None:intergenic 35.0%
GATGTCAGTGAATCATGTTA+TGG - chr8_1:77339953-77339972 Msa1215900:intron 35.0%
! ATAGGGATTTGGAGTAAACT+CGG + chr8_1:77340413-77340432 None:intergenic 35.0%
GCAGGTGGATGATTATAATA+GGG + chr8_1:77340430-77340449 None:intergenic 35.0%
TGCAGGTGGATGATTATAAT+AGG + chr8_1:77340431-77340450 None:intergenic 35.0%
TTGAATCATCAGTATGCAGA+TGG - chr8_1:77340493-77340512 Msa1215900:intron 35.0%
ACTTGAATCATCAGTACATG+TGG - chr8_1:77340521-77340540 Msa1215900:intron 35.0%
! ATAGTTGCTTTCTTAGACCA+TGG - chr8_1:77340583-77340602 Msa1215900:intron 35.0%
CTCAGCTAGTAGAGATTTAT+TGG + chr8_1:77340711-77340730 None:intergenic 35.0%
CAATAAATCTCTACTAGCTG+AGG - chr8_1:77340709-77340728 Msa1215900:intron 35.0%
TTCATATTTCTTTAGGTGCG+GGG - chr8_1:77340824-77340843 Msa1215900:intron 35.0%
TGCAATTGCTTTCTCAGAAA+TGG - chr8_1:77340973-77340992 Msa1215900:intron 35.0%
TCCCCAGTTATTAATCTTAC+AGG + chr8_1:77341061-77341080 None:intergenic 35.0%
!!! AACATCAATTTTTGGTGCTG+AGG + chr8_1:77341107-77341126 None:intergenic 35.0%
TCAGCACCAAAAATTGATGT+TGG - chr8_1:77341106-77341125 Msa1215900:intron 35.0%
! GCATCTCCAACATCAATTTT+TGG + chr8_1:77341115-77341134 None:intergenic 35.0%
TGACGCTCGACTAAATAATA+TGG - chr8_1:77341237-77341256 Msa1215900:CDS 35.0%
! ATGACATATAATTTGGGACG+AGG - chr8_1:77341516-77341535 Msa1215900:CDS 35.0%
! TGACATATAATTTGGGACGA+GGG - chr8_1:77341517-77341536 Msa1215900:CDS 35.0%
GTATCGAAGATACATAAAGG+AGG + chr8_1:77341816-77341835 None:intergenic 35.0%
TGTAGAGACAATGTACCTAA+GGG + chr8_1:77341849-77341868 None:intergenic 35.0%
ATGTAGAGACAATGTACCTA+AGG + chr8_1:77341850-77341869 None:intergenic 35.0%
TAGGTACATTGTCTCTACAT+AGG - chr8_1:77341850-77341869 Msa1215900:intron 35.0%
! TAAAGTGAGAGTATGTGCTA+AGG + chr8_1:77341956-77341975 None:intergenic 35.0%
GCATAGGTTCTCTTAGATAT+TGG - chr8_1:77342024-77342043 Msa1215900:intron 35.0%
! AATTTTATCCTTTCTGTGGC+AGG - chr8_1:77342190-77342209 Msa1215900:intron 35.0%
!! GGATTTATCTTTTGGTTGGA+AGG - chr8_1:77342271-77342290 Msa1215900:intron 35.0%
! GAAATCTAAGATGACTGTTG+AGG - chr8_1:77342298-77342317 Msa1215900:intron 35.0%
! GGACTTGAGTCTTTTCAAAT+AGG - chr8_1:77343151-77343170 Msa1215900:intron 35.0%
CTAGGTAGATGGTGAAATTA+TGG + chr8_1:77343289-77343308 None:intergenic 35.0%
AATTATAGGGTCTAGGTAGA+TGG + chr8_1:77343300-77343319 None:intergenic 35.0%
GTGGTAGCATTTCATATGAA+AGG + chr8_1:77343464-77343483 None:intergenic 35.0%
GACATATCTAGCTAGAATGT+TGG + chr8_1:77343498-77343517 None:intergenic 35.0%
AGAAAGTAAATCCCTTCCTA+AGG - chr8_1:77343533-77343552 Msa1215900:intron 35.0%
AATCTTAGCAACCTTAGGAA+GGG + chr8_1:77343547-77343566 None:intergenic 35.0%
TAATCTTAGCAACCTTAGGA+AGG + chr8_1:77343548-77343567 None:intergenic 35.0%
! TTAGCTGCATTTCTTTTCTC+AGG - chr8_1:77343606-77343625 Msa1215900:intron 35.0%
GAGAACAAGGTTAAGGAAAA+AGG - chr8_1:77343684-77343703 Msa1215900:intron 35.0%
! AAAAGGTACATACTAGACCA+TGG - chr8_1:77343701-77343720 Msa1215900:intron 35.0%
CACTTTAGACGGATAAAGAT+AGG - chr8_1:77344029-77344048 Msa1215900:intron 35.0%
TGTCTTCTGATCAACTTATC+TGG + chr8_1:77344134-77344153 None:intergenic 35.0%
ATGAAACTGATCACCAATGA+AGG + chr8_1:77344173-77344192 None:intergenic 35.0%
AGTTTGTCATAGTTTCCTCA+TGG - chr8_1:77344522-77344541 Msa1215900:intron 35.0%
GTTAAAATGATGAACCTCGA+TGG + chr8_1:77344738-77344757 None:intergenic 35.0%
AAAACAGTTAGGATGTTAGG+TGG - chr8_1:77344938-77344957 Msa1215900:intron 35.0%
TTCAAATACCAGTCTCACAT+TGG + chr8_1:77344988-77345007 None:intergenic 35.0%
ACTCAAATTAGCAGCAAACT+TGG + chr8_1:77345127-77345146 None:intergenic 35.0%
CTGCTAATTTGAGTGTGATT+GGG - chr8_1:77345133-77345152 Msa1215900:intron 35.0%
GAAGAGCTAATTAAGGAGTA+TGG - chr8_1:77345167-77345186 Msa1215900:intron 35.0%
!!! CTGGACTTCAAGTTCTTTTT+TGG - chr8_1:77345325-77345344 Msa1215900:five_prime_UTR 35.0%
!!! GACTTCAAGTTCTTTTTTGG+TGG - chr8_1:77345328-77345347 Msa1215900:five_prime_UTR 35.0%
!!! TTCAAGTTCTTTTTTGGTGG+TGG - chr8_1:77345331-77345350 Msa1215900:five_prime_UTR 35.0%
GACAACGCATAAAATATGCA+AGG + chr8_1:77345376-77345395 None:intergenic 35.0%
GTTTCCTCAATTGGGTCATT+AGG - chr8_1:77338249-77338268 Msa1215900:three_prime_UTR 40.0%
AAACCCTAATGACCCAATTG+AGG + chr8_1:77338256-77338275 None:intergenic 40.0%
! CAGTGGTGCCAATTAAAACA+AGG + chr8_1:77338405-77338424 None:intergenic 40.0%
CTGGAAATTAAGAGAAGCAG+CGG - chr8_1:77338516-77338535 Msa1215900:three_prime_UTR 40.0%
! AACAATGATGGGAGTAAGGT+TGG + chr8_1:77338551-77338570 None:intergenic 40.0%
GAGAATAGAAGAAACCCTTG+TGG + chr8_1:77338932-77338951 None:intergenic 40.0%
!!! ACAATTGTGTTTTAACGGCC+AGG - chr8_1:77339217-77339236 Msa1215900:intron 40.0%
!!! CAATTGTGTTTTAACGGCCA+GGG - chr8_1:77339218-77339237 Msa1215900:intron 40.0%
TTGTTATCCTTCATCTTCCC+TGG + chr8_1:77339238-77339257 None:intergenic 40.0%
!! TTAGGGGATTAGTCTAGTCT+AGG - chr8_1:77339295-77339314 Msa1215900:intron 40.0%
TGATTCACACGGAAAAGAGA+GGG + chr8_1:77339421-77339440 None:intergenic 40.0%
TTGATTCACACGGAAAAGAG+AGG + chr8_1:77339422-77339441 None:intergenic 40.0%
!!! CTTTTCTGGCTTGATTCACA+CGG + chr8_1:77339432-77339451 None:intergenic 40.0%
GTGTGAATCAAGCCAGAAAA+GGG - chr8_1:77339431-77339450 Msa1215900:intron 40.0%
CAAGTTTCTCAAGCTTGATG+AGG - chr8_1:77339879-77339898 Msa1215900:intron 40.0%
AAAGAAGAATCCGATCCATC+TGG - chr8_1:77339902-77339921 Msa1215900:intron 40.0%
CATGATTCACTGACATCTTG+AGG + chr8_1:77339950-77339969 None:intergenic 40.0%
CTATAAGCAGACTGCACATA+GGG + chr8_1:77339996-77340015 None:intergenic 40.0%
ACTATAAGCAGACTGCACAT+AGG + chr8_1:77339997-77340016 None:intergenic 40.0%
AATGATCTGACGATCACGAT+TGG + chr8_1:77340191-77340210 None:intergenic 40.0%
! TAGGGATTTGGAGTAAACTC+GGG + chr8_1:77340412-77340431 None:intergenic 40.0%
TCAGTACATGTGGCAAAATC+AGG - chr8_1:77340531-77340550 Msa1215900:intron 40.0%
!!! CATTCTTTGTTTTTCGGTGC+AGG - chr8_1:77340634-77340653 Msa1215900:intron 40.0%
GATTTATTGGAGAGCTTCAC+AGG + chr8_1:77340698-77340717 None:intergenic 40.0%
CTTTCTCAGAAATGGTAAGC+AGG - chr8_1:77340981-77341000 Msa1215900:intron 40.0%
TCTTACAGGTTGTGAGTTTC+TGG + chr8_1:77341047-77341066 None:intergenic 40.0%
ACTGGGGAATCAAGTGAATA+TGG - chr8_1:77341073-77341092 Msa1215900:intron 40.0%
!!! CAATTTTTGGTGCTGAGGAT+TGG + chr8_1:77341102-77341121 None:intergenic 40.0%
AAAGTTTGACTCAGCACAGA+TGG + chr8_1:77341190-77341209 None:intergenic 40.0%
ATCTGTGCTGAGTCAAACTT+TGG - chr8_1:77341189-77341208 Msa1215900:intron 40.0%
TCTGTGCTGAGTCAAACTTT+GGG - chr8_1:77341190-77341209 Msa1215900:intron 40.0%
! CAAAAAGGGGTCTTGTACAA+GGG + chr8_1:77341986-77342005 None:intergenic 40.0%
!! GGAATTAATGGGCTATGCAT+AGG - chr8_1:77342045-77342064 Msa1215900:intron 40.0%
GCATAGGCTCTCTTAGATAT+AGG - chr8_1:77342061-77342080 Msa1215900:intron 40.0%
! TCTAAGATGAATGTTGGGGA+TGG - chr8_1:77342239-77342258 Msa1215900:intron 40.0%
! TCTAAGATGACTGTTGAGGA+TGG - chr8_1:77342302-77342321 Msa1215900:intron 40.0%
AAACTCTGAATCAGCCAAGA+TGG + chr8_1:77342487-77342506 None:intergenic 40.0%
GTGGGAACATGTTAAAGTGA+GGG + chr8_1:77342985-77343004 None:intergenic 40.0%
AGTGGGAACATGTTAAAGTG+AGG + chr8_1:77342986-77343005 None:intergenic 40.0%
! TTGAAGCATGGGTTATGCAT+AGG - chr8_1:77343023-77343042 Msa1215900:intron 40.0%
GCACTATCTGTAGTCAATGT+GGG - chr8_1:77343130-77343149 Msa1215900:intron 40.0%
TGGCTAGAATTATAGGGTCT+AGG + chr8_1:77343307-77343326 None:intergenic 40.0%
CAGCTAAGAGAACAAGGTTA+AGG - chr8_1:77343677-77343696 Msa1215900:intron 40.0%
CAGCTTAGCTTCACTTTAGA+CGG - chr8_1:77344018-77344037 Msa1215900:intron 40.0%
ATGTAATTCAACCCACTGAG+CGG - chr8_1:77344356-77344375 Msa1215900:intron 40.0%
GTTGTATATTCATCGGATCC+TGG - chr8_1:77344405-77344424 Msa1215900:intron 40.0%
AATTGGCAATTTGGAAAGCC+AGG + chr8_1:77344426-77344445 None:intergenic 40.0%
!! AAGTTATTCTGAGGCATGTC+TGG - chr8_1:77344691-77344710 Msa1215900:intron 40.0%
TGATGAAAACGATTCCATCG+AGG - chr8_1:77344721-77344740 Msa1215900:intron 40.0%
!! GGTAAGCAATGGGTTAACAT+TGG + chr8_1:77344967-77344986 None:intergenic 40.0%
GTCTCACATTGGTAAGCAAT+GGG + chr8_1:77344977-77344996 None:intergenic 40.0%
AGTCTCACATTGGTAAGCAA+TGG + chr8_1:77344978-77344997 None:intergenic 40.0%
ATTGCTTACCAATGTGAGAC+TGG - chr8_1:77344977-77344996 Msa1215900:intron 40.0%
GCTGCTAATTTGAGTGTGAT+TGG - chr8_1:77345132-77345151 Msa1215900:intron 40.0%
CTAATTTGAGTGTGATTGGG+TGG - chr8_1:77345136-77345155 Msa1215900:intron 40.0%
GGAACAGGAAGAGCTAATTA+AGG - chr8_1:77345160-77345179 Msa1215900:intron 40.0%
!!! AGTTCTTTTTTGGTGGTGGT+CGG - chr8_1:77345335-77345354 Msa1215900:five_prime_UTR 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr8_1:77345369-77345388 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr8_1:77345370-77345389 None:intergenic 40.0%
CGCATAAAATATGCAAGGTC+CGG + chr8_1:77345371-77345390 None:intergenic 40.0%
AAGAGAAGCAGCGGAATTCA+TGG - chr8_1:77338525-77338544 Msa1215900:exon 45.0%
! TTTTGTCTTTCGCGCCACAA+GGG - chr8_1:77338915-77338934 Msa1215900:intron 45.0%
AACGGTGAGAGAATGTGTGT+AGG + chr8_1:77338959-77338978 None:intergenic 45.0%
GATTCACACGGAAAAGAGAG+GGG + chr8_1:77339420-77339439 None:intergenic 45.0%
CGTGTGAATCAAGCCAGAAA+AGG - chr8_1:77339430-77339449 Msa1215900:intron 45.0%
GTAAGGTCTTCCAGATGGAT+CGG + chr8_1:77339915-77339934 None:intergenic 45.0%
TGTGGCAGCATAGGATTGTT+TGG + chr8_1:77340065-77340084 None:intergenic 45.0%
ACAATCCTATGCTGCCACAT+TGG - chr8_1:77340066-77340085 Msa1215900:intron 45.0%
CAATCCTATGCTGCCACATT+GGG - chr8_1:77340067-77340086 Msa1215900:intron 45.0%
! ACGATCACGATTGGTTGACA+AGG + chr8_1:77340182-77340201 None:intergenic 45.0%
TATAATCATCCACCTGCAGC+TGG - chr8_1:77340433-77340452 Msa1215900:intron 45.0%
GGTTAGCAGTTACTAGAGGA+TGG - chr8_1:77340851-77340870 Msa1215900:intron 45.0%
CTGTGCTGAGTCAAACTTTG+GGG - chr8_1:77341191-77341210 Msa1215900:intron 45.0%
! CCAAAAAGGGGTCTTGTACA+AGG + chr8_1:77341987-77342006 None:intergenic 45.0%
! CCTTGTACAAGACCCCTTTT+TGG - chr8_1:77341984-77342003 Msa1215900:intron 45.0%
CCATGCTTCAAGCCAAAAAG+GGG + chr8_1:77341999-77342018 None:intergenic 45.0%
CCCATGCTTCAAGCCAAAAA+GGG + chr8_1:77342000-77342019 None:intergenic 45.0%
!!! CCCTTTTTGGCTTGAAGCAT+GGG - chr8_1:77341997-77342016 Msa1215900:intron 45.0%
! TTGAAGCATGGGCTATGCAT+AGG - chr8_1:77342008-77342027 Msa1215900:intron 45.0%
AGGAAAATCCTGCCACAGAA+AGG + chr8_1:77342201-77342220 None:intergenic 45.0%
TGTTGAGGATGGTGAGAGTA+AGG - chr8_1:77342313-77342332 Msa1215900:intron 45.0%
! CTTGGCTGATTCAGAGTTTG+AGG - chr8_1:77342488-77342507 Msa1215900:intron 45.0%
ACCCCATTTGTAATCACCGT+GGG - chr8_1:77342885-77342904 Msa1215900:intron 45.0%
TCCCACGGTGATTACAAATG+GGG + chr8_1:77342889-77342908 None:intergenic 45.0%
CTCCCACGGTGATTACAAAT+GGG + chr8_1:77342890-77342909 None:intergenic 45.0%
TCTCCCACGGTGATTACAAA+TGG + chr8_1:77342891-77342910 None:intergenic 45.0%
ACCGTGGGAGAAAAACACAA+GGG - chr8_1:77342900-77342919 Msa1215900:intron 45.0%
! ACCCTTGTGTTTTTCTCCCA+CGG + chr8_1:77342904-77342923 None:intergenic 45.0%
TCCCACTTATAAGACCCCTA+TGG - chr8_1:77342999-77343018 Msa1215900:intron 45.0%
! GCCATAGGGGTCTTATAAGT+GGG + chr8_1:77343003-77343022 None:intergenic 45.0%
! AGCCATAGGGGTCTTATAAG+TGG + chr8_1:77343004-77343023 None:intergenic 45.0%
AACCCATGCTTCAAGCCATA+GGG + chr8_1:77343017-77343036 None:intergenic 45.0%
TAACCCATGCTTCAAGCCAT+AGG + chr8_1:77343018-77343037 None:intergenic 45.0%
! CCTTATGAGTCGGTCTTATG+AGG + chr8_1:77343076-77343095 None:intergenic 45.0%
! CCTCATAAGACCGACTCATA+AGG - chr8_1:77343073-77343092 Msa1215900:CDS 45.0%
! TAAGACCGACTCATAAGGTG+AGG - chr8_1:77343078-77343097 Msa1215900:CDS 45.0%
ACGTTCCTCACCTTATGAGT+CGG + chr8_1:77343086-77343105 None:intergenic 45.0%
GGCACTATCTGTAGTCAATG+TGG - chr8_1:77343129-77343148 Msa1215900:intron 45.0%
GGGAATCAGCTAAGAGAACA+AGG - chr8_1:77343671-77343690 Msa1215900:intron 45.0%
! CGTCTAAAGTGAAGCTAAGC+TGG + chr8_1:77344020-77344039 None:intergenic 45.0%
!! GCTCAGTGGGTTGAATTACA+TGG + chr8_1:77344357-77344376 None:intergenic 45.0%
TCTTCACGTTCTTGCTGCTA+AGG + chr8_1:77344614-77344633 None:intergenic 45.0%
ATTTGAGTGTGATTGGGTGG+TGG - chr8_1:77345139-77345158 Msa1215900:intron 45.0%
CAGTTACAATGTCAAGCAGC+AGG + chr8_1:77345227-77345246 None:intergenic 45.0%
! CTGCTGCTTGACATTGTAAC+TGG - chr8_1:77345225-77345244 Msa1215900:five_prime_UTR 45.0%
!!! GTTCTTTTTTGGTGGTGGTC+GGG - chr8_1:77345336-77345355 Msa1215900:five_prime_UTR 45.0%
!!! TTCTTTTTTGGTGGTGGTCG+GGG - chr8_1:77345337-77345356 Msa1215900:five_prime_UTR 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr8_1:77345398-77345417 None:intergenic 45.0%
!! ATTTATTTATAAACAAAAAT+AGG + chr8_1:77338844-77338863 None:intergenic 5.0%
!! ATATAAAATTGAAAAAATAA+GGG + chr8_1:77344763-77344782 None:intergenic 5.0%
AATTGGCACCACTGCGAAAG+TGG - chr8_1:77338411-77338430 Msa1215900:three_prime_UTR 50.0%
GAGGAGCTAGCTAGCAACTT+CGG - chr8_1:77338433-77338452 Msa1215900:three_prime_UTR 50.0%
AACTTCGGTGGCTGTTCTTC+AGG - chr8_1:77338448-77338467 Msa1215900:three_prime_UTR 50.0%
! CTTTTGTCTTTCGCGCCACA+AGG - chr8_1:77338914-77338933 Msa1215900:intron 50.0%
TTAACGGCCAGGGAAGATGA+AGG - chr8_1:77339228-77339247 Msa1215900:intron 50.0%
TGCATAGGTGAAGCCCAATG+TGG + chr8_1:77340083-77340102 None:intergenic 50.0%
ACATTGGGCTTCACCTATGC+AGG - chr8_1:77340082-77340101 Msa1215900:CDS 50.0%
ATGTAAGAACCAGCTGCAGG+TGG + chr8_1:77340445-77340464 None:intergenic 50.0%
CTCATGTAAGAACCAGCTGC+AGG + chr8_1:77340448-77340467 None:intergenic 50.0%
! CAGGTGTGTTGTTCTTGCCA+TGG + chr8_1:77340603-77340622 None:intergenic 50.0%
TATTTCTTTAGGTGCGGGGC+TGG - chr8_1:77340828-77340847 Msa1215900:intron 50.0%
ATTTCTTTAGGTGCGGGGCT+GGG - chr8_1:77340829-77340848 Msa1215900:intron 50.0%
! CTGGGGTTAGCAGTTACTAG+AGG - chr8_1:77340847-77340866 Msa1215900:intron 50.0%
! CTGAGTCAAACTTTGGGGAC+AGG - chr8_1:77341196-77341215 Msa1215900:intron 50.0%
!!! CCCCTTTTTGGCTTGAAGCA+TGG - chr8_1:77341996-77342015 Msa1215900:intron 50.0%
GCCCATGCTTCAAGCCAAAA+AGG + chr8_1:77342001-77342020 None:intergenic 50.0%
TGTTGGGGATGGTGAGAACA+AGG - chr8_1:77342250-77342269 Msa1215900:intron 50.0%
GAGTTTGAGGACAGTCGTCA+AGG - chr8_1:77342501-77342520 Msa1215900:intron 50.0%
GACCCCATTTGTAATCACCG+TGG - chr8_1:77342884-77342903 Msa1215900:intron 50.0%
CACCGTGGGAGAAAAACACA+AGG - chr8_1:77342899-77342918 Msa1215900:intron 50.0%
ACCCCTATGGCTTGAAGCAT+GGG - chr8_1:77343012-77343031 Msa1215900:intron 50.0%
ACCCATGCTTCAAGCCATAG+GGG + chr8_1:77343016-77343035 None:intergenic 50.0%
GCATAGGTTCTCGCAGACAT+TGG - chr8_1:77343039-77343058 Msa1215900:intron 50.0%
CGTGTGGCAACTGATCTTGT+AGG - chr8_1:77343353-77343372 Msa1215900:CDS 50.0%
GGTACATACTAGACCATGGC+TGG - chr8_1:77343705-77343724 Msa1215900:intron 50.0%
AAGCTAAGCTGGCAGAGTTC+TGG + chr8_1:77344009-77344028 None:intergenic 50.0%
CCTCATGAGCTTAGCTCAGT+TGG + chr8_1:77345403-77345422 None:intergenic 50.0%
CCAACTGAGCTAAGCTCATG+AGG - chr8_1:77345400-77345419 Msa1215900:five_prime_UTR 50.0%
CTGAGCTAAGCTCATGAGGA+CGG - chr8_1:77345404-77345423 Msa1215900:five_prime_UTR 50.0%
TAGCTCCTCCACTTTCGCAG+TGG + chr8_1:77338422-77338441 None:intergenic 55.0%
GAGCTAGCTAGCAACTTCGG+TGG - chr8_1:77338436-77338455 Msa1215900:three_prime_UTR 55.0%
GTGGCTGTTCTTCAGGACGA+CGG - chr8_1:77338455-77338474 Msa1215900:three_prime_UTR 55.0%
TGTTCTTCAGGACGACGGTG+TGG - chr8_1:77338460-77338479 Msa1215900:three_prime_UTR 55.0%
GTTCTTCAGGACGACGGTGT+GGG - chr8_1:77338461-77338480 Msa1215900:three_prime_UTR 55.0%
GAAGCCCAATGTGGCAGCAT+AGG + chr8_1:77340074-77340093 None:intergenic 55.0%
TTTCTTTAGGTGCGGGGCTG+GGG - chr8_1:77340830-77340849 Msa1215900:intron 55.0%
! AACTTTGGGGACAGGCGTCA+AGG - chr8_1:77341204-77341223 Msa1215900:intron 55.0%
GACCCCTATGGCTTGAAGCA+TGG - chr8_1:77343011-77343030 Msa1215900:intron 55.0%
AGTCTGCTCTTCCGCTCAGT+GGG + chr8_1:77344370-77344389 None:intergenic 55.0%
AAGTCTGCTCTTCCGCTCAG+TGG + chr8_1:77344371-77344390 None:intergenic 55.0%
!! GTGTGATTGGGTGGTGGAAC+AGG - chr8_1:77345145-77345164 Msa1215900:intron 55.0%
TGGCACCACTGCGAAAGTGG+AGG - chr8_1:77338414-77338433 Msa1215900:three_prime_UTR 60.0%
CCATGGCTGGTGCAATGCAG+CGG - chr8_1:77343718-77343737 Msa1215900:intron 60.0%
CATGGCTGGTGCAATGCAGC+GGG - chr8_1:77343719-77343738 Msa1215900:intron 60.0%
CCGCTGCATTGCACCAGCCA+TGG + chr8_1:77343721-77343740 None:intergenic 65.0%
GGTGGTCGGGGTTTGAACCC+CGG - chr8_1:77345349-77345368 Msa1215900:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 77338243 77345535 77338243 ID=Msa1215900;Name=Msa1215900
chr8_1 mRNA 77338243 77345535 77338243 ID=Msa1215900-mRNA-1;Parent=Msa1215900;Name=Msa1215900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=401|0.77|0.9|1|0.77|0.8|10|300|328
chr8_1 exon 77338243 77338611 77338243 ID=Msa1215900-mRNA-1:exon:26679;Parent=Msa1215900-mRNA-1
chr8_1 exon 77339036 77339158 77339036 ID=Msa1215900-mRNA-1:exon:26678;Parent=Msa1215900-mRNA-1
chr8_1 exon 77340073 77340150 77340073 ID=Msa1215900-mRNA-1:exon:26677;Parent=Msa1215900-mRNA-1
chr8_1 exon 77341211 77341299 77341211 ID=Msa1215900-mRNA-1:exon:26676;Parent=Msa1215900-mRNA-1
chr8_1 exon 77341455 77341566 77341455 ID=Msa1215900-mRNA-1:exon:26675;Parent=Msa1215900-mRNA-1
chr8_1 exon 77342586 77342810 77342586 ID=Msa1215900-mRNA-1:exon:26674;Parent=Msa1215900-mRNA-1
chr8_1 exon 77343048 77343122 77343048 ID=Msa1215900-mRNA-1:exon:26673;Parent=Msa1215900-mRNA-1
chr8_1 exon 77343226 77343381 77343226 ID=Msa1215900-mRNA-1:exon:26672;Parent=Msa1215900-mRNA-1
chr8_1 exon 77343823 77343915 77343823 ID=Msa1215900-mRNA-1:exon:26671;Parent=Msa1215900-mRNA-1
chr8_1 exon 77345168 77345535 77345168 ID=Msa1215900-mRNA-1:exon:26670;Parent=Msa1215900-mRNA-1
chr8_1 five_prime_UTR 77345168 77345535 77345168 ID=Msa1215900-mRNA-1:five_prime_utr;Parent=Msa1215900-mRNA-1
chr8_1 five_prime_UTR 77343883 77343915 77343883 ID=Msa1215900-mRNA-1:five_prime_utr;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77343823 77343882 77343823 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77343226 77343381 77343226 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77343048 77343122 77343048 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77342586 77342810 77342586 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77341455 77341566 77341455 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77341211 77341299 77341211 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77340073 77340150 77340073 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77339036 77339158 77339036 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 CDS 77338543 77338611 77338543 ID=Msa1215900-mRNA-1:cds;Parent=Msa1215900-mRNA-1
chr8_1 three_prime_UTR 77338243 77338542 77338243 ID=Msa1215900-mRNA-1:three_prime_utr;Parent=Msa1215900-mRNA-1
Gene Sequence

>Msa1215900

ATGAGGAAAGAAGAATCCGATCCATCTGGAAGACCTTACTATTTTGTGGTACCTCAAGATGCTTGTTACAATCCCGAGTTTACTCCAAATCCCTATTATAATCATCCACCTGCAGCTGGTTCTTACATGAGTCATCAGTCTGAAGCTGATTCTTACTTGAATCATCAGTATGCAGATGGTTCTTACTTGAATCATCAGTACATGTGGCAAAATCAGGAAAACAACACACTGCTTCAATCTAATGCGCTACATGATCCTGTGAAGCTCTCCAATAAATCTCTACTAGCTGAGGATGCTGCAATTGCTTTCTCAGAAATGGTAAGCAGGAATATTGTCAAAAGTAACCCAGATTCCAACCAATTATTTACCAGAAACTCACAACCTGTAAGATTAATAACTGGGGAATCAAGTGAATATGGAAACCAATCCTCAGCACCAAAAATTGATGTTGGAGATGCTGATCGAGTTGTGTTAGTGAACCAGTATTACAACAATTTCTTTGTAGAAAATCCATCTGATTTTCCTATATGTAAGAAGCAGATATCTAAGATGAATGTTGGGGATGGTGAGAACAAGGATTTATCTTTTGGTTGGAAGGAGCAGAAATCTAAGATGACTGTTGAGGATGAAAAACCATCTTGGCTGATTCAGAGTTTGAGGACAGTCGTCAAGGAATCTGATTCTGATGTTGACGCTGATGCTCAACTAAAATATATGGAAGCTGATGATATTAGAAAAGAAAGAAAAAGACAATCAAACAGGGAATCAGCTAAGAGAACAAGGTTAAGGAAAAAGCAAGAACGTGAAGATCGTACAAAGATAGACACTCTTAATGAAGAAATTGCTGTCCTAACAAAACAACTAAAAAGTTATTCTGAGGCATGTCTGGAGCTCGCTGATGAAAACGATTCCATCGAGGAAGAGCTAATTAAGGAGTATGGACTAGAATCAATTGCAGATCTATTGCTCATGAAGCCTGCTGCTTGA
Protein sequence

>Msa1215900

MRKEESDPSGRPYYFVVPQDACYNPEFTPNPYYNHPPAAGSYMSHQSEADSYLNHQYADGSYLNHQYMWQNQENNTLLQSNALHDPVKLSNKSLLAEDAAIAFSEMVSRNIVKSNPDSNQLFTRNSQPVRLITGESSEYGNQSSAPKIDVGDADRVVLVNQYYNNFFVENPSDFPICKKQISKMNVGDGENKDLSFGWKEQKSKMTVEDEKPSWLIQSLRTVVKESDSDVDADAQLKYMEADDIRKERKRQSNRESAKRTRLRKKQEREDRTKIDTLNEEIAVLTKQLKSYSEACLELADENDSIEEELIKEYGLESIADLLLMKPAA*