AlfalfaGEDB | Msa0684530

M. sativa cultivar zhongmu-4 / Msa0684530

KEGG: K00128
GO: GO:0003674 GO:0003824 GO:0004029 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016491 GO:0016620 GO:0016903 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055114
PFAM: PF00171.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684530	XP_013456185.1	97.143	490	14	0	1	490	1	490	0.0	981

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684530	sp\|Q70E96\|AL3F1_ARATH	54.105	475	218	0	7	481	10	484	0.0	559

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684530	A0A072ULE1	97.143	490	14	0	1	490	1	490	0.0	981

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004350	Msa0684530	0.864779	9.507898e-65	-8.615850e-47
Msa0006700	Msa0684530	0.807347	5.283626e-50	-8.615850e-47
Msa0007230	Msa0684530	0.844700	6.426899e-59	-8.615850e-47
Msa0010460	Msa0684530	-0.803168	3.964415e-49	-8.615850e-47
Msa0017120	Msa0684530	0.828929	6.840111e-55	-8.615850e-47
Msa0018220	Msa0684530	0.843913	1.045507e-58	-8.615850e-47
Msa0020630	Msa0684530	0.801111	1.050444e-48	-8.615850e-47
Msa0027540	Msa0684530	0.812038	5.182979e-51	-8.615850e-47
Msa0030000	Msa0684530	0.812417	4.284187e-51	-8.615850e-47
Msa0030730	Msa0684530	0.829725	4.383785e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684530	MtrunA17_Chr4g0032441	97.143	490	14	0	1	490	1	490	0.0	981
Msa0684530	MtrunA17_Chr2g0328781	71.546	485	136	2	3	487	19	501	0.0	729
Msa0684530	MtrunA17_Chr8g0372381	56.813	477	199	2	9	481	13	486	0.0	574
Msa0684530	MtrunA17_Chr8g0384741	50.851	470	228	1	9	478	73	539	6.96e-165	477
Msa0684530	MtrunA17_Chr3g0124811	50.213	470	231	1	9	478	22	488	2.79e-164	473
Msa0684530	MtrunA17_Chr1g0159811	49.647	425	207	2	9	433	20	437	4.47e-140	412
Msa0684530	MtrunA17_Chr3g0129271	54.545	209	93	1	175	381	34	242	9.05e-75	236
Msa0684530	MtrunA17_Chr2g0294411	28.375	437	279	12	12	424	88	514	1.70e-37	145
Msa0684530	MtrunA17_Chr3g0118081	28.633	461	307	11	4	451	79	530	1.55e-36	141
Msa0684530	MtrunA17_Chr2g0310091	29.080	337	227	9	101	431	193	523	3.52e-35	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0684530	AT4G36250.1	54.105	475	218	0	7	481	10	484	0.0	559
Msa0684530	AT1G44170.1	50.000	480	236	2	1	479	7	483	3.16e-168	484
Msa0684530	AT1G44170.2	50.000	480	236	2	1	479	7	483	3.16e-168	484
Msa0684530	AT4G34240.1	50.636	472	230	1	12	483	82	550	5.83e-162	470
Msa0684530	AT4G34240.4	50.636	472	230	1	12	483	67	535	6.54e-162	469
Msa0684530	AT1G44170.3	52.048	415	196	1	65	479	9	420	1.81e-156	451
Msa0684530	AT4G34240.3	51.463	410	196	1	74	483	2	408	1.73e-145	423
Msa0684530	AT4G34240.2	52.244	312	146	1	12	323	82	390	5.50e-100	306
Msa0684530	AT3G66658.2	27.137	468	310	10	20	462	96	557	4.38e-38	147
Msa0684530	AT3G66658.1	27.540	443	295	9	20	442	96	532	5.20e-38	146

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Find 123 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGAATGATATCTTCA+TGG	0.451423	4_4:+47915774	Msa0684530:CDS
AAAGAAAACTAATCATTGAT+CGG	0.576899	4_4:-47921372	None:intergenic
AAAGAGTTGCTGTTCAAAAT+TGG	0.260422	4_4:+47920016	Msa0684530:CDS
AAAGCCATTAAGGTTATCCA+AGG	0.556662	4_4:+47919121	Msa0684530:CDS
AAAGTGAGTCCACAACTGCA+GGG	0.644119	4_4:-47919486	None:intergenic
AAATAAGTTTCAACTACTTG+AGG	0.566706	4_4:+47921047	Msa0684530:CDS
AAATAGAGGCTTTGTACATT+AGG	0.375102	4_4:-47921344	None:intergenic
AACATTATTGCTGCATCAAG+TGG	0.523734	4_4:-47920418	None:intergenic
AACATTCCAACACTATAGCA+AGG	0.624404	4_4:+47920173	Msa0684530:CDS
AACTATCCTTGCTATAGTGT+TGG	0.490148	4_4:-47920179	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAATGCATTCCTTGGAT+TGG	-	chr4_4:47915904-47915923	None:intergenic	30.0%
TAATGTGTGTACGAATCATT+TGG	-	chr4_4:47915947-47915966	None:intergenic	30.0%
ATGATTCGTACACACATTAA+TGG	+	chr4_4:47915948-47915967	Msa0684530:intron	30.0%
ACAAAACTATCTCGTTAGTT+AGG	+	chr4_4:47915980-47915999	Msa0684530:intron	30.0%
GTATTCTCATCTATAGATGA+AGG	-	chr4_4:47916121-47916140	None:intergenic	30.0%
TATGGATCAATGCTTGAAAA+TGG	+	chr4_4:47916177-47916196	Msa0684530:intron	30.0%
TCTAGCATTTACACAAGAAT+AGG	+	chr4_4:47916489-47916508	Msa0684530:intron	30.0%
TCTATTCAAGCAAAGTTATG+CGG	-	chr4_4:47916522-47916541	None:intergenic	30.0%
AAAGTGAAAATCACACCTTA+AGG	-	chr4_4:47917208-47917227	None:intergenic	30.0%
CTAAAAGACACCTTCATAAA+AGG	+	chr4_4:47917243-47917262	Msa0684530:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	47915631	47921768	47915631	ID=Msa0684530;Name=Msa0684530
chr4_4	mRNA	47915631	47921768	47915631	ID=Msa0684530-mRNA-1;Parent=Msa0684530;Name=Msa0684530-mRNA-1;_AED=0.35;_eAED=0.35;_QI=24\|1\|1\|1\|1\|1\|10\|613\|490
chr4_4	exon	47915631	47915846	47915631	ID=Msa0684530-mRNA-1:exon:11847;Parent=Msa0684530-mRNA-1
chr4_4	exon	47918489	47918557	47918489	ID=Msa0684530-mRNA-1:exon:11848;Parent=Msa0684530-mRNA-1
chr4_4	exon	47918684	47918780	47918684	ID=Msa0684530-mRNA-1:exon:11849;Parent=Msa0684530-mRNA-1
chr4_4	exon	47918996	47919202	47918996	ID=Msa0684530-mRNA-1:exon:11850;Parent=Msa0684530-mRNA-1
chr4_4	exon	47919404	47919528	47919404	ID=Msa0684530-mRNA-1:exon:11851;Parent=Msa0684530-mRNA-1
chr4_4	exon	47919933	47920037	47919933	ID=Msa0684530-mRNA-1:exon:11852;Parent=Msa0684530-mRNA-1
chr4_4	exon	47920124	47920296	47920124	ID=Msa0684530-mRNA-1:exon:11853;Parent=Msa0684530-mRNA-1
chr4_4	exon	47920387	47920477	47920387	ID=Msa0684530-mRNA-1:exon:11854;Parent=Msa0684530-mRNA-1
chr4_4	exon	47920653	47920802	47920653	ID=Msa0684530-mRNA-1:exon:11855;Parent=Msa0684530-mRNA-1
chr4_4	exon	47920892	47921768	47920892	ID=Msa0684530-mRNA-1:exon:11856;Parent=Msa0684530-mRNA-1
chr4_4	five_prime_UTR	47915631	47915654	47915631	ID=Msa0684530-mRNA-1:five_prime_utr;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47915655	47915846	47915655	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47918489	47918557	47918489	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47918684	47918780	47918684	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47918996	47919202	47918996	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47919404	47919528	47919404	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47919933	47920037	47919933	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47920124	47920296	47920124	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47920387	47920477	47920387	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47920653	47920802	47920653	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	CDS	47920892	47921155	47920892	ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4	three_prime_UTR	47921156	47921768	47921156	ID=Msa0684530-mRNA-1:three_prime_utr;Parent=Msa0684530-mRNA-1

Gene Sequence

>Msa0684530

ATGGGAACTTTGGAGATAGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATCTTCATGGCCCTCATGCAAGATTTAGGGAAACACCGTCTTGAAGCTTTTAGAGACGAGATAGGAACGTTAGTGAAGACCTTAAATCTTGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTTTGGGTCTCGTCCTCATTATTTCATCTTGGAATTTACCCTTTGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGTAGCAGTGTTAAAACCTTCAGAGTTGTCTCCTGCATGTTCCTCTCTACTTGCTTCTGGCATTACCGCTTACTTGGACAATAAAGCCATTAAGGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGGCCGTGAAGCGGATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATCGTCGAAAAGAGTTGCTGTTCAAAATTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAATCAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAAGGTTCAAGAATCTGTGGTTTATGGTGGCTCAATTGACGAAGAAAACTTATTTATTGAGCCAACAATTTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCACTACTTCCAATTATTACTGTGGAGAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAACCTCTTGCCCTTTATGTATTCACCAAAAACCAAACATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAATATGCAGCAGATAGTCTACCATTTGGAGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCTTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>Msa0684530

MGTLEIDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGLVLIISSWNLPFGLSLEPLIGAIAAGNVAVLKPSELSPACSSLLASGITAYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNNQHLTRLKKLLDDQKVQESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQNRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC*