AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0684530


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684530 MtrunA17_Chr4g0032441 97.143 490 14 0 1 490 1 490 0.0 981
Msa0684530 MtrunA17_Chr2g0328781 71.546 485 136 2 3 487 19 501 0.0 729
Msa0684530 MtrunA17_Chr8g0372381 56.813 477 199 2 9 481 13 486 0.0 574
Msa0684530 MtrunA17_Chr8g0384741 50.851 470 228 1 9 478 73 539 6.96e-165 477
Msa0684530 MtrunA17_Chr3g0124811 50.213 470 231 1 9 478 22 488 2.79e-164 473
Msa0684530 MtrunA17_Chr1g0159811 49.647 425 207 2 9 433 20 437 4.47e-140 412
Msa0684530 MtrunA17_Chr3g0129271 54.545 209 93 1 175 381 34 242 9.05e-75 236
Msa0684530 MtrunA17_Chr2g0294411 28.375 437 279 12 12 424 88 514 1.70e-37 145
Msa0684530 MtrunA17_Chr3g0118081 28.633 461 307 11 4 451 79 530 1.55e-36 141
Msa0684530 MtrunA17_Chr2g0310091 29.080 337 227 9 101 431 193 523 3.52e-35 137
Msa0684530 MtrunA17_Chr4g0009161 63.107 103 37 1 174 275 118 220 8.92e-35 130
Msa0684530 MtrunA17_Chr4g0059521 28.698 453 290 13 20 451 60 500 1.86e-34 135
Msa0684530 MtrunA17_Chr3g0118121 27.887 459 313 10 4 451 49 500 4.02e-34 134
Msa0684530 MtrunA17_Chr3g0117861 29.197 411 269 14 38 438 135 533 3.07e-30 123
Msa0684530 MtrunA17_Chr4g0059221 28.702 439 286 16 13 438 111 535 3.30e-30 123
Msa0684530 MtrunA17_Chr8g0390651 30.966 352 220 13 99 438 154 494 1.36e-29 121
Msa0684530 MtrunA17_Chr8g0390631 28.693 352 228 10 99 438 145 485 1.47e-28 118
Msa0684530 MtrunA17_Chr8g0365221 27.805 410 276 13 38 438 134 532 1.64e-27 115
Msa0684530 MtrunA17_Chr6g0485301 29.345 351 227 10 99 438 153 493 4.20e-27 114
Msa0684530 MtrunA17_Chr6g0485311 28.829 333 214 11 104 424 156 477 1.98e-23 103
Msa0684530 MtrunA17_Chr4g0074171 29.375 320 212 10 105 420 158 467 1.05e-22 100
Msa0684530 MtrunA17_Chr1g0149961 27.273 319 220 7 105 420 158 467 1.37e-19 91.7
Msa0684530 MtrunA17_Chr4g0049641 25.833 360 230 12 102 440 174 517 1.03e-17 85.9
Msa0684530 MtrunA17_Chr2g0279751 26.462 359 229 11 102 440 147 490 1.38e-17 85.5
Msa0684530 MtrunA17_Chr2g0300801 26.062 353 240 11 102 444 152 493 9.81e-17 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0684530 AT4G36250.1 54.105 475 218 0 7 481 10 484 0.0 559
Msa0684530 AT1G44170.1 50.000 480 236 2 1 479 7 483 3.16e-168 484
Msa0684530 AT1G44170.2 50.000 480 236 2 1 479 7 483 3.16e-168 484
Msa0684530 AT4G34240.1 50.636 472 230 1 12 483 82 550 5.83e-162 470
Msa0684530 AT4G34240.4 50.636 472 230 1 12 483 67 535 6.54e-162 469
Msa0684530 AT1G44170.3 52.048 415 196 1 65 479 9 420 1.81e-156 451
Msa0684530 AT4G34240.3 51.463 410 196 1 74 483 2 408 1.73e-145 423
Msa0684530 AT4G34240.2 52.244 312 146 1 12 323 82 390 5.50e-100 306
Msa0684530 AT3G66658.2 27.137 468 310 10 20 462 96 557 4.38e-38 147
Msa0684530 AT3G66658.1 27.540 443 295 9 20 442 96 532 5.20e-38 146
Msa0684530 AT1G74920.2 28.736 435 292 11 27 451 69 495 5.52e-38 145
Msa0684530 AT1G74920.1 28.736 435 292 11 27 451 74 500 6.93e-38 145
Msa0684530 AT1G79440.1 29.970 337 224 9 101 431 184 514 3.05e-37 144
Msa0684530 AT3G48170.1 27.045 440 293 12 27 451 74 500 8.44e-34 134
Msa0684530 AT1G23800.1 27.397 438 293 14 13 438 101 525 3.48e-29 120
Msa0684530 AT3G48000.1 28.696 345 231 9 102 438 192 529 1.06e-26 113
Msa0684530 AT3G24503.1 26.437 348 235 11 102 438 155 492 5.32e-24 105
Msa0684530 AT2G24270.2 27.900 319 218 7 105 420 198 507 6.70e-23 102
Msa0684530 AT2G24270.4 27.300 337 233 7 105 438 158 485 1.05e-22 101
Msa0684530 AT2G24270.3 27.300 337 233 7 105 438 158 485 1.26e-22 101
Msa0684530 AT2G24270.1 27.300 337 233 7 105 438 158 485 1.26e-22 101
Msa0684530 AT1G54100.2 24.857 350 242 10 105 444 154 492 7.93e-18 86.7
Msa0684530 AT1G54100.1 24.857 350 242 10 105 444 154 492 7.93e-18 86.7
Msa0684530 AT1G23800.2 29.242 277 175 12 13 279 101 366 1.81e-13 72.4

Find 123 sgRNAs with CRISPR-Local

Find 324 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTATAATTATGATTATT+TGG 0.060046 4_4:+47921071 Msa0684530:CDS
ACACTTTAATGCAAGATTTA+AGG 0.145432 4_4:-47918508 None:intergenic
ATGGCCCTCATGCAAGATTT+AGG 0.175581 4_4:+47915793 Msa0684530:CDS
TGGACTCACTTTCATCTTCT+TGG 0.177885 4_4:+47919497 Msa0684530:CDS
GGATTGGTCCTTGTTATTCT+TGG 0.192443 4_4:+47921093 Msa0684530:CDS
CGGATTCTTGTGGGAAAATA+TGG 0.217738 4_4:+47919945 Msa0684530:CDS
TAAAATTTCTTATTATATAA+AGG 0.222774 4_4:-47921300 None:intergenic
CTTGGACAATAAAGCCATTA+AGG 0.225321 4_4:+47919111 Msa0684530:CDS
ATTTATTGAGCCAACAATTT+TGG 0.233126 4_4:+47920387 Msa0684530:CDS
TGGGACAAAATCTTCTTTAC+AGG 0.243473 4_4:+47919181 Msa0684530:CDS
GTTCAAGAATCTGTGGTTTA+TGG 0.246288 4_4:+47920250 Msa0684530:CDS
TGGAGAGAATCACAACTAAA+AGG 0.259745 4_4:+47915730 Msa0684530:CDS
AAAGAGTTGCTGTTCAAAAT+TGG 0.260422 4_4:+47920016 Msa0684530:CDS
CCAAAGAGGTATCAAAATAA+TGG 0.272297 4_4:+47915636 Msa0684530:exon
ATGAAACTTACAGTAATAAT+TGG 0.278416 4_4:-47920466 None:intergenic
TGTTCCTCTCTACTTGCTTC+TGG 0.283578 4_4:+47919076 Msa0684530:CDS
TTCATCTTCTTGGGATTTAG+AGG 0.286545 4_4:+47919507 Msa0684530:CDS
CCACCCAACTCCAGTGTTAC+AGG 0.297157 4_4:-47919457 None:intergenic
GGAGTAGGTGGAAGTGGATT+TGG 0.307069 4_4:+47920919 Msa0684530:CDS
TCTTATAATTATGATTATTT+GGG 0.326416 4_4:+47921072 Msa0684530:CDS
TGGCCCTCATGCAAGATTTA+GGG 0.327127 4_4:+47915794 Msa0684530:CDS
TCATTCTGTTCTGCAATGTT+TGG 0.329437 4_4:-47920730 None:intergenic
ACATAAAGGGCAAGAGGTTT+AGG 0.337563 4_4:-47920695 None:intergenic
GGACTCACTTTCATCTTCTT+GGG 0.339156 4_4:+47919498 Msa0684530:CDS
TGAGTTTGCAACTCTTATAT+AGG 0.362355 4_4:+47921213 Msa0684530:three_prime_UTR
AGAAATTGTTCATGAGCCTT+TGG 0.368196 4_4:+47918719 Msa0684530:CDS
AAATAGAGGCTTTGTACATT+AGG 0.375102 4_4:-47921344 None:intergenic
GAAATTGTTCATGAGCCTTT+GGG 0.381170 4_4:+47918720 Msa0684530:CDS
CATTAAAGTGTCTGAAAGAT+TGG 0.382376 4_4:+47918520 Msa0684530:CDS
TTCTGGCATTACCGCTTACT+TGG 0.386362 4_4:+47919093 Msa0684530:CDS
CTTGAAAGCAATGCTATTGC+AGG 0.388263 4_4:-47918693 None:intergenic
CAAAGAGGTATCAAAATAAT+GGG 0.394252 4_4:+47915637 Msa0684530:exon
GCACCTGACCCCTGTAACAC+TGG 0.415048 4_4:+47919447 Msa0684530:CDS
CTATAGTGTTGGAATGTTGT+GGG 0.417700 4_4:-47920168 None:intergenic
TATCAAAATAATGGGAACTT+TGG 0.423131 4_4:+47915645 Msa0684530:exon
CTTCTCCTTTGAGAAAATTG+AGG 0.428608 4_4:-47921408 None:intergenic
TAATTATGATTATTTGGGAT+TGG 0.431846 4_4:+47921077 Msa0684530:CDS
TCATCTTGGAATTTACCCTT+TGG 0.435655 4_4:+47918759 Msa0684530:CDS
TTGTCTTTGGAGCCACTGAT+AGG 0.437757 4_4:+47918998 Msa0684530:CDS
GAAAGTGAGTCCACAACTGC+AGG 0.443232 4_4:-47919487 None:intergenic
GAAACTTCTTGATGATCAAA+AGG 0.443321 4_4:+47920228 Msa0684530:CDS
GTGTGGATCAAGAAAATGTT+TGG 0.443390 4_4:+47920139 Msa0684530:CDS
TTAACTAACAAGGCAAGATC+TGG 0.446747 4_4:-47921137 None:intergenic
ATTGATCGGTTCGAAAATAG+AGG 0.447851 4_4:-47921358 None:intergenic
TCCCACAAGAATCCGCTTCA+CGG 0.447941 4_4:-47919937 None:intergenic
AAAAGAGAATGATATCTTCA+TGG 0.451423 4_4:+47915774 Msa0684530:CDS
TCGTCCTCATTATTTCATCT+TGG 0.464002 4_4:+47918745 Msa0684530:CDS
GCAGCAGATAGTCTACCATT+TGG 0.464351 4_4:+47920895 Msa0684530:CDS
ACCCCTGTAACACTGGAGTT+GGG 0.465154 4_4:+47919454 Msa0684530:CDS
TTTGGAGGAGTAGGTGGAAG+TGG 0.473180 4_4:+47920913 Msa0684530:CDS
TGGAAAATGCCCTGCAGTTG+TGG 0.478847 4_4:+47919477 Msa0684530:CDS
TGCCTTGTTAGTTAATTAGC+GGG 0.481989 4_4:+47921145 Msa0684530:exon
TTATAAGGTGGAATTGATGA+AGG 0.484071 4_4:+47920117 Msa0684530:intron
CACCCAACTCCAGTGTTACA+GGG 0.484632 4_4:-47919456 None:intergenic
GCTATAGTGTTGGAATGTTG+TGG 0.485996 4_4:-47920169 None:intergenic
AACTATCCTTGCTATAGTGT+TGG 0.490148 4_4:-47920179 None:intergenic
AGTCTACCATTTGGAGGAGT+AGG 0.493102 4_4:+47920904 Msa0684530:CDS
ATGATATCTGAAACATCATC+TGG 0.495766 4_4:+47920749 Msa0684530:CDS
ACAGTAATAATTGGAAGTAG+TGG 0.495808 4_4:-47920457 None:intergenic
ACTCCAGTGTTACAGGGGTC+AGG 0.499908 4_4:-47919450 None:intergenic
AGCAATGCTATTGCAGGTAG+TGG 0.500402 4_4:-47918687 None:intergenic
TGAAACTTATTTGCAGTCCA+TGG 0.501038 4_4:-47921036 None:intergenic
GGAGAGAATCACAACTAAAA+GGG 0.502833 4_4:+47915731 Msa0684530:CDS
ACATTATTGCTGCATCAAGT+GGG 0.515989 4_4:-47920417 None:intergenic
GTGCAATCTCACAAATCAGT+TGG 0.519680 4_4:-47921460 None:intergenic
GCCGTGAAGCGGATTCTTGT+GGG 0.520458 4_4:+47919936 Msa0684530:CDS
AACATTATTGCTGCATCAAG+TGG 0.523734 4_4:-47920418 None:intergenic
CTGATAGGAGCTATAGCTGC+TGG 0.523994 4_4:+47919013 Msa0684530:CDS
GGAAAATATGGAACTTGTGC+TGG 0.526806 4_4:+47919957 Msa0684530:CDS
TTGCCTTGTTAGTTAATTAG+CGG 0.527728 4_4:+47921144 Msa0684530:exon
CAAGAATCTGTGGTTTATGG+TGG 0.532165 4_4:+47920253 Msa0684530:CDS
GGCCGTGAAGCGGATTCTTG+TGG 0.532962 4_4:+47919935 Msa0684530:CDS
AGATTGCACATGTTCGTTGT+GGG 0.533094 4_4:+47921474 Msa0684530:three_prime_UTR
TTTGCAGGTGGAGAAGATTG+AGG 0.547084 4_4:+47920646 Msa0684530:intron
GTTTCCCTAAATCTTGCATG+AGG 0.549833 4_4:-47915798 None:intergenic
ATTATGATATTTAATACACT+TGG 0.549941 4_4:+47921686 Msa0684530:three_prime_UTR
AAAGCCATTAAGGTTATCCA+AGG 0.556662 4_4:+47919121 Msa0684530:CDS
GTGGATTTGGCATGTACCAT+GGG 0.562857 4_4:+47920932 Msa0684530:CDS
CTTCCACCTACTCCTCCAAA+TGG 0.564341 4_4:-47920910 None:intergenic
GACCCCTGTAACACTGGAGT+TGG 0.566126 4_4:+47919453 Msa0684530:CDS
CCAAAATATTAATTCCAAAG+AGG 0.566584 4_4:+47915622 None:intergenic
AAATAAGTTTCAACTACTTG+AGG 0.566706 4_4:+47921047 Msa0684530:CDS
GTGAATACATAAAGGGCAAG+AGG 0.567789 4_4:-47920701 None:intergenic
GGCTTTATTGTCCAAGTAAG+CGG 0.568727 4_4:-47919104 None:intergenic
GTATTGAATTCATAAGCTCT+AGG 0.568775 4_4:+47920672 Msa0684530:CDS
CAGTAATAATTGGAAGTAGT+GGG 0.569529 4_4:-47920456 None:intergenic
CTACCATTTGGAGGAGTAGG+TGG 0.572073 4_4:+47920907 Msa0684530:CDS
GAGATTGCACATGTTCGTTG+TGG 0.572816 4_4:+47921473 Msa0684530:three_prime_UTR
GCAAGTAGAGAGGAACATGC+AGG 0.574415 4_4:-47919070 None:intergenic
AAAGAAAACTAATCATTGAT+CGG 0.576899 4_4:-47921372 None:intergenic
GCAGATAGTCTACCATTTGG+AGG 0.579701 4_4:+47920898 Msa0684530:CDS
AGATTGGATGTCAAGCAAGA+AGG 0.596883 4_4:+47918536 Msa0684530:CDS
AATATCAGGTAGTGCACGAG+TGG 0.599899 4_4:+47919396 Msa0684530:intron
CATTATTGCTGCATCAAGTG+GGG 0.601518 4_4:-47920416 None:intergenic
AGGGTTGCGTCGTTTCCTAG+TGG 0.601929 4_4:+47915750 Msa0684530:CDS
AACTTATTCTAAACAAAACA+AGG 0.604597 4_4:+47921742 Msa0684530:three_prime_UTR
ATTATAAGGTGGCCGTGAAG+CGG 0.604767 4_4:+47919925 Msa0684530:intron
TCAAAAGGTTCAAGAATCTG+TGG 0.607172 4_4:+47920243 Msa0684530:CDS
AATTCCAAGATGAAATAATG+AGG 0.613776 4_4:-47918749 None:intergenic
AAGCCATTAAGGTTATCCAA+GGG 0.614555 4_4:+47919122 Msa0684530:CDS
AGGTGGAATTGATGAAGGTG+TGG 0.618298 4_4:+47920122 Msa0684530:intron
CACCCGCTAATTAACTAACA+AGG 0.618800 4_4:-47921147 None:intergenic
CCTGTAACACTGGAGTTGGG+TGG 0.622351 4_4:+47919457 Msa0684530:CDS
ATATCAGGTAGTGCACGAGT+GGG 0.622510 4_4:+47919397 Msa0684530:intron
AACATTCCAACACTATAGCA+AGG 0.624404 4_4:+47920173 Msa0684530:CDS
AACTTATTTGCAGTCCATGG+TGG 0.626124 4_4:-47921033 None:intergenic
TTTCCCTAAATCTTGCATGA+GGG 0.634134 4_4:-47915797 None:intergenic
AATAATTGGTCGGATTCCTG+TGG 0.634417 4_4:-47919148 None:intergenic
GCAGCTATAGCTCCTATCAG+TGG 0.636960 4_4:-47919010 None:intergenic
AGTGGATTTGGCATGTACCA+TGG 0.640616 4_4:+47920931 Msa0684530:CDS
AAAGTGAGTCCACAACTGCA+GGG 0.644119 4_4:-47919486 None:intergenic
CATGCAGGAGACAACTCTGA+AGG 0.651380 4_4:-47919055 None:intergenic
ATAATGAGGACGAGACCCAA+AGG 0.652554 4_4:-47918735 None:intergenic
ATTATTGCTGCATCAAGTGG+GGG 0.663599 4_4:-47920415 None:intergenic
AATGCCAGAAGCAAGTAGAG+AGG 0.669071 4_4:-47919080 None:intergenic
TTTGGTATAGATATCCACCA+TGG 0.672421 4_4:+47921019 Msa0684530:CDS
TATCAGGTAGTGCACGAGTG+GGG 0.672922 4_4:+47919398 Msa0684530:intron
CGTCTCTAAAAGCTTCAAGA+CGG 0.673616 4_4:-47915822 None:intergenic
ACCCAACTCCAGTGTTACAG+GGG 0.674549 4_4:-47919455 None:intergenic
GCCATTAAGGTTATCCAAGG+GGG 0.676497 4_4:+47919124 Msa0684530:CDS
AGCCATTAAGGTTATCCAAG+GGG 0.684321 4_4:+47919123 Msa0684530:CDS
TGTCAAAAGAGAATTTCCCA+TGG 0.691233 4_4:-47920948 None:intergenic
TCTTTAATCCAAGAATAACA+AGG 0.695515 4_4:-47921101 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTATTTTTATA+AGG + chr4_4:47920102-47920121 Msa0684530:intron 0.0%
!! AAAAAAGATATATAATAACA+TGG + chr4_4:47916031-47916050 Msa0684530:intron 10.0%
!! AAAAAGATATATAATAACAT+GGG + chr4_4:47916032-47916051 Msa0684530:intron 10.0%
!! TTAAAAAAATTAATAACTTG+GGG - chr4_4:47916588-47916607 None:intergenic 10.0%
!! CTTAAAAAAATTAATAACTT+GGG - chr4_4:47916589-47916608 None:intergenic 10.0%
!! ACTTAAAAAAATTAATAACT+TGG - chr4_4:47916590-47916609 None:intergenic 10.0%
!!! TTTTTTTTTTTTACAACTTT+TGG + chr4_4:47916985-47917004 Msa0684530:intron 10.0%
!!! TTTTTTTTTTTACAACTTTT+GGG + chr4_4:47916986-47917005 Msa0684530:intron 10.0%
!!! TAAACTATATCTTTTTTTTT+TGG - chr4_4:47917706-47917725 None:intergenic 10.0%
!!! AAGTTAATCATTTTTTTTTA+AGG + chr4_4:47917785-47917804 Msa0684530:intron 10.0%
!! TAAAATTTAGTAATAAATGT+TGG + chr4_4:47917900-47917919 Msa0684530:intron 10.0%
!!! TGAATATTGTTTATTTTTTT+TGG - chr4_4:47917994-47918013 None:intergenic 10.0%
!!! TTTATTTTATTTTTATAAGG+TGG + chr4_4:47920105-47920124 Msa0684530:intron 10.0%
!! ATTTGAACATTAATATAAAT+TGG - chr4_4:47920838-47920857 None:intergenic 10.0%
!! TCTTATAATTATGATTATTT+GGG + chr4_4:47921072-47921091 Msa0684530:CDS 10.0%
!!! TTTTTTTTATAGAATGATGA+AGG - chr4_4:47916061-47916080 None:intergenic 15.0%
!! TTCAAAATTGATATCAATTA+TGG - chr4_4:47916264-47916283 None:intergenic 15.0%
!!! ATTTCTCAAATTTTATTTGT+GGG - chr4_4:47916950-47916969 None:intergenic 15.0%
!!! TTCTATAAAATTGTTTTGTT+TGG - chr4_4:47917491-47917510 None:intergenic 15.0%
!! ATATATCTCCTAAAAATAAA+CGG + chr4_4:47917750-47917769 Msa0684530:intron 15.0%
!!! TGAATATTGTTTATTTTTTG+TGG - chr4_4:47918022-47918041 None:intergenic 15.0%
!! TATGATTATATTCATATATC+TGG + chr4_4:47918260-47918279 Msa0684530:intron 15.0%
!! TAGAAATTATTATGACAATT+TGG - chr4_4:47918591-47918610 None:intergenic 15.0%
!! GAAATAATTTACTTTGATAT+AGG + chr4_4:47918662-47918681 Msa0684530:intron 15.0%
!!! TTTTTGTTGTTTTTTGTAAT+AGG - chr4_4:47920342-47920361 None:intergenic 15.0%
!! CTCTTATAATTATGATTATT+TGG + chr4_4:47921071-47921090 Msa0684530:CDS 15.0%
!! ATTATGATATTTAATACACT+TGG + chr4_4:47921686-47921705 Msa0684530:three_prime_UTR 15.0%
!!! AGAATATGAGAGAATATTTT+AGG + chr4_4:47915683-47915702 Msa0684530:CDS 20.0%
!!! TGCATTTTTTTTTGTTTGTT+AGG + chr4_4:47915914-47915933 Msa0684530:intron 20.0%
!! ATAGTGTTCCATATAATATA+TGG + chr4_4:47916159-47916178 Msa0684530:intron 20.0%
!! AATTAAGACATAGACTTAAT+TGG - chr4_4:47916363-47916382 None:intergenic 20.0%
!! TAAGTCTATGTCTTAATTTA+AGG + chr4_4:47916365-47916384 Msa0684530:intron 20.0%
!! GAAAATTTAAACATTACCTA+TGG - chr4_4:47916795-47916814 None:intergenic 20.0%
!! TTTACGAAATAAAGTTTATG+TGG + chr4_4:47916894-47916913 Msa0684530:intron 20.0%
!!! TTTCTCAAATTTTATTTGTG+GGG - chr4_4:47916949-47916968 None:intergenic 20.0%
!!! CATTTCTCAAATTTTATTTG+TGG - chr4_4:47916951-47916970 None:intergenic 20.0%
!!! AAAAGTTGTTTTTTTTGACA+AGG + chr4_4:47917404-47917423 Msa0684530:intron 20.0%
!!! ATGGTTTAATTTATAACATG+AGG - chr4_4:47917464-47917483 None:intergenic 20.0%
!! GTATATCTCCTAAAAATAAA+CGG + chr4_4:47917549-47917568 Msa0684530:intron 20.0%
!!! ACTAAATACCGTTTATTTTT+AGG - chr4_4:47917560-47917579 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+TGG + chr4_4:47917559-47917578 Msa0684530:intron 20.0%
!!! AAAGTTGAATCATTTTTTCA+AGG + chr4_4:47917583-47917602 Msa0684530:intron 20.0%
!!! TATATCTTTTTTTTTTGGTC+AGG - chr4_4:47917701-47917720 None:intergenic 20.0%
!!! TCTAAATACCGTTTATTTTT+AGG - chr4_4:47917761-47917780 None:intergenic 20.0%
!! TAAAAATAAACGGTATTTAG+AGG + chr4_4:47917559-47917578 Msa0684530:intron 20.0%
!! ATTTGATAGAGTATATCTTT+AGG + chr4_4:47918041-47918060 Msa0684530:intron 20.0%
!!! ATTTTTTGTCAAGTAATCTA+GGG - chr4_4:47918126-47918145 None:intergenic 20.0%
!! TATATAATTAACTCACCAAA+GGG - chr4_4:47918777-47918796 None:intergenic 20.0%
!! AGAAACGGAAAAAATAAATT+TGG - chr4_4:47918896-47918915 None:intergenic 20.0%
!! ATAACGAAGAAAATTAGAAA+CGG - chr4_4:47918911-47918930 None:intergenic 20.0%
!!! ATTTTCTTCGTTATTTTGTT+AGG + chr4_4:47918917-47918936 Msa0684530:intron 20.0%
!!! TTTTCTTCGTTATTTTGTTA+GGG + chr4_4:47918918-47918937 Msa0684530:intron 20.0%
!! TTAAATTGCAGATACAATAA+CGG + chr4_4:47919255-47919274 Msa0684530:intron 20.0%
!! TACTAATTTAGAAACCTAAA+GGG - chr4_4:47919687-47919706 None:intergenic 20.0%
!! ATACTAATTTAGAAACCTAA+AGG - chr4_4:47919688-47919707 None:intergenic 20.0%
!! AAATATATAGTAAAACGTGA+TGG - chr4_4:47919717-47919736 None:intergenic 20.0%
!! TTTCTTTATCCAATGAATTA+AGG - chr4_4:47919855-47919874 None:intergenic 20.0%
!!! GTTTTTTGTAATAGGAATTT+AGG - chr4_4:47920334-47920353 None:intergenic 20.0%
!!! ATAATGTTAGATGAAGTTTT+TGG + chr4_4:47920433-47920452 Msa0684530:CDS 20.0%
!! ATGAAACTTACAGTAATAAT+TGG - chr4_4:47920469-47920488 None:intergenic 20.0%
!!! TTTTTTGCATAATAATTTGC+AGG + chr4_4:47920631-47920650 Msa0684530:intron 20.0%
!!! TAATTATGATTATTTGGGAT+TGG + chr4_4:47921077-47921096 Msa0684530:CDS 20.0%
!!! TATATAGGTTGATATGTTTT+CGG + chr4_4:47921228-47921247 Msa0684530:three_prime_UTR 20.0%
!! AAAGAAAACTAATCATTGAT+CGG - chr4_4:47921375-47921394 None:intergenic 20.0%
!! AGTAGAAAAATCATATATCA+AGG - chr4_4:47921722-47921741 None:intergenic 20.0%
!! AACTTATTCTAAACAAAACA+AGG + chr4_4:47921742-47921761 Msa0684530:three_prime_UTR 20.0%
!!! CAAAGAGGTATCAAAATAAT+GGG + chr4_4:47915637-47915656 Msa0684530:exon 25.0%
!! TATCAAAATAATGGGAACTT+TGG + chr4_4:47915645-47915664 Msa0684530:exon 25.0%
! AAAAGAGAATGATATCTTCA+TGG + chr4_4:47915774-47915793 Msa0684530:CDS 25.0%
! ACAAAAAAAAATGCATTCCT+TGG - chr4_4:47915909-47915928 None:intergenic 25.0%
! AAAGACATTCATAAAGTAAC+CGG + chr4_4:47916078-47916097 Msa0684530:intron 25.0%
!!! TGAGAATACAGTGTTATTTA+AGG + chr4_4:47916132-47916151 Msa0684530:intron 25.0%
!! GCATTGATCCATATATTATA+TGG - chr4_4:47916170-47916189 None:intergenic 25.0%
! ATATCAATTATGGTCTCATA+TGG - chr4_4:47916254-47916273 None:intergenic 25.0%
!!! TTCTCAAATTTTATTTGTGG+GGG - chr4_4:47916948-47916967 None:intergenic 25.0%
! TCTATCTATCTATCTATCTA+TGG + chr4_4:47917129-47917148 Msa0684530:intron 25.0%
! CTATCTATCTATCTATCTAT+GGG + chr4_4:47917130-47917149 Msa0684530:intron 25.0%
!!! AATTGTTTTGTTTGGTTGTA+TGG - chr4_4:47917483-47917502 None:intergenic 25.0%
!!! TTTTGTTTGGTTGTATTGTA+TGG - chr4_4:47917651-47917670 None:intergenic 25.0%
!!! TCTACTAAAATCGTTTTGTT+TGG - chr4_4:47917664-47917683 None:intergenic 25.0%
!! TATGCTTTTACATTGTTTGT+AGG - chr4_4:47917959-47917978 None:intergenic 25.0%
!!! TTTTTTGTCAAGTAATCTAG+GGG - chr4_4:47918125-47918144 None:intergenic 25.0%
!!! CATTTTTTGTCAAGTAATCT+AGG - chr4_4:47918127-47918146 None:intergenic 25.0%
!! TCATATATCTGGAATAATCA+TGG + chr4_4:47918271-47918290 Msa0684530:intron 25.0%
! ACACTTTAATGCAAGATTTA+AGG - chr4_4:47918511-47918530 None:intergenic 25.0%
!! ATGACAATTTGGTATTTTGT+AGG - chr4_4:47918580-47918599 None:intergenic 25.0%
! AATTCCAAGATGAAATAATG+AGG - chr4_4:47918752-47918771 None:intergenic 25.0%
! GTATATAATTAACTCACCAA+AGG - chr4_4:47918778-47918797 None:intergenic 25.0%
!! TACTTGAATGAATGTGATTT+TGG - chr4_4:47918822-47918841 None:intergenic 25.0%
! ATTCAAGTACTAGAAAAAGT+TGG + chr4_4:47918833-47918852 Msa0684530:intron 25.0%
! CAATGACAAAAATTTAGAGA+TGG + chr4_4:47918858-47918877 Msa0684530:intron 25.0%
! TGTAACCAATAAAAAAACAC+AGG + chr4_4:47918974-47918993 Msa0684530:intron 25.0%
!!! ACAATCCTGTGTTTTTTTAT+TGG - chr4_4:47918982-47919001 None:intergenic 25.0%
!!! TTTTTGCTGTAATAATTGGT+CGG - chr4_4:47919161-47919180 None:intergenic 25.0%
! ACCAATTATTACAGCAAAAA+TGG + chr4_4:47919161-47919180 Msa0684530:CDS 25.0%
! CCAATTATTACAGCAAAAAT+GGG + chr4_4:47919162-47919181 Msa0684530:CDS 25.0%
!! AGTCGTGATGAAAAATATTT+TGG - chr4_4:47919216-47919235 None:intergenic 25.0%
!! TATTTTTCATCACGACTTTT+AGG + chr4_4:47919219-47919238 Msa0684530:intron 25.0%
!!! CATAACCAGGTTTTAAATAA+AGG - chr4_4:47919329-47919348 None:intergenic 25.0%
! TCCTTGTAAAAACTAATATC+AGG + chr4_4:47919382-47919401 Msa0684530:intron 25.0%
!!! ACCTGATATTAGTTTTTACA+AGG - chr4_4:47919386-47919405 None:intergenic 25.0%
! TGTTATTATTATCATGGATC+GGG - chr4_4:47919572-47919591 None:intergenic 25.0%
!! GTGTTATTATTATCATGGAT+CGG - chr4_4:47919573-47919592 None:intergenic 25.0%
! AATGGCATGACATATAATAA+AGG - chr4_4:47919748-47919767 None:intergenic 25.0%
! TATCCAATGAATTAAGGTAA+TGG - chr4_4:47919849-47919868 None:intergenic 25.0%
! TCTCTTAAATTCAAGTATTC+AGG + chr4_4:47920043-47920062 Msa0684530:intron 25.0%
!!! ATATTAGTTTGTGAAAGGAA+GGG - chr4_4:47920310-47920329 None:intergenic 25.0%
!!! AATATTAGTTTGTGAAAGGA+AGG - chr4_4:47920311-47920330 None:intergenic 25.0%
!!! TAGGAATATTAGTTTGTGAA+AGG - chr4_4:47920315-47920334 None:intergenic 25.0%
!! ATTTATTGAGCCAACAATTT+TGG + chr4_4:47920387-47920406 Msa0684530:CDS 25.0%
!! TATTTTACAAATGTCTGGTA+TGG + chr4_4:47920517-47920536 Msa0684530:intron 25.0%
! AAATGATAGATATAAGCATG+TGG - chr4_4:47920584-47920603 None:intergenic 25.0%
!!! GTTTTTGGTGAATACATAAA+GGG - chr4_4:47920711-47920730 None:intergenic 25.0%
!!! TTCTTCTAACAATTGCTTTT+TGG - chr4_4:47920984-47921003 None:intergenic 25.0%
!!! GAAGTTTCTTAACTGATTTT+TGG + chr4_4:47921001-47921020 Msa0684530:CDS 25.0%
! AAATAAGTTTCAACTACTTG+AGG + chr4_4:47921047-47921066 Msa0684530:CDS 25.0%
! TCTTTAATCCAAGAATAACA+AGG - chr4_4:47921104-47921123 None:intergenic 25.0%
! TGAGATAAAAAACAATTGCA+AGG + chr4_4:47921431-47921450 Msa0684530:three_prime_UTR 25.0%
!!! CCATTATTTTGATACCTCTT+TGG - chr4_4:47915639-47915658 None:intergenic 30.0%
!! CCAAAGAGGTATCAAAATAA+TGG + chr4_4:47915636-47915655 Msa0684530:exon 30.0%
!! ATGAGAGAATATTTTAGGAG+TGG + chr4_4:47915688-47915707 Msa0684530:CDS 30.0%
!! GAAAAACAAAAGAAGCATCT+TGG + chr4_4:47915710-47915729 Msa0684530:CDS 30.0%
! TATCATTCTCTTTTTCCACT+AGG - chr4_4:47915768-47915787 None:intergenic 30.0%
! TAGACATATTTTCCAATCCA+AGG + chr4_4:47915889-47915908 Msa0684530:intron 30.0%
AAAAAATGCATTCCTTGGAT+TGG - chr4_4:47915904-47915923 None:intergenic 30.0%
TAATGTGTGTACGAATCATT+TGG - chr4_4:47915947-47915966 None:intergenic 30.0%
ATGATTCGTACACACATTAA+TGG + chr4_4:47915948-47915967 Msa0684530:intron 30.0%
ACAAAACTATCTCGTTAGTT+AGG + chr4_4:47915980-47915999 Msa0684530:intron 30.0%
GTATTCTCATCTATAGATGA+AGG - chr4_4:47916121-47916140 None:intergenic 30.0%
TATGGATCAATGCTTGAAAA+TGG + chr4_4:47916177-47916196 Msa0684530:intron 30.0%
! ACTCATGAATTGAACTTGTT+GGG + chr4_4:47916400-47916419 Msa0684530:intron 30.0%
!!! TTTGAACGATTTTGAAGCAT+TGG + chr4_4:47916437-47916456 Msa0684530:intron 30.0%
TCTAGCATTTACACAAGAAT+AGG + chr4_4:47916489-47916508 Msa0684530:intron 30.0%
TCTATTCAAGCAAAGTTATG+CGG - chr4_4:47916522-47916541 None:intergenic 30.0%
! ACTGAAAAAGTTTAAAGCCT+TGG + chr4_4:47916551-47916570 Msa0684530:intron 30.0%
! TATTTGCAGTCTTTTACCAT+AGG + chr4_4:47916776-47916795 Msa0684530:intron 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr4_4:47917208-47917227 None:intergenic 30.0%
CTAAAAGACACCTTCATAAA+AGG + chr4_4:47917243-47917262 Msa0684530:intron 30.0%
! TTTTTGTCTGATAACAAGAG+TGG + chr4_4:47917366-47917385 Msa0684530:intron 30.0%
! TAGAGTATATCTTTAGGAGT+TGG + chr4_4:47918047-47918066 Msa0684530:intron 30.0%
! AGAGTATATCTTTAGGAGTT+GGG + chr4_4:47918048-47918067 Msa0684530:intron 30.0%
TGAATAAGTGGAGAAATATG+GGG - chr4_4:47918081-47918100 None:intergenic 30.0%
GTGAATAAGTGGAGAAATAT+GGG - chr4_4:47918082-47918101 None:intergenic 30.0%
TGTGAATAAGTGGAGAAATA+TGG - chr4_4:47918083-47918102 None:intergenic 30.0%
TACCTTTGAATGTGAATAAG+TGG - chr4_4:47918093-47918112 None:intergenic 30.0%
!! TTTGCTTTTCCGTCTTATAA+CGG - chr4_4:47918385-47918404 None:intergenic 30.0%
TACTAAATCCATTCTCAGAT+AGG + chr4_4:47918471-47918490 Msa0684530:intron 30.0%
! CATTAAAGTGTCTGAAAGAT+TGG + chr4_4:47918520-47918539 Msa0684530:CDS 30.0%
AAAAAACACAGGATTGTCTT+TGG + chr4_4:47918985-47919004 Msa0684530:intron 30.0%
!! CCCATTTTTGCTGTAATAAT+TGG - chr4_4:47919165-47919184 None:intergenic 30.0%
AGGGTTTCATAAGATTACAA+TGG - chr4_4:47919766-47919785 None:intergenic 30.0%
AATAACACAACAAAAGTGAC+GGG - chr4_4:47919790-47919809 None:intergenic 30.0%
GAATAACACAACAAAAGTGA+CGG - chr4_4:47919791-47919810 None:intergenic 30.0%
CATCCATTACCTTAATTCAT+TGG + chr4_4:47919843-47919862 Msa0684530:intron 30.0%
ATTATCAATGCAACACTTTC+TGG + chr4_4:47919900-47919919 Msa0684530:intron 30.0%
! AACACTTTCTGGTGATTATA+AGG + chr4_4:47919911-47919930 Msa0684530:intron 30.0%
! AAAGAGTTGCTGTTCAAAAT+TGG + chr4_4:47920016-47920035 Msa0684530:CDS 30.0%
TTATAAGGTGGAATTGATGA+AGG + chr4_4:47920117-47920136 Msa0684530:intron 30.0%
! GAAACTTCTTGATGATCAAA+AGG + chr4_4:47920228-47920247 Msa0684530:CDS 30.0%
CAGTAATAATTGGAAGTAGT+GGG - chr4_4:47920459-47920478 None:intergenic 30.0%
ACAGTAATAATTGGAAGTAG+TGG - chr4_4:47920460-47920479 None:intergenic 30.0%
! CTGACTATTTTACAAATGTC+TGG + chr4_4:47920512-47920531 Msa0684530:intron 30.0%
! TTTGCATAATAATTTGCAGG+TGG + chr4_4:47920634-47920653 Msa0684530:intron 30.0%
GTATTGAATTCATAAGCTCT+AGG + chr4_4:47920672-47920691 Msa0684530:CDS 30.0%
!!! GGTTTTTGGTGAATACATAA+AGG - chr4_4:47920712-47920731 None:intergenic 30.0%
! ATGATATCTGAAACATCATC+TGG + chr4_4:47920749-47920768 Msa0684530:CDS 30.0%
! TTGCCTTGTTAGTTAATTAG+CGG + chr4_4:47921144-47921163 Msa0684530:exon 30.0%
TGAGTTTGCAACTCTTATAT+AGG + chr4_4:47921213-47921232 Msa0684530:three_prime_UTR 30.0%
! AAATAGAGGCTTTGTACATT+AGG - chr4_4:47921347-47921366 None:intergenic 30.0%
! CTTATCCTCAATTTTCTCAA+AGG + chr4_4:47921403-47921422 Msa0684530:three_prime_UTR 30.0%
TGGAGAGAATCACAACTAAA+AGG + chr4_4:47915730-47915749 Msa0684530:CDS 35.0%
GGAGAGAATCACAACTAAAA+GGG + chr4_4:47915731-47915750 Msa0684530:CDS 35.0%
TTTCCCTAAATCTTGCATGA+GGG - chr4_4:47915800-47915819 None:intergenic 35.0%
GACTCATGAATTGAACTTGT+TGG + chr4_4:47916399-47916418 Msa0684530:intron 35.0%
CTAGATGAAAAAGTCTCATG+TGG - chr4_4:47916474-47916493 None:intergenic 35.0%
CATTTACACAAGAATAGGCT+AGG + chr4_4:47916494-47916513 Msa0684530:intron 35.0%
CTATTCAAGCAAAGTTATGC+GGG - chr4_4:47916521-47916540 None:intergenic 35.0%
AATAACTTGGGGATAAGCAA+AGG - chr4_4:47916577-47916596 None:intergenic 35.0%
TTGCTAAAAGACACCTTCAT+GGG - chr4_4:47917240-47917259 None:intergenic 35.0%
ATTGCTAAAAGACACCTTCA+TGG - chr4_4:47917180-47917199 None:intergenic 35.0%
! TTTTAGCAATCCACACCTTA+AGG + chr4_4:47917190-47917209 Msa0684530:intron 35.0%
! CTAGAAGACACCTTTTATGA+AGG - chr4_4:47917256-47917275 None:intergenic 35.0%
! GAGTATATCTTTAGGAGTTG+GGG + chr4_4:47918049-47918068 Msa0684530:intron 35.0%
CTCCACTTATTCACATTCAA+AGG + chr4_4:47918088-47918107 Msa0684530:intron 35.0%
GAACAAACACCGTTATAAGA+CGG + chr4_4:47918373-47918392 Msa0684530:intron 35.0%
! GTAACTTTTGTTCGTTGTTG+TGG - chr4_4:47918419-47918438 None:intergenic 35.0%
AGAAATTGTTCATGAGCCTT+TGG + chr4_4:47918719-47918738 Msa0684530:CDS 35.0%
GAAATTGTTCATGAGCCTTT+GGG + chr4_4:47918720-47918739 Msa0684530:CDS 35.0%
TCGTCCTCATTATTTCATCT+TGG + chr4_4:47918745-47918764 Msa0684530:CDS 35.0%
TCATCTTGGAATTTACCCTT+TGG + chr4_4:47918759-47918778 Msa0684530:CDS 35.0%
TGTTAGGGTCTTGATAAGTT+TGG + chr4_4:47918933-47918952 Msa0684530:intron 35.0%
GTTAGGGTCTTGATAAGTTT+GGG + chr4_4:47918934-47918953 Msa0684530:intron 35.0%
CTTGGACAATAAAGCCATTA+AGG + chr4_4:47919111-47919130 Msa0684530:CDS 35.0%
AAAGCCATTAAGGTTATCCA+AGG + chr4_4:47919121-47919140 Msa0684530:CDS 35.0%
AAGCCATTAAGGTTATCCAA+GGG + chr4_4:47919122-47919141 Msa0684530:CDS 35.0%
TGGGACAAAATCTTCTTTAC+AGG + chr4_4:47919181-47919200 Msa0684530:CDS 35.0%
!!! ACGACTTTTAGGTTTTGAAC+AGG + chr4_4:47919230-47919249 Msa0684530:intron 35.0%
TTCATCTTCTTGGGATTTAG+AGG + chr4_4:47919507-47919526 Msa0684530:CDS 35.0%
! CGAGCGTGTTATTATTATCA+TGG - chr4_4:47919578-47919597 None:intergenic 35.0%
! ACTTTCTGGTGATTATAAGG+TGG + chr4_4:47919914-47919933 Msa0684530:intron 35.0%
GTGTGGATCAAGAAAATGTT+TGG + chr4_4:47920139-47920158 Msa0684530:CDS 35.0%
! CTATAGTGTTGGAATGTTGT+GGG - chr4_4:47920171-47920190 None:intergenic 35.0%
AACATTCCAACACTATAGCA+AGG + chr4_4:47920173-47920192 Msa0684530:CDS 35.0%
! AACTATCCTTGCTATAGTGT+TGG - chr4_4:47920182-47920201 None:intergenic 35.0%
TCAAAAGGTTCAAGAATCTG+TGG + chr4_4:47920243-47920262 Msa0684530:CDS 35.0%
GTTCAAGAATCTGTGGTTTA+TGG + chr4_4:47920250-47920269 Msa0684530:CDS 35.0%
! TATTGAGCCAACAATTTTGG+TGG + chr4_4:47920390-47920409 Msa0684530:CDS 35.0%
ACATTATTGCTGCATCAAGT+GGG - chr4_4:47920420-47920439 None:intergenic 35.0%
AACATTATTGCTGCATCAAG+TGG - chr4_4:47920421-47920440 None:intergenic 35.0%
!!! GTTCTGCAATGTTTGGTTTT+TGG - chr4_4:47920726-47920745 None:intergenic 35.0%
TCATTCTGTTCTGCAATGTT+TGG - chr4_4:47920733-47920752 None:intergenic 35.0%
TGTCAAAAGAGAATTTCCCA+TGG - chr4_4:47920951-47920970 None:intergenic 35.0%
TTTGGTATAGATATCCACCA+TGG + chr4_4:47921019-47921038 Msa0684530:CDS 35.0%
TGAAACTTATTTGCAGTCCA+TGG - chr4_4:47921039-47921058 None:intergenic 35.0%
TTAACTAACAAGGCAAGATC+TGG - chr4_4:47921140-47921159 None:intergenic 35.0%
! TGCCTTGTTAGTTAATTAGC+GGG + chr4_4:47921145-47921164 Msa0684530:exon 35.0%
!! ATTGATCGGTTCGAAAATAG+AGG - chr4_4:47921361-47921380 None:intergenic 35.0%
! CTTCTCCTTTGAGAAAATTG+AGG - chr4_4:47921411-47921430 None:intergenic 35.0%
GTTTCCCTAAATCTTGCATG+AGG - chr4_4:47915801-47915820 None:intergenic 40.0%
! CGTCTCTAAAAGCTTCAAGA+CGG - chr4_4:47915825-47915844 None:intergenic 40.0%
!! TCTTGAAGCTTTTAGAGACG+AGG + chr4_4:47915825-47915844 Msa0684530:CDS 40.0%
GGTGCACAACTTCTTATTAC+CGG - chr4_4:47916100-47916119 None:intergenic 40.0%
CTCAGTCATTTAGTGTGTGT+GGG - chr4_4:47916698-47916717 None:intergenic 40.0%
TCTCAGTCATTTAGTGTGTG+TGG - chr4_4:47916699-47916718 None:intergenic 40.0%
CACTAAATGACTGAGAAGTG+TGG + chr4_4:47916703-47916722 Msa0684530:intron 40.0%
ATGCAACAAATCTTGAAGCG+TGG - chr4_4:47916738-47916757 None:intergenic 40.0%
!! AATTTTATTTGTGGGGGACG+AGG - chr4_4:47916942-47916961 None:intergenic 40.0%
GAAAATCACACCTTAAGGTG+TGG - chr4_4:47917203-47917222 None:intergenic 40.0%
TGTTTGTAGGATCGCTTCAA+TGG - chr4_4:47917946-47917965 None:intergenic 40.0%
CTAACGTTCCTATCTGAGAA+TGG - chr4_4:47918482-47918501 None:intergenic 40.0%
AGATTGGATGTCAAGCAAGA+AGG + chr4_4:47918536-47918555 Msa0684530:CDS 40.0%
CTTGAAAGCAATGCTATTGC+AGG - chr4_4:47918696-47918715 None:intergenic 40.0%
!! GGCTTTATTGTCCAAGTAAG+CGG - chr4_4:47919107-47919126 None:intergenic 40.0%
AGCCATTAAGGTTATCCAAG+GGG + chr4_4:47919123-47919142 Msa0684530:CDS 40.0%
AATAATTGGTCGGATTCCTG+TGG - chr4_4:47919151-47919170 None:intergenic 40.0%
!! GTGACATTCACGTTTTAACG+TGG + chr4_4:47919277-47919296 Msa0684530:intron 40.0%
TCAATCGCAAATTATGGTCG+CGG + chr4_4:47919302-47919321 Msa0684530:intron 40.0%
! GCGGACCTTTATTTAAAACC+TGG + chr4_4:47919321-47919340 Msa0684530:intron 40.0%
TGGACTCACTTTCATCTTCT+TGG + chr4_4:47919497-47919516 Msa0684530:CDS 40.0%
GGACTCACTTTCATCTTCTT+GGG + chr4_4:47919498-47919517 Msa0684530:CDS 40.0%
CGGATTCTTGTGGGAAAATA+TGG + chr4_4:47919945-47919964 Msa0684530:CDS 40.0%
GGAAAATATGGAACTTGTGC+TGG + chr4_4:47919957-47919976 Msa0684530:CDS 40.0%
! GCTATAGTGTTGGAATGTTG+TGG - chr4_4:47920172-47920191 None:intergenic 40.0%
CAAGAATCTGTGGTTTATGG+TGG + chr4_4:47920253-47920272 Msa0684530:CDS 40.0%
ATTATTGCTGCATCAAGTGG+GGG - chr4_4:47920418-47920437 None:intergenic 40.0%
CATTATTGCTGCATCAAGTG+GGG - chr4_4:47920419-47920438 None:intergenic 40.0%
ACATAAAGGGCAAGAGGTTT+AGG - chr4_4:47920698-47920717 None:intergenic 40.0%
GTGAATACATAAAGGGCAAG+AGG - chr4_4:47920704-47920723 None:intergenic 40.0%
AACTTATTTGCAGTCCATGG+TGG - chr4_4:47921036-47921055 None:intergenic 40.0%
!! GGATTGGTCCTTGTTATTCT+TGG + chr4_4:47921093-47921112 Msa0684530:CDS 40.0%
CACCCGCTAATTAACTAACA+AGG - chr4_4:47921150-47921169 None:intergenic 40.0%
GTGCAATCTCACAAATCAGT+TGG - chr4_4:47921463-47921482 None:intergenic 40.0%
AGATTGCACATGTTCGTTGT+GGG + chr4_4:47921474-47921493 Msa0684530:three_prime_UTR 40.0%
ATGGCCCTCATGCAAGATTT+AGG + chr4_4:47915793-47915812 Msa0684530:CDS 45.0%
TGGCCCTCATGCAAGATTTA+GGG + chr4_4:47915794-47915813 Msa0684530:CDS 45.0%
GGTGGATAGTGTGATATTGG+TGG - chr4_4:47916921-47916940 None:intergenic 45.0%
CGAGGTGGATAGTGTGATAT+TGG - chr4_4:47916924-47916943 None:intergenic 45.0%
CTAAAAGACACCTTCATGGG+TGG - chr4_4:47917176-47917195 None:intergenic 45.0%
TGTCGTCAACGTTGCAAATC+TGG - chr4_4:47918299-47918318 None:intergenic 45.0%
AGCAATGCTATTGCAGGTAG+TGG - chr4_4:47918690-47918709 None:intergenic 45.0%
ATAATGAGGACGAGACCCAA+AGG - chr4_4:47918738-47918757 None:intergenic 45.0%
!! TTGTCTTTGGAGCCACTGAT+AGG + chr4_4:47918998-47919017 Msa0684530:CDS 45.0%
TGTTCCTCTCTACTTGCTTC+TGG + chr4_4:47919076-47919095 Msa0684530:CDS 45.0%
AATGCCAGAAGCAAGTAGAG+AGG - chr4_4:47919083-47919102 None:intergenic 45.0%
TTCTGGCATTACCGCTTACT+TGG + chr4_4:47919093-47919112 Msa0684530:CDS 45.0%
GCCATTAAGGTTATCCAAGG+GGG + chr4_4:47919124-47919143 Msa0684530:CDS 45.0%
TCCCCCTTGGATAACCTTAA+TGG - chr4_4:47919128-47919147 None:intergenic 45.0%
GTGGCCTCAATCGCAAATTA+TGG + chr4_4:47919296-47919315 Msa0684530:intron 45.0%
! GCGACCATAATTTGCGATTG+AGG - chr4_4:47919303-47919322 None:intergenic 45.0%
GTGACAAGAGACTCATAACC+AGG - chr4_4:47919342-47919361 None:intergenic 45.0%
AATATCAGGTAGTGCACGAG+TGG + chr4_4:47919396-47919415 Msa0684530:intron 45.0%
ATATCAGGTAGTGCACGAGT+GGG + chr4_4:47919397-47919416 Msa0684530:intron 45.0%
AAAGTGAGTCCACAACTGCA+GGG - chr4_4:47919489-47919508 None:intergenic 45.0%
AATAATAACACGCTCGAGCG+TGG + chr4_4:47919582-47919601 Msa0684530:intron 45.0%
! CGCAAGAGCATACACTTCAA+GGG + chr4_4:47919612-47919631 Msa0684530:intron 45.0%
!! CACAACAAAAGTGACGGGTA+GGG - chr4_4:47919785-47919804 None:intergenic 45.0%
!! ACACAACAAAAGTGACGGGT+AGG - chr4_4:47919786-47919805 None:intergenic 45.0%
ATTATAAGGTGGCCGTGAAG+CGG + chr4_4:47919925-47919944 Msa0684530:intron 45.0%
AGGTGGAATTGATGAAGGTG+TGG + chr4_4:47920122-47920141 Msa0684530:intron 45.0%
TTTGCAGGTGGAGAAGATTG+AGG + chr4_4:47920646-47920665 Msa0684530:intron 45.0%
GCAGCAGATAGTCTACCATT+TGG + chr4_4:47920895-47920914 Msa0684530:CDS 45.0%
GCAGATAGTCTACCATTTGG+AGG + chr4_4:47920898-47920917 Msa0684530:CDS 45.0%
AGTCTACCATTTGGAGGAGT+AGG + chr4_4:47920904-47920923 Msa0684530:CDS 45.0%
! AGTGGATTTGGCATGTACCA+TGG + chr4_4:47920931-47920950 Msa0684530:CDS 45.0%
GTGGATTTGGCATGTACCAT+GGG + chr4_4:47920932-47920951 Msa0684530:CDS 45.0%
GAGATTGCACATGTTCGTTG+TGG + chr4_4:47921473-47921492 Msa0684530:three_prime_UTR 45.0%
!!! ATTATATATCTTTTTTTTTT+TGG - chr4_4:47916027-47916046 None:intergenic 5.0%
!!! TTTTTTAAGTTTTTTATTTT+TGG + chr4_4:47916600-47916619 Msa0684530:intron 5.0%
!!! AATTTTTATTTAATATTACT+CGG - chr4_4:47916856-47916875 None:intergenic 5.0%
!! TAAAATTTCTTATTATATAA+AGG - chr4_4:47921303-47921322 None:intergenic 5.0%
TTGGGGATAAGCAAAGGCCA+AGG - chr4_4:47916571-47916590 None:intergenic 50.0%
TTTATTTGTGGGGGACGAGG+TGG - chr4_4:47916939-47916958 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - chr4_4:47917017-47917036 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_4:47917016-47917035 None:intergenic 50.0%
TTGCTAGAAGCCACCCATGA+AGG + chr4_4:47917163-47917182 Msa0684530:intron 50.0%
GCAGCTATAGCTCCTATCAG+TGG - chr4_4:47919013-47919032 None:intergenic 50.0%
CTGATAGGAGCTATAGCTGC+TGG + chr4_4:47919013-47919032 Msa0684530:CDS 50.0%
CATGCAGGAGACAACTCTGA+AGG - chr4_4:47919058-47919077 None:intergenic 50.0%
GCAAGTAGAGAGGAACATGC+AGG - chr4_4:47919073-47919092 None:intergenic 50.0%
TATCAGGTAGTGCACGAGTG+GGG + chr4_4:47919398-47919417 Msa0684530:intron 50.0%
ACCCCTGTAACACTGGAGTT+GGG + chr4_4:47919454-47919473 Msa0684530:CDS 50.0%
ACCCAACTCCAGTGTTACAG+GGG - chr4_4:47919458-47919477 None:intergenic 50.0%
CACCCAACTCCAGTGTTACA+GGG - chr4_4:47919459-47919478 None:intergenic 50.0%
TGGAAAATGCCCTGCAGTTG+TGG + chr4_4:47919477-47919496 Msa0684530:CDS 50.0%
GAAAGTGAGTCCACAACTGC+AGG - chr4_4:47919490-47919509 None:intergenic 50.0%
! GCGCAAGAGCATACACTTCA+AGG + chr4_4:47919611-47919630 Msa0684530:intron 50.0%
GCTCTGATGTTGAGCCCTTT+AGG + chr4_4:47919670-47919689 Msa0684530:intron 50.0%
TCCCACAAGAATCCGCTTCA+CGG - chr4_4:47919940-47919959 None:intergenic 50.0%
GGGGGATCCACCAAAATTGT+TGG - chr4_4:47920400-47920419 None:intergenic 50.0%
CTACCATTTGGAGGAGTAGG+TGG + chr4_4:47920907-47920926 Msa0684530:CDS 50.0%
CTTCCACCTACTCCTCCAAA+TGG - chr4_4:47920913-47920932 None:intergenic 50.0%
TTTGGAGGAGTAGGTGGAAG+TGG + chr4_4:47920913-47920932 Msa0684530:CDS 50.0%
! GGAGTAGGTGGAAGTGGATT+TGG + chr4_4:47920919-47920938 Msa0684530:CDS 50.0%
! GGCAAGATCTGGCGTTTTGA+TGG - chr4_4:47921129-47921148 None:intergenic 50.0%
AGGGTTGCGTCGTTTCCTAG+TGG + chr4_4:47915750-47915769 Msa0684530:CDS 55.0%
ACTCCAGTGTTACAGGGGTC+AGG - chr4_4:47919453-47919472 None:intergenic 55.0%
GACCCCTGTAACACTGGAGT+TGG + chr4_4:47919453-47919472 Msa0684530:CDS 55.0%
CCACCCAACTCCAGTGTTAC+AGG - chr4_4:47919460-47919479 None:intergenic 55.0%
CCTGTAACACTGGAGTTGGG+TGG + chr4_4:47919457-47919476 Msa0684530:CDS 55.0%
! GCCGTGAAGCGGATTCTTGT+GGG + chr4_4:47919936-47919955 Msa0684530:CDS 55.0%
GGTTATCCAAGGGGGACCAC+AGG + chr4_4:47919132-47919151 Msa0684530:CDS 60.0%
GCACCTGACCCCTGTAACAC+TGG + chr4_4:47919447-47919466 Msa0684530:CDS 60.0%
! GGCCGTGAAGCGGATTCTTG+TGG + chr4_4:47919935-47919954 Msa0684530:CDS 60.0%
CGGATTCCTGTGGTCCCCCT+TGG - chr4_4:47919141-47919160 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 47915631 47921768 47915631 ID=Msa0684530;Name=Msa0684530
chr4_4 mRNA 47915631 47921768 47915631 ID=Msa0684530-mRNA-1;Parent=Msa0684530;Name=Msa0684530-mRNA-1;_AED=0.35;_eAED=0.35;_QI=24|1|1|1|1|1|10|613|490
chr4_4 exon 47915631 47915846 47915631 ID=Msa0684530-mRNA-1:exon:11847;Parent=Msa0684530-mRNA-1
chr4_4 exon 47918489 47918557 47918489 ID=Msa0684530-mRNA-1:exon:11848;Parent=Msa0684530-mRNA-1
chr4_4 exon 47918684 47918780 47918684 ID=Msa0684530-mRNA-1:exon:11849;Parent=Msa0684530-mRNA-1
chr4_4 exon 47918996 47919202 47918996 ID=Msa0684530-mRNA-1:exon:11850;Parent=Msa0684530-mRNA-1
chr4_4 exon 47919404 47919528 47919404 ID=Msa0684530-mRNA-1:exon:11851;Parent=Msa0684530-mRNA-1
chr4_4 exon 47919933 47920037 47919933 ID=Msa0684530-mRNA-1:exon:11852;Parent=Msa0684530-mRNA-1
chr4_4 exon 47920124 47920296 47920124 ID=Msa0684530-mRNA-1:exon:11853;Parent=Msa0684530-mRNA-1
chr4_4 exon 47920387 47920477 47920387 ID=Msa0684530-mRNA-1:exon:11854;Parent=Msa0684530-mRNA-1
chr4_4 exon 47920653 47920802 47920653 ID=Msa0684530-mRNA-1:exon:11855;Parent=Msa0684530-mRNA-1
chr4_4 exon 47920892 47921768 47920892 ID=Msa0684530-mRNA-1:exon:11856;Parent=Msa0684530-mRNA-1
chr4_4 five_prime_UTR 47915631 47915654 47915631 ID=Msa0684530-mRNA-1:five_prime_utr;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47915655 47915846 47915655 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47918489 47918557 47918489 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47918684 47918780 47918684 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47918996 47919202 47918996 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47919404 47919528 47919404 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47919933 47920037 47919933 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47920124 47920296 47920124 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47920387 47920477 47920387 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47920653 47920802 47920653 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 CDS 47920892 47921155 47920892 ID=Msa0684530-mRNA-1:cds;Parent=Msa0684530-mRNA-1
chr4_4 three_prime_UTR 47921156 47921768 47921156 ID=Msa0684530-mRNA-1:three_prime_utr;Parent=Msa0684530-mRNA-1
Gene Sequence

>Msa0684530

ATGGGAACTTTGGAGATAGATCATCTAAAGAATATGAGAGAATATTTTAGGAGTGGAAAAACAAAAGAAGCATCTTGGAGAGAATCACAACTAAAAGGGTTGCGTCGTTTCCTAGTGGAAAAAGAGAATGATATCTTCATGGCCCTCATGCAAGATTTAGGGAAACACCGTCTTGAAGCTTTTAGAGACGAGATAGGAACGTTAGTGAAGACCTTAAATCTTGCATTAAAGTGTCTGAAAGATTGGATGTCAAGCAAGAAGGCTCCACTACCTGCAATAGCATTGCTTTCAAGTGCAGAAATTGTTCATGAGCCTTTGGGTCTCGTCCTCATTATTTCATCTTGGAATTTACCCTTTGGATTGTCTTTGGAGCCACTGATAGGAGCTATAGCTGCTGGAAACGTAGCAGTGTTAAAACCTTCAGAGTTGTCTCCTGCATGTTCCTCTCTACTTGCTTCTGGCATTACCGCTTACTTGGACAATAAAGCCATTAAGGTTATCCAAGGGGGACCACAGGAATCCGACCAATTATTACAGCAAAAATGGGACAAAATCTTCTTTACAGGTAGTGCACGAGTGGGGAGCATTGTGATGTCAGCAGCTGCGAAGCACCTGACCCCTGTAACACTGGAGTTGGGTGGAAAATGCCCTGCAGTTGTGGACTCACTTTCATCTTCTTGGGATTTAGAGGTGGCCGTGAAGCGGATTCTTGTGGGAAAATATGGAACTTGTGCTGGTCAAGCATGCATAGCAATTGACTATGTCATCGTCGAAAAGAGTTGCTGTTCAAAATTGGTGGAATTGATGAAGGTGTGGATCAAGAAAATGTTTGGAGACAACCCACAACATTCCAACACTATAGCAAGGATAGTTAATAATCAACACTTAACTAGATTAAAGAAACTTCTTGATGATCAAAAGGTTCAAGAATCTGTGGTTTATGGTGGCTCAATTGACGAAGAAAACTTATTTATTGAGCCAACAATTTTGGTGGATCCCCCACTTGATGCAGCAATAATGTTAGATGAAGTTTTTGGCCCACTACTTCCAATTATTACTGTGGAGAAGATTGAGGACAGTATTGAATTCATAAGCTCTAGGCCTAAACCTCTTGCCCTTTATGTATTCACCAAAAACCAAACATTGCAGAACAGAATGATATCTGAAACATCATCTGGCAGTGTTACTTTCAATGATGCAATTCTACAATATGCAGCAGATAGTCTACCATTTGGAGGAGTAGGTGGAAGTGGATTTGGCATGTACCATGGGAAATTCTCTTTTGACACATTCAGTCACCAAAAAGCAATTGTTAGAAGAAGTTTCTTAACTGATTTTTGGTATAGATATCCACCATGGACTGCAAATAAGTTTCAACTACTTGAGGTCTCTTATAATTATGATTATTTGGGATTGGTCCTTGTTATTCTTGGATTAAAGAGACCATCAAAACGCCAGATCTTGCCTTGTTAG

Protein sequence

>Msa0684530

MGTLEIDHLKNMREYFRSGKTKEASWRESQLKGLRRFLVEKENDIFMALMQDLGKHRLEAFRDEIGTLVKTLNLALKCLKDWMSSKKAPLPAIALLSSAEIVHEPLGLVLIISSWNLPFGLSLEPLIGAIAAGNVAVLKPSELSPACSSLLASGITAYLDNKAIKVIQGGPQESDQLLQQKWDKIFFTGSARVGSIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGTCAGQACIAIDYVIVEKSCCSKLVELMKVWIKKMFGDNPQHSNTIARIVNNQHLTRLKKLLDDQKVQESVVYGGSIDEENLFIEPTILVDPPLDAAIMLDEVFGPLLPIITVEKIEDSIEFISSRPKPLALYVFTKNQTLQNRMISETSSGSVTFNDAILQYAADSLPFGGVGGSGFGMYHGKFSFDTFSHQKAIVRRSFLTDFWYRYPPWTANKFQLLEVSYNYDYLGLVLVILGLKRPSKRQILPC*