AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0748700

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748700 MtrunA17_Chr1g0162721 51.297 347 109 9 1 327 1 307 2.00e-95 285
Msa0748700 MtrunA17_Chr4g0065261 82.558 86 15 0 14 99 4 89 2.65e-50 165
Msa0748700 MtrunA17_Chr4g0065261 62.857 140 39 2 189 328 50 176 1.59e-47 158
Msa0748700 MtrunA17_Chr2g0302481 40.851 235 88 6 95 327 3 188 3.95e-36 129
Msa0748700 MtrunA17_Chr8g0373571 40.909 88 49 2 237 321 252 339 1.77e-13 70.5
Msa0748700 MtrunA17_Chr2g0302501 36.667 150 46 6 1 149 20 121 3.86e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0748700 AT4G36730.2 38.750 80 48 1 243 321 220 299 2.21e-11 64.3
Msa0748700 AT4G36730.1 38.750 80 48 1 243 321 222 301 2.30e-11 64.3

Find 98 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTACAGGTTGTGAGTTTC+TGG 0.129427 5_2:+1944728 None:intergenic
CTCAGCTAGTAGAGATTTAT+TGG 0.150152 5_2:+1945064 None:intergenic
CCATCCTTTCTTTCCTTATT+AGG 0.181504 5_2:-1947184 Msa0748700:intron
GTTTCCTCAATTGGGTCATT+AGG 0.201635 5_2:-1947524 Msa0748700:five_prime_UTR
TCTCTTTGAAAGAGATATTC+TGG 0.219563 5_2:-1947276 Msa0748700:five_prime_UTR
TCCCCAGTTATTAATCTTAC+AGG 0.249858 5_2:+1944714 None:intergenic
GTAAATAATTGGTTGGAATC+TGG 0.251335 5_2:+1944750 None:intergenic
GAGAACAAGGATTTATCTTT+TGG 0.256634 5_2:-1943509 Msa0748700:CDS
AATTGTTATGTTTCCTCAAT+TGG 0.257703 5_2:-1947533 Msa0748700:five_prime_UTR
GTGAGTTTCTGGTAAATAAT+TGG 0.270018 5_2:+1944739 None:intergenic
TTTCCTCAATTGGGTCATTA+GGG 0.281779 5_2:-1947523 Msa0748700:five_prime_UTR
TCTATCTTAAAACTGTTGTT+TGG 0.287250 5_2:+1940517 None:intergenic
TAATTAATACTGACCTAATA+AGG 0.289293 5_2:+1947171 None:intergenic
CAAAGAAATTGTTGTAATAC+TGG 0.291279 5_2:+1944616 None:intergenic
ACTGGGGAATCAAGTGAATA+TGG 0.297191 5_2:-1944699 Msa0748700:CDS
GAGAACAAGGTTAAGGAAAA+AGG 0.303213 5_2:-1942088 Msa0748700:intron
TGCAGGTGGATGATTATAAT+AGG 0.311712 5_2:+1945344 None:intergenic
CGAAAAGTTAGTATATTCAT+AGG 0.338095 5_2:-1947413 Msa0748700:five_prime_UTR
CAACCTGTAAGATTAATAAC+TGG 0.342383 5_2:-1944717 Msa0748700:CDS
TGATGCTCAACTAAAATATA+TGG 0.343775 5_2:-1943226 Msa0748700:intron
CTATCTTAAAACTGTTGTTT+GGG 0.352965 5_2:+1940518 None:intergenic
TGCAATTGCTTTCTCAGAAA+TGG 0.357172 5_2:-1944799 Msa0748700:CDS
AACTTCGGTGGCTGTTCTTC+AGG 0.362018 5_2:-1947325 Msa0748700:five_prime_UTR
GGATGATTATAATAGGGATT+TGG 0.374399 5_2:+1945351 None:intergenic
CTGCTGCTTGACATTGTAAC+TGG 0.378764 5_2:-1940547 Msa0748700:exon
CTTGGCTGATTCAGAGTTTG+AGG 0.379924 5_2:-1943284 Msa0748700:CDS
CGCATAAAATATGCAAGGTC+CGG 0.383046 5_2:+1940404 None:intergenic
ATTGTTATGTTTCCTCAATT+GGG 0.386848 5_2:-1947532 Msa0748700:five_prime_UTR
TAAATAATTGGTTGGAATCT+GGG 0.388774 5_2:+1944751 None:intergenic
AAGTTATTCTGAGGCATGTC+TGG 0.390063 5_2:-1941081 Msa0748700:CDS
GAAGAGCTAATTAAGGAGTA+TGG 0.396074 5_2:-1940605 Msa0748700:CDS
CAGATATCTAAGATGAATGT+TGG 0.419613 5_2:-1943539 Msa0748700:CDS
AGATATCTAAGATGAATGTT+GGG 0.419993 5_2:-1943538 Msa0748700:CDS
TCAGTACATGTGGCAAAATC+AGG 0.421341 5_2:-1945241 Msa0748700:intron
AAGAGAAGCAGCGGAATTCA+TGG 0.423276 5_2:-1947248 Msa0748700:five_prime_UTR
GATTTATTGGAGAGCTTCAC+AGG 0.424141 5_2:+1945077 None:intergenic
GATATCTGCTTCTTACATAT+AGG 0.425971 5_2:+1943554 None:intergenic
TTATTTATTTAGGAAGCTAC+TGG 0.426347 5_2:-1945921 Msa0748700:intron
GGTGGTCGGGGTTTGAACCC+CGG 0.447960 5_2:-1940423 Msa0748700:three_prime_UTR
GGAACAGGAAGAGCTAATTA+AGG 0.452723 5_2:-1940612 Msa0748700:intron
CAGCTAAGAGAACAAGGTTA+AGG 0.453072 5_2:-1942095 Msa0748700:CDS
AAAGAAGAATCCGATCCATC+TGG 0.459016 5_2:-1945870 Msa0748700:CDS
ATGATTCGCAATAACAATGA+TGG 0.462924 5_2:+1947213 None:intergenic
GCAGGTGGATGATTATAATA+GGG 0.469270 5_2:+1945345 None:intergenic
CTGACCTAATAAGGAAAGAA+AGG 0.472099 5_2:+1947180 None:intergenic
TGAGCTTAGCTCAGTTGGTA+TGG 0.483493 5_2:+1940377 None:intergenic
CAATAACAATGATGGGAGTA+AGG 0.490440 5_2:+1947221 None:intergenic
AACAATGATGGGAGTAAGGT+TGG 0.495543 5_2:+1947225 None:intergenic
GTTTCTGGTAAATAATTGGT+TGG 0.499066 5_2:+1944743 None:intergenic
GCATAAAATATGCAAGGTCC+GGG 0.499470 5_2:+1940405 None:intergenic
CCTAATAAGGAAAGAAAGGA+TGG 0.499771 5_2:+1947184 None:intergenic
AATTGGCACCACTGCGAAAG+TGG 0.515372 5_2:-1947362 Msa0748700:five_prime_UTR
CTTTCTCAGAAATGGTAAGC+AGG 0.515920 5_2:-1944791 Msa0748700:CDS
CAGTGGTGCCAATTAAAACA+AGG 0.515998 5_2:+1947371 None:intergenic
CCTCATGAGCTTAGCTCAGT+TGG 0.516816 5_2:+1940372 None:intergenic
TGAGGTACCACAAAATAGTA+AGG 0.518570 5_2:+1945843 None:intergenic
AAACTCTGAATCAGCCAAGA+TGG 0.521783 5_2:+1943288 None:intergenic
TATAATCATCCACCTGCAGC+TGG 0.532701 5_2:-1945339 Msa0748700:CDS
CAGTTACAATGTCAAGCAGC+AGG 0.542255 5_2:+1940548 None:intergenic
AAACCCTAATGACCCAATTG+AGG 0.548077 5_2:+1947520 None:intergenic
AACCTGTAAGATTAATAACT+GGG 0.551341 5_2:-1944716 Msa0748700:CDS
GTTCTTCAGGACGACGGTGT+GGG 0.556748 5_2:-1947312 Msa0748700:five_prime_UTR
CAAGTTTCTCAAGCTTGATG+AGG 0.558785 5_2:-1945893 Msa0748700:exon
AAATAGTAAGGTCTTCCAGA+TGG 0.566947 5_2:+1945855 None:intergenic
GTTAAAATGATGAACCTCGA+TGG 0.568844 5_2:+1941037 None:intergenic
TTGAATCATCAGTATGCAGA+TGG 0.569444 5_2:-1945279 Msa0748700:CDS
TGATTCGCAATAACAATGAT+GGG 0.570483 5_2:+1947214 None:intergenic
GAAAAGTTAGTATATTCATA+GGG 0.572729 5_2:-1947412 Msa0748700:five_prime_UTR
TGTTCTTCAGGACGACGGTG+TGG 0.575745 5_2:-1947313 Msa0748700:five_prime_UTR
CTCATGTAAGAACCAGCTGC+AGG 0.577655 5_2:+1945327 None:intergenic
TGTTGGGGATGGTGAGAACA+AGG 0.580631 5_2:-1943522 Msa0748700:CDS
ATAGGGATTTGGAGTAAACT+CGG 0.582242 5_2:+1945362 None:intergenic
GAGGAGCTAGCTAGCAACTT+CGG 0.586338 5_2:-1947340 Msa0748700:five_prime_UTR
GTAAGGTCTTCCAGATGGAT+CGG 0.588408 5_2:+1945860 None:intergenic
GAAATCTAAGATGACTGTTG+AGG 0.593683 5_2:-1943474 Msa0748700:CDS
TAGGGATTTGGAGTAAACTC+GGG 0.602326 5_2:+1945363 None:intergenic
CATGATTCACTGACATCTTG+AGG 0.602539 5_2:+1945825 None:intergenic
CCAACTGAGCTAAGCTCATG+AGG 0.606528 5_2:-1940372 Msa0748700:three_prime_UTR
CAATAAATCTCTACTAGCTG+AGG 0.606627 5_2:-1945063 Msa0748700:intron
CTGGAAATTAAGAGAAGCAG+CGG 0.607828 5_2:-1947257 Msa0748700:five_prime_UTR
GGGAATCAGCTAAGAGAACA+AGG 0.611347 5_2:-1942101 Msa0748700:CDS
GAGTTTGAGGACAGTCGTCA+AGG 0.611746 5_2:-1943271 Msa0748700:CDS
GATATCTAAGATGAATGTTG+GGG 0.621950 5_2:-1943537 Msa0748700:CDS
GACAACGCATAAAATATGCA+AGG 0.627666 5_2:+1940399 None:intergenic
CTGAGCTAAGCTCATGAGGA+CGG 0.629312 5_2:-1940368 Msa0748700:three_prime_UTR
ACTTGAATCATCAGTACATG+TGG 0.630018 5_2:-1945251 Msa0748700:CDS
ATGTAAGAACCAGCTGCAGG+TGG 0.634873 5_2:+1945330 None:intergenic
GTGGCTGTTCTTCAGGACGA+CGG 0.649171 5_2:-1947318 Msa0748700:five_prime_UTR
TCTAAGATGACTGTTGAGGA+TGG 0.650064 5_2:-1943470 Msa0748700:intron
TGGCACCACTGCGAAAGTGG+AGG 0.657068 5_2:-1947359 Msa0748700:five_prime_UTR
TCTAAGATGAATGTTGGGGA+TGG 0.657589 5_2:-1943533 Msa0748700:CDS
CATAAAATATGCAAGGTCCG+GGG 0.663773 5_2:+1940406 None:intergenic
AGTGGTGCCAATTAAAACAA+GGG 0.667449 5_2:+1947372 None:intergenic
TAGCTCCTCCACTTTCGCAG+TGG 0.675400 5_2:+1947354 None:intergenic
ACCTGTAAGATTAATAACTG+GGG 0.682506 5_2:-1944715 Msa0748700:CDS
GAGCTAGCTAGCAACTTCGG+TGG 0.705585 5_2:-1947337 Msa0748700:five_prime_UTR
TCTTTCAAAGAGACAAAGTG+CGG 0.729169 5_2:+1947286 None:intergenic
TGATGAAAACGATTCCATCG+AGG 0.749293 5_2:-1941051 Msa0748700:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAATATTATAGTATC+TGG + chr5_2:1940805-1940824 None:intergenic 10.0%
!!! CTAATTTTTAAAAGAAATAA+CGG + chr5_2:1941143-1941162 None:intergenic 10.0%
!!! TTTTAAAAATTAGTATCAAT+TGG - chr5_2:1941150-1941169 Msa0748700:CDS 10.0%
!! TTAAAAGCTATTATTTATTT+AGG - chr5_2:1941859-1941878 Msa0748700:intron 10.0%
!!! ACTCATTTTAAATTTTAATT+AGG - chr5_2:1942393-1942412 Msa0748700:intron 10.0%
!! TATTATAACTAACAAAATTA+TGG + chr5_2:1945345-1945364 None:intergenic 10.0%
!! CTAAAAGATATATTAAAAAA+TGG + chr5_2:1945878-1945897 None:intergenic 10.0%
!! ATTTAAAGAAAATTAGAATA+AGG + chr5_2:1945926-1945945 None:intergenic 10.0%
!! TATAAAATTGAAAAAATAAG+GGG + chr5_2:1946780-1946799 None:intergenic 10.0%
!! GATATAAAATTGAAAAAATA+AGG + chr5_2:1946782-1946801 None:intergenic 10.0%
!!! TCTATCATTTTTTATTTATT+TGG - chr5_2:1947319-1947338 Msa0748700:five_prime_UTR 10.0%
!!! CTATCATTTTTTATTTATTT+GGG - chr5_2:1947320-1947339 Msa0748700:five_prime_UTR 10.0%
!! CTACATTAATAAAGAAAATT+TGG + chr5_2:1940725-1940744 None:intergenic 15.0%
!!! CAAATTTTCTTTATTAATGT+AGG - chr5_2:1940723-1940742 Msa0748700:intron 15.0%
!! CTATAATATTATTATATCAC+TGG - chr5_2:1940809-1940828 Msa0748700:intron 15.0%
!!! ATTTTACAATTGTGTTTTAA+CGG - chr5_2:1941230-1941249 Msa0748700:intron 15.0%
!! AAAAATTAAATAGACATACT+CGG + chr5_2:1941279-1941298 None:intergenic 15.0%
!!! TTTTATTGTTTTCCAATATT+AGG - chr5_2:1941295-1941314 Msa0748700:intron 15.0%
!!! TTTATTGTTTTCCAATATTA+GGG - chr5_2:1941296-1941315 Msa0748700:intron 15.0%
!!! AGATTGCTTTTTTTTTATTT+AGG - chr5_2:1941645-1941664 Msa0748700:intron 15.0%
!! TTTATCAATTACTCAAATAA+TGG + chr5_2:1941727-1941746 None:intergenic 15.0%
!! ATATATTCATTGAAATATCT+AGG + chr5_2:1942757-1942776 None:intergenic 15.0%
!!! TTTTCTAATCATAATTTCTA+TGG - chr5_2:1942800-1942819 Msa0748700:intron 15.0%
!! TTTCTAATCATAATTTCTAT+GGG - chr5_2:1942801-1942820 Msa0748700:intron 15.0%
!!! AATCATTAATTTTTCATTGA+TGG - chr5_2:1943471-1943490 Msa0748700:CDS 15.0%
!!! ATTAAATGCTAATTTAAGAT+GGG + chr5_2:1944744-1944763 None:intergenic 15.0%
!! AATTAAATGCTAATTTAAGA+TGG + chr5_2:1944745-1944764 None:intergenic 15.0%
!!! TTAGATATTCTTAATTTTGT+TGG - chr5_2:1945278-1945297 Msa0748700:CDS 15.0%
!!! ACTTGAAAAAAAAAACTTTT+GGG + chr5_2:1945903-1945922 None:intergenic 15.0%
!! AATGAAATAAACTAAAAACT+AGG - chr5_2:1946904-1946923 Msa0748700:intron 15.0%
!! GAAAAGTTAGTATATTCATA+GGG - chr5_2:1940378-1940397 Msa0748700:three_prime_UTR 20.0%
!!! TATTTAACCCTTGTTTTAAT+TGG - chr5_2:1940411-1940430 Msa0748700:three_prime_UTR 20.0%
!! TAATTAATACTGACCTAATA+AGG + chr5_2:1940622-1940641 None:intergenic 20.0%
!!! GTTTTTTAGAAAAAATGGAA+AGG + chr5_2:1940699-1940718 None:intergenic 20.0%
!!! GGATTGTTTTTTAGAAAAAA+TGG + chr5_2:1940704-1940723 None:intergenic 20.0%
!!! CAAAAATAGGTGAAATATTT+TGG + chr5_2:1940848-1940867 None:intergenic 20.0%
!! AAAAAATCAAAGCAAATAGT+AGG + chr5_2:1941078-1941097 None:intergenic 20.0%
!!! TATGGTATTTTTTTAGTTGA+TGG - chr5_2:1941181-1941200 Msa0748700:intron 20.0%
!!! TTATTGTTTTCCAATATTAG+GGG - chr5_2:1941297-1941316 Msa0748700:intron 20.0%
!! TAACAACATTAATAGTGATA+CGG + chr5_2:1941522-1941541 None:intergenic 20.0%
!!! TTTTCACATTCTTTGTTTTT+CGG - chr5_2:1942646-1942665 Msa0748700:intron 20.0%
!! AGGAAATTTCATATTTCTTT+AGG - chr5_2:1942835-1942854 Msa0748700:intron 20.0%
!! AAACTTATACACAATTCATT+AGG + chr5_2:1942929-1942948 None:intergenic 20.0%
!!! ATACCAATATTTATGCATTT+TGG - chr5_2:1942959-1942978 Msa0748700:intron 20.0%
!! TGCTAAAATGACATATAATT+TGG - chr5_2:1943527-1943546 Msa0748700:CDS 20.0%
!! GCTAAAATGACATATAATTT+GGG - chr5_2:1943528-1943547 Msa0748700:CDS 20.0%
!! ATTCATTGTTAAAATGTAGT+AGG - chr5_2:1943769-1943788 Msa0748700:intron 20.0%
!! TCTTAGATATTGGAATTAAT+GGG - chr5_2:1944052-1944071 Msa0748700:intron 20.0%
!! ATCAATTTATTCTTCATTAC+AGG - chr5_2:1944153-1944172 Msa0748700:intron 20.0%
!!! GTTTGAAAAGGTTTTATTTA+TGG - chr5_2:1944618-1944637 Msa0748700:CDS 20.0%
!!! GTATCTAAGATATATAAAGT+AGG + chr5_2:1944845-1944864 None:intergenic 20.0%
!! TAATAAGTGCTTAAAATGTT+TGG + chr5_2:1945127-1945146 None:intergenic 20.0%
!!! AAACATTTTAAGCACTTATT+AGG - chr5_2:1945126-1945145 Msa0748700:intron 20.0%
!! AAATTATGGCTAGAATTATA+GGG + chr5_2:1945331-1945350 None:intergenic 20.0%
!! AAAATTATGGCTAGAATTAT+AGG + chr5_2:1945332-1945351 None:intergenic 20.0%
!! ATGAAAGGTTTATAAATGAT+AGG + chr5_2:1945467-1945486 None:intergenic 20.0%
!! AAGATTAATTCTTAACTATC+TGG - chr5_2:1945579-1945598 Msa0748700:intron 20.0%
!!! CTTGAAAAAAAAAACTTTTG+GGG + chr5_2:1945902-1945921 None:intergenic 20.0%
!!! GACTTGAAAAAAAAAACTTT+TGG + chr5_2:1945904-1945923 None:intergenic 20.0%
!! TGATTATGATTATACATGTT+AGG - chr5_2:1946329-1946348 Msa0748700:intron 20.0%
!! GATTATGATTATACATGTTA+GGG - chr5_2:1946330-1946349 Msa0748700:intron 20.0%
!! TATGATTGTTGTATATTCAT+CGG - chr5_2:1946416-1946435 Msa0748700:intron 20.0%
!!! AACTTTTTAGTTGTTTTGTT+AGG + chr5_2:1946694-1946713 None:intergenic 20.0%
!! AAAAAGAAATGAAAACAGTT+AGG - chr5_2:1946945-1946964 Msa0748700:intron 20.0%
! CGAAAAGTTAGTATATTCAT+AGG - chr5_2:1940377-1940396 Msa0748700:three_prime_UTR 25.0%
!! ACAAGGGTTAAATATGTTTT+TGG + chr5_2:1940405-1940424 None:intergenic 25.0%
! AGTATCTGGATGAATAAATT+TGG + chr5_2:1940791-1940810 None:intergenic 25.0%
!!! AAATATTTTGGTCCAAAATC+TGG + chr5_2:1940836-1940855 None:intergenic 25.0%
! AAATTAGTATCAATTGGAGT+AGG - chr5_2:1941156-1941175 Msa0748700:intron 25.0%
!! TGATGTTTTGTACATTATCT+TGG - chr5_2:1941827-1941846 Msa0748700:intron 25.0%
! TTATTTATTTAGGAAGCTAC+TGG - chr5_2:1941869-1941888 Msa0748700:intron 25.0%
!!! AAAATGTTTTAAACCTGCAT+AGG + chr5_2:1942116-1942135 None:intergenic 25.0%
! GGTAATGATGTACATATTTA+TGG - chr5_2:1942570-1942589 Msa0748700:intron 25.0%
! ATTTCATATTTCTTTAGGTG+CGG - chr5_2:1942840-1942859 Msa0748700:intron 25.0%
! TGACCAAAATGCATAAATAT+TGG + chr5_2:1942965-1942984 None:intergenic 25.0%
!!! AATATTTATGCATTTTGGTC+AGG - chr5_2:1942964-1942983 Msa0748700:intron 25.0%
! TAAATAATTGGTTGGAATCT+GGG + chr5_2:1943042-1943061 None:intergenic 25.0%
! AACCTGTAAGATTAATAACT+GGG - chr5_2:1943074-1943093 Msa0748700:intron 25.0%
! CAAAGAAATTGTTGTAATAC+TGG + chr5_2:1943177-1943196 None:intergenic 25.0%
!! ATTTTCGTGAAATTGTCAAA+GGG + chr5_2:1943307-1943326 None:intergenic 25.0%
!! AATTTTCGTGAAATTGTCAA+AGG + chr5_2:1943308-1943327 None:intergenic 25.0%
! GAAGTGTAATTAATGTTGTA+TGG - chr5_2:1943330-1943349 Msa0748700:intron 25.0%
! ATAGAGAAATAAACAGCTAA+TGG - chr5_2:1943434-1943453 Msa0748700:intron 25.0%
! TGGTGTAAAATGACATAATT+TGG - chr5_2:1943491-1943510 Msa0748700:CDS 25.0%
! GGTGTAAAATGACATAATTT+GGG - chr5_2:1943492-1943511 Msa0748700:CDS 25.0%
!! GGAGTACTATTAAATGTTAT+AGG - chr5_2:1943556-1943575 Msa0748700:CDS 25.0%
!! TTTTTGTAGCATGTTTGAAA+AGG - chr5_2:1943579-1943598 Msa0748700:intron 25.0%
!!! GTTTGAAAAGGTTTTATTTG+TGG - chr5_2:1943591-1943610 Msa0748700:intron 25.0%
! TATGTATCGAAGATACATAA+AGG + chr5_2:1943837-1943856 None:intergenic 25.0%
! GATACATATTTAAATCCCTT+AGG - chr5_2:1943849-1943868 Msa0748700:intron 25.0%
!! TTTTCTACGGCAATTATAAA+TGG + chr5_2:1943894-1943913 None:intergenic 25.0%
!!! AACCCTTGTAATTTTTTCTA+CGG + chr5_2:1943907-1943926 None:intergenic 25.0%
! CTCTTAGATATTGGAATTAA+TGG - chr5_2:1944051-1944070 Msa0748700:intron 25.0%
! AAGAAATGGGTAGTTTATTA+AGG - chr5_2:1944119-1944138 Msa0748700:intron 25.0%
!! AGATATCTAAGATGAATGTT+GGG - chr5_2:1944252-1944271 Msa0748700:intron 25.0%
! TAAAATTTGAATGCTCAGAA+AGG - chr5_2:1944400-1944419 Msa0748700:intron 25.0%
! TGATGCTCAACTAAAATATA+TGG - chr5_2:1944564-1944583 Msa0748700:intron 25.0%
!! TTTTCATAGCATGTTTGAAA+AGG - chr5_2:1944606-1944625 Msa0748700:CDS 25.0%
! TCAAAAAAGTAAGTTTGCAT+GGG + chr5_2:1944686-1944705 None:intergenic 25.0%
! TTCAAAAAAGTAAGTTTGCA+TGG + chr5_2:1944687-1944706 None:intergenic 25.0%
! ATTCACTGTTGAAATATAGT+AGG - chr5_2:1944780-1944799 Msa0748700:CDS 25.0%
!! ATGTCATCTTTTCTTTCTTT+AGG + chr5_2:1943802-1943821 None:intergenic 25.0%
! ATGAGACAATGTATCTTTAA+GGG + chr5_2:1944878-1944897 None:intergenic 25.0%
! TATGAGACAATGTATCTTTA+AGG + chr5_2:1944879-1944898 None:intergenic 25.0%
!!! ACTATTGAGCTTTAAATTGT+TGG - chr5_2:1945236-1945255 Msa0748700:intron 25.0%
! ATATCTAACAAGATTTGAGA+TGG + chr5_2:1945266-1945285 None:intergenic 25.0%
!! AGTTATAATATGTTTTCGTG+TGG - chr5_2:1945355-1945374 Msa0748700:CDS 25.0%
! TAGAATGTTGGATTGTAAAA+TGG + chr5_2:1945504-1945523 None:intergenic 25.0%
! AAAGAAAAAGACAATCAAAC+AGG - chr5_2:1945668-1945687 Msa0748700:intron 25.0%
! AAGAAAAAGACAATCAAACA+GGG - chr5_2:1945669-1945688 Msa0748700:intron 25.0%
!! CAATATTTTCTGCAATTATG+AGG + chr5_2:1945788-1945807 None:intergenic 25.0%
! AATATCTATGATTTCGACAA+TGG - chr5_2:1945809-1945828 Msa0748700:intron 25.0%
! AAAACTGTAAAAAAAAGTCG+TGG - chr5_2:1945844-1945863 Msa0748700:CDS 25.0%
! AAACTGTAAAAAAAAGTCGT+GGG - chr5_2:1945845-1945864 Msa0748700:CDS 25.0%
!! CAATTAGTTTAGTCAAAGAT+AGG - chr5_2:1945997-1946016 Msa0748700:intron 25.0%
!!! AAGAAACAATGTTTTTAGCT+TGG - chr5_2:1946109-1946128 Msa0748700:intron 25.0%
! GTTTCCTTATTATGAACTTA+TGG - chr5_2:1946259-1946278 Msa0748700:intron 25.0%
! ACAATCATGTTCCAAATAAA+GGG + chr5_2:1946304-1946323 None:intergenic 25.0%
! TACAATCATGTTCCAAATAA+AGG + chr5_2:1946305-1946324 None:intergenic 25.0%
!! TTTATTTGGAACATGATTGT+AGG - chr5_2:1946304-1946323 Msa0748700:intron 25.0%
! AAAGATACTAATTGGCAATT+TGG + chr5_2:1946453-1946472 None:intergenic 25.0%
! TGGTAATCAAAGATACTAAT+TGG + chr5_2:1946461-1946480 None:intergenic 25.0%
!!! AAGTTTTATATGTTTCCATG+AGG + chr5_2:1946558-1946577 None:intergenic 25.0%
! ACAACTAAAAAGTTATTCTG+AGG - chr5_2:1946700-1946719 Msa0748700:intron 25.0%
!! ATTCAACTAAAGTACTTGTT+TGG - chr5_2:1946806-1946825 Msa0748700:intron 25.0%
!! TTATTCAAAGCTTTTGATGT+TGG - chr5_2:1947065-1947084 Msa0748700:intron 25.0%
!! CTATCTTAAAACTGTTGTTT+GGG + chr5_2:1947275-1947294 None:intergenic 25.0%
! TCTATCTTAAAACTGTTGTT+TGG + chr5_2:1947276-1947295 None:intergenic 25.0%
!!! CATTTTTTATTTATTTGGGC+TGG - chr5_2:1947324-1947343 Msa0748700:five_prime_UTR 25.0%
! TCTCTTTGAAAGAGATATTC+TGG - chr5_2:1940514-1940533 Msa0748700:three_prime_UTR 30.0%
TGATTCGCAATAACAATGAT+GGG + chr5_2:1940579-1940598 None:intergenic 30.0%
ATGATTCGCAATAACAATGA+TGG + chr5_2:1940580-1940599 None:intergenic 30.0%
CTGGATGAATAAATTTGGAT+TGG + chr5_2:1940786-1940805 None:intergenic 30.0%
!!! GGTATTTTTTTAGTTGATGG+TGG - chr5_2:1941184-1941203 Msa0748700:intron 30.0%
AGATATTAATGGAGAGAAAG+TGG + chr5_2:1941414-1941433 None:intergenic 30.0%
!! AATGAGAATTAAGTTGAGAG+AGG + chr5_2:1941486-1941505 None:intergenic 30.0%
TAATAGTGATACGGAAAAGA+TGG + chr5_2:1941513-1941532 None:intergenic 30.0%
TATAGCATAGCAGAATTTAG+CGG - chr5_2:1941551-1941570 Msa0748700:intron 30.0%
CTCTATTCAATCACATATTG+TGG + chr5_2:1941623-1941642 None:intergenic 30.0%
! GTTCAAACTTTGAAGAAAGA+AGG + chr5_2:1941687-1941706 None:intergenic 30.0%
TACTCAAATAATGGCTTATC+AGG + chr5_2:1941718-1941737 None:intergenic 30.0%
TGCTTTGTATCAATTTGTGA+TGG - chr5_2:1942137-1942156 Msa0748700:CDS 30.0%
TCACAAAGCAATCATATGTA+TGG + chr5_2:1942268-1942287 None:intergenic 30.0%
! ATGATTGCTTTGTGATTTGT+TGG - chr5_2:1942273-1942292 Msa0748700:intron 30.0%
GGATGATTATAATAGGGATT+TGG + chr5_2:1942442-1942461 None:intergenic 30.0%
AAAGAATGTGAAAATGAAGC+AGG + chr5_2:1942640-1942659 None:intergenic 30.0%
TTCTATGGGTATACATTTAG+AGG - chr5_2:1942815-1942834 Msa0748700:intron 30.0%
TTTCATATTTCTTTAGGTGC+GGG - chr5_2:1942841-1942860 Msa0748700:intron 30.0%
GTAAATAATTGGTTGGAATC+TGG + chr5_2:1943043-1943062 None:intergenic 30.0%
!! GTTTCTGGTAAATAATTGGT+TGG + chr5_2:1943050-1943069 None:intergenic 30.0%
!! GTGAGTTTCTGGTAAATAAT+TGG + chr5_2:1943054-1943073 None:intergenic 30.0%
CAACCTGTAAGATTAATAAC+TGG - chr5_2:1943073-1943092 Msa0748700:intron 30.0%
ACCTGTAAGATTAATAACTG+GGG - chr5_2:1943075-1943094 Msa0748700:intron 30.0%
GTCAAAGGGACATATAATTT+GGG + chr5_2:1943293-1943312 None:intergenic 30.0%
TGTCAAAGGGACATATAATT+TGG + chr5_2:1943294-1943313 None:intergenic 30.0%
TTGCCGTAGAAAAAATTACA+AGG - chr5_2:1943901-1943920 Msa0748700:intron 30.0%
TGCCGTAGAAAAAATTACAA+GGG - chr5_2:1943902-1943921 Msa0748700:intron 30.0%
TAACTCAACCTCATAAGAAA+TGG - chr5_2:1944105-1944124 Msa0748700:intron 30.0%
AACTCAACCTCATAAGAAAT+GGG - chr5_2:1944106-1944125 Msa0748700:intron 30.0%
TAAACTACCCATTTCTTATG+AGG + chr5_2:1944116-1944135 None:intergenic 30.0%
! GGTCTTATGCTTAAAATCTT+TGG - chr5_2:1944174-1944193 Msa0748700:intron 30.0%
! GTCTAATTTTATCCTTTCTG+TGG - chr5_2:1944204-1944223 Msa0748700:intron 30.0%
GATATCTGCTTCTTACATAT+AGG + chr5_2:1944239-1944258 None:intergenic 30.0%
! CAGATATCTAAGATGAATGT+TGG - chr5_2:1944251-1944270 Msa0748700:intron 30.0%
! GATATCTAAGATGAATGTTG+GGG - chr5_2:1944253-1944272 Msa0748700:intron 30.0%
! GAGAACAAGGATTTATCTTT+TGG - chr5_2:1944281-1944300 Msa0748700:intron 30.0%
! ACAAGGATTTATCTTTTGGT+TGG - chr5_2:1944285-1944304 Msa0748700:intron 30.0%
! GAGAGTAAGGATTTATCTTT+TGG - chr5_2:1944344-1944363 Msa0748700:intron 30.0%
ATGAACTGCAATACAAGTTT+CGG + chr5_2:1944435-1944454 None:intergenic 30.0%
TCTTTGTAGAAAAACCATCT+TGG - chr5_2:1944488-1944507 Msa0748700:intron 30.0%
TATGGTACTGTAGAATGTTA+TGG - chr5_2:1944582-1944601 Msa0748700:intron 30.0%
ATGGTACTGTAGAATGTTAT+GGG - chr5_2:1944583-1944602 Msa0748700:intron 30.0%
TCAAGTTATGTTCTAACACA+AGG + chr5_2:1945204-1945223 None:intergenic 30.0%
AATGTTGGATTGTAAAATGG+TGG + chr5_2:1945501-1945520 None:intergenic 30.0%
GAATTAATCTTAGCAACCTT+AGG + chr5_2:1945570-1945589 None:intergenic 30.0%
GAAAAGAAATGCAGCTAAAT+AGG + chr5_2:1945622-1945641 None:intergenic 30.0%
CATATCTTAGTTTCCTTCAT+TGG - chr5_2:1946175-1946194 Msa0748700:intron 30.0%
AGCACCATAAGTTCATAATA+AGG + chr5_2:1946266-1946285 None:intergenic 30.0%
CAACAAACTTTCCCTTTATT+TGG - chr5_2:1946290-1946309 Msa0748700:intron 30.0%
AGTATCTTTGATTACCAATG+TGG - chr5_2:1946464-1946483 Msa0748700:intron 30.0%
AAAATTTGCAACTACCACAT+TGG + chr5_2:1946481-1946500 None:intergenic 30.0%
AAGAGATGTAAACAAAGTCA+AGG + chr5_2:1946517-1946536 None:intergenic 30.0%
ATGAAAACAGTTAGGATGTT+AGG - chr5_2:1946953-1946972 Msa0748700:intron 30.0%
! TAATTCTGAGTGTTGTATTG+TGG - chr5_2:1947101-1947120 Msa0748700:intron 30.0%
TTTCCTCAATTGGGTCATTA+GGG - chr5_2:1940267-1940286 Msa0748700:three_prime_UTR 35.0%
! AGTGGTGCCAATTAAAACAA+GGG + chr5_2:1940421-1940440 None:intergenic 35.0%
TCTTTCAAAGAGACAAAGTG+CGG + chr5_2:1940507-1940526 None:intergenic 35.0%
! CAATAACAATGATGGGAGTA+AGG + chr5_2:1940572-1940591 None:intergenic 35.0%
CCTAATAAGGAAAGAAAGGA+TGG + chr5_2:1940609-1940628 None:intergenic 35.0%
CCATCCTTTCTTTCCTTATT+AGG - chr5_2:1940606-1940625 Msa0748700:CDS 35.0%
CTGACCTAATAAGGAAAGAA+AGG + chr5_2:1940613-1940632 None:intergenic 35.0%
! TATATCACTGGACCAGATTT+TGG - chr5_2:1940821-1940840 Msa0748700:intron 35.0%
ACGAAAGTCAAAGTACGAAA+CGG + chr5_2:1940994-1941013 None:intergenic 35.0%
ACTTTCACTACTTCTACTTC+TGG - chr5_2:1941021-1941040 Msa0748700:intron 35.0%
AGAAATAACGGTACACAGAA+GGG + chr5_2:1941131-1941150 None:intergenic 35.0%
AAGAAATAACGGTACACAGA+AGG + chr5_2:1941132-1941151 None:intergenic 35.0%
TATCAATTGGAGTAGGCTTA+TGG - chr5_2:1941163-1941182 Msa0748700:intron 35.0%
CTAGACTAATCCCCTAATAT+TGG + chr5_2:1941310-1941329 None:intergenic 35.0%
AAGAGAGGGGAAGATATTAA+TGG + chr5_2:1941425-1941444 None:intergenic 35.0%
! GATGGAAAATAACCCTTTTC+TGG + chr5_2:1941464-1941483 None:intergenic 35.0%
!! AGAATTAAGTTGAGAGAGGA+TGG + chr5_2:1941482-1941501 None:intergenic 35.0%
AATGGCTTATCAGGTTTGAT+AGG + chr5_2:1941709-1941728 None:intergenic 35.0%
AAATAGTAAGGTCTTCCAGA+TGG + chr5_2:1941938-1941957 None:intergenic 35.0%
! TGGAAGACCTTACTATTTTG+TGG - chr5_2:1941940-1941959 Msa0748700:intron 35.0%
! TGAGGTACCACAAAATAGTA+AGG + chr5_2:1941950-1941969 None:intergenic 35.0%
GATGTCAGTGAATCATGTTA+TGG - chr5_2:1941971-1941990 Msa0748700:intron 35.0%
! ATAGGGATTTGGAGTAAACT+CGG + chr5_2:1942431-1942450 None:intergenic 35.0%
GCAGGTGGATGATTATAATA+GGG + chr5_2:1942448-1942467 None:intergenic 35.0%
TGCAGGTGGATGATTATAAT+AGG + chr5_2:1942449-1942468 None:intergenic 35.0%
TTGAATCATCAGTATGCAGA+TGG - chr5_2:1942511-1942530 Msa0748700:intron 35.0%
ACTTGAATCATCAGTACATG+TGG - chr5_2:1942539-1942558 Msa0748700:intron 35.0%
! ATAGTTGCTTTCTTAGACCA+TGG - chr5_2:1942601-1942620 Msa0748700:intron 35.0%
CTCAGCTAGTAGAGATTTAT+TGG + chr5_2:1942729-1942748 None:intergenic 35.0%
CAATAAATCTCTACTAGCTG+AGG - chr5_2:1942727-1942746 Msa0748700:intron 35.0%
TTCATATTTCTTTAGGTGCG+GGG - chr5_2:1942842-1942861 Msa0748700:intron 35.0%
TGCAATTGCTTTCTCAGAAA+TGG - chr5_2:1942991-1943010 Msa0748700:intron 35.0%
TCCCCAGTTATTAATCTTAC+AGG + chr5_2:1943079-1943098 None:intergenic 35.0%
!!! AACATCAATTTTTGGTGCTG+AGG + chr5_2:1943125-1943144 None:intergenic 35.0%
TCAGCACCAAAAATTGATGT+TGG - chr5_2:1943124-1943143 Msa0748700:intron 35.0%
! GCATCTCCAACATCAATTTT+TGG + chr5_2:1943133-1943152 None:intergenic 35.0%
TGACGCTCGACTAAATAATA+TGG - chr5_2:1943255-1943274 Msa0748700:CDS 35.0%
! ATGACATATAATTTGGGACG+AGG - chr5_2:1943534-1943553 Msa0748700:CDS 35.0%
! TGACATATAATTTGGGACGA+GGG - chr5_2:1943535-1943554 Msa0748700:CDS 35.0%
GTATCGAAGATACATAAAGG+AGG + chr5_2:1943834-1943853 None:intergenic 35.0%
TGTAGAGACAATGTACCTAA+GGG + chr5_2:1943867-1943886 None:intergenic 35.0%
ATGTAGAGACAATGTACCTA+AGG + chr5_2:1943868-1943887 None:intergenic 35.0%
TAGGTACATTGTCTCTACAT+AGG - chr5_2:1943868-1943887 Msa0748700:intron 35.0%
! TAAAGTGAGAGTATGTGCTA+AGG + chr5_2:1943974-1943993 None:intergenic 35.0%
GCATAGGTTCTCTTAGATAT+TGG - chr5_2:1944042-1944061 Msa0748700:intron 35.0%
! AATTTTATCCTTTCTGTGGC+AGG - chr5_2:1944208-1944227 Msa0748700:intron 35.0%
!! GGATTTATCTTTTGGTTGGA+AGG - chr5_2:1944289-1944308 Msa0748700:intron 35.0%
! GAAATCTAAGATGACTGTTG+AGG - chr5_2:1944316-1944335 Msa0748700:intron 35.0%
! GGACTTGAGTCTTTTCAAAT+AGG - chr5_2:1945169-1945188 Msa0748700:intron 35.0%
CTAGGTAGATGGTGAAATTA+TGG + chr5_2:1945307-1945326 None:intergenic 35.0%
AATTATAGGGTCTAGGTAGA+TGG + chr5_2:1945318-1945337 None:intergenic 35.0%
GTGGTAGCATTTCATATGAA+AGG + chr5_2:1945482-1945501 None:intergenic 35.0%
GACATATCTAGCTAGAATGT+TGG + chr5_2:1945516-1945535 None:intergenic 35.0%
AGAAAGTAAATCCCTTCCTA+AGG - chr5_2:1945551-1945570 Msa0748700:intron 35.0%
AATCTTAGCAACCTTAGGAA+GGG + chr5_2:1945565-1945584 None:intergenic 35.0%
TAATCTTAGCAACCTTAGGA+AGG + chr5_2:1945566-1945585 None:intergenic 35.0%
! TTAGCTGCATTTCTTTTCTC+AGG - chr5_2:1945624-1945643 Msa0748700:intron 35.0%
GAGAACAAGGTTAAGGAAAA+AGG - chr5_2:1945702-1945721 Msa0748700:intron 35.0%
! AAAAGGTACATACTAGACCA+TGG - chr5_2:1945719-1945738 Msa0748700:intron 35.0%
CACTTTAGACGGATAAAGAT+AGG - chr5_2:1946047-1946066 Msa0748700:intron 35.0%
TGTCTTCTGATCAACTTATC+TGG + chr5_2:1946152-1946171 None:intergenic 35.0%
ATGAAACTGATCACCAATGA+AGG + chr5_2:1946191-1946210 None:intergenic 35.0%
AGTTTGTCATAGTTTCCTCA+TGG - chr5_2:1946540-1946559 Msa0748700:intron 35.0%
GTTAAAATGATGAACCTCGA+TGG + chr5_2:1946756-1946775 None:intergenic 35.0%
AAAACAGTTAGGATGTTAGG+TGG - chr5_2:1946956-1946975 Msa0748700:intron 35.0%
TTCAAATACCAGTCTCACAT+TGG + chr5_2:1947006-1947025 None:intergenic 35.0%
ACTCAAATTAGCAGCAAACT+TGG + chr5_2:1947145-1947164 None:intergenic 35.0%
CTGCTAATTTGAGTGTGATT+GGG - chr5_2:1947151-1947170 Msa0748700:intron 35.0%
GAAGAGCTAATTAAGGAGTA+TGG - chr5_2:1947185-1947204 Msa0748700:five_prime_UTR 35.0%
!!! CTGGACTTCAAGTTCTTTTT+TGG - chr5_2:1947343-1947362 Msa0748700:five_prime_UTR 35.0%
!!! GACTTCAAGTTCTTTTTTGG+TGG - chr5_2:1947346-1947365 Msa0748700:five_prime_UTR 35.0%
!!! TTCAAGTTCTTTTTTGGTGG+TGG - chr5_2:1947349-1947368 Msa0748700:five_prime_UTR 35.0%
GACAACGCATAAAATATGCA+AGG + chr5_2:1947394-1947413 None:intergenic 35.0%
GTTTCCTCAATTGGGTCATT+AGG - chr5_2:1940266-1940285 Msa0748700:three_prime_UTR 40.0%
AAACCCTAATGACCCAATTG+AGG + chr5_2:1940273-1940292 None:intergenic 40.0%
! CAGTGGTGCCAATTAAAACA+AGG + chr5_2:1940422-1940441 None:intergenic 40.0%
CTGGAAATTAAGAGAAGCAG+CGG - chr5_2:1940533-1940552 Msa0748700:three_prime_UTR 40.0%
! AACAATGATGGGAGTAAGGT+TGG + chr5_2:1940568-1940587 None:intergenic 40.0%
GAGAATAGAAGAAACCCTTG+TGG + chr5_2:1940949-1940968 None:intergenic 40.0%
!!! ACAATTGTGTTTTAACGGCC+AGG - chr5_2:1941235-1941254 Msa0748700:intron 40.0%
!!! CAATTGTGTTTTAACGGCCA+GGG - chr5_2:1941236-1941255 Msa0748700:intron 40.0%
TTGTTATCCTTCATCTTCCC+TGG + chr5_2:1941256-1941275 None:intergenic 40.0%
!! TTAGGGGATTAGTCTAGTCT+AGG - chr5_2:1941313-1941332 Msa0748700:intron 40.0%
TGATTCACACGGAAAAGAGA+GGG + chr5_2:1941439-1941458 None:intergenic 40.0%
TTGATTCACACGGAAAAGAG+AGG + chr5_2:1941440-1941459 None:intergenic 40.0%
!!! CTTTTCTGGCTTGATTCACA+CGG + chr5_2:1941450-1941469 None:intergenic 40.0%
GTGTGAATCAAGCCAGAAAA+GGG - chr5_2:1941449-1941468 Msa0748700:intron 40.0%
CAAGTTTCTCAAGCTTGATG+AGG - chr5_2:1941897-1941916 Msa0748700:intron 40.0%
AAAGAAGAATCCGATCCATC+TGG - chr5_2:1941920-1941939 Msa0748700:intron 40.0%
CATGATTCACTGACATCTTG+AGG + chr5_2:1941968-1941987 None:intergenic 40.0%
CTATAAGCAGACTGCACATA+GGG + chr5_2:1942014-1942033 None:intergenic 40.0%
ACTATAAGCAGACTGCACAT+AGG + chr5_2:1942015-1942034 None:intergenic 40.0%
AATGATCTGACGATCACGAT+TGG + chr5_2:1942209-1942228 None:intergenic 40.0%
! TAGGGATTTGGAGTAAACTC+GGG + chr5_2:1942430-1942449 None:intergenic 40.0%
TCAGTACATGTGGCAAAATC+AGG - chr5_2:1942549-1942568 Msa0748700:intron 40.0%
!!! CATTCTTTGTTTTTCGGTGC+AGG - chr5_2:1942652-1942671 Msa0748700:intron 40.0%
GATTTATTGGAGAGCTTCAC+AGG + chr5_2:1942716-1942735 None:intergenic 40.0%
CTTTCTCAGAAATGGTAAGC+AGG - chr5_2:1942999-1943018 Msa0748700:intron 40.0%
TCTTACAGGTTGTGAGTTTC+TGG + chr5_2:1943065-1943084 None:intergenic 40.0%
ACTGGGGAATCAAGTGAATA+TGG - chr5_2:1943091-1943110 Msa0748700:intron 40.0%
!!! CAATTTTTGGTGCTGAGGAT+TGG + chr5_2:1943120-1943139 None:intergenic 40.0%
AAAGTTTGACTCAGCACAGA+TGG + chr5_2:1943208-1943227 None:intergenic 40.0%
ATCTGTGCTGAGTCAAACTT+TGG - chr5_2:1943207-1943226 Msa0748700:intron 40.0%
TCTGTGCTGAGTCAAACTTT+GGG - chr5_2:1943208-1943227 Msa0748700:intron 40.0%
! CAAAAAGGGGTCTTGTACAA+GGG + chr5_2:1944004-1944023 None:intergenic 40.0%
!! GGAATTAATGGGCTATGCAT+AGG - chr5_2:1944063-1944082 Msa0748700:intron 40.0%
GCATAGGCTCTCTTAGATAT+AGG - chr5_2:1944079-1944098 Msa0748700:intron 40.0%
! TCTAAGATGAATGTTGGGGA+TGG - chr5_2:1944257-1944276 Msa0748700:intron 40.0%
! TCTAAGATGACTGTTGAGGA+TGG - chr5_2:1944320-1944339 Msa0748700:intron 40.0%
AAACTCTGAATCAGCCAAGA+TGG + chr5_2:1944505-1944524 None:intergenic 40.0%
GTGGGAACATGTTAAAGTGA+GGG + chr5_2:1945003-1945022 None:intergenic 40.0%
AGTGGGAACATGTTAAAGTG+AGG + chr5_2:1945004-1945023 None:intergenic 40.0%
! TTGAAGCATGGGTTATGCAT+AGG - chr5_2:1945041-1945060 Msa0748700:intron 40.0%
GCACTATCTGTAGTCAATGT+GGG - chr5_2:1945148-1945167 Msa0748700:intron 40.0%
TGGCTAGAATTATAGGGTCT+AGG + chr5_2:1945325-1945344 None:intergenic 40.0%
CAGCTAAGAGAACAAGGTTA+AGG - chr5_2:1945695-1945714 Msa0748700:intron 40.0%
CAGCTTAGCTTCACTTTAGA+CGG - chr5_2:1946036-1946055 Msa0748700:intron 40.0%
ATGTAATTCAACCCACTGAG+CGG - chr5_2:1946374-1946393 Msa0748700:intron 40.0%
GTTGTATATTCATCGGATCC+TGG - chr5_2:1946423-1946442 Msa0748700:intron 40.0%
AATTGGCAATTTGGAAAGCC+AGG + chr5_2:1946444-1946463 None:intergenic 40.0%
!! AAGTTATTCTGAGGCATGTC+TGG - chr5_2:1946709-1946728 Msa0748700:intron 40.0%
TGATGAAAACGATTCCATCG+AGG - chr5_2:1946739-1946758 Msa0748700:intron 40.0%
!! GGTAAGCAATGGGTTAACAT+TGG + chr5_2:1946985-1947004 None:intergenic 40.0%
GTCTCACATTGGTAAGCAAT+GGG + chr5_2:1946995-1947014 None:intergenic 40.0%
AGTCTCACATTGGTAAGCAA+TGG + chr5_2:1946996-1947015 None:intergenic 40.0%
ATTGCTTACCAATGTGAGAC+TGG - chr5_2:1946995-1947014 Msa0748700:intron 40.0%
GCTGCTAATTTGAGTGTGAT+TGG - chr5_2:1947150-1947169 Msa0748700:intron 40.0%
CTAATTTGAGTGTGATTGGG+TGG - chr5_2:1947154-1947173 Msa0748700:intron 40.0%
GGAACAGGAAGAGCTAATTA+AGG - chr5_2:1947178-1947197 Msa0748700:intron 40.0%
!!! AGTTCTTTTTTGGTGGTGGT+CGG - chr5_2:1947353-1947372 Msa0748700:five_prime_UTR 40.0%
CATAAAATATGCAAGGTCCG+GGG + chr5_2:1947387-1947406 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + chr5_2:1947388-1947407 None:intergenic 40.0%
CGCATAAAATATGCAAGGTC+CGG + chr5_2:1947389-1947408 None:intergenic 40.0%
AAGAGAAGCAGCGGAATTCA+TGG - chr5_2:1940542-1940561 Msa0748700:exon 45.0%
! TTTTGTCTTTCGCGCCACAA+GGG - chr5_2:1940932-1940951 Msa0748700:intron 45.0%
AACGGTGAGAGAATGTGTGT+AGG + chr5_2:1940976-1940995 None:intergenic 45.0%
GATTCACACGGAAAAGAGAG+GGG + chr5_2:1941438-1941457 None:intergenic 45.0%
CGTGTGAATCAAGCCAGAAA+AGG - chr5_2:1941448-1941467 Msa0748700:intron 45.0%
GTAAGGTCTTCCAGATGGAT+CGG + chr5_2:1941933-1941952 None:intergenic 45.0%
TGTGGCAGCATAGGATTGTT+TGG + chr5_2:1942083-1942102 None:intergenic 45.0%
ACAATCCTATGCTGCCACAT+TGG - chr5_2:1942084-1942103 Msa0748700:intron 45.0%
CAATCCTATGCTGCCACATT+GGG - chr5_2:1942085-1942104 Msa0748700:intron 45.0%
! ACGATCACGATTGGTTGACA+AGG + chr5_2:1942200-1942219 None:intergenic 45.0%
TATAATCATCCACCTGCAGC+TGG - chr5_2:1942451-1942470 Msa0748700:intron 45.0%
GGTTAGCAGTTACTAGAGGA+TGG - chr5_2:1942869-1942888 Msa0748700:intron 45.0%
CTGTGCTGAGTCAAACTTTG+GGG - chr5_2:1943209-1943228 Msa0748700:intron 45.0%
! CCAAAAAGGGGTCTTGTACA+AGG + chr5_2:1944005-1944024 None:intergenic 45.0%
! CCTTGTACAAGACCCCTTTT+TGG - chr5_2:1944002-1944021 Msa0748700:intron 45.0%
CCATGCTTCAAGCCAAAAAG+GGG + chr5_2:1944017-1944036 None:intergenic 45.0%
CCCATGCTTCAAGCCAAAAA+GGG + chr5_2:1944018-1944037 None:intergenic 45.0%
!!! CCCTTTTTGGCTTGAAGCAT+GGG - chr5_2:1944015-1944034 Msa0748700:intron 45.0%
! TTGAAGCATGGGCTATGCAT+AGG - chr5_2:1944026-1944045 Msa0748700:intron 45.0%
AGGAAAATCCTGCCACAGAA+AGG + chr5_2:1944219-1944238 None:intergenic 45.0%
TGTTGAGGATGGTGAGAGTA+AGG - chr5_2:1944331-1944350 Msa0748700:intron 45.0%
! CTTGGCTGATTCAGAGTTTG+AGG - chr5_2:1944506-1944525 Msa0748700:intron 45.0%
ACCCCATTTGTAATCACCGT+GGG - chr5_2:1944903-1944922 Msa0748700:intron 45.0%
TCCCACGGTGATTACAAATG+GGG + chr5_2:1944907-1944926 None:intergenic 45.0%
CTCCCACGGTGATTACAAAT+GGG + chr5_2:1944908-1944927 None:intergenic 45.0%
TCTCCCACGGTGATTACAAA+TGG + chr5_2:1944909-1944928 None:intergenic 45.0%
ACCGTGGGAGAAAAACACAA+GGG - chr5_2:1944918-1944937 Msa0748700:intron 45.0%
! ACCCTTGTGTTTTTCTCCCA+CGG + chr5_2:1944922-1944941 None:intergenic 45.0%
TCCCACTTATAAGACCCCTA+TGG - chr5_2:1945017-1945036 Msa0748700:intron 45.0%
! GCCATAGGGGTCTTATAAGT+GGG + chr5_2:1945021-1945040 None:intergenic 45.0%
! AGCCATAGGGGTCTTATAAG+TGG + chr5_2:1945022-1945041 None:intergenic 45.0%
AACCCATGCTTCAAGCCATA+GGG + chr5_2:1945035-1945054 None:intergenic 45.0%
TAACCCATGCTTCAAGCCAT+AGG + chr5_2:1945036-1945055 None:intergenic 45.0%
! CCTTATGAGTCGGTCTTATG+AGG + chr5_2:1945094-1945113 None:intergenic 45.0%
! CCTCATAAGACCGACTCATA+AGG - chr5_2:1945091-1945110 Msa0748700:CDS 45.0%
! TAAGACCGACTCATAAGGTG+AGG - chr5_2:1945096-1945115 Msa0748700:CDS 45.0%
ACGTTCCTCACCTTATGAGT+CGG + chr5_2:1945104-1945123 None:intergenic 45.0%
GGCACTATCTGTAGTCAATG+TGG - chr5_2:1945147-1945166 Msa0748700:intron 45.0%
GGGAATCAGCTAAGAGAACA+AGG - chr5_2:1945689-1945708 Msa0748700:intron 45.0%
! CGTCTAAAGTGAAGCTAAGC+TGG + chr5_2:1946038-1946057 None:intergenic 45.0%
!! GCTCAGTGGGTTGAATTACA+TGG + chr5_2:1946375-1946394 None:intergenic 45.0%
TCTTCACGTTCTTGCTGCTA+AGG + chr5_2:1946632-1946651 None:intergenic 45.0%
ATTTGAGTGTGATTGGGTGG+TGG - chr5_2:1947157-1947176 Msa0748700:intron 45.0%
CAGTTACAATGTCAAGCAGC+AGG + chr5_2:1947245-1947264 None:intergenic 45.0%
! CTGCTGCTTGACATTGTAAC+TGG - chr5_2:1947243-1947262 Msa0748700:five_prime_UTR 45.0%
!!! GTTCTTTTTTGGTGGTGGTC+GGG - chr5_2:1947354-1947373 Msa0748700:five_prime_UTR 45.0%
!!! TTCTTTTTTGGTGGTGGTCG+GGG - chr5_2:1947355-1947374 Msa0748700:five_prime_UTR 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + chr5_2:1947416-1947435 None:intergenic 45.0%
!! ATTTATTTATAAACAAAAAT+AGG + chr5_2:1940861-1940880 None:intergenic 5.0%
!! ATATAAAATTGAAAAAATAA+GGG + chr5_2:1946781-1946800 None:intergenic 5.0%
AATTGGCACCACTGCGAAAG+TGG - chr5_2:1940428-1940447 Msa0748700:three_prime_UTR 50.0%
GAGGAGCTAGCTAGCAACTT+CGG - chr5_2:1940450-1940469 Msa0748700:three_prime_UTR 50.0%
AACTTCGGTGGCTGTTCTTC+AGG - chr5_2:1940465-1940484 Msa0748700:three_prime_UTR 50.0%
! CTTTTGTCTTTCGCGCCACA+AGG - chr5_2:1940931-1940950 Msa0748700:intron 50.0%
TTAACGGCCAGGGAAGATGA+AGG - chr5_2:1941246-1941265 Msa0748700:intron 50.0%
TGCATAGGTGAAGCCCAATG+TGG + chr5_2:1942101-1942120 None:intergenic 50.0%
ACATTGGGCTTCACCTATGC+AGG - chr5_2:1942100-1942119 Msa0748700:CDS 50.0%
ATGTAAGAACCAGCTGCAGG+TGG + chr5_2:1942463-1942482 None:intergenic 50.0%
CTCATGTAAGAACCAGCTGC+AGG + chr5_2:1942466-1942485 None:intergenic 50.0%
! CAGGTGTGTTGTTCTTGCCA+TGG + chr5_2:1942621-1942640 None:intergenic 50.0%
TATTTCTTTAGGTGCGGGGC+TGG - chr5_2:1942846-1942865 Msa0748700:intron 50.0%
ATTTCTTTAGGTGCGGGGCT+GGG - chr5_2:1942847-1942866 Msa0748700:intron 50.0%
! CTGGGGTTAGCAGTTACTAG+AGG - chr5_2:1942865-1942884 Msa0748700:intron 50.0%
! CTGAGTCAAACTTTGGGGAC+AGG - chr5_2:1943214-1943233 Msa0748700:intron 50.0%
!!! CCCCTTTTTGGCTTGAAGCA+TGG - chr5_2:1944014-1944033 Msa0748700:intron 50.0%
GCCCATGCTTCAAGCCAAAA+AGG + chr5_2:1944019-1944038 None:intergenic 50.0%
TGTTGGGGATGGTGAGAACA+AGG - chr5_2:1944268-1944287 Msa0748700:intron 50.0%
GAGTTTGAGGACAGTCGTCA+AGG - chr5_2:1944519-1944538 Msa0748700:intron 50.0%
GACCCCATTTGTAATCACCG+TGG - chr5_2:1944902-1944921 Msa0748700:intron 50.0%
CACCGTGGGAGAAAAACACA+AGG - chr5_2:1944917-1944936 Msa0748700:intron 50.0%
ACCCCTATGGCTTGAAGCAT+GGG - chr5_2:1945030-1945049 Msa0748700:intron 50.0%
ACCCATGCTTCAAGCCATAG+GGG + chr5_2:1945034-1945053 None:intergenic 50.0%
GCATAGGTTCTCGCAGACAT+TGG - chr5_2:1945057-1945076 Msa0748700:intron 50.0%
CGTGTGGCAACTGATCTTGT+AGG - chr5_2:1945371-1945390 Msa0748700:CDS 50.0%
GGTACATACTAGACCATGGC+TGG - chr5_2:1945723-1945742 Msa0748700:intron 50.0%
AAGCTAAGCTGGCAGAGTTC+TGG + chr5_2:1946027-1946046 None:intergenic 50.0%
CCTCATGAGCTTAGCTCAGT+TGG + chr5_2:1947421-1947440 None:intergenic 50.0%
CCAACTGAGCTAAGCTCATG+AGG - chr5_2:1947418-1947437 Msa0748700:five_prime_UTR 50.0%
CTGAGCTAAGCTCATGAGGA+CGG - chr5_2:1947422-1947441 Msa0748700:five_prime_UTR 50.0%
TAGCTCCTCCACTTTCGCAG+TGG + chr5_2:1940439-1940458 None:intergenic 55.0%
GAGCTAGCTAGCAACTTCGG+TGG - chr5_2:1940453-1940472 Msa0748700:three_prime_UTR 55.0%
GTGGCTGTTCTTCAGGACGA+CGG - chr5_2:1940472-1940491 Msa0748700:three_prime_UTR 55.0%
TGTTCTTCAGGACGACGGTG+TGG - chr5_2:1940477-1940496 Msa0748700:three_prime_UTR 55.0%
GTTCTTCAGGACGACGGTGT+GGG - chr5_2:1940478-1940497 Msa0748700:three_prime_UTR 55.0%
GAAGCCCAATGTGGCAGCAT+AGG + chr5_2:1942092-1942111 None:intergenic 55.0%
TTTCTTTAGGTGCGGGGCTG+GGG - chr5_2:1942848-1942867 Msa0748700:intron 55.0%
! AACTTTGGGGACAGGCGTCA+AGG - chr5_2:1943222-1943241 Msa0748700:intron 55.0%
GACCCCTATGGCTTGAAGCA+TGG - chr5_2:1945029-1945048 Msa0748700:intron 55.0%
AGTCTGCTCTTCCGCTCAGT+GGG + chr5_2:1946388-1946407 None:intergenic 55.0%
AAGTCTGCTCTTCCGCTCAG+TGG + chr5_2:1946389-1946408 None:intergenic 55.0%
!! GTGTGATTGGGTGGTGGAAC+AGG - chr5_2:1947163-1947182 Msa0748700:intron 55.0%
TGGCACCACTGCGAAAGTGG+AGG - chr5_2:1940431-1940450 Msa0748700:three_prime_UTR 60.0%
CCATGGCTGGTGCAATGCAG+CGG - chr5_2:1945736-1945755 Msa0748700:intron 60.0%
CATGGCTGGTGCAATGCAGC+GGG - chr5_2:1945737-1945756 Msa0748700:intron 60.0%
CCGCTGCATTGCACCAGCCA+TGG + chr5_2:1945739-1945758 None:intergenic 65.0%
GGTGGTCGGGGTTTGAACCC+CGG - chr5_2:1947367-1947386 Msa0748700:five_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 1940260 1947552 1940260 ID=Msa0748700;Name=Msa0748700
chr5_2 mRNA 1940260 1947552 1940260 ID=Msa0748700-mRNA-1;Parent=Msa0748700;Name=Msa0748700-mRNA-1;_AED=0.06;_eAED=0.06;_QI=401|0.77|0.9|1|0.77|0.8|10|299|328
chr5_2 exon 1940260 1940627 1940260 ID=Msa0748700-mRNA-1:exon:574;Parent=Msa0748700-mRNA-1
chr5_2 exon 1941052 1941174 1941052 ID=Msa0748700-mRNA-1:exon:573;Parent=Msa0748700-mRNA-1
chr5_2 exon 1942089 1942166 1942089 ID=Msa0748700-mRNA-1:exon:572;Parent=Msa0748700-mRNA-1
chr5_2 exon 1943227 1943315 1943227 ID=Msa0748700-mRNA-1:exon:571;Parent=Msa0748700-mRNA-1
chr5_2 exon 1943471 1943582 1943471 ID=Msa0748700-mRNA-1:exon:570;Parent=Msa0748700-mRNA-1
chr5_2 exon 1944602 1944826 1944602 ID=Msa0748700-mRNA-1:exon:569;Parent=Msa0748700-mRNA-1
chr5_2 exon 1945064 1945138 1945064 ID=Msa0748700-mRNA-1:exon:568;Parent=Msa0748700-mRNA-1
chr5_2 exon 1945242 1945397 1945242 ID=Msa0748700-mRNA-1:exon:567;Parent=Msa0748700-mRNA-1
chr5_2 exon 1945839 1945931 1945839 ID=Msa0748700-mRNA-1:exon:566;Parent=Msa0748700-mRNA-1
chr5_2 exon 1947185 1947552 1947185 ID=Msa0748700-mRNA-1:exon:565;Parent=Msa0748700-mRNA-1
chr5_2 five_prime_UTR 1947185 1947552 1947185 ID=Msa0748700-mRNA-1:five_prime_utr;Parent=Msa0748700-mRNA-1
chr5_2 five_prime_UTR 1945899 1945931 1945899 ID=Msa0748700-mRNA-1:five_prime_utr;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1945839 1945898 1945839 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1945242 1945397 1945242 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1945064 1945138 1945064 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1944602 1944826 1944602 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1943471 1943582 1943471 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1943227 1943315 1943227 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1942089 1942166 1942089 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1941052 1941174 1941052 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 CDS 1940559 1940627 1940559 ID=Msa0748700-mRNA-1:cds;Parent=Msa0748700-mRNA-1
chr5_2 three_prime_UTR 1940260 1940558 1940260 ID=Msa0748700-mRNA-1:three_prime_utr;Parent=Msa0748700-mRNA-1
Gene Sequence

>Msa0748700

ATGAGGAAAGAAGAATCCGATCCATCTGGAAGACCTTACTATTTTGTGGTACCTCAAGATGCTTGTTACAATCCCGAGTTTACTCCAAATCCCTATTATAATCATCCACCTGCAGCTGGTTCTTACATGAGTCATCAGTCTGAAGCTGATTCTTACTTGAATCATCAGTATGCAGATGGTTCTTACTTGAATCATCAGTACATGTGGCAAAATCAGGAAAACAACACACTGCTTCAATCTAATGCGCTACATGATCCTGTGAAGCTCTCCAATAAATCTCTACTAGCTGAGGATGCTGCAATTGCTTTCTCAGAAATGGTAAGCAGGAATATTGTCAAAAGTAACCCAGATTCCAACCAATTATTTACCAGAAACTCACAACCTGTAAGATTAATAACTGGGGAATCAAGTGAATATGGAAACCAATCCTCAGCACCAAAAATTGATGTTGGAGATGCTGATCGAGTTGTGTTAGTGAACCAGTATTACAACAATTTCTTTGTAGAAAATCCATCTGATTTTCCTATATGTAAGAAGCAGATATCTAAGATGAATGTTGGGGATGGTGAGAACAAGGATTTATCTTTTGGTTGGAAGGAGCAGAAATCTAAGATGACTGTTGAGGATGAAAAACCATCTTGGCTGATTCAGAGTTTGAGGACAGTCGTCAAGGAATCTGATTCTGATGTTGACGCTGATGCTCAACTAAAATATATGGAAGCTGATGATATTAGAAAAGAAAGAAAAAGACAATCAAACAGGGAATCAGCTAAGAGAACAAGGTTAAGGAAAAAGCAAGAACGTGAAGATCGTACAAAGATAGACACTCTTAATGAAGAAATTGCTGTCCTAACAAAACAACTAAAAAGTTATTCTGAGGCATGTCTGGAGCTCGCTGATGAAAACGATTCCATCGAGGAAGAGCTAATTAAGGAGTATGGACTAGAATCAATTGCAGATCTATTGCTCATGAAGCCTGCTGCTTGA
Protein sequence

>Msa0748700

MRKEESDPSGRPYYFVVPQDACYNPEFTPNPYYNHPPAAGSYMSHQSEADSYLNHQYADGSYLNHQYMWQNQENNTLLQSNALHDPVKLSNKSLLAEDAAIAFSEMVSRNIVKSNPDSNQLFTRNSQPVRLITGESSEYGNQSSAPKIDVGDADRVVLVNQYYNNFFVENPSDFPICKKQISKMNVGDGENKDLSFGWKEQKSKMTVEDEKPSWLIQSLRTVVKESDSDVDADAQLKYMEADDIRKERKRQSNRESAKRTRLRKKQEREDRTKIDTLNEEIAVLTKQLKSYSEACLELADENDSIEEELIKEYGLESIADLLLMKPAA*