Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107230 | XP_013449023.1 | 92.411 | 224 | 17 | 0 | 1 | 224 | 1 | 224 | 4.28e-148 | 421 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107230 | sp|P32110|GSTX6_SOYBN | 72.444 | 225 | 61 | 1 | 1 | 224 | 1 | 225 | 2.18e-115 | 331 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107230 | A0A072UB35 | 92.411 | 224 | 17 | 0 | 1 | 224 | 1 | 224 | 2.05e-148 | 421 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0037720 | Msa1107230 | 0.819976 | 8.751070e-53 | -8.615850e-47 |
| Msa0083240 | Msa1107230 | 0.828103 | 1.082503e-54 | -8.615850e-47 |
| Msa0094710 | Msa1107230 | 0.824611 | 7.349803e-54 | -8.615850e-47 |
| Msa0611060 | Msa1107230 | 0.808288 | 3.334476e-50 | -8.615850e-47 |
| Msa0695140 | Msa1107230 | 0.800674 | 1.290007e-48 | -8.615850e-47 |
| Msa0713060 | Msa1107230 | 0.831024 | 2.109494e-55 | -8.615850e-47 |
| Msa0719730 | Msa1107230 | 0.815047 | 1.129142e-51 | -8.615850e-47 |
| Msa0744640 | Msa1107230 | 0.806299 | 8.798837e-50 | -8.615850e-47 |
| Msa0802740 | Msa1107230 | 0.801319 | 9.521456e-49 | -8.615850e-47 |
| Msa0829990 | Msa1107230 | 0.818627 | 1.775705e-52 | -8.615850e-47 |
| Msa0841730 | Msa1107230 | 0.804847 | 1.774694e-49 | -8.615850e-47 |
| Msa0129640 | Msa1107230 | 0.849198 | 3.771373e-60 | -8.615850e-47 |
| Msa0174100 | Msa1107230 | 0.808230 | 3.429426e-50 | -8.615850e-47 |
| Msa0186240 | Msa1107230 | 0.811340 | 7.352998e-51 | -8.615850e-47 |
| Msa0366810 | Msa1107230 | 0.826266 | 2.980566e-54 | -8.615850e-47 |
| Msa0402800 | Msa1107230 | 0.800480 | 1.413166e-48 | -8.615850e-47 |
| Msa0405200 | Msa1107230 | 0.819193 | 1.320527e-52 | -8.615850e-47 |
| Msa0414050 | Msa1107230 | 0.801132 | 1.040144e-48 | -8.615850e-47 |
| Msa0434300 | Msa1107230 | 0.805877 | 1.079766e-49 | -8.615850e-47 |
| Msa0434400 | Msa1107230 | 0.814185 | 1.752467e-51 | -8.615850e-47 |
| Msa0449500 | Msa1107230 | 0.800092 | 1.695064e-48 | -8.615850e-47 |
| Msa0459150 | Msa1107230 | 0.810340 | 1.210345e-50 | -8.615850e-47 |
| Msa1011250 | Msa1107230 | 0.822869 | 1.880643e-53 | -8.615850e-47 |
| Msa1016960 | Msa1107230 | 0.810821 | 9.524714e-51 | -8.615850e-47 |
| Msa1058200 | Msa1107230 | 0.831265 | 1.841518e-55 | -8.615850e-47 |
| Msa1061970 | Msa1107230 | 0.801747 | 7.781919e-49 | -8.615850e-47 |
| Msa1062060 | Msa1107230 | 0.824151 | 9.428508e-54 | -8.615850e-47 |
| Msa1062070 | Msa1107230 | 0.881357 | 2.566375e-70 | -8.615850e-47 |
| Msa1062080 | Msa1107230 | 0.825116 | 5.587332e-54 | -8.615850e-47 |
| Msa1074210 | Msa1107230 | 0.812263 | 4.629326e-51 | -8.615850e-47 |
| Msa0267700 | Msa1107230 | 0.834933 | 2.249589e-56 | -8.615850e-47 |
| Msa0306310 | Msa1107230 | 0.801045 | 1.083344e-48 | -8.615850e-47 |
| Msa0319680 | Msa1107230 | 0.809124 | 2.209954e-50 | -8.615850e-47 |
| Msa0345050 | Msa1107230 | 0.839840 | 1.245474e-57 | -8.615850e-47 |
| Msa1107230 | Msa1107250 | 0.814595 | 1.422027e-51 | -8.615850e-47 |
| Msa1107230 | Msa1114680 | 0.804352 | 2.250915e-49 | -8.615850e-47 |
| Msa1107230 | Msa1132980 | 0.802206 | 6.262841e-49 | -8.615850e-47 |
| Msa1107230 | Msa1150740 | 0.814315 | 1.639823e-51 | -8.615850e-47 |
| Msa1107230 | Msa1150750 | 0.884879 | 1.314774e-71 | -8.615850e-47 |
| Msa1107230 | Msa1154240 | 0.808126 | 3.609353e-50 | -8.615850e-47 |
| Msa1107230 | Msa1174280 | 0.802451 | 5.574842e-49 | -8.615850e-47 |
| Msa1107230 | Msa1199870 | 0.822106 | 2.828092e-53 | -8.615850e-47 |
| Msa1107230 | Msa1202110 | 0.823416 | 1.401528e-53 | -8.615850e-47 |
| Msa1107230 | Msa1203810 | 0.813954 | 1.970778e-51 | -8.615850e-47 |
| Msa1107230 | Msa1208990 | 0.822560 | 2.219090e-53 | -8.615850e-47 |
| Msa1107230 | Msa1212470 | 0.806482 | 8.050067e-50 | -8.615850e-47 |
| Msa1107230 | Msa1217260 | 0.849086 | 4.051043e-60 | -8.615850e-47 |
| Msa1107230 | Msa1225030 | 0.802341 | 5.873819e-49 | -8.615850e-47 |
| Msa1107230 | Msa1252810 | 0.827999 | 1.146860e-54 | -8.615850e-47 |
| Msa1107230 | Msa1254870 | 0.825795 | 3.858506e-54 | -8.615850e-47 |
| Msa1107230 | Msa1261960 | 0.801692 | 7.987393e-49 | -8.615850e-47 |
| Msa1107230 | Msa1279060 | 0.806362 | 8.533561e-50 | -8.615850e-47 |
| Msa1107230 | Msa1299910 | 0.807492 | 4.922744e-50 | -8.615850e-47 |
| Msa1107230 | Msa1302340 | 0.817533 | 3.138918e-52 | -8.615850e-47 |
| Msa1107230 | Msa1328430 | 0.824548 | 7.604785e-54 | -8.615850e-47 |
| Msa1107230 | Msa1329900 | 0.819271 | 1.268081e-52 | -8.615850e-47 |
| Msa1107230 | Msa1379020 | 0.803976 | 2.695736e-49 | -8.615850e-47 |
| Msa1107230 | Msa1412410 | 0.850125 | 2.077781e-60 | -8.615850e-47 |
| Msa1107230 | Msa1427860 | 0.857118 | 2.029795e-62 | -8.615850e-47 |
| Msa1107230 | Msa1435320 | 0.812381 | 4.362057e-51 | -8.615850e-47 |
| Msa1107230 | Msa1443400 | 0.811695 | 6.155118e-51 | -8.615850e-47 |
| Msa1107230 | Msa1448040 | 0.811846 | 5.706170e-51 | -8.615850e-47 |
| Msa1107230 | Msa1465860 | 0.836973 | 6.835913e-57 | -8.615850e-47 |
| Msa0488580 | Msa1107230 | 0.812074 | 5.090624e-51 | -8.615850e-47 |
| Msa0497120 | Msa1107230 | 0.807053 | 6.099684e-50 | -8.615850e-47 |
| Msa0497680 | Msa1107230 | 0.822100 | 2.837828e-53 | -8.615850e-47 |
| Msa0497690 | Msa1107230 | 0.800284 | 1.549283e-48 | -8.615850e-47 |
| Msa0497860 | Msa1107230 | 0.806610 | 7.566065e-50 | -8.615850e-47 |
| Msa0505640 | Msa1107230 | 0.820551 | 6.461686e-53 | -8.615850e-47 |
| Msa0522140 | Msa1107230 | 0.805323 | 1.410856e-49 | -8.615850e-47 |
| Msa0522170 | Msa1107230 | 0.810092 | 1.369035e-50 | -8.615850e-47 |
| Msa0573950 | Msa1107230 | 0.809883 | 1.517992e-50 | -8.615850e-47 |
| Msa0873910 | Msa1107230 | 0.805805 | 1.118197e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107230 | MtrunA17_Chr7g0240531 | 92.411 | 224 | 17 | 0 | 1 | 224 | 1 | 224 | 3.94e-152 | 421 |
| Msa1107230 | MtrunA17_Chr7g0240551 | 91.964 | 224 | 18 | 0 | 1 | 224 | 1 | 224 | 2.33e-151 | 419 |
| Msa1107230 | MtrunA17_Chr7g0240541 | 87.500 | 224 | 28 | 0 | 1 | 224 | 1 | 224 | 3.15e-143 | 399 |
| Msa1107230 | MtrunA17_Chr7g0240561 | 82.143 | 224 | 40 | 0 | 1 | 224 | 1 | 224 | 2.56e-134 | 376 |
| Msa1107230 | MtrunA17_Chr7g0240581 | 79.911 | 224 | 45 | 0 | 1 | 224 | 1 | 224 | 7.91e-134 | 375 |
| Msa1107230 | MtrunA17_Chr7g0240511 | 81.696 | 224 | 36 | 1 | 1 | 224 | 1 | 219 | 5.31e-131 | 367 |
| Msa1107230 | MtrunA17_Chr7g0240521 | 77.778 | 225 | 49 | 1 | 1 | 224 | 8 | 232 | 1.07e-116 | 332 |
| Msa1107230 | MtrunA17_Chr7g0240631 | 69.507 | 223 | 68 | 0 | 1 | 223 | 1 | 223 | 3.34e-116 | 330 |
| Msa1107230 | MtrunA17_Chr7g0240641 | 69.058 | 223 | 69 | 0 | 1 | 223 | 1 | 223 | 2.28e-113 | 323 |
| Msa1107230 | MtrunA17_Chr7g0240681 | 70.667 | 225 | 65 | 1 | 1 | 224 | 1 | 225 | 1.00e-112 | 322 |
| Msa1107230 | MtrunA17_Chr7g0240611 | 68.161 | 223 | 67 | 1 | 1 | 223 | 1 | 219 | 1.50e-107 | 308 |
| Msa1107230 | MtrunA17_Chr4g0008791 | 63.677 | 223 | 81 | 0 | 1 | 223 | 1 | 223 | 7.52e-105 | 301 |
| Msa1107230 | MtrunA17_Chr7g0240691 | 64.384 | 219 | 77 | 1 | 6 | 223 | 36 | 254 | 8.64e-101 | 293 |
| Msa1107230 | MtrunA17_Chr7g0240671 | 64.251 | 207 | 70 | 1 | 8 | 214 | 5 | 207 | 1.13e-93 | 273 |
| Msa1107230 | MtrunA17_Chr4g0008781 | 60.930 | 215 | 82 | 2 | 2 | 215 | 3 | 216 | 4.53e-92 | 269 |
| Msa1107230 | MtrunA17_Chr7g0240651 | 64.414 | 222 | 75 | 1 | 1 | 222 | 1 | 218 | 6.13e-91 | 266 |
| Msa1107230 | MtrunA17_Chr7g0240661 | 65.421 | 214 | 70 | 1 | 1 | 214 | 1 | 210 | 1.79e-88 | 260 |
| Msa1107230 | MtrunA17_Chr6g0483141 | 48.077 | 208 | 106 | 2 | 7 | 213 | 3 | 209 | 1.73e-64 | 199 |
| Msa1107230 | MtrunA17_Chr1g0196771 | 46.364 | 220 | 113 | 3 | 6 | 222 | 2 | 219 | 2.26e-62 | 194 |
| Msa1107230 | MtrunA17_Chr3g0132581 | 46.818 | 220 | 115 | 2 | 5 | 223 | 3 | 221 | 1.02e-60 | 189 |
| Msa1107230 | MtrunA17_Chr8g0379581 | 43.779 | 217 | 120 | 2 | 4 | 219 | 2 | 217 | 8.79e-60 | 187 |
| Msa1107230 | MtrunA17_Chr1g0212301 | 43.119 | 218 | 121 | 2 | 7 | 221 | 3 | 220 | 7.88e-57 | 179 |
| Msa1107230 | MtrunA17_Chr8g0379561 | 43.779 | 217 | 119 | 3 | 1 | 216 | 1 | 215 | 5.40e-56 | 177 |
| Msa1107230 | MtrunA17_Chr5g0417011 | 42.342 | 222 | 120 | 3 | 1 | 215 | 1 | 221 | 7.55e-55 | 175 |
| Msa1107230 | MtrunA17_Chr1g0196691 | 42.273 | 220 | 124 | 1 | 7 | 223 | 28 | 247 | 3.18e-52 | 169 |
| Msa1107230 | MtrunA17_Chr5g0415411 | 41.228 | 228 | 124 | 3 | 1 | 220 | 1 | 226 | 9.27e-51 | 164 |
| Msa1107230 | MtrunA17_Chr4g0029341 | 42.056 | 214 | 118 | 3 | 6 | 215 | 3 | 214 | 1.14e-50 | 164 |
| Msa1107230 | MtrunA17_Chr1g0196661 | 40.724 | 221 | 127 | 2 | 7 | 224 | 3 | 222 | 2.96e-49 | 160 |
| Msa1107230 | MtrunA17_Chr8g0363751 | 42.009 | 219 | 119 | 3 | 5 | 215 | 3 | 221 | 9.68e-49 | 159 |
| Msa1107230 | MtrunA17_Chr1g0196721 | 40.183 | 219 | 127 | 2 | 8 | 223 | 3 | 220 | 1.18e-48 | 159 |
| Msa1107230 | MtrunA17_Chr1g0196711 | 38.914 | 221 | 131 | 2 | 7 | 224 | 3 | 222 | 9.77e-48 | 156 |
| Msa1107230 | MtrunA17_Chr2g0312771 | 40.191 | 209 | 120 | 5 | 6 | 212 | 3 | 208 | 3.79e-45 | 150 |
| Msa1107230 | MtrunA17_Chr2g0312731 | 40.777 | 206 | 117 | 5 | 6 | 209 | 3 | 205 | 8.34e-45 | 149 |
| Msa1107230 | MtrunA17_Chr3g0107731 | 43.216 | 199 | 108 | 5 | 16 | 212 | 18 | 213 | 1.27e-44 | 149 |
| Msa1107230 | MtrunA17_Chr2g0312751 | 39.713 | 209 | 121 | 5 | 6 | 212 | 3 | 208 | 1.94e-44 | 148 |
| Msa1107230 | MtrunA17_Chr3g0107741 | 40.758 | 211 | 120 | 5 | 4 | 212 | 6 | 213 | 1.20e-42 | 143 |
| Msa1107230 | MtrunA17_Chr2g0312791 | 41.176 | 204 | 116 | 4 | 6 | 207 | 3 | 204 | 5.67e-42 | 142 |
| Msa1107230 | MtrunA17_Chr4g0069471 | 45.455 | 187 | 94 | 5 | 3 | 186 | 21 | 202 | 1.55e-41 | 140 |
| Msa1107230 | MtrunA17_Chr2g0312781 | 38.278 | 209 | 124 | 5 | 1 | 207 | 15 | 220 | 1.84e-41 | 140 |
| Msa1107230 | MtrunA17_Chr8g0357211 | 40.670 | 209 | 114 | 6 | 16 | 218 | 13 | 217 | 2.85e-41 | 140 |
| Msa1107230 | MtrunA17_Chr8g0357241 | 40.670 | 209 | 114 | 6 | 16 | 218 | 13 | 217 | 5.28e-41 | 139 |
| Msa1107230 | MtrunA17_Chr2g0312811 | 39.151 | 212 | 120 | 7 | 6 | 212 | 3 | 210 | 2.10e-39 | 135 |
| Msa1107230 | MtrunA17_Chr2g0312721 | 37.619 | 210 | 124 | 5 | 6 | 212 | 3 | 208 | 3.96e-39 | 134 |
| Msa1107230 | MtrunA17_Chr5g0433801 | 38.679 | 212 | 125 | 4 | 3 | 212 | 2 | 210 | 8.60e-39 | 133 |
| Msa1107230 | MtrunA17_Chr2g0312691 | 37.037 | 216 | 131 | 4 | 7 | 220 | 4 | 216 | 2.73e-36 | 127 |
| Msa1107230 | MtrunA17_Chr8g0391631 | 46.795 | 156 | 73 | 4 | 7 | 153 | 21 | 175 | 4.53e-36 | 125 |
| Msa1107230 | MtrunA17_Chr2g0312681 | 36.058 | 208 | 128 | 4 | 7 | 212 | 4 | 208 | 2.83e-35 | 124 |
| Msa1107230 | MtrunA17_Chr2g0312711 | 38.743 | 191 | 111 | 4 | 16 | 204 | 13 | 199 | 5.24e-30 | 110 |
| Msa1107230 | MtrunA17_Chr2g0313561 | 43.077 | 65 | 36 | 1 | 51 | 114 | 2 | 66 | 1.30e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1107230 | AT3G09270.1 | 53.125 | 224 | 101 | 4 | 3 | 223 | 2 | 224 | 4.67e-77 | 231 |
| Msa1107230 | AT2G29420.1 | 47.945 | 219 | 112 | 2 | 3 | 220 | 5 | 222 | 1.17e-71 | 218 |
| Msa1107230 | AT2G29490.1 | 49.048 | 210 | 102 | 4 | 1 | 207 | 1 | 208 | 1.22e-60 | 190 |
| Msa1107230 | AT2G29450.1 | 47.826 | 207 | 106 | 2 | 3 | 207 | 2 | 208 | 2.09e-58 | 184 |
| Msa1107230 | AT2G29480.1 | 47.847 | 209 | 106 | 3 | 1 | 207 | 1 | 208 | 7.95e-58 | 182 |
| Msa1107230 | AT2G29460.1 | 44.595 | 222 | 120 | 3 | 1 | 220 | 1 | 221 | 5.88e-56 | 178 |
| Msa1107230 | AT2G29440.1 | 45.933 | 209 | 109 | 4 | 1 | 207 | 1 | 207 | 2.72e-54 | 174 |
| Msa1107230 | AT2G29470.1 | 45.024 | 211 | 110 | 5 | 1 | 207 | 1 | 209 | 2.62e-53 | 171 |
| Msa1107230 | AT1G10370.1 | 41.629 | 221 | 120 | 3 | 1 | 214 | 1 | 219 | 8.36e-50 | 162 |
| Msa1107230 | AT1G69930.1 | 36.283 | 226 | 138 | 2 | 2 | 221 | 7 | 232 | 1.29e-48 | 159 |
| Msa1107230 | AT5G62480.1 | 41.284 | 218 | 117 | 4 | 8 | 215 | 9 | 225 | 2.65e-48 | 159 |
| Msa1107230 | AT1G59700.1 | 44.037 | 218 | 114 | 4 | 5 | 214 | 4 | 221 | 2.78e-48 | 159 |
| Msa1107230 | AT1G27130.1 | 38.667 | 225 | 129 | 4 | 1 | 217 | 1 | 224 | 6.86e-47 | 155 |
| Msa1107230 | AT1G59670.1 | 41.204 | 216 | 119 | 3 | 5 | 212 | 4 | 219 | 1.41e-46 | 154 |
| Msa1107230 | AT1G78380.1 | 41.827 | 208 | 116 | 4 | 7 | 212 | 4 | 208 | 1.30e-45 | 151 |
| Msa1107230 | AT1G74590.1 | 37.727 | 220 | 130 | 3 | 1 | 214 | 1 | 219 | 1.65e-45 | 151 |
| Msa1107230 | AT1G10360.1 | 37.037 | 216 | 129 | 2 | 6 | 214 | 4 | 219 | 1.28e-44 | 149 |
| Msa1107230 | AT1G17170.1 | 40.553 | 217 | 123 | 5 | 6 | 220 | 3 | 215 | 1.96e-44 | 148 |
| Msa1107230 | AT1G78370.1 | 41.667 | 204 | 113 | 6 | 16 | 217 | 13 | 212 | 2.91e-44 | 148 |
| Msa1107230 | AT1G78340.1 | 43.256 | 215 | 114 | 6 | 6 | 216 | 3 | 213 | 3.71e-44 | 147 |
| Msa1107230 | AT1G53680.1 | 40.094 | 212 | 122 | 4 | 1 | 209 | 1 | 210 | 6.60e-43 | 144 |
| Msa1107230 | AT1G27140.1 | 38.261 | 230 | 126 | 7 | 1 | 218 | 1 | 226 | 1.60e-42 | 144 |
| Msa1107230 | AT1G78320.1 | 39.904 | 208 | 120 | 4 | 5 | 210 | 2 | 206 | 1.91e-42 | 143 |
| Msa1107230 | AT1G69920.1 | 36.404 | 228 | 135 | 4 | 1 | 218 | 26 | 253 | 4.08e-41 | 140 |
| Msa1107230 | AT1G17180.1 | 40.191 | 209 | 120 | 5 | 6 | 212 | 3 | 208 | 4.95e-41 | 139 |
| Msa1107230 | AT1G78360.1 | 41.148 | 209 | 117 | 6 | 7 | 212 | 4 | 209 | 6.46e-39 | 134 |
| Msa1107230 | AT3G43800.1 | 38.164 | 207 | 119 | 6 | 4 | 204 | 2 | 205 | 9.54e-38 | 131 |
| Msa1107230 | AT1G17190.1 | 42.697 | 178 | 97 | 5 | 16 | 191 | 14 | 188 | 1.02e-36 | 128 |
| Msa1107230 | AT5G62480.2 | 32.719 | 217 | 111 | 4 | 8 | 215 | 9 | 199 | 1.66e-30 | 112 |
| Msa1107230 | AT5G62480.3 | 32.719 | 217 | 110 | 4 | 8 | 215 | 9 | 198 | 3.45e-30 | 111 |
| Msa1107230 | AT1G78320.2 | 33.010 | 206 | 108 | 4 | 6 | 210 | 3 | 179 | 3.36e-26 | 100 |
| Msa1107230 | AT2G02380.1 | 26.512 | 215 | 139 | 6 | 5 | 207 | 9 | 216 | 9.18e-15 | 70.9 |
| Msa1107230 | AT2G02390.1 | 26.728 | 217 | 140 | 5 | 3 | 207 | 4 | 213 | 2.11e-12 | 64.7 |
| Msa1107230 | AT2G02390.3 | 26.339 | 224 | 139 | 6 | 3 | 207 | 4 | 220 | 1.55e-11 | 62.4 |
| Msa1107230 | AT2G02390.2 | 37.113 | 97 | 57 | 2 | 3 | 96 | 4 | 99 | 3.96e-11 | 60.5 |
Find 65 sgRNAs with CRISPR-Local
Find 214 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAAATAGATCAATTTA+AGG | 0.159458 | 7_3:+48739145 | Msa1107230:exon |
| AAAGAGCCTTGGCACGTTTC+TGG | 0.164876 | 7_3:+48738162 | Msa1107230:CDS |
| TACCTTGTCATCTATGAAAT+TGG | 0.177857 | 7_3:-48738186 | None:intergenic |
| ATATGTACTTGTGAAATTTA+AGG | 0.186318 | 7_3:+48739170 | Msa1107230:three_prime_UTR |
| TGTAATCAAACAACTGATTT+TGG | 0.203727 | 7_3:-48737843 | None:intergenic |
| TTGGATGATTGTTGAATTCT+TGG | 0.233990 | 7_3:-48739050 | None:intergenic |
| AATCACAAGGGACTCTGATA+TGG | 0.285005 | 7_3:-48738081 | None:intergenic |
| AGTCCAAATGCTTCTTGTAT+AGG | 0.292947 | 7_3:-48738982 | None:intergenic |
| ACAGGAACTTTCTTGTAAAC+AGG | 0.303772 | 7_3:-48738038 | None:intergenic |
| TTCTTTGGTGGGGAGGATAT+TGG | 0.313435 | 7_3:+48738916 | Msa1107230:CDS |
| TAAGGATCATTAGGCAAGAT+AGG | 0.313856 | 7_3:-48738137 | None:intergenic |
| CTCTACGATGGCATCAAATA+AGG | 0.319615 | 7_3:+48737878 | Msa1107230:exon |
| TGGCTCCAATTGTAAAGCTT+TGG | 0.323925 | 7_3:-48739030 | None:intergenic |
| GAGCTCAAGGACAAATTCTT+TGG | 0.339009 | 7_3:+48738901 | Msa1107230:CDS |
| TTGGTCATTGATTGATTCCT+AGG | 0.341347 | 7_3:-48737824 | None:intergenic |
| GAATATTATAATTCGGTGTT+TGG | 0.342397 | 7_3:+48739345 | Msa1107230:three_prime_UTR |
| TTAAATTTCACAAGTACATA+TGG | 0.351466 | 7_3:-48739168 | None:intergenic |
| GGATTAAGAATATTATAATT+CGG | 0.356108 | 7_3:+48739338 | Msa1107230:three_prime_UTR |
| CAACAATCATCCAATTGTTA+AGG | 0.374730 | 7_3:+48739059 | Msa1107230:CDS |
| GCCTCCTAGAGAGACCCTTT+TGG | 0.417652 | 7_3:+48739089 | Msa1107230:CDS |
| CCACCTATACAAGAAGCATT+TGG | 0.430472 | 7_3:+48738979 | Msa1107230:CDS |
| AATTTCCAAAGCTTTACAAT+TGG | 0.430707 | 7_3:+48739025 | Msa1107230:CDS |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7_3:-48737933 | None:intergenic |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7_3:+48737950 | Msa1107230:CDS |
| AATAATTAAATAATTATAGC+GGG | 0.452684 | 7_3:-48739272 | None:intergenic |
| TGTATATAAAAGCAAATCCT+AGG | 0.472351 | 7_3:+48737807 | Msa1107230:five_prime_UTR |
| ACCAGTGCTCCAATGGTGTT+CGG | 0.478017 | 7_3:+48738797 | Msa1107230:intron |
| TTATCATTATGAACAAATAC+AGG | 0.499212 | 7_3:-48738056 | None:intergenic |
| TTGAATATATTGATGAGACT+TGG | 0.500568 | 7_3:+48738105 | Msa1107230:CDS |
| ACAAGCTTTCCGAACACCAT+TGG | 0.501376 | 7_3:-48738806 | None:intergenic |
| AATATGAGCAAGAAAAGGTT+GGG | 0.503590 | 7_3:+48737985 | Msa1107230:CDS |
| AAGGATCATTAGGCAAGATA+GGG | 0.505915 | 7_3:-48738136 | None:intergenic |
| GAGCTTTGTAGAATGCCAAA+AGG | 0.508352 | 7_3:-48739104 | None:intergenic |
| ATTATAATTCGGTGTTTGGA+AGG | 0.510523 | 7_3:+48739349 | Msa1107230:three_prime_UTR |
| CTCAAGGACAAATTCTTTGG+TGG | 0.512720 | 7_3:+48738904 | Msa1107230:CDS |
| CAGGAACTTTCTTGTAAACA+GGG | 0.515430 | 7_3:-48738037 | None:intergenic |
| AAATATGAGCAAGAAAAGGT+TGG | 0.516900 | 7_3:+48737984 | Msa1107230:CDS |
| ATCACAAGGGACTCTGATAT+GGG | 0.519485 | 7_3:-48738080 | None:intergenic |
| CCAAATGCTTCTTGTATAGG+TGG | 0.519842 | 7_3:-48738979 | None:intergenic |
| TCAAGGACAAATTCTTTGGT+GGG | 0.523453 | 7_3:+48738905 | Msa1107230:CDS |
| AGAACGTGAGAAGAGTATTG+AGG | 0.526929 | 7_3:+48738846 | Msa1107230:CDS |
| ATTTCTTGAGAATGAGCTCA+AGG | 0.546430 | 7_3:+48738888 | Msa1107230:CDS |
| ATCAAATAAGGAAGAGGTGA+AGG | 0.549693 | 7_3:+48737890 | Msa1107230:CDS |
| ATACAAATATGAGCAAGAAA+AGG | 0.550926 | 7_3:+48737980 | Msa1107230:CDS |
| TGATCCTTATAAAAGAGCCT+TGG | 0.561258 | 7_3:+48738151 | Msa1107230:CDS |
| AGCTTTGTAGAATGCCAAAA+GGG | 0.565015 | 7_3:-48739103 | None:intergenic |
| AAATAATTAAATAATTATAG+CGG | 0.565180 | 7_3:-48739273 | None:intergenic |
| GAGTATTGAGGAAACAAAAG+AGG | 0.566255 | 7_3:+48738858 | Msa1107230:CDS |
| TGGAAAGTCCATTTGTAACA+AGG | 0.573831 | 7_3:+48737925 | Msa1107230:CDS |
| CAAGGACAAATTCTTTGGTG+GGG | 0.574827 | 7_3:+48738906 | Msa1107230:CDS |
| GATGGCATCAAATAAGGAAG+AGG | 0.575114 | 7_3:+48737884 | Msa1107230:exon |
| GGACAAATTCTTTGGTGGGG+AGG | 0.579613 | 7_3:+48738909 | Msa1107230:CDS |
| AATGCCAAAAGGGTCTCTCT+AGG | 0.585218 | 7_3:-48739093 | None:intergenic |
| ACTGAAATTGTTCACTAGTG+AGG | 0.598807 | 7_3:+48739002 | Msa1107230:CDS |
| CAATATATTCAAGAATCACA+AGG | 0.601780 | 7_3:-48738094 | None:intergenic |
| CAAATGCTTCTTGTATAGGT+GGG | 0.601872 | 7_3:-48738978 | None:intergenic |
| TTGTGAGACCAGTGCTCCAA+TGG | 0.602330 | 7_3:+48738790 | Msa1107230:intron |
| GGAAAGTCCATTTGTAACAA+GGG | 0.613221 | 7_3:+48737926 | Msa1107230:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7_3:+48737951 | Msa1107230:CDS |
| GCCAAAAGGGTCTCTCTAGG+AGG | 0.628476 | 7_3:-48739090 | None:intergenic |
| GTCCAATTTCATAGATGACA+AGG | 0.633419 | 7_3:+48738184 | Msa1107230:CDS |
| AAGTCCATTTGTAACAAGGG+TGG | 0.642673 | 7_3:+48737929 | Msa1107230:CDS |
| TAATTGATCAAGCTCTACGA+TGG | 0.664909 | 7_3:+48737866 | Msa1107230:exon |
| ATTGGACCAGAAACGTGCCA+AGG | 0.673197 | 7_3:-48738168 | None:intergenic |
| AATATATTCAAGAATCACAA+GGG | 0.678725 | 7_3:-48738093 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATAAACAAAATAATTTTTT+TGG | + | chr7_3:48738390-48738409 | Msa1107230:intron | 10.0% |
| !! | TTTGTTAAAAAAAAAACAAT+TGG | - | chr7_3:48738578-48738597 | None:intergenic | 10.0% |
| !! | AATAATTAAATAATTATAGC+GGG | - | chr7_3:48739275-48739294 | None:intergenic | 10.0% |
| !!! | GATAAACAAAATAATTTTTT+TGG | + | chr7_3:48738390-48738409 | Msa1107230:intron | 10.0% |
| !! | TTTGTTAAAAAAAAAACAAT+TGG | - | chr7_3:48738578-48738597 | None:intergenic | 10.0% |
| !! | AATAATTAAATAATTATAGC+GGG | - | chr7_3:48739275-48739294 | None:intergenic | 10.0% |
| !! | AAACTAGTAAAAAATAAACT+AGG | - | chr7_3:48737744-48737763 | None:intergenic | 15.0% |
| !!! | TGAAACAATTTTTTATCAAA+TGG | - | chr7_3:48738488-48738507 | None:intergenic | 15.0% |
| !!! | AAGTTAATTGATTTGTTTTT+AGG | - | chr7_3:48738713-48738732 | None:intergenic | 15.0% |
| !! | GGATTAAGAATATTATAATT+CGG | + | chr7_3:48739338-48739357 | Msa1107230:three_prime_UTR | 15.0% |
| !! | AAACTAGTAAAAAATAAACT+AGG | - | chr7_3:48737744-48737763 | None:intergenic | 15.0% |
| !!! | TGAAACAATTTTTTATCAAA+TGG | - | chr7_3:48738488-48738507 | None:intergenic | 15.0% |
| !!! | AAGTTAATTGATTTGTTTTT+AGG | - | chr7_3:48738713-48738732 | None:intergenic | 15.0% |
| !! | GGATTAAGAATATTATAATT+CGG | + | chr7_3:48739338-48739357 | Msa1107230:three_prime_UTR | 15.0% |
| !!! | GGATTATTTTTCAACAAAAA+CGG | - | chr7_3:48737781-48737800 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACAAATAC+AGG | - | chr7_3:48738059-48738078 | None:intergenic | 20.0% |
| !! | AATATATTCAAGAATCACAA+GGG | - | chr7_3:48738096-48738115 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTGACAACAT+GGG | - | chr7_3:48738360-48738379 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACAATTGGACT+CGG | - | chr7_3:48738572-48738591 | None:intergenic | 20.0% |
| !! | CTTCAAAATAGATCAATTTA+AGG | + | chr7_3:48739145-48739164 | Msa1107230:exon | 20.0% |
| !! | TTAAATTTCACAAGTACATA+TGG | - | chr7_3:48739171-48739190 | None:intergenic | 20.0% |
| !! | ATATGTACTTGTGAAATTTA+AGG | + | chr7_3:48739170-48739189 | Msa1107230:three_prime_UTR | 20.0% |
| !!! | GGATTATTTTTCAACAAAAA+CGG | - | chr7_3:48737781-48737800 | None:intergenic | 20.0% |
| !! | TTATCATTATGAACAAATAC+AGG | - | chr7_3:48738059-48738078 | None:intergenic | 20.0% |
| !! | AATATATTCAAGAATCACAA+GGG | - | chr7_3:48738096-48738115 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTGTTGACAACAT+GGG | - | chr7_3:48738360-48738379 | None:intergenic | 20.0% |
| !! | AAAAAAAAAACAATTGGACT+CGG | - | chr7_3:48738572-48738591 | None:intergenic | 20.0% |
| !! | CTTCAAAATAGATCAATTTA+AGG | + | chr7_3:48739145-48739164 | Msa1107230:exon | 20.0% |
| !! | TTAAATTTCACAAGTACATA+TGG | - | chr7_3:48739171-48739190 | None:intergenic | 20.0% |
| !! | ATATGTACTTGTGAAATTTA+AGG | + | chr7_3:48739170-48739189 | Msa1107230:three_prime_UTR | 20.0% |
| ! | TGTATATAAAAGCAAATCCT+AGG | + | chr7_3:48737807-48737826 | Msa1107230:five_prime_UTR | 25.0% |
| !!! | TGTAATCAAACAACTGATTT+TGG | - | chr7_3:48737846-48737865 | None:intergenic | 25.0% |
| ! | ATACAAATATGAGCAAGAAA+AGG | + | chr7_3:48737980-48737999 | Msa1107230:CDS | 25.0% |
| ! | CAATATATTCAAGAATCACA+AGG | - | chr7_3:48738097-48738116 | None:intergenic | 25.0% |
| ! | TTGAATATATTGATGAGACT+TGG | + | chr7_3:48738105-48738124 | Msa1107230:CDS | 25.0% |
| ! | ACATCGATAAAAATAGAAGA+GGG | - | chr7_3:48738219-48738238 | None:intergenic | 25.0% |
| ! | TACATCGATAAAAATAGAAG+AGG | - | chr7_3:48738220-48738239 | None:intergenic | 25.0% |
| ! | TAAAGTTGGATATTTGAACT+TGG | - | chr7_3:48738251-48738270 | None:intergenic | 25.0% |
| ! | TATTTAGTGCTAACTAAAGT+TGG | - | chr7_3:48738297-48738316 | None:intergenic | 25.0% |
| !! | CTAAGTAAATTTGAGATCTT+AGG | + | chr7_3:48738322-48738341 | Msa1107230:intron | 25.0% |
| !!! | CTTTTTTTTTGTTGACAACA+TGG | - | chr7_3:48738361-48738380 | None:intergenic | 25.0% |
| !! | ATGGTACTTTATTTACCTTT+CGG | - | chr7_3:48738469-48738488 | None:intergenic | 25.0% |
| ! | AAAAAAAAACAATTGGACTC+GGG | - | chr7_3:48738571-48738590 | None:intergenic | 25.0% |
| !!! | TGAGAAAGTATCTAACTTAA+AGG | + | chr7_3:48738669-48738688 | Msa1107230:intron | 25.0% |
| !! | TTTAGGTTAAATATCACATG+TGG | - | chr7_3:48738696-48738715 | None:intergenic | 25.0% |
| ! | AATTTCCAAAGCTTTACAAT+TGG | + | chr7_3:48739025-48739044 | Msa1107230:CDS | 25.0% |
| !!! | GAATATTATAATTCGGTGTT+TGG | + | chr7_3:48739345-48739364 | Msa1107230:three_prime_UTR | 25.0% |
| ! | TGTATATAAAAGCAAATCCT+AGG | + | chr7_3:48737807-48737826 | Msa1107230:five_prime_UTR | 25.0% |
| !!! | TGTAATCAAACAACTGATTT+TGG | - | chr7_3:48737846-48737865 | None:intergenic | 25.0% |
| ! | ATACAAATATGAGCAAGAAA+AGG | + | chr7_3:48737980-48737999 | Msa1107230:CDS | 25.0% |
| ! | CAATATATTCAAGAATCACA+AGG | - | chr7_3:48738097-48738116 | None:intergenic | 25.0% |
| ! | TTGAATATATTGATGAGACT+TGG | + | chr7_3:48738105-48738124 | Msa1107230:CDS | 25.0% |
| ! | ACATCGATAAAAATAGAAGA+GGG | - | chr7_3:48738219-48738238 | None:intergenic | 25.0% |
| ! | TACATCGATAAAAATAGAAG+AGG | - | chr7_3:48738220-48738239 | None:intergenic | 25.0% |
| ! | TAAAGTTGGATATTTGAACT+TGG | - | chr7_3:48738251-48738270 | None:intergenic | 25.0% |
| ! | TATTTAGTGCTAACTAAAGT+TGG | - | chr7_3:48738297-48738316 | None:intergenic | 25.0% |
| !! | CTAAGTAAATTTGAGATCTT+AGG | + | chr7_3:48738322-48738341 | Msa1107230:intron | 25.0% |
| !!! | CTTTTTTTTTGTTGACAACA+TGG | - | chr7_3:48738361-48738380 | None:intergenic | 25.0% |
| !! | ATGGTACTTTATTTACCTTT+CGG | - | chr7_3:48738469-48738488 | None:intergenic | 25.0% |
| ! | AAAAAAAAACAATTGGACTC+GGG | - | chr7_3:48738571-48738590 | None:intergenic | 25.0% |
| !!! | TGAGAAAGTATCTAACTTAA+AGG | + | chr7_3:48738669-48738688 | Msa1107230:intron | 25.0% |
| !! | TTTAGGTTAAATATCACATG+TGG | - | chr7_3:48738696-48738715 | None:intergenic | 25.0% |
| ! | AATTTCCAAAGCTTTACAAT+TGG | + | chr7_3:48739025-48739044 | Msa1107230:CDS | 25.0% |
| !!! | GAATATTATAATTCGGTGTT+TGG | + | chr7_3:48739345-48739364 | Msa1107230:three_prime_UTR | 25.0% |
| !! | TTGCTTTTATATACAGAGCA+AGG | - | chr7_3:48737802-48737821 | None:intergenic | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7_3:48737951-48737970 | Msa1107230:CDS | 30.0% |
| AAATATGAGCAAGAAAAGGT+TGG | + | chr7_3:48737984-48738003 | Msa1107230:CDS | 30.0% | |
| AATATGAGCAAGAAAAGGTT+GGG | + | chr7_3:48737985-48738004 | Msa1107230:CDS | 30.0% | |
| ! | GCTCTTTTATAAGGATCATT+AGG | - | chr7_3:48738149-48738168 | None:intergenic | 30.0% |
| TACCTTGTCATCTATGAAAT+TGG | - | chr7_3:48738189-48738208 | None:intergenic | 30.0% | |
| TGTTAACCATTCGATTATCA+AGG | + | chr7_3:48738414-48738433 | Msa1107230:intron | 30.0% | |
| GTTAACCATTCGATTATCAA+GGG | + | chr7_3:48738415-48738434 | Msa1107230:intron | 30.0% | |
| ! | TTTATCCCTTGATAATCGAA+TGG | - | chr7_3:48738423-48738442 | None:intergenic | 30.0% |
| AGAATCTGAATTCGATTTCT+GGG | - | chr7_3:48738511-48738530 | None:intergenic | 30.0% | |
| AAGAATCTGAATTCGATTTC+TGG | - | chr7_3:48738512-48738531 | None:intergenic | 30.0% | |
| !! | CTAAACAATTCGCCATTTTA+TGG | + | chr7_3:48738532-48738551 | Msa1107230:intron | 30.0% |
| GAGTAATGAGTTCCATAAAA+TGG | - | chr7_3:48738547-48738566 | None:intergenic | 30.0% | |
| GAACCAAAAAGCTATGATTA+CGG | - | chr7_3:48738959-48738978 | None:intergenic | 30.0% | |
| TTGGATGATTGTTGAATTCT+TGG | - | chr7_3:48739053-48739072 | None:intergenic | 30.0% | |
| CAACAATCATCCAATTGTTA+AGG | + | chr7_3:48739059-48739078 | Msa1107230:CDS | 30.0% | |
| ! | GGCAATTTTTCCTTAACAAT+TGG | - | chr7_3:48739072-48739091 | None:intergenic | 30.0% |
| ! | TGTGCTTTTATGTGTGTTTT+TGG | + | chr7_3:48739317-48739336 | Msa1107230:three_prime_UTR | 30.0% |
| !! | ATTATAATTCGGTGTTTGGA+AGG | + | chr7_3:48739349-48739368 | Msa1107230:three_prime_UTR | 30.0% |
| !! | TTGCTTTTATATACAGAGCA+AGG | - | chr7_3:48737802-48737821 | None:intergenic | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7_3:48737951-48737970 | Msa1107230:CDS | 30.0% |
| AAATATGAGCAAGAAAAGGT+TGG | + | chr7_3:48737984-48738003 | Msa1107230:CDS | 30.0% | |
| AATATGAGCAAGAAAAGGTT+GGG | + | chr7_3:48737985-48738004 | Msa1107230:CDS | 30.0% | |
| ! | GCTCTTTTATAAGGATCATT+AGG | - | chr7_3:48738149-48738168 | None:intergenic | 30.0% |
| TACCTTGTCATCTATGAAAT+TGG | - | chr7_3:48738189-48738208 | None:intergenic | 30.0% | |
| TGTTAACCATTCGATTATCA+AGG | + | chr7_3:48738414-48738433 | Msa1107230:intron | 30.0% | |
| GTTAACCATTCGATTATCAA+GGG | + | chr7_3:48738415-48738434 | Msa1107230:intron | 30.0% | |
| ! | TTTATCCCTTGATAATCGAA+TGG | - | chr7_3:48738423-48738442 | None:intergenic | 30.0% |
| AGAATCTGAATTCGATTTCT+GGG | - | chr7_3:48738511-48738530 | None:intergenic | 30.0% | |
| AAGAATCTGAATTCGATTTC+TGG | - | chr7_3:48738512-48738531 | None:intergenic | 30.0% | |
| !! | CTAAACAATTCGCCATTTTA+TGG | + | chr7_3:48738532-48738551 | Msa1107230:intron | 30.0% |
| GAGTAATGAGTTCCATAAAA+TGG | - | chr7_3:48738547-48738566 | None:intergenic | 30.0% | |
| GAACCAAAAAGCTATGATTA+CGG | - | chr7_3:48738959-48738978 | None:intergenic | 30.0% | |
| TTGGATGATTGTTGAATTCT+TGG | - | chr7_3:48739053-48739072 | None:intergenic | 30.0% | |
| CAACAATCATCCAATTGTTA+AGG | + | chr7_3:48739059-48739078 | Msa1107230:CDS | 30.0% | |
| ! | GGCAATTTTTCCTTAACAAT+TGG | - | chr7_3:48739072-48739091 | None:intergenic | 30.0% |
| ! | TGTGCTTTTATGTGTGTTTT+TGG | + | chr7_3:48739317-48739336 | Msa1107230:three_prime_UTR | 30.0% |
| !! | ATTATAATTCGGTGTTTGGA+AGG | + | chr7_3:48739349-48739368 | Msa1107230:three_prime_UTR | 30.0% |
| ! | TTGGTCATTGATTGATTCCT+AGG | - | chr7_3:48737827-48737846 | None:intergenic | 35.0% |
| TAATTGATCAAGCTCTACGA+TGG | + | chr7_3:48737866-48737885 | Msa1107230:exon | 35.0% | |
| ATCAAATAAGGAAGAGGTGA+AGG | + | chr7_3:48737890-48737909 | Msa1107230:CDS | 35.0% | |
| TGGAAAGTCCATTTGTAACA+AGG | + | chr7_3:48737925-48737944 | Msa1107230:CDS | 35.0% | |
| GGAAAGTCCATTTGTAACAA+GGG | + | chr7_3:48737926-48737945 | Msa1107230:CDS | 35.0% | |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7_3:48737950-48737969 | Msa1107230:CDS | 35.0% |
| CAGGAACTTTCTTGTAAACA+GGG | - | chr7_3:48738040-48738059 | None:intergenic | 35.0% | |
| ACAGGAACTTTCTTGTAAAC+AGG | - | chr7_3:48738041-48738060 | None:intergenic | 35.0% | |
| AAGGATCATTAGGCAAGATA+GGG | - | chr7_3:48738139-48738158 | None:intergenic | 35.0% | |
| TAAGGATCATTAGGCAAGAT+AGG | - | chr7_3:48738140-48738159 | None:intergenic | 35.0% | |
| TGATCCTTATAAAAGAGCCT+TGG | + | chr7_3:48738151-48738170 | Msa1107230:CDS | 35.0% | |
| GTCCAATTTCATAGATGACA+AGG | + | chr7_3:48738184-48738203 | Msa1107230:CDS | 35.0% | |
| !! | GAGTATTGAGGAAACAAAAG+AGG | + | chr7_3:48738858-48738877 | Msa1107230:CDS | 35.0% |
| ATTTCTTGAGAATGAGCTCA+AGG | + | chr7_3:48738888-48738907 | Msa1107230:CDS | 35.0% | |
| TCAAGGACAAATTCTTTGGT+GGG | + | chr7_3:48738905-48738924 | Msa1107230:CDS | 35.0% | |
| CAAATGCTTCTTGTATAGGT+GGG | - | chr7_3:48738981-48739000 | None:intergenic | 35.0% | |
| AGTCCAAATGCTTCTTGTAT+AGG | - | chr7_3:48738985-48739004 | None:intergenic | 35.0% | |
| ACTGAAATTGTTCACTAGTG+AGG | + | chr7_3:48739002-48739021 | Msa1107230:CDS | 35.0% | |
| ! | AGCTTTGTAGAATGCCAAAA+GGG | - | chr7_3:48739106-48739125 | None:intergenic | 35.0% |
| ! | TTGGTCATTGATTGATTCCT+AGG | - | chr7_3:48737827-48737846 | None:intergenic | 35.0% |
| TAATTGATCAAGCTCTACGA+TGG | + | chr7_3:48737866-48737885 | Msa1107230:exon | 35.0% | |
| ATCAAATAAGGAAGAGGTGA+AGG | + | chr7_3:48737890-48737909 | Msa1107230:CDS | 35.0% | |
| TGGAAAGTCCATTTGTAACA+AGG | + | chr7_3:48737925-48737944 | Msa1107230:CDS | 35.0% | |
| GGAAAGTCCATTTGTAACAA+GGG | + | chr7_3:48737926-48737945 | Msa1107230:CDS | 35.0% | |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7_3:48737950-48737969 | Msa1107230:CDS | 35.0% |
| CAGGAACTTTCTTGTAAACA+GGG | - | chr7_3:48738040-48738059 | None:intergenic | 35.0% | |
| ACAGGAACTTTCTTGTAAAC+AGG | - | chr7_3:48738041-48738060 | None:intergenic | 35.0% | |
| AAGGATCATTAGGCAAGATA+GGG | - | chr7_3:48738139-48738158 | None:intergenic | 35.0% | |
| TAAGGATCATTAGGCAAGAT+AGG | - | chr7_3:48738140-48738159 | None:intergenic | 35.0% | |
| TGATCCTTATAAAAGAGCCT+TGG | + | chr7_3:48738151-48738170 | Msa1107230:CDS | 35.0% | |
| GTCCAATTTCATAGATGACA+AGG | + | chr7_3:48738184-48738203 | Msa1107230:CDS | 35.0% | |
| !! | GAGTATTGAGGAAACAAAAG+AGG | + | chr7_3:48738858-48738877 | Msa1107230:CDS | 35.0% |
| ATTTCTTGAGAATGAGCTCA+AGG | + | chr7_3:48738888-48738907 | Msa1107230:CDS | 35.0% | |
| TCAAGGACAAATTCTTTGGT+GGG | + | chr7_3:48738905-48738924 | Msa1107230:CDS | 35.0% | |
| CAAATGCTTCTTGTATAGGT+GGG | - | chr7_3:48738981-48739000 | None:intergenic | 35.0% | |
| AGTCCAAATGCTTCTTGTAT+AGG | - | chr7_3:48738985-48739004 | None:intergenic | 35.0% | |
| ACTGAAATTGTTCACTAGTG+AGG | + | chr7_3:48739002-48739021 | Msa1107230:CDS | 35.0% | |
| ! | AGCTTTGTAGAATGCCAAAA+GGG | - | chr7_3:48739106-48739125 | None:intergenic | 35.0% |
| CTCTACGATGGCATCAAATA+AGG | + | chr7_3:48737878-48737897 | Msa1107230:exon | 40.0% | |
| GATGGCATCAAATAAGGAAG+AGG | + | chr7_3:48737884-48737903 | Msa1107230:exon | 40.0% | |
| ! | AAGGAAGAGGTGAAGGTTTT+TGG | + | chr7_3:48737897-48737916 | Msa1107230:CDS | 40.0% |
| !! | AGAGGTGAAGGTTTTTGGAT+TGG | + | chr7_3:48737902-48737921 | Msa1107230:CDS | 40.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7_3:48737929-48737948 | Msa1107230:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7_3:48737936-48737955 | None:intergenic | 40.0% | |
| ATCACAAGGGACTCTGATAT+GGG | - | chr7_3:48738083-48738102 | None:intergenic | 40.0% | |
| AATCACAAGGGACTCTGATA+TGG | - | chr7_3:48738084-48738103 | None:intergenic | 40.0% | |
| TTGTTGACAACATGGGTCTA+AGG | - | chr7_3:48738353-48738372 | None:intergenic | 40.0% | |
| TAATTCGAACTTCAGCCGAA+AGG | + | chr7_3:48738451-48738470 | Msa1107230:intron | 40.0% | |
| !! | AGCACTGGTCTCACAAATTA+AGG | - | chr7_3:48738786-48738805 | None:intergenic | 40.0% |
| !! | AGAACGTGAGAAGAGTATTG+AGG | + | chr7_3:48738846-48738865 | Msa1107230:CDS | 40.0% |
| GAGCTCAAGGACAAATTCTT+TGG | + | chr7_3:48738901-48738920 | Msa1107230:CDS | 40.0% | |
| CTCAAGGACAAATTCTTTGG+TGG | + | chr7_3:48738904-48738923 | Msa1107230:CDS | 40.0% | |
| CAAGGACAAATTCTTTGGTG+GGG | + | chr7_3:48738906-48738925 | Msa1107230:CDS | 40.0% | |
| ! | CTGCCGTAATCATAGCTTTT+TGG | + | chr7_3:48738953-48738972 | Msa1107230:CDS | 40.0% |
| CCAAATGCTTCTTGTATAGG+TGG | - | chr7_3:48738982-48739001 | None:intergenic | 40.0% | |
| !! | CCACCTATACAAGAAGCATT+TGG | + | chr7_3:48738979-48738998 | Msa1107230:CDS | 40.0% |
| TGGCTCCAATTGTAAAGCTT+TGG | - | chr7_3:48739033-48739052 | None:intergenic | 40.0% | |
| ! | GAGCTTTGTAGAATGCCAAA+AGG | - | chr7_3:48739107-48739126 | None:intergenic | 40.0% |
| CTCTACGATGGCATCAAATA+AGG | + | chr7_3:48737878-48737897 | Msa1107230:exon | 40.0% | |
| GATGGCATCAAATAAGGAAG+AGG | + | chr7_3:48737884-48737903 | Msa1107230:exon | 40.0% | |
| ! | AAGGAAGAGGTGAAGGTTTT+TGG | + | chr7_3:48737897-48737916 | Msa1107230:CDS | 40.0% |
| !! | AGAGGTGAAGGTTTTTGGAT+TGG | + | chr7_3:48737902-48737921 | Msa1107230:CDS | 40.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7_3:48737929-48737948 | Msa1107230:CDS | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7_3:48737936-48737955 | None:intergenic | 40.0% | |
| ATCACAAGGGACTCTGATAT+GGG | - | chr7_3:48738083-48738102 | None:intergenic | 40.0% | |
| AATCACAAGGGACTCTGATA+TGG | - | chr7_3:48738084-48738103 | None:intergenic | 40.0% | |
| TTGTTGACAACATGGGTCTA+AGG | - | chr7_3:48738353-48738372 | None:intergenic | 40.0% | |
| TAATTCGAACTTCAGCCGAA+AGG | + | chr7_3:48738451-48738470 | Msa1107230:intron | 40.0% | |
| !! | AGCACTGGTCTCACAAATTA+AGG | - | chr7_3:48738786-48738805 | None:intergenic | 40.0% |
| !! | AGAACGTGAGAAGAGTATTG+AGG | + | chr7_3:48738846-48738865 | Msa1107230:CDS | 40.0% |
| GAGCTCAAGGACAAATTCTT+TGG | + | chr7_3:48738901-48738920 | Msa1107230:CDS | 40.0% | |
| CTCAAGGACAAATTCTTTGG+TGG | + | chr7_3:48738904-48738923 | Msa1107230:CDS | 40.0% | |
| CAAGGACAAATTCTTTGGTG+GGG | + | chr7_3:48738906-48738925 | Msa1107230:CDS | 40.0% | |
| ! | CTGCCGTAATCATAGCTTTT+TGG | + | chr7_3:48738953-48738972 | Msa1107230:CDS | 40.0% |
| CCAAATGCTTCTTGTATAGG+TGG | - | chr7_3:48738982-48739001 | None:intergenic | 40.0% | |
| !! | CCACCTATACAAGAAGCATT+TGG | + | chr7_3:48738979-48738998 | Msa1107230:CDS | 40.0% |
| TGGCTCCAATTGTAAAGCTT+TGG | - | chr7_3:48739033-48739052 | None:intergenic | 40.0% | |
| ! | GAGCTTTGTAGAATGCCAAA+AGG | - | chr7_3:48739107-48739126 | None:intergenic | 40.0% |
| !! | GGTGAAGGTTTTTGGATTGG+TGG | + | chr7_3:48737905-48737924 | Msa1107230:CDS | 45.0% |
| ! | CGTGCCAAGGCTCTTTTATA+AGG | - | chr7_3:48738158-48738177 | None:intergenic | 45.0% |
| ACAAGCTTTCCGAACACCAT+TGG | - | chr7_3:48738809-48738828 | None:intergenic | 45.0% | |
| TTCTTTGGTGGGGAGGATAT+TGG | + | chr7_3:48738916-48738935 | Msa1107230:CDS | 45.0% | |
| AATGCCAAAAGGGTCTCTCT+AGG | - | chr7_3:48739096-48739115 | None:intergenic | 45.0% | |
| !! | GGTGAAGGTTTTTGGATTGG+TGG | + | chr7_3:48737905-48737924 | Msa1107230:CDS | 45.0% |
| ! | CGTGCCAAGGCTCTTTTATA+AGG | - | chr7_3:48738158-48738177 | None:intergenic | 45.0% |
| ACAAGCTTTCCGAACACCAT+TGG | - | chr7_3:48738809-48738828 | None:intergenic | 45.0% | |
| TTCTTTGGTGGGGAGGATAT+TGG | + | chr7_3:48738916-48738935 | Msa1107230:CDS | 45.0% | |
| AATGCCAAAAGGGTCTCTCT+AGG | - | chr7_3:48739096-48739115 | None:intergenic | 45.0% | |
| !! | AAAAAAAATAATAATAAAGT+TGG | - | chr7_3:48738265-48738284 | None:intergenic | 5.0% |
| !!! | CTTTATTATTATTTTTTTTA+AGG | + | chr7_3:48738266-48738285 | Msa1107230:intron | 5.0% |
| !!! | ATAAACAAAATAATTTTTTT+GGG | + | chr7_3:48738391-48738410 | Msa1107230:intron | 5.0% |
| !! | AAATAATTAAATAATTATAG+CGG | - | chr7_3:48739276-48739295 | None:intergenic | 5.0% |
| !! | AAAAAAAATAATAATAAAGT+TGG | - | chr7_3:48738265-48738284 | None:intergenic | 5.0% |
| !!! | CTTTATTATTATTTTTTTTA+AGG | + | chr7_3:48738266-48738285 | Msa1107230:intron | 5.0% |
| !!! | ATAAACAAAATAATTTTTTT+GGG | + | chr7_3:48738391-48738410 | Msa1107230:intron | 5.0% |
| !! | AAATAATTAAATAATTATAG+CGG | - | chr7_3:48739276-48739295 | None:intergenic | 5.0% |
| AAAGAGCCTTGGCACGTTTC+TGG | + | chr7_3:48738162-48738181 | Msa1107230:CDS | 50.0% | |
| ATTGGACCAGAAACGTGCCA+AGG | - | chr7_3:48738171-48738190 | None:intergenic | 50.0% | |
| TTGTGAGACCAGTGCTCCAA+TGG | + | chr7_3:48738790-48738809 | Msa1107230:intron | 50.0% | |
| ACCAGTGCTCCAATGGTGTT+CGG | + | chr7_3:48738797-48738816 | Msa1107230:intron | 50.0% | |
| GGACAAATTCTTTGGTGGGG+AGG | + | chr7_3:48738909-48738928 | Msa1107230:CDS | 50.0% | |
| AAAGAGCCTTGGCACGTTTC+TGG | + | chr7_3:48738162-48738181 | Msa1107230:CDS | 50.0% | |
| ATTGGACCAGAAACGTGCCA+AGG | - | chr7_3:48738171-48738190 | None:intergenic | 50.0% | |
| TTGTGAGACCAGTGCTCCAA+TGG | + | chr7_3:48738790-48738809 | Msa1107230:intron | 50.0% | |
| ACCAGTGCTCCAATGGTGTT+CGG | + | chr7_3:48738797-48738816 | Msa1107230:intron | 50.0% | |
| GGACAAATTCTTTGGTGGGG+AGG | + | chr7_3:48738909-48738928 | Msa1107230:CDS | 50.0% | |
| TCCGAACACCATTGGAGCAC+TGG | - | chr7_3:48738801-48738820 | None:intergenic | 55.0% | |
| ! | GCCTCCTAGAGAGACCCTTT+TGG | + | chr7_3:48739089-48739108 | Msa1107230:CDS | 55.0% |
| GCCAAAAGGGTCTCTCTAGG+AGG | - | chr7_3:48739093-48739112 | None:intergenic | 55.0% | |
| TCCGAACACCATTGGAGCAC+TGG | - | chr7_3:48738801-48738820 | None:intergenic | 55.0% | |
| ! | GCCTCCTAGAGAGACCCTTT+TGG | + | chr7_3:48739089-48739108 | Msa1107230:CDS | 55.0% |
| GCCAAAAGGGTCTCTCTAGG+AGG | - | chr7_3:48739093-48739112 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 48737727 | 48739395 | 48737727 | ID=Msa1107230;Name=Msa1107230 |
| chr7_3 | mRNA | 48737727 | 48739395 | 48737727 | ID=Msa1107230-mRNA-1;Parent=Msa1107230;Name=Msa1107230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=158|1|1|1|1|1|2|240|224 |
| chr7_3 | exon | 48737727 | 48738205 | 48737727 | ID=Msa1107230-mRNA-1:exon:9902;Parent=Msa1107230-mRNA-1 |
| chr7_3 | exon | 48738802 | 48739395 | 48738802 | ID=Msa1107230-mRNA-1:exon:9903;Parent=Msa1107230-mRNA-1 |
| chr7_3 | five_prime_UTR | 48737727 | 48737884 | 48737727 | ID=Msa1107230-mRNA-1:five_prime_utr;Parent=Msa1107230-mRNA-1 |
| chr7_3 | CDS | 48737885 | 48738205 | 48737885 | ID=Msa1107230-mRNA-1:cds;Parent=Msa1107230-mRNA-1 |
| chr7_3 | CDS | 48738802 | 48739155 | 48738802 | ID=Msa1107230-mRNA-1:cds;Parent=Msa1107230-mRNA-1 |
| chr7_3 | three_prime_UTR | 48739156 | 48739395 | 48739156 | ID=Msa1107230-mRNA-1:three_prime_utr;Parent=Msa1107230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
