AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1233820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233820 MtrunA17_Chr8g0343491 96.618 680 5 3 1 665 1 677 0.0 1352
Msa1233820 MtrunA17_Chr4g0027511 52.019 644 266 11 54 665 6 638 0.0 659
Msa1233820 MtrunA17_Chr6g0462921 54.286 105 31 2 229 333 38 125 3.15e-26 104
Msa1233820 MtrunA17_Chr4g0070721 37.963 108 27 2 558 665 35 102 5.28e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1233820 AT5G13640.1 72.449 686 153 6 1 665 1 671 0.0 1021
Msa1233820 AT5G13640.3 75.479 522 110 3 162 665 6 527 0.0 810
Msa1233820 AT5G13640.2 75.340 515 109 3 169 665 1 515 0.0 796
Msa1233820 AT3G44830.1 55.621 676 251 10 23 665 6 665 0.0 773
Msa1233820 AT1G04010.1 22.774 483 304 17 123 585 44 477 1.67e-16 84.0

Find 219 sgRNAs with CRISPR-Local

Find 454 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATTGCCTTAATATATT+TGG 0.103968 8_2:+10842361 None:intergenic
TAAGATGCACTCAGAATTTC+TGG 0.156244 8_2:-10839216 Msa1233820:three_prime_UTR
TTGGATTCCTCTCCCGTTAC+TGG 0.191227 8_2:-10839451 Msa1233820:three_prime_UTR
TATTTGTAGTGTTCATATTT+AGG 0.211408 8_2:+10840980 None:intergenic
TTGGTTGCATTTGTACTTTA+TGG 0.241231 8_2:-10845398 Msa1233820:CDS
AGATTGTGGGGTGGTACTTT+TGG 0.243250 8_2:-10845162 Msa1233820:CDS
TTGCCGCAGGATACTTTGTT+TGG 0.248698 8_2:-10842753 Msa1233820:CDS
GGTAGTGATCATTTCTCTTA+TGG 0.264256 8_2:-10841025 Msa1233820:CDS
CGGTGCTCATGTTGATATAA+TGG 0.274500 8_2:-10839603 Msa1233820:CDS
TGTTAACAGGGTGCAATTAA+AGG 0.281345 8_2:-10841202 Msa1233820:intron
TGCGTCTTCCTCTCTCCTTT+TGG 0.281518 8_2:+10839422 None:intergenic
CATATTTGTCAGATGCTTCA+TGG 0.282342 8_2:-10839098 Msa1233820:three_prime_UTR
AAAACAAGATTCAATCCTTC+AGG 0.299444 8_2:-10839698 Msa1233820:CDS
TGTGTCTATTTCTTTCTTAC+CGG 0.300944 8_2:-10839369 Msa1233820:three_prime_UTR
ATGGAAATCTTCTCTCTATA+TGG 0.302929 8_2:-10839920 Msa1233820:CDS
ACCTCCCAATTCTTCTCCTT+TGG 0.306639 8_2:+10839535 None:intergenic
TTACCGGTGGACTTGAACTT+TGG 0.316075 8_2:-10845221 Msa1233820:CDS
CGCCTTATTTCCACCATTAG+TGG 0.316185 8_2:+10842487 None:intergenic
TTCCACTAATGGTGGAAATA+AGG 0.317590 8_2:-10842489 Msa1233820:CDS
CTTATAAATATAAGCTCTTT+CGG 0.325469 8_2:+10839883 None:intergenic
AGGAGCCAAAGGAGAAGAAT+TGG 0.328819 8_2:-10839540 Msa1233820:CDS
TGTATTCTGATATCTTTAAA+TGG 0.332543 8_2:-10839505 Msa1233820:CDS
GTTACCAAATGCCCCTGATA+TGG 0.335640 8_2:-10839939 Msa1233820:CDS
GACAGTTGTTGTTGGTTTGT+TGG 0.336488 8_2:-10845417 Msa1233820:CDS
GAACTCATGGTTTCCACTAA+TGG 0.339436 8_2:-10842500 Msa1233820:CDS
TTTGTTCCCGGGATTGTTAC+CGG 0.341600 8_2:-10845237 Msa1233820:CDS
AGAGAGAAGATTTCCATATC+AGG 0.346793 8_2:+10839926 None:intergenic
AAAACATTAGATTTGTTGTA+TGG 0.353623 8_2:-10839136 Msa1233820:three_prime_UTR
GAAATTCTGAGTGCATCTTA+TGG 0.353986 8_2:+10839219 None:intergenic
CAAAGGGAGGGGACACCATA+TGG 0.361138 8_2:-10841759 Msa1233820:CDS
CCACTCTTTCATTTCTCTAA+AGG 0.367580 8_2:-10839297 Msa1233820:three_prime_UTR
ATTCCAGTGAGTGGCGAAAC+AGG 0.369077 8_2:-10839174 Msa1233820:three_prime_UTR
GTGGACTGAATACCATGATA+TGG 0.370394 8_2:-10841146 Msa1233820:CDS
TTGTCACCACCATCGGCATT+AGG 0.371415 8_2:+10839818 None:intergenic
AATATGAACACTACAAATAT+TGG 0.371581 8_2:-10840976 Msa1233820:CDS
AATAAAACAAATGTTAACTA+TGG 0.372300 8_2:-10841646 Msa1233820:CDS
TATGTCACTGAGGCTATTAC+TGG 0.372743 8_2:-10845327 Msa1233820:CDS
ATTTCCATATCAGGGGCATT+TGG 0.379794 8_2:+10839935 None:intergenic
TACCGGTGGACTTGAACTTT+GGG 0.383614 8_2:-10845220 Msa1233820:CDS
CTTCCTGTTTCGCCACTCAC+TGG 0.394705 8_2:+10839171 None:intergenic
TGCCGCAGGATACTTTGTTT+GGG 0.402404 8_2:-10842752 Msa1233820:CDS
AAAAGCCCTGCTATAGCCTT+TGG 0.405655 8_2:+10842311 None:intergenic
CCTCCACCACCCATTGGAGC+TGG 0.407920 8_2:+10842401 None:intergenic
GATTGTTTAGGAAGAGATTG+TGG 0.412017 8_2:-10845176 Msa1233820:CDS
GTCACAAGGGCGATTGCACC+AGG 0.412573 8_2:-10841871 Msa1233820:intron
AAATCTCACTTTGTCTCCAA+TGG 0.415645 8_2:+10840947 None:intergenic
ATTAGAGTCCGGCCTGTCTC+AGG 0.417705 8_2:-10842796 Msa1233820:CDS
AGAAGAATTGGGAGGTGATA+AGG 0.418018 8_2:-10839528 Msa1233820:CDS
ACCGTTCCAGTTCTAAGTTC+AGG 0.418808 8_2:-10839749 Msa1233820:CDS
CTTGTGTTGACAGTTGTTGT+TGG 0.423297 8_2:-10845425 Msa1233820:CDS
ATATATTTGGAACACCAATC+TGG 0.423493 8_2:+10842374 None:intergenic
CCTCCAGCCAACCTGCTAGA+AGG 0.424011 8_2:-10839641 Msa1233820:CDS
GTGTTCCTCTACCTTCTAGC+AGG 0.427920 8_2:+10839630 None:intergenic
AATTTCAAACCAGGTGGATC+AGG 0.428308 8_2:+10845297 None:intergenic
TATGGAAGAATGATATCGTT+TGG 0.432064 8_2:-10841628 Msa1233820:CDS
CATTGATTGAAGATGTTATG+AGG 0.435282 8_2:-10839571 Msa1233820:CDS
GGTTTGAAATTGAAGAAAGA+AGG 0.435600 8_2:-10845285 Msa1233820:CDS
AATCTCACTTTGTCTCCAAT+GGG 0.435990 8_2:+10840948 None:intergenic
CCATATGGGGCGGCCTTGAT+TGG 0.437777 8_2:-10841744 Msa1233820:CDS
GGTGCTCATGTTGATATAAT+GGG 0.440547 8_2:-10839602 Msa1233820:CDS
CATATGGTGTCCCCTCCCTT+TGG 0.441069 8_2:+10841760 None:intergenic
TTGGTGTTCCAAATATATTA+AGG 0.441232 8_2:-10842369 Msa1233820:CDS
GCTTTACTCGCAAAGGGGTG+TGG 0.443355 8_2:+10839331 None:intergenic
AAAAGGGTCAGAACCAGAAA+AGG 0.444668 8_2:-10845586 Msa1233820:CDS
CTACCTTCTAGCAGGTTGGC+TGG 0.446447 8_2:+10839638 None:intergenic
GCTCCAATGGGTGGTGGAGG+AGG 0.446584 8_2:-10842398 Msa1233820:CDS
AAGTTACCTTTGTGAGGGGT+TGG 0.447573 8_2:-10839470 Msa1233820:exon
ATGTCCCTCGACAATGAAAC+AGG 0.448523 8_2:-10842835 Msa1233820:CDS
GTTTGTTGCTCCTAAAATGA+TGG 0.451458 8_2:-10841053 Msa1233820:CDS
TGCTTTGCTTTCTCGTGTGA+AGG 0.451646 8_2:+10841701 None:intergenic
GGCGGTCCTAATTGCTAACT+TGG 0.452626 8_2:-10842731 Msa1233820:CDS
TTTCCTCTGGTGACCAATCA+AGG 0.454472 8_2:+10841731 None:intergenic
CCAATCAAGGCCGCCCCATA+TGG 0.454908 8_2:+10841744 None:intergenic
CATTCTGCTTTACTCGCAAA+GGG 0.458260 8_2:+10839325 None:intergenic
GCTTTGATCCGAAGAAGAAA+AGG 0.459566 8_2:-10845603 Msa1233820:CDS
ATGTAGCCTGAACTTAGAAC+TGG 0.463062 8_2:+10839743 None:intergenic
GTTATTATTCCACATTCGAT+GGG 0.463783 8_2:-10842464 Msa1233820:CDS
GGTCCTCCTCCACCACCCAT+TGG 0.468600 8_2:+10842395 None:intergenic
CCAGCTCCAATGGGTGGTGG+AGG 0.468894 8_2:-10842401 Msa1233820:CDS
TGTGTTACAGACCTTCATGC+TGG 0.470900 8_2:-10842867 Msa1233820:intron
CCATTCCTGTTTCATTGTCG+AGG 0.473998 8_2:+10842830 None:intergenic
TAAATATAAGCTCTTTCGGT+TGG 0.474291 8_2:+10839887 None:intergenic
TGTACATGGCTGCATATGAT+TGG 0.475105 8_2:-10842681 Msa1233820:CDS
CAAGAGGTATTTGCAACATT+GGG 0.475576 8_2:+10841178 None:intergenic
GAGAGAAGATTTCCATATCA+GGG 0.475876 8_2:+10839927 None:intergenic
TCCTCTACCTTCTAGCAGGT+TGG 0.476959 8_2:+10839634 None:intergenic
GGTGTTCCAAAGGCTATAGC+AGG 0.481359 8_2:-10842317 Msa1233820:CDS
GGTTGAAGCACCAGCTCCAA+TGG 0.483423 8_2:-10842411 Msa1233820:CDS
ACCTTGCAACAGCAATGTCT+CGG 0.492893 8_2:+10842276 None:intergenic
AAGTCCACCGGTAACAATCC+CGG 0.497142 8_2:+10845230 None:intergenic
CGGTGGACTTGAACTTTGGG+AGG 0.499887 8_2:-10845217 Msa1233820:CDS
GAACATAAAGTTTACACAGC+TGG 0.501037 8_2:-10841097 Msa1233820:CDS
GGTTATTATTCCACATTCGA+TGG 0.501585 8_2:-10842465 Msa1233820:CDS
TCAGGCTACATGTGTGCTAA+AGG 0.504236 8_2:-10839731 Msa1233820:CDS
GCATTAGGATCAATTTCAAA+AGG 0.506029 8_2:+10839833 None:intergenic
TATAAGCTCTTTCGGTTGGT+AGG 0.506491 8_2:+10839891 None:intergenic
GATGGTGTCTACACTGTTGA+TGG 0.507653 8_2:-10839779 Msa1233820:CDS
CAAATATTGGTCAAACCCAT+TGG 0.508140 8_2:-10840963 Msa1233820:CDS
AAAGGGAGGGGACACCATAT+GGG 0.509172 8_2:-10841758 Msa1233820:CDS
ATTCCTCTCCCGTTACTGGA+TGG 0.510025 8_2:-10839447 Msa1233820:three_prime_UTR
TGAAGGCCACAGCTTTCCTC+TGG 0.510466 8_2:+10841718 None:intergenic
GGTGTGAGTGAGAATTGAAA+AGG 0.510689 8_2:+10845750 None:intergenic
GGAGCCAAAGGAGAAGAATT+GGG 0.511925 8_2:-10839539 Msa1233820:CDS
TAGGAGCAACAAACTGAAGC+AGG 0.512817 8_2:+10841062 None:intergenic
CTCCCTCGACTCCCATATCA+TGG 0.515621 8_2:+10841134 None:intergenic
GCATTCTGCTTTACTCGCAA+AGG 0.516241 8_2:+10839324 None:intergenic
ACAAGAGGTATTTGCAACAT+TGG 0.518958 8_2:+10841177 None:intergenic
GGGGTTACGTTATTCTTCGA+AGG 0.519826 8_2:+10845729 None:intergenic
AAGGGAGGGGACACCATATG+GGG 0.519875 8_2:-10841757 Msa1233820:CDS
CATTCCTGTTTCATTGTCGA+GGG 0.520640 8_2:+10842831 None:intergenic
ATTGTTTAGGAAGAGATTGT+GGG 0.522996 8_2:-10845175 Msa1233820:CDS
GGAGGGGACACCATATGGGG+CGG 0.523536 8_2:-10841754 Msa1233820:CDS
GCTACATGTGTGCTAAAGGT+TGG 0.525578 8_2:-10839727 Msa1233820:CDS
CCTTGCAACAGCAATGTCTC+GGG 0.526953 8_2:+10842277 None:intergenic
GTTTGAAATTGAAGAAAGAA+GGG 0.528606 8_2:-10845284 Msa1233820:CDS
ATCTTCTCTCTATATGGAGT+TGG 0.529573 8_2:-10839914 Msa1233820:CDS
TCTTTCTTCAATTTCAAACC+AGG 0.532135 8_2:+10845288 None:intergenic
TGCGTGCCAAGTTAGCAATT+AGG 0.532533 8_2:+10842725 None:intergenic
GAGGGGCATCAGTGTGCTGA+AGG 0.535914 8_2:-10845198 Msa1233820:CDS
ATCCACCTGGCATTAGAGTC+CGG 0.536092 8_2:-10842807 Msa1233820:CDS
GTGTGAGTGAGAATTGAAAA+GGG 0.539482 8_2:+10845751 None:intergenic
AGTGTGCTGAAGGATTGTTT+AGG 0.539602 8_2:-10845188 Msa1233820:CDS
AGTCCACCGGTAACAATCCC+GGG 0.539777 8_2:+10845231 None:intergenic
CAAAGGTAACTTGATTCTAT+CGG 0.540277 8_2:+10839481 None:intergenic
GGTCCTATGCCTGATCCACC+TGG 0.541989 8_2:-10845306 Msa1233820:CDS
TTATGAAGATGACTCGCACT+TGG 0.542374 8_2:-10841804 Msa1233820:CDS
GTCAATGATACCAAAGGGAG+GGG 0.543790 8_2:-10841770 Msa1233820:CDS
AGGGTTGCAGCAGGAGCCAA+AGG 0.547037 8_2:-10839551 Msa1233820:CDS
GGAATGTAACACTCGGCAAA+GGG 0.548493 8_2:+10839854 None:intergenic
CTCCCAAAGTTCAAGTCCAC+CGG 0.550193 8_2:+10845218 None:intergenic
GTTGCATTTGTACTTTATGG+TGG 0.551687 8_2:-10845395 Msa1233820:CDS
AGGAATGTAACACTCGGCAA+AGG 0.554566 8_2:+10839853 None:intergenic
GAATCAAGTTACCTTTGTGA+GGG 0.557059 8_2:-10839475 Msa1233820:exon
CTCATGGTTTCCACTAATGG+TGG 0.558410 8_2:-10842497 Msa1233820:CDS
GATGTTATGAGGGTTGCAGC+AGG 0.559067 8_2:-10839560 Msa1233820:CDS
CGCAGGATACTTTGTTTGGG+CGG 0.559130 8_2:-10842749 Msa1233820:CDS
ACTAACTTTGTCACCACCAT+CGG 0.561747 8_2:+10839811 None:intergenic
CTTTGATCCGAAGAAGAAAA+GGG 0.562783 8_2:-10845602 Msa1233820:CDS
GCACCAGCTCCAATGGGTGG+TGG 0.563844 8_2:-10842404 Msa1233820:CDS
CGTTACTGGATGGTTCCAAA+AGG 0.564207 8_2:-10839437 Msa1233820:three_prime_UTR
AACAATGTCAATGATACCAA+AGG 0.566328 8_2:-10841776 Msa1233820:CDS
TACCATGATATGGGAGTCGA+GGG 0.566549 8_2:-10841136 Msa1233820:CDS
AAAGGGTCAGAACCAGAAAA+GGG 0.569243 8_2:-10845585 Msa1233820:CDS
TTCTTCAATTTCAAACCAGG+TGG 0.569825 8_2:+10845291 None:intergenic
ATTGCTAACTTGGCACGCAT+CGG 0.570105 8_2:-10842721 Msa1233820:CDS
ACAATGTCAATGATACCAAA+GGG 0.570573 8_2:-10841775 Msa1233820:CDS
GCAGCTACAAGTCCTGAGAC+AGG 0.571268 8_2:+10842784 None:intergenic
TGGACTGAATACCATGATAT+GGG 0.579168 8_2:-10841145 Msa1233820:CDS
CCTCGACAATGAAACAGGAA+TGG 0.579478 8_2:-10842830 Msa1233820:CDS
TATGAAGATGACTCGCACTT+GGG 0.579656 8_2:-10841803 Msa1233820:CDS
GCTGCTGACTACTTTGCCGC+AGG 0.579775 8_2:-10842766 Msa1233820:CDS
ACATACTGAGGAAATGAAGC+TGG 0.579803 8_2:+10845345 None:intergenic
GTGTTACAGACCTTCATGCT+GGG 0.580352 8_2:-10842866 Msa1233820:intron
CCCGAGACATTGCTGTTGCA+AGG 0.580720 8_2:-10842277 Msa1233820:intron
ACATAAGTGCGGATCCCTGA+AGG 0.582865 8_2:+10839683 None:intergenic
AGAATCAAGTTACCTTTGTG+AGG 0.584227 8_2:-10839476 Msa1233820:exon
ATTGATTGAAGATGTTATGA+GGG 0.584281 8_2:-10839570 Msa1233820:CDS
AAACAAGATTCAATCCTTCA+GGG 0.585693 8_2:-10839697 Msa1233820:CDS
ACAGGCCGGACTCTAATGCC+AGG 0.586620 8_2:+10842802 None:intergenic
GTTGAAGCACCAGCTCCAAT+GGG 0.588758 8_2:-10842410 Msa1233820:CDS
ATACCTCTTGTCGTGATGTG+TGG 0.589412 8_2:-10841165 Msa1233820:CDS
CTACAAGTCCTGAGACAGGC+CGG 0.589884 8_2:+10842788 None:intergenic
AAACCAGGTGGATCAGGCAT+AGG 0.590698 8_2:+10845303 None:intergenic
GAACCATCCAGTAACGGGAG+AGG 0.591346 8_2:+10839444 None:intergenic
GTGGATCCTCTCGATAGTAC+CGG 0.592563 8_2:+10839350 None:intergenic
AAAGTTAGTTGTCTGAAAGA+TGG 0.594243 8_2:-10839797 Msa1233820:CDS
TTATTATTCCACATTCGATG+GGG 0.597825 8_2:-10842463 Msa1233820:CDS
TTCTTACCGGTACTATCGAG+AGG 0.598025 8_2:-10839356 Msa1233820:three_prime_UTR
CACTAATGGTGGAAATAAGG+CGG 0.599508 8_2:-10842486 Msa1233820:CDS
GAAATTGATCCTAATGCCGA+TGG 0.600115 8_2:-10839827 Msa1233820:CDS
AGTCCACACATCACGACAAG+AGG 0.600708 8_2:+10841162 None:intergenic
GCCAACCTGCTAGAAGGTAG+AGG 0.602621 8_2:-10839635 Msa1233820:CDS
ATGTGCTCCACCCAGCATGA+AGG 0.609066 8_2:+10842856 None:intergenic
TGTCAATGATACCAAAGGGA+GGG 0.611058 8_2:-10841771 Msa1233820:CDS
CAAATTCAGATTCCAGTGAG+TGG 0.611840 8_2:-10839183 Msa1233820:three_prime_UTR
TTTAGGAAGAGATTGTGGGG+TGG 0.612276 8_2:-10845171 Msa1233820:CDS
TTCAAAAGGAATGTAACACT+CGG 0.613347 8_2:+10839847 None:intergenic
AAGGCAATTGTAAACATCGG+TGG 0.613847 8_2:-10842350 Msa1233820:CDS
CGGCCTTGATTGGTCACCAG+AGG 0.614675 8_2:-10841734 Msa1233820:CDS
GTGGTGGAGGAGGACCAGAT+TGG 0.615784 8_2:-10842388 Msa1233820:CDS
TATTATTCCACATTCGATGG+GGG 0.616054 8_2:-10842462 Msa1233820:CDS
ATTAAGGCAATTGTAAACAT+CGG 0.616704 8_2:-10842353 Msa1233820:CDS
AATCAAGTTACCTTTGTGAG+GGG 0.617198 8_2:-10839474 Msa1233820:exon
GGTGGACTTGAACTTTGGGA+GGG 0.617610 8_2:-10845216 Msa1233820:CDS
ATACCATGATATGGGAGTCG+AGG 0.618174 8_2:-10841137 Msa1233820:CDS
TGCGGGATCAAACACTAAGT+CGG 0.618626 8_2:-10842538 Msa1233820:CDS
GAGTGGCGAAACAGGAAGCA+AGG 0.618828 8_2:-10839166 Msa1233820:three_prime_UTR
GCCTGAACTTAGAACTGGAA+CGG 0.623216 8_2:+10839748 None:intergenic
CCTTTAGAGAAATGAAAGAG+TGG 0.625888 8_2:+10839297 None:intergenic
TTGTTTAGGAAGAGATTGTG+GGG 0.629813 8_2:-10845174 Msa1233820:CDS
ATGTGTGCTAAAGGTTGGCG+CGG 0.631669 8_2:-10839722 Msa1233820:CDS
GTGGACTTGAACTTTGGGAG+GGG 0.645485 8_2:-10845215 Msa1233820:CDS
GAAGCACCAGCTCCAATGGG+TGG 0.650096 8_2:-10842407 Msa1233820:CDS
CCTTCTAGCAGGTTGGCTGG+AGG 0.650840 8_2:+10839641 None:intergenic
CGCCCAAACAAAGTATCCTG+CGG 0.650887 8_2:+10842750 None:intergenic
GTGTTCCAAAGGCTATAGCA+GGG 0.651360 8_2:-10842316 Msa1233820:CDS
TTTGAGAGAAGAAATTGATG+GGG 0.652309 8_2:+10845710 None:intergenic
GAAACAGGAATGGATCCACC+TGG 0.653090 8_2:-10842820 Msa1233820:CDS
TTACAGACCTTCATGCTGGG+TGG 0.657680 8_2:-10842863 Msa1233820:intron
AGAGAAGATTTCCATATCAG+GGG 0.659632 8_2:+10839928 None:intergenic
GGATGGTTCCAAAAGGAGAG+AGG 0.665716 8_2:-10839430 Msa1233820:three_prime_UTR
GTTAAGTGTGAAGCATCCAG+TGG 0.670636 8_2:-10845262 Msa1233820:CDS
AGGAATCCAACCCCTCACAA+AGG 0.672701 8_2:+10839464 None:intergenic
ATGTCAATGATACCAAAGGG+AGG 0.678379 8_2:-10841772 Msa1233820:CDS
GCCAAAGGAGAAGAATTGGG+AGG 0.678687 8_2:-10839536 Msa1233820:CDS
GTTCCCGGGATTGTTACCGG+TGG 0.680821 8_2:-10845234 Msa1233820:CDS
ATAGCCTCAGTGACATACTG+AGG 0.682133 8_2:+10845333 None:intergenic
TGGTCACCAGAGGAAAGCTG+TGG 0.687949 8_2:-10841724 Msa1233820:CDS
CATATTCTCGAACATAAGTG+CGG 0.688532 8_2:+10839672 None:intergenic
CATGTTGCAATGTTTGAATG+CGG 0.688558 8_2:+10841827 None:intergenic
GAAGGTAGAGGAACACAAAG+CGG 0.691848 8_2:-10839623 Msa1233820:CDS
TTAAGAAGAAGAGTACTAGG+TGG 0.695244 8_2:-10845449 Msa1233820:CDS
GGCCGGACTCTAATGCCAGG+TGG 0.698938 8_2:+10842805 None:intergenic
ATTCTGCTTTACTCGCAAAG+GGG 0.700342 8_2:+10839326 None:intergenic
ATTGATCCTAATGCCGATGG+TGG 0.700702 8_2:-10839824 Msa1233820:CDS
TCACAAGGGCGATTGCACCA+GGG 0.702585 8_2:-10841870 Msa1233820:intron
ATTTCCTCAGTATGTCACTG+AGG 0.706751 8_2:-10845337 Msa1233820:CDS
GCTCCTAAAATGATGGCGCG+TGG 0.719297 8_2:-10841046 Msa1233820:CDS
AATATCATTTCAGAACACTG+AGG 0.773968 8_2:-10842656 Msa1233820:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAATAATAATATTTAT+TGG + chr8_2:10845339-10845358 None:intergenic 0.0%
!! CAAAATCAATTATTAAAATA+AGG + chr8_2:10842107-10842126 None:intergenic 10.0%
!!! TACTAGTATTTAATTTTAAA+TGG - chr8_2:10844192-10844211 Msa1233820:intron 10.0%
!!! ACTAGTATTTAATTTTAAAT+GGG - chr8_2:10844193-10844212 Msa1233820:intron 10.0%
!! ATTCATAATGATTATTTAAT+TGG + chr8_2:10844618-10844637 None:intergenic 10.0%
!!! AATAGTATTTATATTTTTCT+TGG + chr8_2:10844704-10844723 None:intergenic 10.0%
!!! TTTTGCTTTTTATTATTTTT+TGG - chr8_2:10845685-10845704 Msa1233820:five_prime_UTR 10.0%
!!! AAATCAACTTTTTTTTTTCT+GGG + chr8_2:10839058-10839077 None:intergenic 15.0%
!!! AAAATCAACTTTTTTTTTTC+TGG + chr8_2:10839059-10839078 None:intergenic 15.0%
!! TATATATTTATAACTTTGCT+TGG - chr8_2:10840152-10840171 Msa1233820:intron 15.0%
!! CAAATGTCAAATATATATTT+CGG + chr8_2:10840329-10840348 None:intergenic 15.0%
!! TATATATTTATAACTTTGCT+TGG - chr8_2:10840152-10840171 Msa1233820:intron 15.0%
!! CAAATGTCAAATATATATTT+CGG + chr8_2:10840329-10840348 None:intergenic 15.0%
!! TAATAATAACTTAATTGATC+AGG - chr8_2:10842173-10842192 Msa1233820:intron 15.0%
!! AATAAAACAAATGTTAACTA+TGG - chr8_2:10843088-10843107 Msa1233820:intron 15.0%
!! TGTTTGAATTAACTTATTTA+AGG - chr8_2:10843211-10843230 Msa1233820:intron 15.0%
!! AAATATAAATACTATTCAGT+TGG - chr8_2:10844708-10844727 Msa1233820:intron 15.0%
!! TTGAATAGGTAATAAAAATA+AGG + chr8_2:10844736-10844755 None:intergenic 15.0%
!!! TTATTTTTCTCAAGAAATTC+TGG - chr8_2:10839083-10839102 Msa1233820:three_prime_UTR 20.0%
!!! TATTTTTCTCAAGAAATTCT+GGG - chr8_2:10839084-10839103 Msa1233820:three_prime_UTR 20.0%
!!! TCTTCTTTTTTCTGAATTTT+TGG + chr8_2:10839194-10839213 None:intergenic 20.0%
!!! TTTTACATTTGATTTGATGA+TGG - chr8_2:10839829-10839848 Msa1233820:CDS 20.0%
!!! AAATTTATCGATTTAATGCT+AGG - chr8_2:10839873-10839892 Msa1233820:CDS 20.0%
!!! TGTGTTTTTATAATCTTGTT+TGG - chr8_2:10840215-10840234 Msa1233820:intron 20.0%
!!! ACATTTGATTTGATGATTAT+TGG - chr8_2:10840342-10840361 Msa1233820:intron 20.0%
!!! TTTTACATTTGATTTGATGA+TGG - chr8_2:10839829-10839848 Msa1233820:CDS 20.0%
!!! AAATTTATCGATTTAATGCT+AGG - chr8_2:10839873-10839892 Msa1233820:CDS 20.0%
!!! TGTGTTTTTATAATCTTGTT+TGG - chr8_2:10840215-10840234 Msa1233820:intron 20.0%
!!! ACATTTGATTTGATGATTAT+TGG - chr8_2:10840342-10840361 Msa1233820:intron 20.0%
!!! TCATTTATTTTGTCTGTTAT+TGG - chr8_2:10841355-10841374 Msa1233820:intron 20.0%
!!! ATTTTCTTCATTTCATGAAA+TGG - chr8_2:10842301-10842320 Msa1233820:CDS 20.0%
!!! TTTTCTTCATTTCATGAAAT+GGG - chr8_2:10842302-10842321 Msa1233820:CDS 20.0%
!! TACAATTGCCTTAATATATT+TGG + chr8_2:10842376-10842395 None:intergenic 20.0%
!! TTCATAGTTTAAACAATAGA+AGG + chr8_2:10842606-10842625 None:intergenic 20.0%
!! TTCAGTATCTAAATTGAATT+TGG - chr8_2:10842833-10842852 Msa1233820:CDS 20.0%
!! CAAAACTTGAAATTGATATA+GGG - chr8_2:10843186-10843205 Msa1233820:intron 20.0%
!! TATTTGTAGTGTTCATATTT+AGG + chr8_2:10843757-10843776 None:intergenic 20.0%
!! AATATGAACACTACAAATAT+TGG - chr8_2:10843758-10843777 Msa1233820:intron 20.0%
!! AAATTTCTGAATGAATTCTT+CGG - chr8_2:10843867-10843886 Msa1233820:intron 20.0%
!! TTAATTAAGCACTTATAACT+TGG - chr8_2:10843996-10844015 Msa1233820:intron 20.0%
!!! TATTTTAACAACTTCAGATA+TGG - chr8_2:10844401-10844420 Msa1233820:intron 20.0%
!!! ATCTGTCTAAAGTTAAATAA+CGG - chr8_2:10844451-10844470 Msa1233820:intron 20.0%
!! CTTATAAATATAAGCTCTTT+CGG + chr8_2:10844854-10844873 None:intergenic 20.0%
!! TGTATTCTGATATCTTTAAA+TGG - chr8_2:10845229-10845248 Msa1233820:CDS 20.0%
!!! AAAACATTAGATTTGTTGTA+TGG - chr8_2:10845598-10845617 Msa1233820:CDS 20.0%
!!! TTTGTTGTATGGTAATTTTT+TGG - chr8_2:10845609-10845628 Msa1233820:CDS 20.0%
!!! TTTTGAGAGAAGAAATTGAT+GGG + chr8_2:10839028-10839047 None:intergenic 25.0%
!!! TTTTTGAGAGAAGAAATTGA+TGG + chr8_2:10839029-10839048 None:intergenic 25.0%
! AAAGAACAAGAAGAAAAACA+AGG - chr8_2:10839247-10839266 Msa1233820:three_prime_UTR 25.0%
!!! TTTTTAAGAAGAAGAGTACT+AGG - chr8_2:10839282-10839301 Msa1233820:three_prime_UTR 25.0%
!! GTTTGAAATTGAAGAAAGAA+GGG - chr8_2:10839450-10839469 Msa1233820:three_prime_UTR 25.0%
!!! CTTTTGGAGAAGTTTATAAA+AGG - chr8_2:10839588-10839607 Msa1233820:CDS 25.0%
! TGTATGTGTATTTATACCTT+TGG - chr8_2:10839627-10839646 Msa1233820:CDS 25.0%
!! TTGTTTGTCTTAATTTGATG+AGG - chr8_2:10839666-10839685 Msa1233820:CDS 25.0%
! GAAATTGAATGGTTATGATT+AGG - chr8_2:10839772-10839791 Msa1233820:CDS 25.0%
!! TGTTAGCATGTTTCTATAAT+TGG - chr8_2:10839906-10839925 Msa1233820:CDS 25.0%
!! TCTATACCTTTTATAAGAAC+AGG + chr8_2:10840074-10840093 None:intergenic 25.0%
!! AGAAAGCTTGTTCTTATAAA+AGG - chr8_2:10840109-10840128 Msa1233820:intron 25.0%
!! TTGATTTGATGATTATTGGT+TGG - chr8_2:10840346-10840365 Msa1233820:intron 25.0%
!! CGTTAACATGTTTCTATTAT+TGG - chr8_2:10840415-10840434 Msa1233820:intron 25.0%
!! TTGTTTGTCTTAATTTGATG+AGG - chr8_2:10839666-10839685 Msa1233820:CDS 25.0%
! GAAATTGAATGGTTATGATT+AGG - chr8_2:10839772-10839791 Msa1233820:CDS 25.0%
!! TGTTAGCATGTTTCTATAAT+TGG - chr8_2:10839906-10839925 Msa1233820:CDS 25.0%
!! TCTATACCTTTTATAAGAAC+AGG + chr8_2:10840074-10840093 None:intergenic 25.0%
!! AGAAAGCTTGTTCTTATAAA+AGG - chr8_2:10840109-10840128 Msa1233820:intron 25.0%
!! TTGATTTGATGATTATTGGT+TGG - chr8_2:10840346-10840365 Msa1233820:intron 25.0%
!! CGTTAACATGTTTCTATTAT+TGG - chr8_2:10840415-10840434 Msa1233820:intron 25.0%
! TAAATGAAGATCAGAATCAA+AGG + chr8_2:10841454-10841473 None:intergenic 25.0%
! TTTGATTCTGATCTTCATTT+AGG - chr8_2:10841453-10841472 Msa1233820:intron 25.0%
! ACTGTTCAATTTGAAAGTAA+AGG - chr8_2:10841609-10841628 Msa1233820:intron 25.0%
! CTGTTCAATTTGAAAGTAAA+GGG - chr8_2:10841610-10841629 Msa1233820:intron 25.0%
! GATATTATTTGTCTCACAAA+AGG + chr8_2:10841665-10841684 None:intergenic 25.0%
! TGAAGAAAAAACTATGTACA+TGG - chr8_2:10842039-10842058 Msa1233820:intron 25.0%
!!! AGTGTTCTGAAATAAAAACT+CGG + chr8_2:10842132-10842151 None:intergenic 25.0%
!! TTGGTGTTCCAAATATATTA+AGG - chr8_2:10842365-10842384 Msa1233820:CDS 25.0%
! ATTAAGGCAATTGTAAACAT+CGG - chr8_2:10842381-10842400 Msa1233820:CDS 25.0%
! AATTTGTGTTTCCAATTCAA+AGG + chr8_2:10842765-10842784 None:intergenic 25.0%
! GCAAAACTTGAAATTGATAT+AGG - chr8_2:10843185-10843204 Msa1233820:intron 25.0%
! ACAAGAAAACTGGTAAAATA+AGG + chr8_2:10843480-10843499 None:intergenic 25.0%
!! TGATTTTGAACTCACAAATA+TGG + chr8_2:10843932-10843951 None:intergenic 25.0%
!! AACTGTTTTATAAGCTATAC+TGG - chr8_2:10844105-10844124 Msa1233820:intron 25.0%
! ATCCAAACAGATAATTTCTT+TGG - chr8_2:10844219-10844238 Msa1233820:intron 25.0%
! ATCCAAAGAAATTATCTGTT+TGG + chr8_2:10844224-10844243 None:intergenic 25.0%
! AACAGATAATTTCTTTGGAT+TGG - chr8_2:10844224-10844243 Msa1233820:intron 25.0%
! TTTGACAGAAATTATGACTT+TGG - chr8_2:10844299-10844318 Msa1233820:intron 25.0%
! ATCCAAACTGTATGTTTATA+TGG + chr8_2:10844328-10844347 None:intergenic 25.0%
! CTAAATTTCATCATGAATGA+TGG + chr8_2:10844539-10844558 None:intergenic 25.0%
! GAATTTGTGAATATTGACAA+TGG - chr8_2:10844634-10844653 Msa1233820:intron 25.0%
! AAGACATCAATCAATTGAAT+AGG + chr8_2:10844750-10844769 None:intergenic 25.0%
! ATTGATTGAAGATGTTATGA+GGG - chr8_2:10845164-10845183 Msa1233820:CDS 25.0%
TTTGAGAGAAGAAATTGATG+GGG + chr8_2:10839027-10839046 None:intergenic 30.0%
!! TGAATCGATTTTAAGGACTA+TGG - chr8_2:10839109-10839128 Msa1233820:three_prime_UTR 30.0%
TTGGTTGCATTTGTACTTTA+TGG - chr8_2:10839336-10839355 Msa1233820:three_prime_UTR 30.0%
TCTTTCTTCAATTTCAAACC+AGG + chr8_2:10839449-10839468 None:intergenic 30.0%
! GGTTTGAAATTGAAGAAAGA+AGG - chr8_2:10839449-10839468 Msa1233820:three_prime_UTR 30.0%
ATTGTTTAGGAAGAGATTGT+GGG - chr8_2:10839559-10839578 Msa1233820:CDS 30.0%
TGTGTATTTATACCTTTGGT+TGG - chr8_2:10839631-10839650 Msa1233820:CDS 30.0%
! TCTTAATTTGATGAGGTTGA+TGG - chr8_2:10839673-10839692 Msa1233820:CDS 30.0%
!! GGTGTTTTTATTGTCTTGTT+TGG - chr8_2:10839694-10839713 Msa1233820:CDS 30.0%
! TCTTGTTTGGTATTGTTTAG+TGG - chr8_2:10839707-10839726 Msa1233820:CDS 30.0%
! TGGTATTGTTTAGTGGTTTT+TGG - chr8_2:10839714-10839733 Msa1233820:CDS 30.0%
!!! TGTTTAGTGGTTTTTGGTAT+TGG - chr8_2:10839720-10839739 Msa1233820:CDS 30.0%
! TGCTGTGATTTGAAATTGAA+TGG - chr8_2:10839761-10839780 Msa1233820:CDS 30.0%
TTGAATGGTTATGATTAGGA+TGG - chr8_2:10839776-10839795 Msa1233820:CDS 30.0%
!! ACATTTGATTTGATGATGGT+TGG - chr8_2:10839833-10839852 Msa1233820:CDS 30.0%
! TAGCATGTTTCTATAATTGG+TGG - chr8_2:10839909-10839928 Msa1233820:CDS 30.0%
! CACTAGTAAATGATTTGGAA+AGG - chr8_2:10839935-10839954 Msa1233820:CDS 30.0%
! GGAAAGGAACTTATGTTTTA+TGG - chr8_2:10839951-10839970 Msa1233820:intron 30.0%
AGAAAGCCTGTTCTTATAAA+AGG - chr8_2:10840065-10840084 Msa1233820:intron 30.0%
!!! TCTTGTTTGGTTTTGTTTAG+TGG - chr8_2:10840228-10840247 Msa1233820:intron 30.0%
! TTTGTGAGTGTGTTGTTATT+TGG - chr8_2:10840251-10840270 Msa1233820:intron 30.0%
GGAATTGATTGATTATGATG+AGG - chr8_2:10840272-10840291 Msa1233820:intron 30.0%
TTGATTGATTATGATGAGGA+TGG - chr8_2:10840276-10840295 Msa1233820:intron 30.0%
TCTATTATTGGTGAAGACAT+TGG - chr8_2:10840427-10840446 Msa1233820:intron 30.0%
! TCTTAATTTGATGAGGTTGA+TGG - chr8_2:10839673-10839692 Msa1233820:CDS 30.0%
!! GGTGTTTTTATTGTCTTGTT+TGG - chr8_2:10839694-10839713 Msa1233820:CDS 30.0%
! TCTTGTTTGGTATTGTTTAG+TGG - chr8_2:10839707-10839726 Msa1233820:CDS 30.0%
! TGGTATTGTTTAGTGGTTTT+TGG - chr8_2:10839714-10839733 Msa1233820:CDS 30.0%
!!! TGTTTAGTGGTTTTTGGTAT+TGG - chr8_2:10839720-10839739 Msa1233820:CDS 30.0%
! TGCTGTGATTTGAAATTGAA+TGG - chr8_2:10839761-10839780 Msa1233820:CDS 30.0%
TTGAATGGTTATGATTAGGA+TGG - chr8_2:10839776-10839795 Msa1233820:CDS 30.0%
!! ACATTTGATTTGATGATGGT+TGG - chr8_2:10839833-10839852 Msa1233820:CDS 30.0%
! TAGCATGTTTCTATAATTGG+TGG - chr8_2:10839909-10839928 Msa1233820:CDS 30.0%
! CACTAGTAAATGATTTGGAA+AGG - chr8_2:10839935-10839954 Msa1233820:CDS 30.0%
! GGAAAGGAACTTATGTTTTA+TGG - chr8_2:10839951-10839970 Msa1233820:intron 30.0%
AGAAAGCCTGTTCTTATAAA+AGG - chr8_2:10840065-10840084 Msa1233820:intron 30.0%
!!! TCTTGTTTGGTTTTGTTTAG+TGG - chr8_2:10840228-10840247 Msa1233820:intron 30.0%
! TTTGTGAGTGTGTTGTTATT+TGG - chr8_2:10840251-10840270 Msa1233820:intron 30.0%
GGAATTGATTGATTATGATG+AGG - chr8_2:10840272-10840291 Msa1233820:intron 30.0%
TTGATTGATTATGATGAGGA+TGG - chr8_2:10840276-10840295 Msa1233820:intron 30.0%
TCTATTATTGGTGAAGACAT+TGG - chr8_2:10840427-10840446 Msa1233820:intron 30.0%
! GTCTGTTATTGGATTTTACT+TGG - chr8_2:10841366-10841385 Msa1233820:intron 30.0%
GATCAGAATCAAAGGTTTAA+AGG + chr8_2:10841446-10841465 None:intergenic 30.0%
ATTGTGAGTACTTGATTGAT+TGG - chr8_2:10841543-10841562 Msa1233820:intron 30.0%
AATATCATTTCAGAACACTG+AGG - chr8_2:10842078-10842097 Msa1233820:intron 30.0%
ATAACTTAATTGATCAGGTG+CGG - chr8_2:10842178-10842197 Msa1233820:intron 30.0%
AAAAAGCAACATAGAACTCA+TGG - chr8_2:10842221-10842240 Msa1233820:intron 30.0%
GTTATTATTCCACATTCGAT+GGG - chr8_2:10842270-10842289 Msa1233820:intron 30.0%
TTATTATTCCACATTCGATG+GGG - chr8_2:10842271-10842290 Msa1233820:intron 30.0%
! ATATATTTGGAACACCAATC+TGG + chr8_2:10842363-10842382 None:intergenic 30.0%
TGCAAGGTATATCTTCTTTA+TGG - chr8_2:10842473-10842492 Msa1233820:CDS 30.0%
ACACAAATTCTGATTGCATT+TGG - chr8_2:10842776-10842795 Msa1233820:CDS 30.0%
ATATCGTTATCTAAAAACCC+TGG + chr8_2:10842884-10842903 None:intergenic 30.0%
TATGGAAGAATGATATCGTT+TGG - chr8_2:10843106-10843125 Msa1233820:intron 30.0%
!! AGATCGATATTGTTGACTTT+CGG - chr8_2:10843158-10843177 Msa1233820:intron 30.0%
! ACTTATTTAAGGTCATCTAC+CGG - chr8_2:10843222-10843241 Msa1233820:intron 30.0%
AATTAAGCTGTTTATCCAAC+AGG - chr8_2:10843428-10843447 Msa1233820:intron 30.0%
ATTAAGCTGTTTATCCAACA+GGG - chr8_2:10843429-10843448 Msa1233820:intron 30.0%
CACCATATAAACATACAGTT+TGG - chr8_2:10844323-10844342 Msa1233820:intron 30.0%
! ATCATTATTTTCTCTCACCT+CGG - chr8_2:10844353-10844372 Msa1233820:intron 30.0%
!! GTAGACTAAACTTATTTCTG+AGG + chr8_2:10844501-10844520 None:intergenic 30.0%
TAATTGGAACATATCAAGAG+CGG + chr8_2:10844602-10844621 None:intergenic 30.0%
CAACTGTTAATAATATCGAC+AGG - chr8_2:10844773-10844792 Msa1233820:intron 30.0%
ATGGAAATCTTCTCTCTATA+TGG - chr8_2:10844814-10844833 Msa1233820:intron 30.0%
TAAATATAAGCTCTTTCGGT+TGG + chr8_2:10844850-10844869 None:intergenic 30.0%
TTCAAAAGGAATGTAACACT+CGG + chr8_2:10844890-10844909 None:intergenic 30.0%
GCATTAGGATCAATTTCAAA+AGG + chr8_2:10844904-10844923 None:intergenic 30.0%
AAAGTTAGTTGTCTGAAAGA+TGG - chr8_2:10844937-10844956 Msa1233820:intron 30.0%
AAAACAAGATTCAATCCTTC+AGG - chr8_2:10845036-10845055 Msa1233820:intron 30.0%
AAACAAGATTCAATCCTTCA+GGG - chr8_2:10845037-10845056 Msa1233820:intron 30.0%
! CATTGATTGAAGATGTTATG+AGG - chr8_2:10845163-10845182 Msa1233820:CDS 30.0%
CAAAGGTAACTTGATTCTAT+CGG + chr8_2:10845256-10845275 None:intergenic 30.0%
! TGTGTCTATTTCTTTCTTAC+CGG - chr8_2:10845365-10845384 Msa1233820:CDS 30.0%
GTGTGAGTGAGAATTGAAAA+GGG + chr8_2:10838986-10839005 None:intergenic 35.0%
!! CTGGGTTTGAATCGATTTTA+AGG - chr8_2:10839102-10839121 Msa1233820:three_prime_UTR 35.0%
CTTTGATCCGAAGAAGAAAA+GGG - chr8_2:10839132-10839151 Msa1233820:three_prime_UTR 35.0%
! TTTTCGCTATTACCCTTTTC+TGG + chr8_2:10839164-10839183 None:intergenic 35.0%
!! TTAAGAAGAAGAGTACTAGG+TGG - chr8_2:10839285-10839304 Msa1233820:three_prime_UTR 35.0%
GTTGCATTTGTACTTTATGG+TGG - chr8_2:10839339-10839358 Msa1233820:three_prime_UTR 35.0%
TTCTTCAATTTCAAACCAGG+TGG + chr8_2:10839446-10839465 None:intergenic 35.0%
GATTGTTTAGGAAGAGATTG+TGG - chr8_2:10839558-10839577 Msa1233820:CDS 35.0%
TTGTTTAGGAAGAGATTGTG+GGG - chr8_2:10839560-10839579 Msa1233820:CDS 35.0%
!! TTTGATTTGATGATGGTTGG+TGG - chr8_2:10839836-10839855 Msa1233820:CDS 35.0%
!! TTGATTTGATGATGGTTGGT+GGG - chr8_2:10839837-10839856 Msa1233820:CDS 35.0%
TCGATTTAATGCTAGGTTGT+TGG - chr8_2:10839880-10839899 Msa1233820:CDS 35.0%
GGAGACACTAGTAAATGATT+TGG - chr8_2:10839930-10839949 Msa1233820:CDS 35.0%
! TATGGTATTGTTGCTTGAGA+TGG - chr8_2:10839969-10839988 Msa1233820:intron 35.0%
GATGGTTAATTCTTGCTCTT+TGG - chr8_2:10839987-10840006 Msa1233820:intron 35.0%
ATAACTTTGCTTGGTTGTGT+TGG - chr8_2:10840161-10840180 Msa1233820:intron 35.0%
ATTATGATGAGGATGGTGAT+TGG - chr8_2:10840283-10840302 Msa1233820:intron 35.0%
!! ACACTTGTCGATTTAATGCT+AGG - chr8_2:10840382-10840401 Msa1233820:intron 35.0%
TCGATTTAATGCTAGGTTGT+TGG - chr8_2:10839880-10839899 Msa1233820:CDS 35.0%
TTATTGGTGAAGACATTGGA+AGG - chr8_2:10840431-10840450 Msa1233820:intron 35.0%
!! TTTGATTTGATGATGGTTGG+TGG - chr8_2:10839836-10839855 Msa1233820:CDS 35.0%
!! TTGATTTGATGATGGTTGGT+GGG - chr8_2:10839837-10839856 Msa1233820:CDS 35.0%
TCGATTTAATGCTAGGTTGT+TGG - chr8_2:10839880-10839899 Msa1233820:CDS 35.0%
GGAGACACTAGTAAATGATT+TGG - chr8_2:10839930-10839949 Msa1233820:CDS 35.0%
! TATGGTATTGTTGCTTGAGA+TGG - chr8_2:10839969-10839988 Msa1233820:intron 35.0%
GATGGTTAATTCTTGCTCTT+TGG - chr8_2:10839987-10840006 Msa1233820:intron 35.0%
ATAACTTTGCTTGGTTGTGT+TGG - chr8_2:10840161-10840180 Msa1233820:intron 35.0%
ATTATGATGAGGATGGTGAT+TGG - chr8_2:10840283-10840302 Msa1233820:intron 35.0%
!! ACACTTGTCGATTTAATGCT+AGG - chr8_2:10840382-10840401 Msa1233820:intron 35.0%
TCGATTTAATGCTAGGTTGT+TGG - chr8_2:10839880-10839899 Msa1233820:CDS 35.0%
TTATTGGTGAAGACATTGGA+AGG - chr8_2:10840431-10840450 Msa1233820:intron 35.0%
AAGACATTGGAAGGATGATT+TGG - chr8_2:10841247-10841266 Msa1233820:intron 35.0%
! ATTGGAAGGATGATTTGGAA+GGG - chr8_2:10841252-10841271 Msa1233820:intron 35.0%
GATAATGTGATTGCTTGTGA+TGG - chr8_2:10841302-10841321 Msa1233820:intron 35.0%
!! ATTTTTGCTTTCTGCTGACT+TGG - chr8_2:10841328-10841347 Msa1233820:intron 35.0%
ACAGTGATCTAACATTACAC+AGG + chr8_2:10841420-10841439 None:intergenic 35.0%
! ACAGTGTTATAAGCCTTATC+TGG + chr8_2:10841745-10841764 None:intergenic 35.0%
GACAAATATTGCACTAGTGA+TGG + chr8_2:10841771-10841790 None:intergenic 35.0%
ACCATTTCTACGTCTATGAT+GGG + chr8_2:10841821-10841840 None:intergenic 35.0%
TACCATTTCTACGTCTATGA+TGG + chr8_2:10841822-10841841 None:intergenic 35.0%
GGTCTGTAACACACAAAAAT+AGG + chr8_2:10841860-10841879 None:intergenic 35.0%
TAACTTAATTGATCAGGTGC+GGG - chr8_2:10842179-10842198 Msa1233820:intron 35.0%
! TTCCACTAATGGTGGAAATA+AGG - chr8_2:10842245-10842264 Msa1233820:intron 35.0%
GGTTATTATTCCACATTCGA+TGG - chr8_2:10842269-10842288 Msa1233820:intron 35.0%
TATTATTCCACATTCGATGG+GGG - chr8_2:10842272-10842291 Msa1233820:intron 35.0%
!!! ACCATTTTTAGGTGTTCCAA+AGG - chr8_2:10842407-10842426 Msa1233820:CDS 35.0%
ATGTAACCTAGTAACTAGCA+TGG + chr8_2:10842499-10842518 None:intergenic 35.0%
! AGGTTACATGATGACTTGTA+TGG - chr8_2:10842510-10842529 Msa1233820:CDS 35.0%
! GGTTACATGATGACTTGTAT+GGG - chr8_2:10842511-10842530 Msa1233820:CDS 35.0%
AAGATCTCTCTCCTTTGAAT+TGG - chr8_2:10842751-10842770 Msa1233820:CDS 35.0%
!! AATTTGGTTCTTTCGTCACA+AGG - chr8_2:10842849-10842868 Msa1233820:CDS 35.0%
!! ATTTGGTTCTTTCGTCACAA+GGG - chr8_2:10842850-10842869 Msa1233820:CDS 35.0%
CATGTTGCAATGTTTGAATG+CGG + chr8_2:10842910-10842929 None:intergenic 35.0%
!! GATCGATATTGTTGACTTTC+GGG - chr8_2:10843159-10843178 Msa1233820:intron 35.0%
ATGAGACAGAACAAGAAAAC+TGG + chr8_2:10843490-10843509 None:intergenic 35.0%
! ACACTCAGGTTTTTGTTAAC+AGG - chr8_2:10843519-10843538 Msa1233820:intron 35.0%
! CACTCAGGTTTTTGTTAACA+GGG - chr8_2:10843520-10843539 Msa1233820:intron 35.0%
TGTTAACAGGGTGCAATTAA+AGG - chr8_2:10843532-10843551 Msa1233820:intron 35.0%
!! CAAGAGGTATTTGCAACATT+GGG + chr8_2:10843559-10843578 None:intergenic 35.0%
!! ACAAGAGGTATTTGCAACAT+TGG + chr8_2:10843560-10843579 None:intergenic 35.0%
TGGACTGAATACCATGATAT+GGG - chr8_2:10843589-10843608 Msa1233820:intron 35.0%
GAACATAAAGTTTACACAGC+TGG - chr8_2:10843637-10843656 Msa1233820:intron 35.0%
! GTTTGTTGCTCCTAAAATGA+TGG - chr8_2:10843681-10843700 Msa1233820:intron 35.0%
GGTAGTGATCATTTCTCTTA+TGG - chr8_2:10843709-10843728 Msa1233820:intron 35.0%
CAAATATTGGTCAAACCCAT+TGG - chr8_2:10843771-10843790 Msa1233820:intron 35.0%
AATCTCACTTTGTCTCCAAT+GGG + chr8_2:10843789-10843808 None:intergenic 35.0%
AAATCTCACTTTGTCTCCAA+TGG + chr8_2:10843790-10843809 None:intergenic 35.0%
TTTCTGAATGAATTCTTCGG+TGG - chr8_2:10843870-10843889 Msa1233820:intron 35.0%
GATACTTATAGGCTCTGTTT+AGG - chr8_2:10843965-10843984 Msa1233820:intron 35.0%
ATACTAGTATAAGCGCTTGT+GGG + chr8_2:10844181-10844200 None:intergenic 35.0%
AATACTAGTATAAGCGCTTG+TGG + chr8_2:10844182-10844201 None:intergenic 35.0%
AACAACTTCAGATATGGTGT+TGG - chr8_2:10844407-10844426 Msa1233820:intron 35.0%
GGTGTATCTAATACTGTGTT+TGG + chr8_2:10844480-10844499 None:intergenic 35.0%
AGAGAAGATTTCCATATCAG+GGG + chr8_2:10844809-10844828 None:intergenic 35.0%
GAGAGAAGATTTCCATATCA+GGG + chr8_2:10844810-10844829 None:intergenic 35.0%
AGAGAGAAGATTTCCATATC+AGG + chr8_2:10844811-10844830 None:intergenic 35.0%
ATCTTCTCTCTATATGGAGT+TGG - chr8_2:10844820-10844839 Msa1233820:intron 35.0%
CATATTCTCGAACATAAGTG+CGG + chr8_2:10845065-10845084 None:intergenic 35.0%
GGTGCTCATGTTGATATAAT+GGG - chr8_2:10845132-10845151 Msa1233820:intron 35.0%
AGAATCAAGTTACCTTTGTG+AGG - chr8_2:10845258-10845277 Msa1233820:CDS 35.0%
GAATCAAGTTACCTTTGTGA+GGG - chr8_2:10845259-10845278 Msa1233820:CDS 35.0%
AATCAAGTTACCTTTGTGAG+GGG - chr8_2:10845260-10845279 Msa1233820:CDS 35.0%
! CCTTTAGAGAAATGAAAGAG+TGG + chr8_2:10845440-10845459 None:intergenic 35.0%
CCACTCTTTCATTTCTCTAA+AGG - chr8_2:10845437-10845456 Msa1233820:CDS 35.0%
GAAATTCTGAGTGCATCTTA+TGG + chr8_2:10845518-10845537 None:intergenic 35.0%
TAAGATGCACTCAGAATTTC+TGG - chr8_2:10845518-10845537 Msa1233820:CDS 35.0%
CATATTTGTCAGATGCTTCA+TGG - chr8_2:10845636-10845655 Msa1233820:five_prime_UTR 35.0%
GGTGTGAGTGAGAATTGAAA+AGG + chr8_2:10838987-10839006 None:intergenic 40.0%
GCTTTGATCCGAAGAAGAAA+AGG - chr8_2:10839131-10839150 Msa1233820:three_prime_UTR 40.0%
! GTTCTGACCCTTTTCTTCTT+CGG + chr8_2:10839142-10839161 None:intergenic 40.0%
AAAAGGGTCAGAACCAGAAA+AGG - chr8_2:10839148-10839167 Msa1233820:three_prime_UTR 40.0%
AAAGGGTCAGAACCAGAAAA+GGG - chr8_2:10839149-10839168 Msa1233820:three_prime_UTR 40.0%
CAAGAAGAAAAACAAGGACG+AGG - chr8_2:10839253-10839272 Msa1233820:three_prime_UTR 40.0%
! CTTGTGTTGACAGTTGTTGT+TGG - chr8_2:10839309-10839328 Msa1233820:three_prime_UTR 40.0%
!! GACAGTTGTTGTTGGTTTGT+TGG - chr8_2:10839317-10839336 Msa1233820:three_prime_UTR 40.0%
ACATACTGAGGAAATGAAGC+TGG + chr8_2:10839392-10839411 None:intergenic 40.0%
ATTTCCTCAGTATGTCACTG+AGG - chr8_2:10839397-10839416 Msa1233820:three_prime_UTR 40.0%
TATGTCACTGAGGCTATTAC+TGG - chr8_2:10839407-10839426 Msa1233820:three_prime_UTR 40.0%
AATTTCAAACCAGGTGGATC+AGG + chr8_2:10839440-10839459 None:intergenic 40.0%
AGTGTGCTGAAGGATTGTTT+AGG - chr8_2:10839546-10839565 Msa1233820:CDS 40.0%
! ATACCTTTGGTTGGTTGTGT+TGG - chr8_2:10839640-10839659 Msa1233820:CDS 40.0%
AAACCAACACAACCAACCAA+AGG + chr8_2:10839646-10839665 None:intergenic 40.0%
! ATTCTTGCTCTTTGGAGACT+TGG - chr8_2:10839995-10840014 Msa1233820:intron 40.0%
!! TTATTGGTTGGTGAGCTGTT+TGG - chr8_2:10840358-10840377 Msa1233820:intron 40.0%
! ATTCTTGCTCTTTGGAGACT+TGG - chr8_2:10839995-10840014 Msa1233820:intron 40.0%
!! TTATTGGTTGGTGAGCTGTT+TGG - chr8_2:10840358-10840377 Msa1233820:intron 40.0%
! CATTGGAAGGATGATTTGGA+AGG - chr8_2:10841251-10841270 Msa1233820:intron 40.0%
! GAACTCCTCTTTTGTGGTAT+TGG - chr8_2:10841274-10841293 Msa1233820:intron 40.0%
AAGCACCAATACCACAAAAG+AGG + chr8_2:10841282-10841301 None:intergenic 40.0%
TTTCCATGTCCATTTGTGAG+TGG - chr8_2:10841582-10841601 Msa1233820:intron 40.0%
ACAGTACTTCCACTCACAAA+TGG + chr8_2:10841594-10841613 None:intergenic 40.0%
CCTTATCTGGACAATCAGTT+AGG + chr8_2:10841732-10841751 None:intergenic 40.0%
CCTAACTGATTGTCCAGATA+AGG - chr8_2:10841729-10841748 Msa1233820:CDS 40.0%
TCCCATCATAGACGTAGAAA+TGG - chr8_2:10841817-10841836 Msa1233820:CDS 40.0%
CATTCCTGTTTCATTGTCGA+GGG + chr8_2:10841906-10841925 None:intergenic 40.0%
TGTACATGGCTGCATATGAT+TGG - chr8_2:10842053-10842072 Msa1233820:intron 40.0%
GAACTCATGGTTTCCACTAA+TGG - chr8_2:10842234-10842253 Msa1233820:intron 40.0%
! CACTAATGGTGGAAATAAGG+CGG - chr8_2:10842248-10842267 Msa1233820:intron 40.0%
TATAAAACCCCCATCGAATG+TGG + chr8_2:10842282-10842301 None:intergenic 40.0%
AAGGCAATTGTAAACATCGG+TGG - chr8_2:10842384-10842403 Msa1233820:CDS 40.0%
!! AACATCGGTGGACCATTTTT+AGG - chr8_2:10842396-10842415 Msa1233820:CDS 40.0%
!! GCCTTTGGAACACCTAAAAA+TGG + chr8_2:10842411-10842430 None:intergenic 40.0%
TTATGGCCATGCTAGTTACT+AGG - chr8_2:10842490-10842509 Msa1233820:CDS 40.0%
GAGTATAACACTGTTGAACC+AGG + chr8_2:10842542-10842561 None:intergenic 40.0%
!! AAACTATGAAGCACTGACAC+TGG - chr8_2:10842616-10842635 Msa1233820:intron 40.0%
TTATGAAGATGACTCGCACT+TGG - chr8_2:10842930-10842949 Msa1233820:intron 40.0%
TATGAAGATGACTCGCACTT+GGG - chr8_2:10842931-10842950 Msa1233820:intron 40.0%
AGTCTCACAAGTGCTTATAC+CGG + chr8_2:10843244-10843263 None:intergenic 40.0%
AAGCTATCATGAAGAGCTTG+TGG + chr8_2:10843291-10843310 None:intergenic 40.0%
TAAGCACACAAGACAATGCA+GGG + chr8_2:10843455-10843474 None:intergenic 40.0%
ATAAGCACACAAGACAATGC+AGG + chr8_2:10843456-10843475 None:intergenic 40.0%
CTCATTTGTACTTGACACTC+AGG - chr8_2:10843505-10843524 Msa1233820:intron 40.0%
! GTGGACTGAATACCATGATA+TGG - chr8_2:10843588-10843607 Msa1233820:intron 40.0%
CATTCGTCGACGATACTTAT+AGG - chr8_2:10843954-10843973 Msa1233820:intron 40.0%
AAGCTATACTGGAGAGCTTA+TGG - chr8_2:10844116-10844135 Msa1233820:intron 40.0%
GGATTGTGTGAGATAGCTTA+TGG + chr8_2:10844160-10844179 None:intergenic 40.0%
!! CTTTGGATTGGCGTTGAAAA+AGG - chr8_2:10844236-10844255 Msa1233820:intron 40.0%
! TTATTTTCTCTCACCTCGGA+TGG - chr8_2:10844357-10844376 Msa1233820:intron 40.0%
GCTAGTAAATATTCCATCCG+AGG + chr8_2:10844373-10844392 None:intergenic 40.0%
TTGGAAAGATGATGACCTGA+GGG + chr8_2:10844685-10844704 None:intergenic 40.0%
!! ATTTCCATATCAGGGGCATT+TGG + chr8_2:10844802-10844821 None:intergenic 40.0%
TATAAGCTCTTTCGGTTGGT+AGG + chr8_2:10844846-10844865 None:intergenic 40.0%
GAAATTGATCCTAATGCCGA+TGG - chr8_2:10844907-10844926 Msa1233820:intron 40.0%
ACTAACTTTGTCACCACCAT+CGG + chr8_2:10844926-10844945 None:intergenic 40.0%
ATGTAGCCTGAACTTAGAAC+TGG + chr8_2:10844994-10845013 None:intergenic 40.0%
CGGTGCTCATGTTGATATAA+TGG - chr8_2:10845131-10845150 Msa1233820:intron 40.0%
AGAAGAATTGGGAGGTGATA+AGG - chr8_2:10845206-10845225 Msa1233820:CDS 40.0%
!!! TTTTGGAACCATCCAGTAAC+GGG + chr8_2:10845298-10845317 None:intergenic 40.0%
!!! CTTTTGGAACCATCCAGTAA+CGG + chr8_2:10845299-10845318 None:intergenic 40.0%
ATTCTGCTTTACTCGCAAAG+GGG + chr8_2:10845411-10845430 None:intergenic 40.0%
CATTCTGCTTTACTCGCAAA+GGG + chr8_2:10845412-10845431 None:intergenic 40.0%
CAAATTCAGATTCCAGTGAG+TGG - chr8_2:10845551-10845570 Msa1233820:CDS 40.0%
GGGGTTACGTTATTCTTCGA+AGG + chr8_2:10839008-10839027 None:intergenic 45.0%
ATAGCCTCAGTGACATACTG+AGG + chr8_2:10839404-10839423 None:intergenic 45.0%
! GTTAAGTGTGAAGCATCCAG+TGG - chr8_2:10839472-10839491 Msa1233820:exon 45.0%
! CATCCAGTGGTTTTTGTTCC+CGG - chr8_2:10839485-10839504 Msa1233820:CDS 45.0%
! ATCCAGTGGTTTTTGTTCCC+GGG - chr8_2:10839486-10839505 Msa1233820:CDS 45.0%
TTTGTTCCCGGGATTGTTAC+CGG - chr8_2:10839497-10839516 Msa1233820:CDS 45.0%
! TTACCGGTGGACTTGAACTT+TGG - chr8_2:10839513-10839532 Msa1233820:CDS 45.0%
! TACCGGTGGACTTGAACTTT+GGG - chr8_2:10839514-10839533 Msa1233820:CDS 45.0%
TTTAGGAAGAGATTGTGGGG+TGG - chr8_2:10839563-10839582 Msa1233820:CDS 45.0%
! AGATTGTGGGGTGGTACTTT+TGG - chr8_2:10839572-10839591 Msa1233820:CDS 45.0%
GAAGACATTGGAAGGATGCT+AGG - chr8_2:10840439-10840458 Msa1233820:intron 45.0%
CTTCCACTCACAAATGGACA+TGG + chr8_2:10841588-10841607 None:intergenic 45.0%
TGTGTTACAGACCTTCATGC+TGG - chr8_2:10841867-10841886 Msa1233820:intron 45.0%
GTGTTACAGACCTTCATGCT+GGG - chr8_2:10841868-10841887 Msa1233820:intron 45.0%
ATGTCCCTCGACAATGAAAC+AGG - chr8_2:10841899-10841918 Msa1233820:intron 45.0%
CCATTCCTGTTTCATTGTCG+AGG + chr8_2:10841907-10841926 None:intergenic 45.0%
CCTCGACAATGAAACAGGAA+TGG - chr8_2:10841904-10841923 Msa1233820:intron 45.0%
TTGCCGCAGGATACTTTGTT+TGG - chr8_2:10841981-10842000 Msa1233820:intron 45.0%
! TGCCGCAGGATACTTTGTTT+GGG - chr8_2:10841982-10842001 Msa1233820:intron 45.0%
TGCGTGCCAAGTTAGCAATT+AGG + chr8_2:10842012-10842031 None:intergenic 45.0%
ATTGCTAACTTGGCACGCAT+CGG - chr8_2:10842013-10842032 Msa1233820:intron 45.0%
TGCGGGATCAAACACTAAGT+CGG - chr8_2:10842196-10842215 Msa1233820:intron 45.0%
CTCATGGTTTCCACTAATGG+TGG - chr8_2:10842237-10842256 Msa1233820:intron 45.0%
!! CGCCTTATTTCCACCATTAG+TGG + chr8_2:10842250-10842269 None:intergenic 45.0%
GTGTTCCAAAGGCTATAGCA+GGG - chr8_2:10842418-10842437 Msa1233820:CDS 45.0%
AAAAGCCCTGCTATAGCCTT+TGG + chr8_2:10842426-10842445 None:intergenic 45.0%
ACCTTGCAACAGCAATGTCT+CGG + chr8_2:10842461-10842480 None:intergenic 45.0%
GTGTTTGACACTGACACAAG+CGG + chr8_2:10842661-10842680 None:intergenic 45.0%
CTTGTGTCAGTGTCAAACAC+CGG - chr8_2:10842661-10842680 Msa1233820:CDS 45.0%
GTCAATGATACCAAAGGGAG+GGG - chr8_2:10842964-10842983 Msa1233820:intron 45.0%
TTTCCTCTGGTGACCAATCA+AGG + chr8_2:10843006-10843025 None:intergenic 45.0%
TGCTTTGCTTTCTCGTGTGA+AGG + chr8_2:10843036-10843055 None:intergenic 45.0%
ATACCTCTTGTCGTGATGTG+TGG - chr8_2:10843569-10843588 Msa1233820:intron 45.0%
ATACCATGATATGGGAGTCG+AGG - chr8_2:10843597-10843616 Msa1233820:intron 45.0%
TACCATGATATGGGAGTCGA+GGG - chr8_2:10843598-10843617 Msa1233820:intron 45.0%
TAGGAGCAACAAACTGAAGC+AGG + chr8_2:10843675-10843694 None:intergenic 45.0%
CTTGGAAAGATGATGACCTG+AGG + chr8_2:10844686-10844705 None:intergenic 45.0%
GTTACCAAATGCCCCTGATA+TGG - chr8_2:10844795-10844814 Msa1233820:intron 45.0%
GGAATGTAACACTCGGCAAA+GGG + chr8_2:10844883-10844902 None:intergenic 45.0%
AGGAATGTAACACTCGGCAA+AGG + chr8_2:10844884-10844903 None:intergenic 45.0%
ATTGATCCTAATGCCGATGG+TGG - chr8_2:10844910-10844929 Msa1233820:intron 45.0%
GATGGTGTCTACACTGTTGA+TGG - chr8_2:10844955-10844974 Msa1233820:intron 45.0%
!! ACCGTTCCAGTTCTAAGTTC+AGG - chr8_2:10844985-10845004 Msa1233820:intron 45.0%
GCCTGAACTTAGAACTGGAA+CGG + chr8_2:10844989-10845008 None:intergenic 45.0%
TCAGGCTACATGTGTGCTAA+AGG - chr8_2:10845003-10845022 Msa1233820:intron 45.0%
GCTACATGTGTGCTAAAGGT+TGG - chr8_2:10845007-10845026 Msa1233820:intron 45.0%
GAAGGTAGAGGAACACAAAG+CGG - chr8_2:10845111-10845130 Msa1233820:intron 45.0%
AGGAGCCAAAGGAGAAGAAT+TGG - chr8_2:10845194-10845213 Msa1233820:CDS 45.0%
GGAGCCAAAGGAGAAGAATT+GGG - chr8_2:10845195-10845214 Msa1233820:CDS 45.0%
ACCTCCCAATTCTTCTCCTT+TGG + chr8_2:10845202-10845221 None:intergenic 45.0%
AAGTTACCTTTGTGAGGGGT+TGG - chr8_2:10845264-10845283 Msa1233820:CDS 45.0%
CGTTACTGGATGGTTCCAAA+AGG - chr8_2:10845297-10845316 Msa1233820:CDS 45.0%
TTCTTACCGGTACTATCGAG+AGG - chr8_2:10845378-10845397 Msa1233820:CDS 45.0%
GCATTCTGCTTTACTCGCAA+AGG + chr8_2:10845413-10845432 None:intergenic 45.0%
AAACCAGGTGGATCAGGCAT+AGG + chr8_2:10839434-10839453 None:intergenic 50.0%
ATCCCGGGAACAAAAACCAC+TGG + chr8_2:10839491-10839510 None:intergenic 50.0%
AAGTCCACCGGTAACAATCC+CGG + chr8_2:10839507-10839526 None:intergenic 50.0%
CTCCCAAAGTTCAAGTCCAC+CGG + chr8_2:10839519-10839538 None:intergenic 50.0%
! GGTGGACTTGAACTTTGGGA+GGG - chr8_2:10839518-10839537 Msa1233820:CDS 50.0%
! GTGGACTTGAACTTTGGGAG+GGG - chr8_2:10839519-10839538 Msa1233820:CDS 50.0%
TGGAAGGATGCTAGGTTGCT+AGG - chr8_2:10840447-10840466 Msa1233820:intron 50.0%
! GGAAGGGAACTCCTCTTTTG+TGG - chr8_2:10841268-10841287 Msa1233820:intron 50.0%
TTACAGACCTTCATGCTGGG+TGG - chr8_2:10841871-10841890 Msa1233820:intron 50.0%
GAAACAGGAATGGATCCACC+TGG - chr8_2:10841914-10841933 Msa1233820:intron 50.0%
ATCCACCTGGCATTAGAGTC+CGG - chr8_2:10841927-10841946 Msa1233820:intron 50.0%
! CGCCCAAACAAAGTATCCTG+CGG + chr8_2:10841987-10842006 None:intergenic 50.0%
! CGCAGGATACTTTGTTTGGG+CGG - chr8_2:10841985-10842004 Msa1233820:intron 50.0%
GGCGGTCCTAATTGCTAACT+TGG - chr8_2:10842003-10842022 Msa1233820:intron 50.0%
! GTTGAAGCACCAGCTCCAAT+GGG - chr8_2:10842324-10842343 Msa1233820:CDS 50.0%
GGTGTTCCAAAGGCTATAGC+AGG - chr8_2:10842417-10842436 Msa1233820:CDS 50.0%
CCTTGCAACAGCAATGTCTC+GGG + chr8_2:10842460-10842479 None:intergenic 50.0%
! TGACTTGTATGGGTGTAGCC+TGG - chr8_2:10842521-10842540 Msa1233820:CDS 50.0%
ACGCCTTCAACCTGAAGTGT+CGG - chr8_2:10842685-10842704 Msa1233820:CDS 50.0%
AAAGGGAGGGGACACCATAT+GGG - chr8_2:10842976-10842995 Msa1233820:intron 50.0%
AGTCCACACATCACGACAAG+AGG + chr8_2:10843575-10843594 None:intergenic 50.0%
! CTACCACGCGCCATCATTTT+AGG + chr8_2:10843694-10843713 None:intergenic 50.0%
AGTTGAGTACTTGAGCCCTC+AGG - chr8_2:10844667-10844686 Msa1233820:intron 50.0%
TTGTCACCACCATCGGCATT+AGG + chr8_2:10844919-10844938 None:intergenic 50.0%
ATGTGTGCTAAAGGTTGGCG+CGG - chr8_2:10845012-10845031 Msa1233820:intron 50.0%
ACATAAGTGCGGATCCCTGA+AGG + chr8_2:10845054-10845073 None:intergenic 50.0%
TCCTCTACCTTCTAGCAGGT+TGG + chr8_2:10845103-10845122 None:intergenic 50.0%
GTGTTCCTCTACCTTCTAGC+AGG + chr8_2:10845107-10845126 None:intergenic 50.0%
GATGTTATGAGGGTTGCAGC+AGG - chr8_2:10845174-10845193 Msa1233820:CDS 50.0%
GCCAAAGGAGAAGAATTGGG+AGG - chr8_2:10845198-10845217 Msa1233820:CDS 50.0%
AGGAATCCAACCCCTCACAA+AGG + chr8_2:10845273-10845292 None:intergenic 50.0%
TTGGATTCCTCTCCCGTTAC+TGG - chr8_2:10845283-10845302 Msa1233820:CDS 50.0%
ATTCCTCTCCCGTTACTGGA+TGG - chr8_2:10845287-10845306 Msa1233820:CDS 50.0%
GGATGGTTCCAAAAGGAGAG+AGG - chr8_2:10845304-10845323 Msa1233820:CDS 50.0%
! TGCGTCTTCCTCTCTCCTTT+TGG + chr8_2:10845315-10845334 None:intergenic 50.0%
GTGGATCCTCTCGATAGTAC+CGG + chr8_2:10845387-10845406 None:intergenic 50.0%
ATTCCAGTGAGTGGCGAAAC+AGG - chr8_2:10845560-10845579 Msa1233820:CDS 50.0%
AGTCCACCGGTAACAATCCC+GGG + chr8_2:10839506-10839525 None:intergenic 55.0%
! CGGTGGACTTGAACTTTGGG+AGG - chr8_2:10839517-10839536 Msa1233820:CDS 55.0%
ATGTGCTCCACCCAGCATGA+AGG + chr8_2:10841881-10841900 None:intergenic 55.0%
ATTAGAGTCCGGCCTGTCTC+AGG - chr8_2:10841938-10841957 Msa1233820:intron 55.0%
CTACAAGTCCTGAGACAGGC+CGG + chr8_2:10841949-10841968 None:intergenic 55.0%
GCAGCTACAAGTCCTGAGAC+AGG + chr8_2:10841953-10841972 None:intergenic 55.0%
! GGTTGAAGCACCAGCTCCAA+TGG - chr8_2:10842323-10842342 Msa1233820:CDS 55.0%
! CCCGAGACATTGCTGTTGCA+AGG - chr8_2:10842457-10842476 Msa1233820:CDS 55.0%
!! ACTTCAGGTTGAAGGCGTGC+CGG + chr8_2:10842683-10842702 None:intergenic 55.0%
!! GCACCGACACTTCAGGTTGA+AGG + chr8_2:10842691-10842710 None:intergenic 55.0%
!! CTATGCAGCACCGACACTTC+AGG + chr8_2:10842698-10842717 None:intergenic 55.0%
TCACAAGGGCGATTGCACCA+GGG - chr8_2:10842864-10842883 Msa1233820:intron 55.0%
CATATGGTGTCCCCTCCCTT+TGG + chr8_2:10842977-10842996 None:intergenic 55.0%
CAAAGGGAGGGGACACCATA+TGG - chr8_2:10842975-10842994 Msa1233820:intron 55.0%
AAGGGAGGGGACACCATATG+GGG - chr8_2:10842977-10842996 Msa1233820:intron 55.0%
TGGTCACCAGAGGAAAGCTG+TGG - chr8_2:10843010-10843029 Msa1233820:intron 55.0%
TGAAGGCCACAGCTTTCCTC+TGG + chr8_2:10843019-10843038 None:intergenic 55.0%
GTTTGGCAAAGCTGTCGCAG+AGG - chr8_2:10843123-10843142 Msa1233820:intron 55.0%
AAGACAATGCAGGGCCCTGT+TGG + chr8_2:10843446-10843465 None:intergenic 55.0%
CTCCCTCGACTCCCATATCA+TGG + chr8_2:10843603-10843622 None:intergenic 55.0%
! GCTCCTAAAATGATGGCGCG+TGG - chr8_2:10843688-10843707 Msa1233820:intron 55.0%
! CTACCTTCTAGCAGGTTGGC+TGG + chr8_2:10845099-10845118 None:intergenic 55.0%
GCCAACCTGCTAGAAGGTAG+AGG - chr8_2:10845099-10845118 Msa1233820:intron 55.0%
! GAACCATCCAGTAACGGGAG+AGG + chr8_2:10845293-10845312 None:intergenic 55.0%
GCTTTACTCGCAAAGGGGTG+TGG + chr8_2:10845406-10845425 None:intergenic 55.0%
CTTCCTGTTTCGCCACTCAC+TGG + chr8_2:10845566-10845585 None:intergenic 55.0%
GAGTGGCGAAACAGGAAGCA+AGG - chr8_2:10845568-10845587 Msa1233820:CDS 55.0%
GGTCCTATGCCTGATCCACC+TGG - chr8_2:10839428-10839447 Msa1233820:three_prime_UTR 60.0%
GTTCCCGGGATTGTTACCGG+TGG - chr8_2:10839500-10839519 Msa1233820:CDS 60.0%
!! GAGGGGCATCAGTGTGCTGA+AGG - chr8_2:10839536-10839555 Msa1233820:CDS 60.0%
ACAGGCCGGACTCTAATGCC+AGG + chr8_2:10841935-10841954 None:intergenic 60.0%
! GCTGCTGACTACTTTGCCGC+AGG - chr8_2:10841968-10841987 Msa1233820:intron 60.0%
! GAAGCACCAGCTCCAATGGG+TGG - chr8_2:10842327-10842346 Msa1233820:CDS 60.0%
! GTGGTGGAGGAGGACCAGAT+TGG - chr8_2:10842346-10842365 Msa1233820:CDS 60.0%
GTCACAAGGGCGATTGCACC+AGG - chr8_2:10842863-10842882 Msa1233820:intron 60.0%
CCAATCAAGGCCGCCCCATA+TGG + chr8_2:10842993-10843012 None:intergenic 60.0%
CCATATGGGGCGGCCTTGAT+TGG - chr8_2:10842990-10843009 Msa1233820:intron 60.0%
! CGGCCTTGATTGGTCACCAG+AGG - chr8_2:10843000-10843019 Msa1233820:intron 60.0%
! CCTTCTAGCAGGTTGGCTGG+AGG + chr8_2:10845096-10845115 None:intergenic 60.0%
CCTCCAGCCAACCTGCTAGA+AGG - chr8_2:10845093-10845112 Msa1233820:intron 60.0%
AGGGTTGCAGCAGGAGCCAA+AGG - chr8_2:10845183-10845202 Msa1233820:CDS 60.0%
GGCCGGACTCTAATGCCAGG+TGG + chr8_2:10841932-10841951 None:intergenic 65.0%
GCACCAGCTCCAATGGGTGG+TGG - chr8_2:10842330-10842349 Msa1233820:CDS 65.0%
CCTCCACCACCCATTGGAGC+TGG + chr8_2:10842336-10842355 None:intergenic 65.0%
! CCAGCTCCAATGGGTGGTGG+AGG - chr8_2:10842333-10842352 Msa1233820:CDS 65.0%
!! GCTCCAATGGGTGGTGGAGG+AGG - chr8_2:10842336-10842355 Msa1233820:CDS 65.0%
GGTCCTCCTCCACCACCCAT+TGG + chr8_2:10842342-10842361 None:intergenic 65.0%
GGAGGGGACACCATATGGGG+CGG - chr8_2:10842980-10842999 Msa1233820:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 10838964 10845792 10838964 ID=Msa1233820;Name=Msa1233820
chr8_2 mRNA 10838964 10845792 10838964 ID=Msa1233820-mRNA-1;Parent=Msa1233820;Name=Msa1233820-mRNA-1;_AED=0.04;_eAED=0.04;_QI=164|0.8|0.83|1|1|1|6|514|665
chr8_2 exon 10838964 10839961 10838964 ID=Msa1233820-mRNA-1:exon:4213;Parent=Msa1233820-mRNA-1
chr8_2 exon 10840956 10841215 10840956 ID=Msa1233820-mRNA-1:exon:4212;Parent=Msa1233820-mRNA-1
chr8_2 exon 10841621 10841885 10841621 ID=Msa1233820-mRNA-1:exon:4211;Parent=Msa1233820-mRNA-1
chr8_2 exon 10842278 10842561 10842278 ID=Msa1233820-mRNA-1:exon:4210;Parent=Msa1233820-mRNA-1
chr8_2 exon 10842657 10842879 10842657 ID=Msa1233820-mRNA-1:exon:4209;Parent=Msa1233820-mRNA-1
chr8_2 exon 10845147 10845792 10845147 ID=Msa1233820-mRNA-1:exon:4208;Parent=Msa1233820-mRNA-1
chr8_2 five_prime_UTR 10845629 10845792 10845629 ID=Msa1233820-mRNA-1:five_prime_utr;Parent=Msa1233820-mRNA-1
chr8_2 CDS 10845147 10845628 10845147 ID=Msa1233820-mRNA-1:cds;Parent=Msa1233820-mRNA-1
chr8_2 CDS 10842657 10842879 10842657 ID=Msa1233820-mRNA-1:cds;Parent=Msa1233820-mRNA-1
chr8_2 CDS 10842278 10842561 10842278 ID=Msa1233820-mRNA-1:cds;Parent=Msa1233820-mRNA-1
chr8_2 CDS 10841621 10841885 10841621 ID=Msa1233820-mRNA-1:cds;Parent=Msa1233820-mRNA-1
chr8_2 CDS 10840956 10841215 10840956 ID=Msa1233820-mRNA-1:cds;Parent=Msa1233820-mRNA-1
chr8_2 CDS 10839478 10839961 10839478 ID=Msa1233820-mRNA-1:cds;Parent=Msa1233820-mRNA-1
chr8_2 three_prime_UTR 10838964 10839477 10838964 ID=Msa1233820-mRNA-1:three_prime_utr;Parent=Msa1233820-mRNA-1
Gene Sequence

>Msa1233820

ATGGCTTTGATCCGAAGAAGAAAAGGGTCAGAACCAGAAAAGGGTAATAGCGAAAATTCAGAACCAAAAATTCAGAAAAAAGAAGAAGAAGAAGAAGATGATGATAATGATAAGAACAAAAAGAACAAGAAGAAAAACAAGGACGAGGTTGCTGTTTTTAAGAAGAAGAGTACTAGGTGGTCTTGTGTTGACAGTTGTTGTTGGTTTGTTGGTTGCATTTGTACTTTATGGTGGTTTTTGTTGTTTATGTACAATGTAATGCCAGCTTCATTTCCTCAGTATGTCACTGAGGCTATTACTGGTCCTATGCCTGATCCACCTGGTTTGAAATTGAAGAAAGAAGGGTTAAGTGTGAAGCATCCAGTGGTTTTTGTTCCCGGGATTGTTACCGGTGGACTTGAACTTTGGGAGGGGCATCAGTGTGCTGAAGGATTGTTTAGGAAGAGATTGTGGGGTGGTACTTTTGGAGAAGTTTATAAAAGACCTTCATGCTGGGTGGAGCACATGTCCCTCGACAATGAAACAGGAATGGATCCACCTGGCATTAGAGTCCGGCCTGTCTCAGGACTTGTAGCTGCTGACTACTTTGCCGCAGGATACTTTGTTTGGGCGGTCCTAATTGCTAACTTGGCACGCATCGGTTATGAAGAAAAAACTATGTACATGGCTGCATATGATTGGAGAATATCATTTCAGAACACTGAGGTGCGGGATCAAACACTAAGTCGGATAAAAAGCAACATAGAACTCATGGTTTCCACTAATGGTGGAAATAAGGCGGTTATTATTCCACATTCGATGGGGGTTTTATATTTTCTTCATTTCATGAAATGGGTTGAAGCACCAGCTCCAATGGGTGGTGGAGGAGGACCAGATTGGTGTTCCAAATATATTAAGGCAATTGTAAACATCGGTGGACCATTTTTAGGTGTTCCAAAGGCTATAGCAGGGCTTTTCTCAGCTGAAGCCCGAGACATTGCTGTTGCAAGGGCGATTGCACCAGGGTTTTTAGATAACGATATGTTCCGCATTCAAACATTGCAACATGTTATGAAGATGACTCGCACTTGGGACTCAACAATGTCAATGATACCAAAGGGAGGGGACACCATATGGGGCGGCCTTGATTGGTCACCAGAGGAAAGCTGTGGCCTTCACACGAGAAAGCAAAGCAGCAACAATACTCAGTTGACAGAACAAAAGACAAATAAAACAAATGTTAACTATGGAAGAATGATATCGTTTGGCAAAGCTGGTGCAATTAAAGGTCCCAATGTTGCAAATACCTCTTGTCGTGATGTGTGGACTGAATACCATGATATGGGAGTCGAGGGAGTAAGAGCAGTTGCAGAACATAAAGTTTACACAGCTGGCTCAATCATAGACCTGCTTCAGTTTGTTGCTCCTAAAATGATGGCGCGTGGTAGTGATCATTTCTCTTATGGAGTAGCTGACAATTTAGATGATCCTAAATATGAACACTACAAATATTGGTCAAACCCATTGGAGACAAAGTTACCAAATGCCCCTGATATGGAAATCTTCTCTCTATATGGAGTTGGCCTACCAACCGAAAGAGCTTATATTTATAAGTTAACTCCCTTTGCCGAGTGTTACATTCCTTTTGAAATTGATCCTAATGCCGATGGTGGTGACAAAGTTAGTTGTCTGAAAGATGGTGTCTACACTGTTGATGGTGATGAGACCGTTCCAGTTCTAAGTTCAGGCTACATGTGTGCTAAAGGTTGGCGCGGAAAAACAAGATTCAATCCTTCAGGGATCCGCACTTATGTTCGAGAATATGATCATTCTCCTCCAGCCAACCTGCTAGAAGGTAGAGGAACACAAAGCGGTGCTCATGTTGATATAATGGGAAACTTTGCATTGATTGAAGATGTTATGAGGGTTGCAGCAGGAGCCAAAGGAGAAGAATTGGGAGGTGATAAGGTGTATTCTGATATCTTTAAATGGTCCGATAGAATCAAGTTACCTTTGTGA
Protein sequence

>Msa1233820

MALIRRRKGSEPEKGNSENSEPKIQKKEEEEEDDDNDKNKKNKKKNKDEVAVFKKKSTRWSCVDSCCWFVGCICTLWWFLLFMYNVMPASFPQYVTEAITGPMPDPPGLKLKKEGLSVKHPVVFVPGIVTGGLELWEGHQCAEGLFRKRLWGGTFGEVYKRPSCWVEHMSLDNETGMDPPGIRVRPVSGLVAADYFAAGYFVWAVLIANLARIGYEEKTMYMAAYDWRISFQNTEVRDQTLSRIKSNIELMVSTNGGNKAVIIPHSMGVLYFLHFMKWVEAPAPMGGGGGPDWCSKYIKAIVNIGGPFLGVPKAIAGLFSAEARDIAVARAIAPGFLDNDMFRIQTLQHVMKMTRTWDSTMSMIPKGGDTIWGGLDWSPEESCGLHTRKQSSNNTQLTEQKTNKTNVNYGRMISFGKAGAIKGPNVANTSCRDVWTEYHDMGVEGVRAVAEHKVYTAGSIIDLLQFVAPKMMARGSDHFSYGVADNLDDPKYEHYKYWSNPLETKLPNAPDMEIFSLYGVGLPTERAYIYKLTPFAECYIPFEIDPNADGGDKVSCLKDGVYTVDGDETVPVLSSGYMCAKGWRGKTRFNPSGIRTYVREYDHSPPANLLEGRGTQSGAHVDIMGNFALIEDVMRVAAGAKGEELGGDKVYSDIFKWSDRIKLPL*