AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0309060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309060 MtrunA17_Chr2g0277211 89.868 227 16 2 1 224 1 223 8.61e-143 397
Msa0309060 MtrunA17_Chr2g0298061 74.510 153 39 0 72 224 89 241 1.57e-77 233
Msa0309060 MtrunA17_Chr7g0270231 43.312 157 83 3 68 223 63 214 8.32e-31 112
Msa0309060 MtrunA17_Chr8g0352991 58.904 73 30 0 68 140 63 135 2.06e-23 92.0
Msa0309060 MtrunA17_Chr1g0182901 46.667 60 30 1 86 143 200 259 2.56e-11 61.6
Msa0309060 MtrunA17_Chr3g0115091 46.667 60 30 1 86 143 198 257 2.65e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0309060 AT5G49940.1 80.000 175 35 0 50 224 61 235 1.42e-98 286
Msa0309060 AT4G25910.1 61.364 220 70 4 6 224 30 235 9.45e-81 241
Msa0309060 AT5G49940.2 78.947 114 24 0 50 163 61 174 7.52e-60 186
Msa0309060 AT4G01940.1 36.813 182 107 4 38 213 44 223 5.76e-29 108

Find 108 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGAGGTTGTTTGTATATT+TGG 0.134296 2_4:-3484868 Msa0309060:three_prime_UTR
GGTTCGACTGCGACTATTTC+AGG 0.155822 2_4:+3487608 None:intergenic
GTTCAGCTGCTATGATATTT+TGG 0.179960 2_4:-3485447 Msa0309060:exon
TTCTGTTATGACAATGAAAA+TGG 0.180204 2_4:-3487660 Msa0309060:CDS
GGCAATTCCACAGCTGAATT+TGG 0.194360 2_4:+3487824 None:intergenic
TTCCATTAGTGGCAACATTA+TGG 0.254489 2_4:+3485085 None:intergenic
GGGCATTGAGCGTCGATTAA+TGG 0.258243 2_4:-3487639 Msa0309060:CDS
ATTGCTAGTACGGGGTTTAA+AGG 0.285870 2_4:-3484890 Msa0309060:three_prime_UTR
TTCAGGTTCTAGAGGAATTA+AGG 0.293515 2_4:-3485626 Msa0309060:intron
CTCCATAATGTTGCCACTAA+TGG 0.297668 2_4:-3485087 Msa0309060:three_prime_UTR
GTGCGATTGGCGATGGTGTT+TGG 0.299431 2_4:-3489665 Msa0309060:five_prime_UTR
TGTTGTACGGTTGAAGTTAC+AGG 0.305471 2_4:-3487705 Msa0309060:CDS
GACTTTGACTGTAATAATAA+TGG 0.311031 2_4:+3485292 None:intergenic
CGTTAAGTTCTTTCCATTAG+TGG 0.315941 2_4:+3485074 None:intergenic
AATTGTATCGGAATGAGATT+TGG 0.323240 2_4:-3484953 Msa0309060:three_prime_UTR
TGCGATTGGCGATGGTGTTT+GGG 0.323776 2_4:-3489664 Msa0309060:five_prime_UTR
TTATGTTTGTACAGCTATAA+AGG 0.329155 2_4:-3487858 Msa0309060:intron
TAGCTCCATTATGTTGTAAT+CGG 0.332611 2_4:-3485243 Msa0309060:three_prime_UTR
TTCTTCCATCACCCTCAAAA+AGG 0.340435 2_4:-3489419 Msa0309060:intron
TAAGCAATTTAAAATGTTGT+AGG 0.369306 2_4:-3484777 Msa0309060:three_prime_UTR
GTGATTCGGACCTTTACTAT+TGG 0.387716 2_4:+3485549 None:intergenic
CCGGTTTCTTCATCAGTTAC+CGG 0.393466 2_4:+3487587 None:intergenic
AAATCCCGATTACAACATAA+TGG 0.395109 2_4:+3485238 None:intergenic
CCGTACCTGGTAGGGGCAGC+TGG 0.401375 2_4:-3485603 Msa0309060:CDS
GTGGGTGGGTGGTGTGCGAT+TGG 0.411846 2_4:-3489678 Msa0309060:five_prime_UTR
TCCTTTCATACACGTCCGTT+TGG 0.412463 2_4:-3489247 Msa0309060:intron
TGAAATAGTCGCAGTCGAAC+CGG 0.432530 2_4:-3487606 Msa0309060:CDS
AAAGAAAAGAAAGGAAGAAA+CGG 0.439770 2_4:-3489708 None:intergenic
GGGTGGTGTGCGATTGGCGA+TGG 0.442125 2_4:-3489672 Msa0309060:five_prime_UTR
TCTTGAATTGGTAGCAATTG+AGG 0.443279 2_4:-3485574 Msa0309060:CDS
TCTTTGTTGTTGCAGGGCAC+TGG 0.448241 2_4:-3489328 Msa0309060:intron
TCGTGATATTATTGCTAGTA+CGG 0.450284 2_4:-3484900 Msa0309060:three_prime_UTR
AGCTGAACTGCTGCTATGGC+AGG 0.451914 2_4:+3485462 None:intergenic
AGCTGGTGGAACTCTTGAAT+TGG 0.456731 2_4:-3485586 Msa0309060:CDS
AAACTGTGTTGGATGAAATT+CGG 0.457743 2_4:-3487781 Msa0309060:CDS
CGTGATATTATTGCTAGTAC+GGG 0.458389 2_4:-3484899 Msa0309060:three_prime_UTR
AGCTCCATTATGTTGTAATC+GGG 0.460436 2_4:-3485242 Msa0309060:three_prime_UTR
CTTATGTTGCACTTGAGCTT+AGG 0.464636 2_4:-3484843 Msa0309060:three_prime_UTR
CGGCAGCTGGACCTGTGATT+CGG 0.465355 2_4:+3485535 None:intergenic
AAGCAATTTAAAATGTTGTA+GGG 0.473646 2_4:-3484776 Msa0309060:three_prime_UTR
GAAAGGAAGAAACGGAACTT+TGG 0.478743 2_4:-3489700 Msa0309060:five_prime_UTR
ATAGTAAAGGTCCGAATCAC+AGG 0.485942 2_4:-3485546 Msa0309060:CDS
GACATTATACTATTATAGTC+AGG 0.489661 2_4:+3485194 None:intergenic
TGGAGTGTCAAAACTATTTG+TGG 0.490292 2_4:-3484927 Msa0309060:three_prime_UTR
TAGCAGCTGAACTGCTGCTA+TGG 0.490395 2_4:+3485458 None:intergenic
GCACCACCACACCTTGCATC+GGG 0.494394 2_4:+3489488 None:intergenic
TTCATCATTTAGCTCGAGAC+CGG 0.495683 2_4:+3487568 None:intergenic
TCTGTTATGACAATGAAAAT+GGG 0.498234 2_4:-3487659 Msa0309060:CDS
AAAGGCCGAAAAGAAAAGAA+AGG 0.502595 2_4:-3489717 None:intergenic
ATCGGAATGAGATTTGGAAA+TGG 0.503286 2_4:-3484947 Msa0309060:three_prime_UTR
AGAAGAAGAAGAAGGTTGAA+GGG 0.503550 2_4:+3489438 None:intergenic
TTCCACCAGCTGCCCCTACC+AGG 0.506704 2_4:+3485598 None:intergenic
ACAGTCATGACACCGGCAGC+TGG 0.515392 2_4:+3485522 None:intergenic
TTGAAGTTACAGGGTGCCTG+TGG 0.517377 2_4:-3487695 Msa0309060:CDS
AATTAAGGCCGTACCTGGTA+GGG 0.517939 2_4:-3485611 Msa0309060:CDS
AGCTGAATTTGGAGTGGCAA+CGG 0.519177 2_4:+3487835 None:intergenic
CGAATCACAGGTCCAGCTGC+CGG 0.519813 2_4:-3485534 Msa0309060:CDS
GAAACGGAACTTTGGTGGGT+GGG 0.523620 2_4:-3489692 Msa0309060:five_prime_UTR
AGCACCACCACACCTTGCAT+CGG 0.529473 2_4:+3489487 None:intergenic
GTTCGACTGCGACTATTTCA+GGG 0.533343 2_4:+3487609 None:intergenic
TTCATTGTCATAACAGAACT+CGG 0.533887 2_4:+3487665 None:intergenic
GAATTAAGGCCGTACCTGGT+AGG 0.540850 2_4:-3485612 Msa0309060:CDS
CCAGCTGCCCCTACCAGGTA+CGG 0.552725 2_4:+3485603 None:intergenic
CCGGTAACTGATGAAGAAAC+CGG 0.553976 2_4:-3487587 Msa0309060:CDS
TGTTGTCCTAAAAGAAACAT+TGG 0.558584 2_4:+3489303 None:intergenic
ATGTCATACTTCATTCCCAT+TGG 0.560839 2_4:+3485369 None:intergenic
AGGAAGAAACGGAACTTTGG+TGG 0.562446 2_4:-3489697 Msa0309060:five_prime_UTR
AATTGAGGAGCCAATAGTAA+AGG 0.562850 2_4:-3485559 Msa0309060:CDS
AGAGGAATTAAGGCCGTACC+TGG 0.564029 2_4:-3485616 Msa0309060:CDS
TTGACTGTAATAATAATGGA+AGG 0.568999 2_4:+3485296 None:intergenic
ACCAAACGGACGTGTATGAA+AGG 0.569126 2_4:+3489246 None:intergenic
TGTTTGGGTGGTGACGTGAC+TGG 0.575500 2_4:-3489649 Msa0309060:intron
GAAAATCAGCACCCGATGCA+AGG 0.579496 2_4:-3489499 Msa0309060:exon
CGGACGTGTATGAAAGGAAA+GGG 0.582467 2_4:+3489252 None:intergenic
TACCTGGTAGGGGCAGCTGG+TGG 0.585925 2_4:-3485600 Msa0309060:CDS
AAAGGGAAGGACGCGGCAGA+AGG 0.586202 2_4:+3489269 None:intergenic
GTGACTGTTTCAGGTTCTAG+AGG 0.588325 2_4:-3485634 Msa0309060:intron
ATTAAGGCCGTACCTGGTAG+GGG 0.594661 2_4:-3485610 Msa0309060:CDS
CCACCGTCTGATATGAGATA+CGG 0.596291 2_4:+3487758 None:intergenic
ACGGAACTTTGGTGGGTGGG+TGG 0.603618 2_4:-3489689 Msa0309060:five_prime_UTR
TGAAAATGTAGAAACTGTGT+TGG 0.605986 2_4:-3487792 Msa0309060:CDS
GGAAGAAACGGAACTTTGGT+GGG 0.606856 2_4:-3489696 Msa0309060:five_prime_UTR
AAATGATGAAAATATAGAGA+AGG 0.609423 2_4:-3487555 Msa0309060:intron
TGAAGTTACAGGGTGCCTGT+GGG 0.613999 2_4:-3487694 Msa0309060:CDS
TTCCACAGCTGAATTTGGAG+TGG 0.615913 2_4:+3487829 None:intergenic
AGAACTCGGACACGACCCAC+AGG 0.616393 2_4:+3487679 None:intergenic
AAATCGATGGCAATGTTGTA+CGG 0.617193 2_4:-3487718 Msa0309060:CDS
GTGATGGAAGAAGAAGAAGA+AGG 0.618429 2_4:+3489430 None:intergenic
AGTACGGGGTTTAAAGGACG+AGG 0.621139 2_4:-3484884 Msa0309060:three_prime_UTR
GCACCCGATGCAAGGTGTGG+TGG 0.624441 2_4:-3489491 Msa0309060:exon
ACGGACGTGTATGAAAGGAA+AGG 0.624764 2_4:+3489251 None:intergenic
GTCGCTCTACATGAAATCGA+TGG 0.627147 2_4:-3487731 Msa0309060:CDS
TGCCACTCCAAATTCAGCTG+TGG 0.629430 2_4:-3487831 Msa0309060:CDS
GTTGTACGGTTGAAGTTACA+GGG 0.634834 2_4:-3487704 Msa0309060:CDS
ATGCTATGTCTGAATTGTAT+CGG 0.636868 2_4:-3484965 Msa0309060:intron
TCAACCACTAATAGAATTTG+GGG 0.638422 2_4:+3484752 None:intergenic
AGAAACGGAACTTTGGTGGG+TGG 0.642107 2_4:-3489693 Msa0309060:five_prime_UTR
CGGCCGTATCTCATATCAGA+CGG 0.648569 2_4:-3487761 Msa0309060:CDS
GCACTTGAGCTTAGGCAGAG+AGG 0.650533 2_4:-3484835 Msa0309060:three_prime_UTR
AACACGCACAGTCATGACAC+CGG 0.653006 2_4:+3485515 None:intergenic
AAGAACTTAACGCTATCAAG+TGG 0.653517 2_4:-3485063 Msa0309060:three_prime_UTR
GATTGGCGATGGTGTTTGGG+TGG 0.654488 2_4:-3489661 Msa0309060:five_prime_UTR
AAAATCATCAATTATCTGTG+AGG 0.656996 2_4:-3484812 Msa0309060:three_prime_UTR
TCAGCACCCGATGCAAGGTG+TGG 0.661795 2_4:-3489494 Msa0309060:exon
TGAAAGGAAAGGGAAGGACG+CGG 0.666949 2_4:+3489262 None:intergenic
CGTGTATGAAAGGAAAGGGA+AGG 0.668106 2_4:+3489256 None:intergenic
GTGATATTATTGCTAGTACG+GGG 0.670503 2_4:-3484898 Msa0309060:three_prime_UTR
CCGTATCTCATATCAGACGG+TGG 0.699947 2_4:-3487758 Msa0309060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATAATAATTAAAACG+AGG + chr2_4:3485115-3485134 None:intergenic 10.0%
!!! AGTTTTTAAAAATTGTTTTT+GGG + chr2_4:3487994-3488013 None:intergenic 10.0%
!!! TAGTTTTTAAAAATTGTTTT+TGG + chr2_4:3487995-3488014 None:intergenic 10.0%
!!! AAAACTAATATTTTTTATGA+AGG - chr2_4:3488008-3488027 Msa0309060:intron 10.0%
!!! AAACTAATATTTTTTATGAA+GGG - chr2_4:3488009-3488028 Msa0309060:intron 10.0%
!!! CATAATTTTTATAAATCATA+GGG + chr2_4:3488052-3488071 None:intergenic 10.0%
!!! ACATAATTTTTATAAATCAT+AGG + chr2_4:3488053-3488072 None:intergenic 10.0%
!!! TGTGTTAATTTTTTTTTAAA+GGG + chr2_4:3488137-3488156 None:intergenic 10.0%
!! TGATTGATTAATTGATTATT+AGG - chr2_4:3484882-3484901 Msa0309060:three_prime_UTR 15.0%
!!! ATTTGATTTTGATTTTGATT+TGG - chr2_4:3484942-3484961 Msa0309060:three_prime_UTR 15.0%
!! TTTAATTGAAGAAAAATAGT+TGG + chr2_4:3485445-3485464 None:intergenic 15.0%
!! TATATTAGAAAACTTATGAA+AGG + chr2_4:3485603-3485622 None:intergenic 15.0%
!! CTTATGAAAATATGTTAAAA+GGG + chr2_4:3485760-3485779 None:intergenic 15.0%
!! ACTTATGAAAATATGTTAAA+AGG + chr2_4:3485761-3485780 None:intergenic 15.0%
!! CTTTACAACTTAAATAATAT+AGG - chr2_4:3487531-3487550 Msa0309060:intron 15.0%
!!! GTGTGTTAATTTTTTTTTAA+AGG + chr2_4:3488138-3488157 None:intergenic 15.0%
!! TAACTAAATAACTAACCAAA+CGG + chr2_4:3485240-3485259 None:intergenic 20.0%
!! AGAAATATTGAAGTTGAATT+TGG + chr2_4:3486514-3486533 None:intergenic 20.0%
!! TTAATATAACAACTCAGTTT+CGG - chr2_4:3486551-3486570 Msa0309060:intron 20.0%
!! AAATGATGAAAATATAGAGA+AGG - chr2_4:3486914-3486933 Msa0309060:intron 20.0%
!! ACATAATGAACATTCAAATA+TGG + chr2_4:3486995-3487014 None:intergenic 20.0%
!!! GAAAATTTATAGCGTATTTT+AGG - chr2_4:3487028-3487047 Msa0309060:intron 20.0%
!! ATGAAAAAAATATAGCATCT+AGG - chr2_4:3487185-3487204 Msa0309060:intron 20.0%
!! TGAAAAAAATATAGCATCTA+GGG - chr2_4:3487186-3487205 Msa0309060:intron 20.0%
!! TGTGGTGTATAATATAATAA+AGG - chr2_4:3487348-3487367 Msa0309060:intron 20.0%
!! ATTTAAAGAGATATGTAACT+CGG - chr2_4:3487399-3487418 Msa0309060:intron 20.0%
!!! TTAGATATATGTTTTCGAAT+TGG - chr2_4:3487468-3487487 Msa0309060:intron 20.0%
!! CAGAAATTTAATCCTATTAT+TGG + chr2_4:3487747-3487766 None:intergenic 20.0%
!!! ACTTCTTTTCATAATAGAAA+GGG - chr2_4:3487774-3487793 Msa0309060:CDS 20.0%
!!! TAATATTTTTTATGAAGGGT+TGG - chr2_4:3488013-3488032 Msa0309060:intron 20.0%
!!! ATTTTTATAAATCATAGGGT+TGG + chr2_4:3488048-3488067 None:intergenic 20.0%
!!! TAGCTATATTTTCTTTTTTG+AGG - chr2_4:3489336-3489355 Msa0309060:intron 20.0%
!!! AGCTATATTTTCTTTTTTGA+GGG - chr2_4:3489337-3489356 Msa0309060:intron 20.0%
!!! TAAGCAATTTAAAATGTTGT+AGG - chr2_4:3489692-3489711 Msa0309060:five_prime_UTR 20.0%
!!! AAGCAATTTAAAATGTTGTA+GGG - chr2_4:3489693-3489712 Msa0309060:five_prime_UTR 20.0%
! ATTAATCAATCAATCACGAA+AGG + chr2_4:3484874-3484893 None:intergenic 25.0%
! AAATAGTTGGAATTTGAAGA+GGG + chr2_4:3485432-3485451 None:intergenic 25.0%
! AAAATAGTTGGAATTTGAAG+AGG + chr2_4:3485433-3485452 None:intergenic 25.0%
! TTCCTCTAACAAAAGATAAA+GGG + chr2_4:3486090-3486109 None:intergenic 25.0%
! TTTCCTCTAACAAAAGATAA+AGG + chr2_4:3486091-3486110 None:intergenic 25.0%
! ATAAGCTATAGTAGAAAAGT+TGG - chr2_4:3486130-3486149 Msa0309060:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG - chr2_4:3486141-3486160 Msa0309060:intron 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG + chr2_4:3486266-3486285 None:intergenic 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr2_4:3486283-3486302 Msa0309060:intron 25.0%
! GTTCTATCAAAAACCATATT+TGG + chr2_4:3486323-3486342 None:intergenic 25.0%
!! TGGTTTTTGATAGAACATTA+TGG - chr2_4:3486327-3486346 Msa0309060:intron 25.0%
!! TTTTTGATAGAACATTATGG+CGG - chr2_4:3486330-3486349 Msa0309060:intron 25.0%
! AATAATGAAGATCACATGTT+AGG + chr2_4:3486593-3486612 None:intergenic 25.0%
! TTATGTTTGTACAGCTATAA+AGG - chr2_4:3486611-3486630 Msa0309060:intron 25.0%
! TTCTGTTATGACAATGAAAA+TGG - chr2_4:3486809-3486828 Msa0309060:intron 25.0%
! TCTGTTATGACAATGAAAAT+GGG - chr2_4:3486810-3486829 Msa0309060:intron 25.0%
! AAATTGAAGCATATAGTACT+TGG - chr2_4:3487127-3487146 Msa0309060:intron 25.0%
! AATTGAAGCATATAGTACTT+GGG - chr2_4:3487128-3487147 Msa0309060:intron 25.0%
! AAATTGAAGCATATAGTACT+TGG - chr2_4:3487127-3487146 Msa0309060:intron 25.0%
! AATTGAAGCATATAGTACTT+GGG - chr2_4:3487128-3487147 Msa0309060:intron 25.0%
!!! TTTACTTTTGAAAACACTTG+TGG - chr2_4:3487330-3487349 Msa0309060:intron 25.0%
! AAACGATATACAGGTAAATT+TGG + chr2_4:3487567-3487586 None:intergenic 25.0%
! ATCAGATTTAGAAACCAAAA+TGG - chr2_4:3487640-3487659 Msa0309060:CDS 25.0%
! TATTATGAAAAGAAGTCAAG+AGG + chr2_4:3487770-3487789 None:intergenic 25.0%
!! GACTTCTTTTCATAATAGAA+AGG - chr2_4:3487773-3487792 Msa0309060:CDS 25.0%
!! CTTCTTTTCATAATAGAAAG+GGG - chr2_4:3487775-3487794 Msa0309060:CDS 25.0%
!!! TCTTTTTTCATTTTCTCTTG+GGG + chr2_4:3487863-3487882 None:intergenic 25.0%
!!! CTCTTTTTTCATTTTCTCTT+GGG + chr2_4:3487864-3487883 None:intergenic 25.0%
!!! TCTCTTTTTTCATTTTCTCT+TGG + chr2_4:3487865-3487884 None:intergenic 25.0%
!!! ATTTTTCAGAACAGAAAAAC+AGG + chr2_4:3487910-3487929 None:intergenic 25.0%
! TTGTGAAATTCAAACCATTT+GGG - chr2_4:3488311-3488330 Msa0309060:intron 25.0%
!! TTTCTTTTAATGAAACGCAT+GGG + chr2_4:3488571-3488590 None:intergenic 25.0%
!! TAATTTTTCATGAACACCAA+TGG - chr2_4:3489084-3489103 Msa0309060:intron 25.0%
!! AATTTTTCATGAACACCAAT+GGG - chr2_4:3489085-3489104 Msa0309060:intron 25.0%
!! TTGACTGTAATAATAATGGA+AGG + chr2_4:3489176-3489195 None:intergenic 25.0%
! GACTTTGACTGTAATAATAA+TGG + chr2_4:3489180-3489199 None:intergenic 25.0%
! GACATTATACTATTATAGTC+AGG + chr2_4:3489278-3489297 None:intergenic 25.0%
! AAAATCATCAATTATCTGTG+AGG - chr2_4:3489657-3489676 Msa0309060:five_prime_UTR 25.0%
! AATGAAACCTACCTTTTTGA+GGG + chr2_4:3485064-3485083 None:intergenic 30.0%
! AAATGAAACCTACCTTTTTG+AGG + chr2_4:3485065-3485084 None:intergenic 30.0%
!! TATACTTTCTTTGTTGTTGC+AGG - chr2_4:3485134-3485153 Msa0309060:three_prime_UTR 30.0%
!! ATACTTTCTTTGTTGTTGCA+GGG - chr2_4:3485135-3485154 Msa0309060:three_prime_UTR 30.0%
TGTTGTCCTAAAAGAAACAT+TGG + chr2_4:3485169-3485188 None:intergenic 30.0%
TATTTAGTTACCTACTTCCA+AGG - chr2_4:3485250-3485269 Msa0309060:three_prime_UTR 30.0%
ACAGACAGTTATGATGAATA+TGG + chr2_4:3485276-3485295 None:intergenic 30.0%
ATCATAACTGTCTGTATGTT+TGG - chr2_4:3485281-3485300 Msa0309060:three_prime_UTR 30.0%
GTCACTTATACATAAATGCA+TGG + chr2_4:3485358-3485377 None:intergenic 30.0%
TGACTAACAAACTAACCAAA+TGG + chr2_4:3485396-3485415 None:intergenic 30.0%
AATAGTTGGAATTTGAAGAG+GGG + chr2_4:3485431-3485450 None:intergenic 30.0%
AAACTTATGCTGTCTCAAAT+GGG + chr2_4:3485514-3485533 None:intergenic 30.0%
AAAACTTATGCTGTCTCAAA+TGG + chr2_4:3485515-3485534 None:intergenic 30.0%
!! ATAAGTTTTGTGAGACTGTT+TGG - chr2_4:3485526-3485545 Msa0309060:CDS 30.0%
!! TAAGTTTTGTGAGACTGTTT+GGG - chr2_4:3485527-3485546 Msa0309060:CDS 30.0%
AATAAGCTGTTTATCCAAAC+AGG - chr2_4:3485734-3485753 Msa0309060:intron 30.0%
AGTTATTTGAGTATATCCGT+TGG + chr2_4:3486054-3486073 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr2_4:3486288-3486307 None:intergenic 30.0%
TACATGAATGTGAATAAGCA+TGG - chr2_4:3486472-3486491 Msa0309060:intron 30.0%
! TCTACATTTTCAGCAGTTAA+TGG + chr2_4:3486669-3486688 None:intergenic 30.0%
TGAAAATGTAGAAACTGTGT+TGG - chr2_4:3486677-3486696 Msa0309060:intron 30.0%
AAACTGTGTTGGATGAAATT+CGG - chr2_4:3486688-3486707 Msa0309060:intron 30.0%
TTCATTGTCATAACAGAACT+CGG + chr2_4:3486807-3486826 None:intergenic 30.0%
!! CGTTTACATAAGCTTTAAGA+GGG - chr2_4:3487079-3487098 Msa0309060:intron 30.0%
!! AGGCCTGATAAATTTGTTTT+CGG - chr2_4:3487368-3487387 Msa0309060:intron 30.0%
GATCCGAAAACAAATTTATC+AGG + chr2_4:3487374-3487393 None:intergenic 30.0%
TCAACTGTTATGCCAATAAT+AGG - chr2_4:3487732-3487751 Msa0309060:CDS 30.0%
! CTCTGCTTCTATTTTGTAAA+AGG + chr2_4:3487826-3487845 None:intergenic 30.0%
AAAAGAGAACAAAAACAACC+TGG - chr2_4:3487877-3487896 Msa0309060:intron 30.0%
TATATGGCTATCAAGACATA+TGG + chr2_4:3488079-3488098 None:intergenic 30.0%
! GATCTGATAATTGACTTCAA+AGG - chr2_4:3488204-3488223 Msa0309060:intron 30.0%
GTTGTGAAATTCAAACCATT+TGG - chr2_4:3488310-3488329 Msa0309060:intron 30.0%
AATTCTGTACACTGTCTATT+TGG - chr2_4:3488476-3488495 Msa0309060:intron 30.0%
! CTTTCTTTTAATGAAACGCA+TGG + chr2_4:3488572-3488591 None:intergenic 30.0%
TTTCTGTACATGTAGGATTA+TGG - chr2_4:3488637-3488656 Msa0309060:intron 30.0%
TAATATGTAGTGACTGTTTC+AGG - chr2_4:3488826-3488845 Msa0309060:intron 30.0%
! ATCATAATGTTTTCACACAG+TGG - chr2_4:3489144-3489163 Msa0309060:intron 30.0%
TAGCTCCATTATGTTGTAAT+CGG - chr2_4:3489226-3489245 Msa0309060:intron 30.0%
AAATCCCGATTACAACATAA+TGG + chr2_4:3489234-3489253 None:intergenic 30.0%
!! TGTAATCGGGATTTTTAGAA+TGG - chr2_4:3489240-3489259 Msa0309060:intron 30.0%
ATGCTATGTCTGAATTGTAT+CGG - chr2_4:3489454-3489473 Msa0309060:CDS 30.0%
AATTGTATCGGAACAAGATT+TGG - chr2_4:3489466-3489485 Msa0309060:CDS 30.0%
ATGCTATGTCTGAATTGTAT+CGG - chr2_4:3489454-3489473 Msa0309060:CDS 30.0%
AATTGTATCGGAATGAGATT+TGG - chr2_4:3489516-3489535 Msa0309060:intron 30.0%
TCGTGATATTATTGCTAGTA+CGG - chr2_4:3489569-3489588 Msa0309060:intron 30.0%
ATCAATCACGAAAGGAAATG+AGG + chr2_4:3484866-3484885 None:intergenic 35.0%
ACGAAACGAAACGAAAGAAA+AGG - chr2_4:3484919-3484938 Msa0309060:three_prime_UTR 35.0%
AGAAGAAGAAGAAGGTTGAA+GGG + chr2_4:3485034-3485053 None:intergenic 35.0%
AAGAAGAAGAAGAAGGTTGA+AGG + chr2_4:3485035-3485054 None:intergenic 35.0%
! CTGGTACCAATGTTTCTTTT+AGG - chr2_4:3485160-3485179 Msa0309060:three_prime_UTR 35.0%
AGTTATGATGAATATGGCCT+TGG + chr2_4:3485270-3485289 None:intergenic 35.0%
TTCAACGATACACATCCATT+TGG - chr2_4:3485378-3485397 Msa0309060:three_prime_UTR 35.0%
!! AAGTTTTGTGAGACTGTTTG+GGG - chr2_4:3485528-3485547 Msa0309060:CDS 35.0%
! GCTATAGAAGTAGCTTTTGT+AGG - chr2_4:3485679-3485698 Msa0309060:intron 35.0%
ATATGTTAAAAGGGCCTGTT+TGG + chr2_4:3485751-3485770 None:intergenic 35.0%
TCTCACAAAACTTATGCCAA+CGG - chr2_4:3486035-3486054 Msa0309060:intron 35.0%
CAAAAGATAAAGGGTCTGTT+TGG + chr2_4:3486081-3486100 None:intergenic 35.0%
! GACCCTTTATCTTTTGTTAG+AGG - chr2_4:3486085-3486104 Msa0309060:intron 35.0%
TGGTAGAAAATAGGCTTAGA+TGG - chr2_4:3486150-3486169 Msa0309060:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG - chr2_4:3486155-3486174 Msa0309060:intron 35.0%
TTGATCTACTCTTCTTACCA+CGG + chr2_4:3486207-3486226 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG - chr2_4:3486208-3486227 Msa0309060:intron 35.0%
AAGAAGAGTAGATCAAATGG+AGG - chr2_4:3486211-3486230 Msa0309060:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr2_4:3486295-3486314 Msa0309060:intron 35.0%
! CAATGAGTTGGATCCAAATA+TGG - chr2_4:3486307-3486326 Msa0309060:intron 35.0%
AACAACTCAGTTTCGGAAAT+TGG - chr2_4:3486558-3486577 Msa0309060:intron 35.0%
ACAACTCAGTTTCGGAAATT+GGG - chr2_4:3486559-3486578 Msa0309060:intron 35.0%
AAATCGATGGCAATGTTGTA+CGG - chr2_4:3486751-3486770 Msa0309060:intron 35.0%
!! GCGTTTACATAAGCTTTAAG+AGG - chr2_4:3487078-3487097 Msa0309060:intron 35.0%
!!! GCAGAAGTACCATGTTTTAT+GGG - chr2_4:3487662-3487681 Msa0309060:CDS 35.0%
TCACTCTAACCCATAAAACA+TGG + chr2_4:3487674-3487693 None:intergenic 35.0%
!! TTTATGGGTTAGAGTGACAA+AGG - chr2_4:3487677-3487696 Msa0309060:CDS 35.0%
ATATAACACTCACCAATCGA+GGG - chr2_4:3488094-3488113 Msa0309060:intron 35.0%
! ACACCTGTAGTTGAAGTTTT+TGG - chr2_4:3488154-3488173 Msa0309060:intron 35.0%
! CACCTGTAGTTGAAGTTTTT+GGG - chr2_4:3488155-3488174 Msa0309060:intron 35.0%
ATGTGTAACTTCATCCCAAA+TGG + chr2_4:3488328-3488347 None:intergenic 35.0%
AAGGCTAGACATTTACTAAC+TGG + chr2_4:3488438-3488457 None:intergenic 35.0%
TGAGTAACAGCAACAGTTAA+AGG + chr2_4:3488457-3488476 None:intergenic 35.0%
!! ATTTGGTGGTATGGGATTTT+AGG - chr2_4:3488493-3488512 Msa0309060:intron 35.0%
TGAATTCTAACCAACGTACA+CGG + chr2_4:3488604-3488623 None:intergenic 35.0%
AGGATTATGGTTATTGAGTC+TGG - chr2_4:3488650-3488669 Msa0309060:intron 35.0%
!! TTCAGGTTCTAGAGGAATTA+AGG - chr2_4:3488843-3488862 Msa0309060:intron 35.0%
! TCTTGAATTGGTAGCAATTG+AGG - chr2_4:3488895-3488914 Msa0309060:intron 35.0%
AATTGAGGAGCCAATAGTAA+AGG - chr2_4:3488910-3488929 Msa0309060:intron 35.0%
! GTTCAGCTGCTATGATATTT+TGG - chr2_4:3489022-3489041 Msa0309060:intron 35.0%
ATGTCATACTTCATTCCCAT+TGG + chr2_4:3489103-3489122 None:intergenic 35.0%
! ATAATGTTTTCACACAGTGG+AGG - chr2_4:3489147-3489166 Msa0309060:intron 35.0%
AGCTCCATTATGTTGTAATC+GGG - chr2_4:3489227-3489246 Msa0309060:intron 35.0%
TTCCATTAGTGGCAACATTA+TGG + chr2_4:3489387-3489406 None:intergenic 35.0%
CGTTAAGTTCTTTCCATTAG+TGG + chr2_4:3489398-3489417 None:intergenic 35.0%
AAGAACTTAACGCTATCAAG+TGG - chr2_4:3489406-3489425 Msa0309060:intron 35.0%
ATCGGAATGAGATTTGGAAA+TGG - chr2_4:3489522-3489541 Msa0309060:intron 35.0%
! TGGAGTGTCAAAACTATTTG+TGG - chr2_4:3489542-3489561 Msa0309060:intron 35.0%
CGTGATATTATTGCTAGTAC+GGG - chr2_4:3489570-3489589 Msa0309060:intron 35.0%
GTGATATTATTGCTAGTACG+GGG - chr2_4:3489571-3489590 Msa0309060:intron 35.0%
GACGAGGTTGTTTGTATATT+TGG - chr2_4:3489601-3489620 Msa0309060:intron 35.0%
GAAAGGAAGAAACGGAACTT+TGG - chr2_4:3484769-3484788 Msa0309060:three_prime_UTR 40.0%
AATCACGAAAGGAAATGAGG+AGG + chr2_4:3484863-3484882 None:intergenic 40.0%
! GTGATGGAAGAAGAAGAAGA+AGG + chr2_4:3485042-3485061 None:intergenic 40.0%
TTCTTCCATCACCCTCAAAA+AGG - chr2_4:3485050-3485069 Msa0309060:three_prime_UTR 40.0%
! ATGAATATGGCCTTGGAAGT+AGG + chr2_4:3485263-3485282 None:intergenic 40.0%
ATGCTGTCTCAAATGGGATT+GGG + chr2_4:3485508-3485527 None:intergenic 40.0%
TATGCTGTCTCAAATGGGAT+TGG + chr2_4:3485509-3485528 None:intergenic 40.0%
!! AGTTTTGTGAGACTGTTTGG+GGG - chr2_4:3485529-3485548 Msa0309060:CDS 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr2_4:3486236-3486255 Msa0309060:intron 40.0%
AATGTGAATAAGCATGGCAC+TGG - chr2_4:3486478-3486497 Msa0309060:intron 40.0%
TGTTGTACGGTTGAAGTTAC+AGG - chr2_4:3486764-3486783 Msa0309060:intron 40.0%
GTTGTACGGTTGAAGTTACA+GGG - chr2_4:3486765-3486784 Msa0309060:intron 40.0%
! TTCATCATTTAGCTCGAGAC+CGG + chr2_4:3486904-3486923 None:intergenic 40.0%
TGAAGCATATAGTACTTGGG+CGG - chr2_4:3487131-3487150 Msa0309060:intron 40.0%
TGAAGCATATAGTACTTGGG+CGG - chr2_4:3487131-3487150 Msa0309060:intron 40.0%
GGTAGGCTTAAACGATATAC+AGG + chr2_4:3487576-3487595 None:intergenic 40.0%
!! ACATGGTACTTCTGCCATTT+TGG + chr2_4:3487657-3487676 None:intergenic 40.0%
!!! GGCAGAAGTACCATGTTTTA+TGG - chr2_4:3487661-3487680 Msa0309060:CDS 40.0%
AGAAAGGGGATGAGTAATTG+AGG - chr2_4:3487789-3487808 Msa0309060:CDS 40.0%
AGAGAACAAAAACAACCTGG+AGG - chr2_4:3487880-3487899 Msa0309060:intron 40.0%
CTCGATTGGTGAGTGTTATA+TGG + chr2_4:3488095-3488114 None:intergenic 40.0%
CATATAACACTCACCAATCG+AGG - chr2_4:3488093-3488112 Msa0309060:intron 40.0%
CTCCCAAAAACTTCAACTAC+AGG + chr2_4:3488160-3488179 None:intergenic 40.0%
CTAACTGGCTACTTCTTACA+AGG + chr2_4:3488423-3488442 None:intergenic 40.0%
TCTGTACACTGTCTATTTGG+TGG - chr2_4:3488479-3488498 Msa0309060:intron 40.0%
! ACACTGTCTATTTGGTGGTA+TGG - chr2_4:3488484-3488503 Msa0309060:intron 40.0%
! CACTGTCTATTTGGTGGTAT+GGG - chr2_4:3488485-3488504 Msa0309060:intron 40.0%
! CTGCGTTTTTCTGTACATGT+AGG - chr2_4:3488630-3488649 Msa0309060:intron 40.0%
! GTGATTCGGACCTTTACTAT+TGG + chr2_4:3488923-3488942 None:intergenic 40.0%
ATAGTAAAGGTCCGAATCAC+AGG - chr2_4:3488923-3488942 Msa0309060:intron 40.0%
CTCCATAATGTTGCCACTAA+TGG - chr2_4:3489382-3489401 Msa0309060:intron 40.0%
ATTGCTAGTACGGGGTTTAA+AGG - chr2_4:3489579-3489598 Msa0309060:intron 40.0%
CTTATGTTGCACTTGAGCTT+AGG - chr2_4:3489626-3489645 Msa0309060:intron 40.0%
AGGAAGAAACGGAACTTTGG+TGG - chr2_4:3484772-3484791 Msa0309060:three_prime_UTR 45.0%
GGAAGAAACGGAACTTTGGT+GGG - chr2_4:3484773-3484792 Msa0309060:three_prime_UTR 45.0%
TGACGTGACTGGTGAGAATT+TGG - chr2_4:3484831-3484850 Msa0309060:three_prime_UTR 45.0%
TCCATCACCCTCAAAAAGGT+AGG - chr2_4:3485054-3485073 Msa0309060:three_prime_UTR 45.0%
!! ACCTACCTTTTTGAGGGTGA+TGG + chr2_4:3485058-3485077 None:intergenic 45.0%
CGTGTATGAAAGGAAAGGGA+AGG + chr2_4:3485216-3485235 None:intergenic 45.0%
CGGACGTGTATGAAAGGAAA+GGG + chr2_4:3485220-3485239 None:intergenic 45.0%
ACGGACGTGTATGAAAGGAA+AGG + chr2_4:3485221-3485240 None:intergenic 45.0%
TCCTTTCATACACGTCCGTT+TGG - chr2_4:3485222-3485241 Msa0309060:three_prime_UTR 45.0%
ACCAAACGGACGTGTATGAA+AGG + chr2_4:3485226-3485245 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG - chr2_4:3486220-3486239 Msa0309060:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG - chr2_4:3486230-3486249 Msa0309060:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr2_4:3486377-3486396 None:intergenic 45.0%
AGTTTCGGAAATTGGGAGCT+GGG - chr2_4:3486566-3486585 Msa0309060:intron 45.0%
! AGCTGAATTTGGAGTGGCAA+CGG + chr2_4:3486637-3486656 None:intergenic 45.0%
TTCCACAGCTGAATTTGGAG+TGG + chr2_4:3486643-3486662 None:intergenic 45.0%
GGCAATTCCACAGCTGAATT+TGG + chr2_4:3486648-3486667 None:intergenic 45.0%
CCACCGTCTGATATGAGATA+CGG + chr2_4:3486714-3486733 None:intergenic 45.0%
GTCGCTCTACATGAAATCGA+TGG - chr2_4:3486738-3486757 Msa0309060:intron 45.0%
GTTCGACTGCGACTATTTCA+GGG + chr2_4:3486863-3486882 None:intergenic 45.0%
TGAAATAGTCGCAGTCGAAC+CGG - chr2_4:3486863-3486882 Msa0309060:intron 45.0%
CCGGTTTCTTCATCAGTTAC+CGG + chr2_4:3486885-3486904 None:intergenic 45.0%
CCGGTAACTGATGAAGAAAC+CGG - chr2_4:3486882-3486901 Msa0309060:intron 45.0%
!! AGGAGGCATTGCAATCATAC+TGG - chr2_4:3487608-3487627 Msa0309060:CDS 45.0%
!! GGAGGCATTGCAATCATACT+GGG - chr2_4:3487609-3487628 Msa0309060:CDS 45.0%
!! ATGGGTTAGAGTGACAAAGG+AGG - chr2_4:3487680-3487699 Msa0309060:CDS 45.0%
AGAAAAACAGGAACACCTCC+AGG + chr2_4:3487898-3487917 None:intergenic 45.0%
!! GTGACTGTTTCAGGTTCTAG+AGG - chr2_4:3488835-3488854 Msa0309060:intron 45.0%
AATTAAGGCCGTACCTGGTA+GGG - chr2_4:3488858-3488877 Msa0309060:intron 45.0%
AGCTGGTGGAACTCTTGAAT+TGG - chr2_4:3488883-3488902 Msa0309060:intron 45.0%
AGAAACGGAACTTTGGTGGG+TGG - chr2_4:3484776-3484795 Msa0309060:three_prime_UTR 50.0%
! GAAACGGAACTTTGGTGGGT+GGG - chr2_4:3484777-3484796 Msa0309060:three_prime_UTR 50.0%
TGCGATTGGCGATGGTGTTT+GGG - chr2_4:3484805-3484824 Msa0309060:three_prime_UTR 50.0%
GAAAATCAGCACCCGATGCA+AGG - chr2_4:3484970-3484989 Msa0309060:intron 50.0%
!! TCTTTGTTGTTGCAGGGCAC+TGG - chr2_4:3485141-3485160 Msa0309060:three_prime_UTR 50.0%
TGAAAGGAAAGGGAAGGACG+CGG + chr2_4:3485210-3485229 None:intergenic 50.0%
GTCTCAAATGGGATTGGGCA+TGG + chr2_4:3485503-3485522 None:intergenic 50.0%
TCTTCTTACCACGGCGTCTA+CGG + chr2_4:3486198-3486217 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr2_4:3486372-3486391 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr2_4:3486376-3486395 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr2_4:3486378-3486397 None:intergenic 50.0%
! GTGAATAAGCATGGCACTGG+AGG - chr2_4:3486481-3486500 Msa0309060:intron 50.0%
CAGTTTCGGAAATTGGGAGC+TGG - chr2_4:3486565-3486584 Msa0309060:intron 50.0%
TGCCACTCCAAATTCAGCTG+TGG - chr2_4:3486638-3486657 Msa0309060:intron 50.0%
CGGCCGTATCTCATATCAGA+CGG - chr2_4:3486708-3486727 Msa0309060:intron 50.0%
CCGTATCTCATATCAGACGG+TGG - chr2_4:3486711-3486730 Msa0309060:intron 50.0%
! TTGAAGTTACAGGGTGCCTG+TGG - chr2_4:3486774-3486793 Msa0309060:intron 50.0%
! TGAAGTTACAGGGTGCCTGT+GGG - chr2_4:3486775-3486794 Msa0309060:intron 50.0%
!! GGGCATTGAGCGTCGATTAA+TGG - chr2_4:3486830-3486849 Msa0309060:intron 50.0%
GGTTCGACTGCGACTATTTC+AGG + chr2_4:3486864-3486883 None:intergenic 50.0%
AGCCTACCAGCTAGATTCAG+AGG - chr2_4:3487588-3487607 Msa0309060:CDS 50.0%
CTCCTCTGAATCTAGCTGGT+AGG + chr2_4:3487593-3487612 None:intergenic 50.0%
CTACCAGCTAGATTCAGAGG+AGG - chr2_4:3487591-3487610 Msa0309060:CDS 50.0%
ATGCCTCCTCTGAATCTAGC+TGG + chr2_4:3487597-3487616 None:intergenic 50.0%
GATGCTTTGTCCGTGTACGT+TGG - chr2_4:3488591-3488610 Msa0309060:intron 50.0%
AGAGGAATTAAGGCCGTACC+TGG - chr2_4:3488853-3488872 Msa0309060:intron 50.0%
GAATTAAGGCCGTACCTGGT+AGG - chr2_4:3488857-3488876 Msa0309060:intron 50.0%
ATTAAGGCCGTACCTGGTAG+GGG - chr2_4:3488859-3488878 Msa0309060:intron 50.0%
AACACGCACAGTCATGACAC+CGG + chr2_4:3488957-3488976 None:intergenic 50.0%
TAGCAGCTGAACTGCTGCTA+TGG + chr2_4:3489014-3489033 None:intergenic 50.0%
AGTACGGGGTTTAAAGGACG+AGG - chr2_4:3489585-3489604 Msa0309060:intron 50.0%
GTGCGATTGGCGATGGTGTT+TGG - chr2_4:3484804-3484823 Msa0309060:three_prime_UTR 55.0%
GATTGGCGATGGTGTTTGGG+TGG - chr2_4:3484808-3484827 Msa0309060:three_prime_UTR 55.0%
! TGTTTGGGTGGTGACGTGAC+TGG - chr2_4:3484820-3484839 Msa0309060:three_prime_UTR 55.0%
AGCACCACCACACCTTGCAT+CGG + chr2_4:3484985-3485004 None:intergenic 55.0%
CTTCTTACCACGGCGTCTAC+GGG + chr2_4:3486197-3486216 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr2_4:3486364-3486383 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr2_4:3486363-3486382 Msa0309060:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr2_4:3486364-3486383 Msa0309060:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr2_4:3486370-3486389 Msa0309060:intron 55.0%
TCACCAATCGAGGGTGAGTG+TGG - chr2_4:3488103-3488122 Msa0309060:intron 55.0%
ATGCCACACTCACCCTCGAT+TGG + chr2_4:3488109-3488128 None:intergenic 55.0%
AGCTGAACTGCTGCTATGGC+AGG + chr2_4:3489010-3489029 None:intergenic 55.0%
GCACTTGAGCTTAGGCAGAG+AGG - chr2_4:3489634-3489653 Msa0309060:intron 55.0%
! ACGGAACTTTGGTGGGTGGG+TGG - chr2_4:3484780-3484799 Msa0309060:three_prime_UTR 60.0%
TCAGCACCCGATGCAAGGTG+TGG - chr2_4:3484975-3484994 Msa0309060:intron 60.0%
GCACCACCACACCTTGCATC+GGG + chr2_4:3484984-3485003 None:intergenic 60.0%
AAAGGGAAGGACGCGGCAGA+AGG + chr2_4:3485203-3485222 None:intergenic 60.0%
AGAACTCGGACACGACCCAC+AGG + chr2_4:3486793-3486812 None:intergenic 60.0%
CGGCAGCTGGACCTGTGATT+CGG + chr2_4:3488937-3488956 None:intergenic 60.0%
CGAATCACAGGTCCAGCTGC+CGG - chr2_4:3488935-3488954 Msa0309060:intron 60.0%
ACAGTCATGACACCGGCAGC+TGG + chr2_4:3488950-3488969 None:intergenic 60.0%
GTGGGTGGGTGGTGTGCGAT+TGG - chr2_4:3484791-3484810 Msa0309060:three_prime_UTR 65.0%
GGGTGGTGTGCGATTGGCGA+TGG - chr2_4:3484797-3484816 Msa0309060:three_prime_UTR 65.0%
GCACCCGATGCAAGGTGTGG+TGG - chr2_4:3484978-3484997 Msa0309060:intron 65.0%
GAGAAGACCCGTAGACGCCG+TGG - chr2_4:3486187-3486206 Msa0309060:intron 65.0%
CCAGCTGCCCCTACCAGGTA+CGG + chr2_4:3488869-3488888 None:intergenic 65.0%
TACCTGGTAGGGGCAGCTGG+TGG - chr2_4:3488869-3488888 Msa0309060:intron 65.0%
TTCCACCAGCTGCCCCTACC+AGG + chr2_4:3488874-3488893 None:intergenic 65.0%
CCGTACCTGGTAGGGGCAGC+TGG - chr2_4:3488866-3488885 Msa0309060:intron 70.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 3484767 3489724 3484767 ID=Msa0309060;Name=Msa0309060
chr2_4 mRNA 3484767 3489724 3484767 ID=Msa0309060-mRNA-1;Parent=Msa0309060;Name=Msa0309060-mRNA-1;_AED=0.10;_eAED=0.10;_QI=89|1|1|1|0.6|0.5|6|638|224
chr2_4 exon 3484767 3484980 3484767 ID=Msa0309060-mRNA-1:exon:1118;Parent=Msa0309060-mRNA-1
chr2_4 exon 3485031 3485643 3485031 ID=Msa0309060-mRNA-1:exon:1117;Parent=Msa0309060-mRNA-1
chr2_4 exon 3487556 3487866 3487556 ID=Msa0309060-mRNA-1:exon:1116;Parent=Msa0309060-mRNA-1
chr2_4 exon 3489248 3489335 3489248 ID=Msa0309060-mRNA-1:exon:1115;Parent=Msa0309060-mRNA-1
chr2_4 exon 3489420 3489520 3489420 ID=Msa0309060-mRNA-1:exon:1114;Parent=Msa0309060-mRNA-1
chr2_4 exon 3489650 3489724 3489650 ID=Msa0309060-mRNA-1:exon:1113;Parent=Msa0309060-mRNA-1
chr2_4 five_prime_UTR 3489650 3489724 3489650 ID=Msa0309060-mRNA-1:five_prime_utr;Parent=Msa0309060-mRNA-1
chr2_4 five_prime_UTR 3489507 3489520 3489507 ID=Msa0309060-mRNA-1:five_prime_utr;Parent=Msa0309060-mRNA-1
chr2_4 CDS 3489420 3489506 3489420 ID=Msa0309060-mRNA-1:cds;Parent=Msa0309060-mRNA-1
chr2_4 CDS 3489248 3489335 3489248 ID=Msa0309060-mRNA-1:cds;Parent=Msa0309060-mRNA-1
chr2_4 CDS 3487556 3487866 3487556 ID=Msa0309060-mRNA-1:cds;Parent=Msa0309060-mRNA-1
chr2_4 CDS 3485455 3485643 3485455 ID=Msa0309060-mRNA-1:cds;Parent=Msa0309060-mRNA-1
chr2_4 three_prime_UTR 3485031 3485454 3485031 ID=Msa0309060-mRNA-1:three_prime_utr;Parent=Msa0309060-mRNA-1
chr2_4 three_prime_UTR 3484767 3484980 3484767 ID=Msa0309060-mRNA-1:three_prime_utr;Parent=Msa0309060-mRNA-1
Gene Sequence

>Msa0309060

ATGCAAGGTGTGGTGGTGCTCAACACACAATCTTACTGCACAGCTACCCTTCAACCTTCTTCTTCTTCTTCCATCACCCTCAAAAAGGGCACTGGTACCAATGTTTCTTTTAGGACAACAAGTAACAACAACCTTCTGCCGCGTCCTTCCCTTTCCTTTCATACACGTCCGTTTGCTATAAAGGCCGTTGCCACTCCAAATTCAGCTGTGGAATTGCCATTAACTGCTGAAAATGTAGAAACTGTGTTGGATGAAATTCGGCCGTATCTCATATCAGACGGTGGAAATGTCGCTCTACATGAAATCGATGGCAATGTTGTACGGTTGAAGTTACAGGGTGCCTGTGGGTCGTGTCCGAGTTCTGTTATGACAATGAAAATGGGCATTGAGCGTCGATTAATGGAAAAGATCCCTGAAATAGTCGCAGTCGAACCGGTAACTGATGAAGAAACCGGTCTCGAGCTAAATGATGAAAATATAGAGAAGGTTCTAGAGGAATTAAGGCCGTACCTGGTAGGGGCAGCTGGTGGAACTCTTGAATTGGTAGCAATTGAGGAGCCAATAGTAAAGGTCCGAATCACAGGTCCAGCTGCCGGTGTCATGACTGTGCGTGTTGCTGTTACACAAAAATTGCGAGAAAAAATACCTGCCATAGCAGCAGTTCAGCTGCTATGA

Protein sequence

>Msa0309060

MQGVVVLNTQSYCTATLQPSSSSSITLKKGTGTNVSFRTTSNNNLLPRPSLSFHTRPFAIKAVATPNSAVELPLTAENVETVLDEIRPYLISDGGNVALHEIDGNVVRLKLQGACGSCPSSVMTMKMGIERRLMEKIPEIVAVEPVTDEETGLELNDENIEKVLEELRPYLVGAAGGTLELVAIEEPIVKVRITGPAAGVMTVRVAVTQKLREKIPAIAAVQLL*