Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1178920 | XP_013444428.1 | 96.618 | 680 | 5 | 3 | 1 | 665 | 1 | 677 | 0.0 | 1352 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1178920 | sp|Q9FNA9|PDAT1_ARATH | 72.449 | 686 | 153 | 6 | 1 | 665 | 1 | 671 | 0.0 | 1022 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006820 | Msa1178920 | 0.817204 | 3.722430e-52 | -8.615850e-47 |
Msa0008850 | Msa1178920 | 0.814481 | 1.507332e-51 | -8.615850e-47 |
Msa0050500 | Msa1178920 | 0.814655 | 1.379628e-51 | -8.615850e-47 |
Msa0057260 | Msa1178920 | 0.841482 | 4.627990e-58 | -8.615850e-47 |
Msa0100910 | Msa1178920 | 0.814477 | 1.510323e-51 | -8.615850e-47 |
Msa0103060 | Msa1178920 | 0.806813 | 6.853741e-50 | -8.615850e-47 |
Msa0617830 | Msa1178920 | 0.805421 | 1.346154e-49 | -8.615850e-47 |
Msa0620750 | Msa1178920 | 0.821243 | 4.477167e-53 | -8.615850e-47 |
Msa0646390 | Msa1178920 | 0.815447 | 9.203268e-52 | -8.615850e-47 |
Msa0656680 | Msa1178920 | 0.800522 | 1.385231e-48 | -8.615850e-47 |
Msa0669200 | Msa1178920 | 0.802739 | 4.862646e-49 | -8.615850e-47 |
Msa0690720 | Msa1178920 | 0.808046 | 3.753729e-50 | -8.615850e-47 |
Msa0714340 | Msa1178920 | 0.834322 | 3.204640e-56 | -8.615850e-47 |
Msa0714380 | Msa1178920 | 0.808439 | 3.095371e-50 | -8.615850e-47 |
Msa0789270 | Msa1178920 | 0.809142 | 2.189609e-50 | -8.615850e-47 |
Msa0789280 | Msa1178920 | 0.804927 | 1.707853e-49 | -8.615850e-47 |
Msa0789290 | Msa1178920 | 0.804933 | 1.702684e-49 | -8.615850e-47 |
Msa0789300 | Msa1178920 | 0.805048 | 1.611268e-49 | -8.615850e-47 |
Msa0836190 | Msa1178920 | 0.810191 | 1.303112e-50 | -8.615850e-47 |
Msa0151690 | Msa1178920 | 0.815024 | 1.142831e-51 | -8.615850e-47 |
Msa0230980 | Msa1178920 | 0.800187 | 1.621026e-48 | -8.615850e-47 |
Msa0427050 | Msa1178920 | 0.814809 | 1.274855e-51 | -8.615850e-47 |
Msa0982590 | Msa1178920 | 0.814812 | 1.273218e-51 | -8.615850e-47 |
Msa1080770 | Msa1178920 | 0.832589 | 8.671256e-56 | -8.615850e-47 |
Msa1089530 | Msa1178920 | 0.809178 | 2.151603e-50 | -8.615850e-47 |
Msa0259330 | Msa1178920 | 0.802098 | 6.591856e-49 | -8.615850e-47 |
Msa0270460 | Msa1178920 | 0.811326 | 7.404863e-51 | -8.615850e-47 |
Msa0309060 | Msa1178920 | 0.809172 | 2.157637e-50 | -8.615850e-47 |
Msa0318000 | Msa1178920 | 0.801646 | 8.163012e-49 | -8.615850e-47 |
Msa1118910 | Msa1178920 | 0.820671 | 6.064226e-53 | -8.615850e-47 |
Msa1178920 | Msa1195860 | 0.812980 | 3.225852e-51 | -8.615850e-47 |
Msa1178920 | Msa1198450 | 0.812291 | 4.565845e-51 | -8.615850e-47 |
Msa1178920 | Msa1208810 | 0.830818 | 2.369859e-55 | -8.615850e-47 |
Msa1178920 | Msa1233820 | 0.873834 | 1.081430e-67 | -8.615850e-47 |
Msa1178920 | Msa1255520 | 0.818112 | 2.323502e-52 | -8.615850e-47 |
Msa1178920 | Msa1259010 | 0.831962 | 1.239713e-55 | -8.615850e-47 |
Msa1178920 | Msa1276110 | 0.890779 | 7.237398e-74 | -8.615850e-47 |
Msa1178920 | Msa1284030 | 0.830273 | 3.223028e-55 | -8.615850e-47 |
Msa1178920 | Msa1302780 | 0.811531 | 6.682401e-51 | -8.615850e-47 |
Msa1178920 | Msa1314330 | 0.885980 | 5.089719e-72 | -8.615850e-47 |
Msa1178920 | Msa1323060 | 0.820753 | 5.805374e-53 | -8.615850e-47 |
Msa1178920 | Msa1327820 | 0.833010 | 6.818458e-56 | -8.615850e-47 |
Msa1178920 | Msa1349360 | 0.807611 | 4.645775e-50 | -8.615850e-47 |
Msa1178920 | Msa1370650 | 0.849977 | 2.286054e-60 | -8.615850e-47 |
Msa1178920 | Msa1435470 | 0.813485 | 2.500025e-51 | -8.615850e-47 |
Msa1178920 | Msa1458920 | 0.805898 | 1.068985e-49 | -8.615850e-47 |
Msa0549740 | Msa1178920 | 0.816278 | 6.005187e-52 | -8.615850e-47 |
Msa0563650 | Msa1178920 | -0.802870 | 4.569688e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1178920 | MtrunA17_Chr8g0343491 | 96.618 | 680 | 5 | 3 | 1 | 665 | 1 | 677 | 0.0 | 1352 |
Msa1178920 | MtrunA17_Chr4g0027511 | 52.019 | 644 | 266 | 11 | 54 | 665 | 6 | 638 | 0.0 | 659 |
Msa1178920 | MtrunA17_Chr6g0462921 | 54.286 | 105 | 31 | 2 | 229 | 333 | 38 | 125 | 3.15e-26 | 104 |
Msa1178920 | MtrunA17_Chr4g0070721 | 37.963 | 108 | 27 | 2 | 558 | 665 | 35 | 102 | 5.28e-16 | 74.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1178920 | AT5G13640.1 | 72.449 | 686 | 153 | 6 | 1 | 665 | 1 | 671 | 0.0 | 1022 |
Msa1178920 | AT5G13640.3 | 75.479 | 522 | 110 | 3 | 162 | 665 | 6 | 527 | 0.0 | 810 |
Msa1178920 | AT5G13640.2 | 75.340 | 515 | 109 | 3 | 169 | 665 | 1 | 515 | 0.0 | 796 |
Msa1178920 | AT3G44830.1 | 55.621 | 676 | 251 | 10 | 23 | 665 | 6 | 665 | 0.0 | 773 |
Msa1178920 | AT1G04010.1 | 22.774 | 483 | 304 | 17 | 123 | 585 | 44 | 477 | 1.83e-16 | 83.6 |
Find 219 sgRNAs with CRISPR-Local
Find 419 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACAATTGCCTTAATATATT+TGG | 0.103968 | 8_1:-11804812 | None:intergenic |
TAAGATGCACTCAGAATTTC+TGG | 0.156244 | 8_1:+11807964 | Msa1178920:three_prime_UTR |
AATATAATAATAATATTTAT+TGG | 0.159415 | 8_1:-11807785 | None:intergenic |
TTGGATTCCTCTCCCGTTAC+TGG | 0.191227 | 8_1:+11807732 | Msa1178920:three_prime_UTR |
TATTTGTAGTGTTCATATTT+AGG | 0.211408 | 8_1:-11806202 | None:intergenic |
TTGTTAACAGGGTGCAATTA+AGG | 0.231525 | 8_1:+11805979 | Msa1178920:intron |
TTGGTTGCATTTGTACTTTA+TGG | 0.241231 | 8_1:+11802621 | Msa1178920:CDS |
AGATTGTGGGGTGGTACTTT+TGG | 0.243250 | 8_1:+11802857 | Msa1178920:CDS |
TTGCCGCAGGATACTTTGTT+TGG | 0.248698 | 8_1:+11804420 | Msa1178920:CDS |
GGTAGTGATCATTTCTCTTA+TGG | 0.264256 | 8_1:+11806157 | Msa1178920:CDS |
CGGTGCTCATGTTGATATAA+TGG | 0.274500 | 8_1:+11807580 | Msa1178920:CDS |
TGCGTCTTCCTCTCTCCTTT+TGG | 0.281518 | 8_1:-11807761 | None:intergenic |
CATATTTGTCAGATGCTTCA+TGG | 0.282342 | 8_1:+11808082 | Msa1178920:three_prime_UTR |
AAAACAAGATTCAATCCTTC+AGG | 0.299444 | 8_1:+11807485 | Msa1178920:CDS |
TGTGTCTATTTCTTTCTTAC+CGG | 0.300944 | 8_1:+11807811 | Msa1178920:three_prime_UTR |
ATGGAAATCTTCTCTCTATA+TGG | 0.302929 | 8_1:+11807263 | Msa1178920:CDS |
ACCTCCCAATTCTTCTCCTT+TGG | 0.306639 | 8_1:-11807648 | None:intergenic |
TTACCGGTGGACTTGAACTT+TGG | 0.316075 | 8_1:+11802798 | Msa1178920:CDS |
CGCCTTATTTCCACCATTAG+TGG | 0.316185 | 8_1:-11804686 | None:intergenic |
TTCCACTAATGGTGGAAATA+AGG | 0.317590 | 8_1:+11804684 | Msa1178920:CDS |
CTTATAAATATAAGCTCTTT+CGG | 0.325469 | 8_1:-11807300 | None:intergenic |
AGGAGCCAAAGGAGAAGAAT+TGG | 0.328819 | 8_1:+11807643 | Msa1178920:CDS |
TGTATTCTGATATCTTTAAA+TGG | 0.332543 | 8_1:+11807678 | Msa1178920:CDS |
GTTACCAAATGCCCCTGATA+TGG | 0.335640 | 8_1:+11807244 | Msa1178920:CDS |
GACAGTTGTTGTTGGTTTGT+TGG | 0.336488 | 8_1:+11802602 | Msa1178920:CDS |
GAACTCATGGTTTCCACTAA+TGG | 0.339436 | 8_1:+11804673 | Msa1178920:CDS |
TTTGTTCCCGGGATTGTTAC+CGG | 0.341600 | 8_1:+11802782 | Msa1178920:CDS |
AGAGAGAAGATTTCCATATC+AGG | 0.346793 | 8_1:-11807257 | None:intergenic |
AAAACATTAGATTTGTTGTA+TGG | 0.353623 | 8_1:+11808044 | Msa1178920:three_prime_UTR |
GAAATTCTGAGTGCATCTTA+TGG | 0.353986 | 8_1:-11807961 | None:intergenic |
CAAAGGGAGGGGACACCATA+TGG | 0.361138 | 8_1:+11805423 | Msa1178920:CDS |
CCACTCTTTCATTTCTCTAA+AGG | 0.367580 | 8_1:+11807883 | Msa1178920:three_prime_UTR |
ATTCCAGTGAGTGGCGAAAC+AGG | 0.369077 | 8_1:+11808006 | Msa1178920:three_prime_UTR |
GTGGACTGAATACCATGATA+TGG | 0.370394 | 8_1:+11806036 | Msa1178920:CDS |
TTGTCACCACCATCGGCATT+AGG | 0.371415 | 8_1:-11807365 | None:intergenic |
AATATGAACACTACAAATAT+TGG | 0.371581 | 8_1:+11806206 | Msa1178920:CDS |
AATAAAACAAATGTTAACTA+TGG | 0.372300 | 8_1:+11805536 | Msa1178920:CDS |
ATTTCCATATCAGGGGCATT+TGG | 0.379794 | 8_1:-11807248 | None:intergenic |
TACCGGTGGACTTGAACTTT+GGG | 0.383614 | 8_1:+11802799 | Msa1178920:CDS |
CTTCCTGTTTCGCCACTCAC+TGG | 0.394705 | 8_1:-11808009 | None:intergenic |
ACCGTTCCAGTTCTAAGTTC+AGG | 0.399109 | 8_1:+11807434 | Msa1178920:CDS |
TGCCGCAGGATACTTTGTTT+GGG | 0.402404 | 8_1:+11804421 | Msa1178920:CDS |
AAAAGCCCTGCTATAGCCTT+TGG | 0.405655 | 8_1:-11804862 | None:intergenic |
TGTTAACAGGGTGCAATTAA+GGG | 0.405717 | 8_1:+11805980 | Msa1178920:intron |
CCTCCACCACCCATTGGAGC+TGG | 0.407920 | 8_1:-11804772 | None:intergenic |
GATTGTTTAGGAAGAGATTG+TGG | 0.412017 | 8_1:+11802843 | Msa1178920:CDS |
AAATCTCACTTTGTCTCCAA+TGG | 0.415645 | 8_1:-11806235 | None:intergenic |
ATTAGAGTCCGGCCTGTCTC+AGG | 0.417705 | 8_1:+11804377 | Msa1178920:CDS |
AGAAGAATTGGGAGGTGATA+AGG | 0.418018 | 8_1:+11807655 | Msa1178920:CDS |
CTTGTGTTGACAGTTGTTGT+TGG | 0.423297 | 8_1:+11802594 | Msa1178920:CDS |
ATATATTTGGAACACCAATC+TGG | 0.423493 | 8_1:-11804799 | None:intergenic |
CCTCCAGCCAACCTGCTAGA+AGG | 0.424011 | 8_1:+11807542 | Msa1178920:CDS |
GTGTTCCTCTACCTTCTAGC+AGG | 0.427920 | 8_1:-11807553 | None:intergenic |
AATTTCAAACCAGGTGGATC+AGG | 0.428308 | 8_1:-11802722 | None:intergenic |
TATGGAAGAATGATATCGTT+TGG | 0.432064 | 8_1:+11805554 | Msa1178920:CDS |
CGTTGATTGAAGATGTTATG+AGG | 0.435055 | 8_1:+11807612 | Msa1178920:CDS |
AATCTCACTTTGTCTCCAAT+GGG | 0.435990 | 8_1:-11806234 | None:intergenic |
CCATATGGGGCGGCCTTGAT+TGG | 0.437777 | 8_1:+11805438 | Msa1178920:CDS |
TATGTCACTGAGGCTATAAC+TGG | 0.439467 | 8_1:+11802692 | Msa1178920:CDS |
GGTGCTCATGTTGATATAAT+GGG | 0.440547 | 8_1:+11807581 | Msa1178920:CDS |
CATATGGTGTCCCCTCCCTT+TGG | 0.441069 | 8_1:-11805422 | None:intergenic |
TTGGTGTTCCAAATATATTA+AGG | 0.441232 | 8_1:+11804804 | Msa1178920:CDS |
GCTTTACTCGCAAAGGGGCG+TGG | 0.443355 | 8_1:-11807849 | None:intergenic |
AAAAGGGTCAGAACCAGAAA+AGG | 0.444668 | 8_1:+11802433 | Msa1178920:CDS |
CTACCTTCTAGCAGGTTGGC+TGG | 0.446447 | 8_1:-11807545 | None:intergenic |
GCTCCAATGGGTGGTGGAGG+AGG | 0.446584 | 8_1:+11804775 | Msa1178920:CDS |
AAGTTACCTTTGTGAGGGGT+TGG | 0.447573 | 8_1:+11807713 | Msa1178920:exon |
ATGTCCCTCGACAATGAAAC+AGG | 0.448523 | 8_1:+11804338 | Msa1178920:CDS |
ATGTATCCTGAACTTAGAAC+TGG | 0.451075 | 8_1:-11807440 | None:intergenic |
TGCTTTGCTTTCTCGTGTGA+AGG | 0.451646 | 8_1:-11805481 | None:intergenic |
GGCGGTCCTAATTGCTAACT+TGG | 0.452626 | 8_1:+11804442 | Msa1178920:CDS |
TTTCCTCTGGTGACCAATCA+AGG | 0.454472 | 8_1:-11805451 | None:intergenic |
GCTTTGATCCGAAGAAGAAA+AGG | 0.454828 | 8_1:+11802416 | Msa1178920:CDS |
CCAATCAAGGCCGCCCCATA+TGG | 0.454908 | 8_1:-11805438 | None:intergenic |
CATTCTGCTTTACTCGCAAA+GGG | 0.456332 | 8_1:-11807855 | None:intergenic |
ATCACAAGGGCGATTGCACC+AGG | 0.458509 | 8_1:+11805311 | Msa1178920:intron |
GGTTTGAAATTGAAGAAAGA+AGG | 0.461699 | 8_1:+11802734 | Msa1178920:CDS |
GTTATTATTCCACATTCGAT+GGG | 0.463783 | 8_1:+11804709 | Msa1178920:CDS |
GGTCCTCCTCCACCACCCAT+TGG | 0.468600 | 8_1:-11804778 | None:intergenic |
CCAGCTCCAATGGGTGGTGG+AGG | 0.468894 | 8_1:+11804772 | Msa1178920:CDS |
TGTGTTACAGACCTTCATGC+TGG | 0.470900 | 8_1:+11804306 | Msa1178920:intron |
CCATTCCTGTTTCATTGTCG+AGG | 0.473998 | 8_1:-11804343 | None:intergenic |
TAAATATAAGCTCTTTCGGT+TGG | 0.474291 | 8_1:-11807296 | None:intergenic |
TGTACATGGCTGCATATGAT+TGG | 0.475105 | 8_1:+11804492 | Msa1178920:CDS |
CAAGAGGTATTTGCAACATT+GGG | 0.475576 | 8_1:-11806004 | None:intergenic |
GAGAGAAGATTTCCATATCA+GGG | 0.475876 | 8_1:-11807256 | None:intergenic |
TCCTCTACCTTCTAGCAGGT+TGG | 0.476959 | 8_1:-11807549 | None:intergenic |
GGTGTTCCAAAGGCTATAGC+AGG | 0.481359 | 8_1:+11804856 | Msa1178920:CDS |
GGTTGAAGCACCAGCTCCAA+TGG | 0.483423 | 8_1:+11804762 | Msa1178920:CDS |
GTTTGTTGCTCCGAAAATGA+TGG | 0.488987 | 8_1:+11806129 | Msa1178920:CDS |
ACCTTGCAACAGCAATGTCT+CGG | 0.492893 | 8_1:-11804897 | None:intergenic |
AAGTCCACCGGTAACAATCC+CGG | 0.497142 | 8_1:-11802789 | None:intergenic |
CGGTGGACTTGAACTTTGGG+AGG | 0.499887 | 8_1:+11802802 | Msa1178920:CDS |
GAACATAAAGTTTACACAGC+TGG | 0.501037 | 8_1:+11806085 | Msa1178920:CDS |
GGTTATTATTCCACATTCGA+TGG | 0.501585 | 8_1:+11804708 | Msa1178920:CDS |
TCAGGATACATGTGTGCTAA+AGG | 0.505128 | 8_1:+11807452 | Msa1178920:CDS |
GCATTAGGATCAATTTCAAA+AGG | 0.506029 | 8_1:-11807350 | None:intergenic |
TTTGTGAAGGTAGTGAGAGA+AGG | 0.506488 | 8_1:-11802043 | None:intergenic |
TATAAGCTCTTTCGGTTGGT+AGG | 0.506491 | 8_1:-11807292 | None:intergenic |
GATGGTGTCTACACTGTTGA+TGG | 0.507653 | 8_1:+11807404 | Msa1178920:CDS |
TCGGAGCAACAAACTGAAGC+AGG | 0.508079 | 8_1:-11806120 | None:intergenic |
CAAATATTGGTCAAACCCAT+TGG | 0.508140 | 8_1:+11806219 | Msa1178920:CDS |
AAAGGGAGGGGACACCATAT+GGG | 0.509172 | 8_1:+11805424 | Msa1178920:CDS |
ATTCCTCTCCCGTTACTGGA+TGG | 0.510025 | 8_1:+11807736 | Msa1178920:three_prime_UTR |
TGAAGGCCACAGCTTTCCTC+TGG | 0.510466 | 8_1:-11805464 | None:intergenic |
GGAGCCAAAGGAGAAGAATT+GGG | 0.511925 | 8_1:+11807644 | Msa1178920:CDS |
CTCCCTCGACTCCCATATCA+TGG | 0.515621 | 8_1:-11806048 | None:intergenic |
GCATTCTGCTTTACTCGCAA+AGG | 0.516241 | 8_1:-11807856 | None:intergenic |
ACAAGAGGTATTTGCAACAT+TGG | 0.518958 | 8_1:-11806005 | None:intergenic |
AAGGGAGGGGACACCATATG+GGG | 0.519875 | 8_1:+11805425 | Msa1178920:CDS |
CATTCCTGTTTCATTGTCGA+GGG | 0.520640 | 8_1:-11804342 | None:intergenic |
ATTGTTTAGGAAGAGATTGT+GGG | 0.522996 | 8_1:+11802844 | Msa1178920:CDS |
GGAGGGGACACCATATGGGG+CGG | 0.523536 | 8_1:+11805428 | Msa1178920:CDS |
CCTTGCAACAGCAATGTCTC+GGG | 0.526953 | 8_1:-11804896 | None:intergenic |
ATCTTCTCTCTATATGGAGT+TGG | 0.529573 | 8_1:+11807269 | Msa1178920:CDS |
TCTTTCTTCAATTTCAAACC+AGG | 0.532135 | 8_1:-11802731 | None:intergenic |
TGCGTGCCAAGTTAGCAATT+AGG | 0.532533 | 8_1:-11804448 | None:intergenic |
GAGGGGCATCAGTGTGCTGA+AGG | 0.535914 | 8_1:+11802821 | Msa1178920:CDS |
ATCCACCTGGCATTAGAGTC+CGG | 0.536092 | 8_1:+11804366 | Msa1178920:CDS |
AGTGTGCTGAAGGATTGTTT+AGG | 0.539602 | 8_1:+11802831 | Msa1178920:CDS |
AGTCCACCGGTAACAATCCC+GGG | 0.539777 | 8_1:-11802788 | None:intergenic |
CAAAGGTAACTTGATTCTAT+CGG | 0.540277 | 8_1:-11807702 | None:intergenic |
TTATGAAGATGACTCGCACT+TGG | 0.542374 | 8_1:+11805378 | Msa1178920:CDS |
TCTTCTTCGGATCAAAGCCA+TGG | 0.542681 | 8_1:-11802411 | None:intergenic |
GTCAATGATACCAAAGGGAG+GGG | 0.543790 | 8_1:+11805412 | Msa1178920:CDS |
AGGGTTGCAGCAGGAGCCAA+AGG | 0.547037 | 8_1:+11807632 | Msa1178920:CDS |
GATACATGTGTGCTAAAGGT+TGG | 0.548162 | 8_1:+11807456 | Msa1178920:CDS |
GGAATGTAACACTCGGCAAA+GGG | 0.548493 | 8_1:-11807329 | None:intergenic |
AAAGGGTCAGAACCAGAAAA+GGG | 0.549984 | 8_1:+11802434 | Msa1178920:CDS |
CTCCCAAAGTTCAAGTCCAC+CGG | 0.550193 | 8_1:-11802801 | None:intergenic |
GTTGCATTTGTACTTTATGG+TGG | 0.551687 | 8_1:+11802624 | Msa1178920:CDS |
AGGAATGTAACACTCGGCAA+AGG | 0.554566 | 8_1:-11807330 | None:intergenic |
GAATCAAGTTACCTTTGTGA+GGG | 0.557059 | 8_1:+11807708 | Msa1178920:CDS |
CTCATGGTTTCCACTAATGG+TGG | 0.558410 | 8_1:+11804676 | Msa1178920:CDS |
GATGTTATGAGGGTTGCAGC+AGG | 0.559067 | 8_1:+11807623 | Msa1178920:CDS |
CGCAGGATACTTTGTTTGGG+CGG | 0.559130 | 8_1:+11804424 | Msa1178920:CDS |
GGTCCTATGCCTGATCCACC+TGG | 0.559473 | 8_1:+11802713 | Msa1178920:CDS |
ACTAACTTTGTCACCACCAT+CGG | 0.561747 | 8_1:-11807372 | None:intergenic |
CTTTGATCCGAAGAAGAAAA+GGG | 0.562783 | 8_1:+11802417 | Msa1178920:CDS |
GCACCAGCTCCAATGGGTGG+TGG | 0.563844 | 8_1:+11804769 | Msa1178920:CDS |
CGTTACTGGATGGTTCCAAA+AGG | 0.564207 | 8_1:+11807746 | Msa1178920:three_prime_UTR |
AACAATGTCAATGATACCAA+AGG | 0.566328 | 8_1:+11805406 | Msa1178920:CDS |
TACCATGATATGGGAGTCGA+GGG | 0.566549 | 8_1:+11806046 | Msa1178920:CDS |
TTCTTCAATTTCAAACCAGG+TGG | 0.569825 | 8_1:-11802728 | None:intergenic |
ATTGCTAACTTGGCACGCAT+CGG | 0.570105 | 8_1:+11804452 | Msa1178920:CDS |
ACAATGTCAATGATACCAAA+GGG | 0.570573 | 8_1:+11805407 | Msa1178920:CDS |
GCAGCTACAAGTCCTGAGAC+AGG | 0.571268 | 8_1:-11804389 | None:intergenic |
TGGACTGAATACCATGATAT+GGG | 0.579168 | 8_1:+11806037 | Msa1178920:CDS |
CCTCGACAATGAAACAGGAA+TGG | 0.579478 | 8_1:+11804343 | Msa1178920:CDS |
TATGAAGATGACTCGCACTT+GGG | 0.579656 | 8_1:+11805379 | Msa1178920:CDS |
GCTGCTGACTACTTTGCCGC+AGG | 0.579775 | 8_1:+11804407 | Msa1178920:CDS |
ACATACTGAGGAAATGAAGC+TGG | 0.579803 | 8_1:-11802674 | None:intergenic |
GTGTTACAGACCTTCATGCT+GGG | 0.580352 | 8_1:+11804307 | Msa1178920:intron |
CCCGAGACATTGCTGTTGCA+AGG | 0.580720 | 8_1:+11804896 | Msa1178920:CDS |
ACATAAGTGCGGATCCCTGA+AGG | 0.582865 | 8_1:-11807500 | None:intergenic |
AGAATCAAGTTACCTTTGTG+AGG | 0.584227 | 8_1:+11807707 | Msa1178920:CDS |
AAACAAGATTCAATCCTTCA+GGG | 0.585693 | 8_1:+11807486 | Msa1178920:CDS |
ACAGGCCGGACTCTAATGCC+AGG | 0.586620 | 8_1:-11804371 | None:intergenic |
GTTGATTGAAGATGTTATGA+GGG | 0.588594 | 8_1:+11807613 | Msa1178920:CDS |
GTTGAAGCACCAGCTCCAAT+GGG | 0.588758 | 8_1:+11804763 | Msa1178920:CDS |
ATACCTCTTGTCGTGATGTG+TGG | 0.589412 | 8_1:+11806017 | Msa1178920:CDS |
CTACAAGTCCTGAGACAGGC+CGG | 0.589884 | 8_1:-11804385 | None:intergenic |
AAACCAGGTGGATCAGGCAT+AGG | 0.590698 | 8_1:-11802716 | None:intergenic |
GAACCATCCAGTAACGGGAG+AGG | 0.591346 | 8_1:-11807739 | None:intergenic |
AAAGTTAGTTGTCTGAAAGA+TGG | 0.594243 | 8_1:+11807386 | Msa1178920:CDS |
TTATTATTCCACATTCGATG+GGG | 0.597825 | 8_1:+11804710 | Msa1178920:CDS |
TTCTTACCGGTACTATCGAG+AGG | 0.598025 | 8_1:+11807824 | Msa1178920:three_prime_UTR |
CACTAATGGTGGAAATAAGG+CGG | 0.599508 | 8_1:+11804687 | Msa1178920:CDS |
GAAATTGATCCTAATGCCGA+TGG | 0.600115 | 8_1:+11807356 | Msa1178920:CDS |
AGTCCACACATCACGACAAG+AGG | 0.600708 | 8_1:-11806020 | None:intergenic |
GCCAACCTGCTAGAAGGTAG+AGG | 0.602621 | 8_1:+11807548 | Msa1178920:CDS |
ATGTGCTCCACCCAGCATGA+AGG | 0.609066 | 8_1:-11804317 | None:intergenic |
TGTCAATGATACCAAAGGGA+GGG | 0.611058 | 8_1:+11805411 | Msa1178920:CDS |
CAAATTCAGATTCCAGTGAG+TGG | 0.611840 | 8_1:+11807997 | Msa1178920:three_prime_UTR |
TTTAGGAAGAGATTGTGGGG+TGG | 0.612276 | 8_1:+11802848 | Msa1178920:CDS |
TTCAAAAGGAATGTAACACT+CGG | 0.613347 | 8_1:-11807336 | None:intergenic |
AAGGCAATTGTAAACATCGG+TGG | 0.613847 | 8_1:+11804823 | Msa1178920:CDS |
CGGCCTTGATTGGTCACCAG+AGG | 0.614675 | 8_1:+11805448 | Msa1178920:CDS |
GTGGTGGAGGAGGACCAGAT+TGG | 0.615784 | 8_1:+11804785 | Msa1178920:CDS |
TATTATTCCACATTCGATGG+GGG | 0.616054 | 8_1:+11804711 | Msa1178920:CDS |
ATTAAGGCAATTGTAAACAT+CGG | 0.616704 | 8_1:+11804820 | Msa1178920:CDS |
AATCAAGTTACCTTTGTGAG+GGG | 0.617198 | 8_1:+11807709 | Msa1178920:exon |
GGTGGACTTGAACTTTGGGA+GGG | 0.617610 | 8_1:+11802803 | Msa1178920:CDS |
ATACCATGATATGGGAGTCG+AGG | 0.618174 | 8_1:+11806045 | Msa1178920:CDS |
TGCGGGATCAAACACTAAGT+CGG | 0.618626 | 8_1:+11804635 | Msa1178920:CDS |
GAGTGGCGAAACAGGAAGCA+AGG | 0.618828 | 8_1:+11808014 | Msa1178920:three_prime_UTR |
TCCTGAACTTAGAACTGGAA+CGG | 0.619565 | 8_1:-11807435 | None:intergenic |
CCTTTAGAGAAATGAAAGAG+TGG | 0.625888 | 8_1:-11807883 | None:intergenic |
TTGTTTAGGAAGAGATTGTG+GGG | 0.629813 | 8_1:+11802845 | Msa1178920:CDS |
ATGTGTGCTAAAGGTTGGCG+CGG | 0.634152 | 8_1:+11807461 | Msa1178920:CDS |
GTGGATCCTCTCGATAGTAC+CGG | 0.638930 | 8_1:-11807830 | None:intergenic |
GTGGACTTGAACTTTGGGAG+GGG | 0.645485 | 8_1:+11802804 | Msa1178920:CDS |
CTTGAGTGTCAAGCATCCAG+TGG | 0.649701 | 8_1:+11802757 | Msa1178920:CDS |
GAAGCACCAGCTCCAATGGG+TGG | 0.650096 | 8_1:+11804766 | Msa1178920:CDS |
CCTTCTAGCAGGTTGGCTGG+AGG | 0.650840 | 8_1:-11807542 | None:intergenic |
CGCCCAAACAAAGTATCCTG+CGG | 0.650887 | 8_1:-11804423 | None:intergenic |
GTGTTCCAAAGGCTATAGCA+GGG | 0.651360 | 8_1:+11804857 | Msa1178920:CDS |
TTTGAGAGAAGAAATTGATG+GGG | 0.652309 | 8_1:-11802307 | None:intergenic |
GAAACAGGAATGGATCCACC+TGG | 0.653090 | 8_1:+11804353 | Msa1178920:CDS |
TTACAGACCTTCATGCTGGG+TGG | 0.657680 | 8_1:+11804310 | Msa1178920:intron |
AGAGAAGATTTCCATATCAG+GGG | 0.659632 | 8_1:-11807255 | None:intergenic |
GGATGGTTCCAAAAGGAGAG+AGG | 0.665716 | 8_1:+11807753 | Msa1178920:three_prime_UTR |
AGGAATCCAACCCCTCACAA+AGG | 0.672701 | 8_1:-11807719 | None:intergenic |
ATGTCAATGATACCAAAGGG+AGG | 0.678379 | 8_1:+11805410 | Msa1178920:CDS |
GCCAAAGGAGAAGAATTGGG+AGG | 0.678687 | 8_1:+11807647 | Msa1178920:CDS |
GTTCCCGGGATTGTTACCGG+TGG | 0.680821 | 8_1:+11802785 | Msa1178920:CDS |
ATAGCCTCAGTGACATACTG+AGG | 0.682133 | 8_1:-11802686 | None:intergenic |
TGGTCACCAGAGGAAAGCTG+TGG | 0.687949 | 8_1:+11805458 | Msa1178920:CDS |
TCACAAGGGCGATTGCACCA+GGG | 0.688041 | 8_1:+11805312 | Msa1178920:intron |
CATATTCTCGAACATAAGTG+CGG | 0.688532 | 8_1:-11807511 | None:intergenic |
CATGTTGCAATGTTTGAATG+CGG | 0.688558 | 8_1:-11805355 | None:intergenic |
GAAGGTAGAGGAACACAAAG+CGG | 0.691848 | 8_1:+11807560 | Msa1178920:CDS |
TTAAGAAGAAGAGTACTAGG+TGG | 0.695244 | 8_1:+11802570 | Msa1178920:CDS |
GGCCGGACTCTAATGCCAGG+TGG | 0.698938 | 8_1:-11804368 | None:intergenic |
ATTGATCCTAATGCCGATGG+TGG | 0.700702 | 8_1:+11807359 | Msa1178920:CDS |
ATTCTGCTTTACTCGCAAAG+GGG | 0.702110 | 8_1:-11807854 | None:intergenic |
ATTTCCTCAGTATGTCACTG+AGG | 0.706751 | 8_1:+11802682 | Msa1178920:CDS |
GCTCCGAAAATGATGGCGCG+TGG | 0.724137 | 8_1:+11806136 | Msa1178920:CDS |
AATATCATTTCAGAACACTG+AGG | 0.773968 | 8_1:+11804517 | Msa1178920:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATATAATAATAATATTTAT+TGG | - | chr8_1:11807788-11807807 | None:intergenic | 0.0% |
!! | CAAAATCAATTATTAAAATA+AGG | - | chr8_1:11804546-11804565 | None:intergenic | 10.0% |
!!! | TACTAGTATTTAATTTTAAA+TGG | + | chr8_1:11806641-11806660 | Msa1178920:intron | 10.0% |
!!! | ACTAGTATTTAATTTTAAAT+GGG | + | chr8_1:11806642-11806661 | Msa1178920:intron | 10.0% |
!! | ATTCATAATGATTATTTATT+TGG | - | chr8_1:11807067-11807086 | None:intergenic | 10.0% |
!!! | AATAGTATTTTTATTTTTCT+TGG | - | chr8_1:11807153-11807172 | None:intergenic | 10.0% |
!!! | TTTTGCTTTTTATTATTTTT+TGG | + | chr8_1:11808131-11808150 | Msa1178920:three_prime_UTR | 10.0% |
!!! | AAAACAACTTTTTTTTTTCT+GGG | - | chr8_1:11802341-11802360 | None:intergenic | 15.0% |
!!! | AAAAACAACTTTTTTTTTTC+TGG | - | chr8_1:11802342-11802361 | None:intergenic | 15.0% |
!!! | CATTTTATTTGATTTGATTA+TGG | + | chr8_1:11803132-11803151 | Msa1178920:intron | 15.0% |
!! | TATATATTTATAACTTTGCT+TGG | + | chr8_1:11803404-11803423 | Msa1178920:intron | 15.0% |
!!! | TGTTAATATGTTTCTATTAT+TGG | + | chr8_1:11803664-11803683 | Msa1178920:intron | 15.0% |
!! | TAATAATAACTTAATTGATC+AGG | + | chr8_1:11804612-11804631 | Msa1178920:intron | 15.0% |
!! | AATAAAACAAATGTTAACTA+TGG | + | chr8_1:11805536-11805555 | Msa1178920:CDS | 15.0% |
!! | CAAAACTTAAAATTGATATA+GGG | + | chr8_1:11805634-11805653 | Msa1178920:intron | 15.0% |
!! | TGTTTGAATTAACTTATTTA+AGG | + | chr8_1:11805659-11805678 | Msa1178920:intron | 15.0% |
!! | AAATAAAAATACTATTCAGT+TGG | + | chr8_1:11807157-11807176 | Msa1178920:intron | 15.0% |
!! | TTGAATAGGTAATAAAAATA+AGG | - | chr8_1:11807185-11807204 | None:intergenic | 15.0% |
!!! | ATATTTTATAAGATTGAATG+GGG | - | chr8_1:11808226-11808245 | None:intergenic | 15.0% |
!!! | GATATTTTATAAGATTGAAT+GGG | - | chr8_1:11808227-11808246 | None:intergenic | 15.0% |
!!! | TGATATTTTATAAGATTGAA+TGG | - | chr8_1:11808228-11808247 | None:intergenic | 15.0% |
!!! | TCTTCTTTTTTCTGAATTTT+TGG | - | chr8_1:11802479-11802498 | None:intergenic | 20.0% |
!!! | TTATTTGATTTGATTATGGT+TGG | + | chr8_1:11803136-11803155 | Msa1178920:intron | 20.0% |
!!! | AGAAAGTTTGTTCTTATAAA+AGG | + | chr8_1:11803361-11803380 | Msa1178920:intron | 20.0% |
!! | TATATGTTTGACATTTGATT+TGG | + | chr8_1:11803584-11803603 | Msa1178920:intron | 20.0% |
!!! | TCATTTATTTTGTCTGTTAT+TGG | + | chr8_1:11803796-11803815 | Msa1178920:intron | 20.0% |
!!! | ATTTTCTTCATTTCATGAAA+TGG | + | chr8_1:11804740-11804759 | Msa1178920:CDS | 20.0% |
!!! | TTTTCTTCATTTCATGAAAT+GGG | + | chr8_1:11804741-11804760 | Msa1178920:CDS | 20.0% |
!! | TACAATTGCCTTAATATATT+TGG | - | chr8_1:11804815-11804834 | None:intergenic | 20.0% |
!! | TTCATAGTTTAAACAATAGA+CGG | - | chr8_1:11805045-11805064 | None:intergenic | 20.0% |
!! | TAACATTCTCAAATTATTAC+CGG | - | chr8_1:11805083-11805102 | None:intergenic | 20.0% |
!! | TTCAGTATCTAAATTGAATT+TGG | + | chr8_1:11805272-11805291 | Msa1178920:intron | 20.0% |
!! | GCAAAACTTAAAATTGATAT+AGG | + | chr8_1:11805633-11805652 | Msa1178920:intron | 20.0% |
!! | TATTTGTAGTGTTCATATTT+AGG | - | chr8_1:11806205-11806224 | None:intergenic | 20.0% |
!! | AATATGAACACTACAAATAT+TGG | + | chr8_1:11806206-11806225 | Msa1178920:CDS | 20.0% |
!! | AAATTTCTGAATGAATTCTT+CGG | + | chr8_1:11806316-11806335 | Msa1178920:intron | 20.0% |
!! | TTAATTAAGCACTTATAACT+TGG | + | chr8_1:11806445-11806464 | Msa1178920:intron | 20.0% |
!!! | TATTTTAACAACTTCAGATA+TGG | + | chr8_1:11806850-11806869 | Msa1178920:intron | 20.0% |
!!! | ATCTGTCTAAAGTTAAATAA+CGG | + | chr8_1:11806900-11806919 | Msa1178920:intron | 20.0% |
!! | CTTATAAATATAAGCTCTTT+CGG | - | chr8_1:11807303-11807322 | None:intergenic | 20.0% |
!! | TGTATTCTGATATCTTTAAA+TGG | + | chr8_1:11807678-11807697 | Msa1178920:CDS | 20.0% |
!!! | AAAACATTAGATTTGTTGTA+TGG | + | chr8_1:11808044-11808063 | Msa1178920:three_prime_UTR | 20.0% |
!!! | TTTGTTGTATGGTAATTTTT+TGG | + | chr8_1:11808055-11808074 | Msa1178920:three_prime_UTR | 20.0% |
!!! | AGCTATGATTATTTTTGTGA+AGG | - | chr8_1:11802059-11802078 | None:intergenic | 25.0% |
! | AATTTAAGCGAAAATGAAGA+AGG | - | chr8_1:11802261-11802280 | None:intergenic | 25.0% |
!!! | TTTTGAGAGAAGAAATTGAT+GGG | - | chr8_1:11802311-11802330 | None:intergenic | 25.0% |
!!! | TTTTTGAGAGAAGAAATTGA+TGG | - | chr8_1:11802312-11802331 | None:intergenic | 25.0% |
!!! | TTATTTTTCTCAACAAACTC+TGG | + | chr8_1:11802368-11802387 | Msa1178920:five_prime_UTR | 25.0% |
!! | TATTTTTCTCAACAAACTCT+GGG | + | chr8_1:11802369-11802388 | Msa1178920:five_prime_UTR | 25.0% |
! | AAAGAACAAGAAGAAAAACA+AGG | + | chr8_1:11802532-11802551 | Msa1178920:CDS | 25.0% |
!!! | TTTTTAAGAAGAAGAGTACT+AGG | + | chr8_1:11802567-11802586 | Msa1178920:CDS | 25.0% |
!!! | CTTTTGGAGAAGTTTATAAA+AGG | + | chr8_1:11802873-11802892 | Msa1178920:CDS | 25.0% |
!! | TTGTTTGTCTTAATTTGATG+AGG | + | chr8_1:11802951-11802970 | Msa1178920:intron | 25.0% |
!! | TGTTAGCATGTTTCTATAAT+TGG | + | chr8_1:11803205-11803224 | Msa1178920:intron | 25.0% |
!!! | TGTGTTTTTATAGTCTTGTT+TGG | + | chr8_1:11803467-11803486 | Msa1178920:intron | 25.0% |
!!! | TTGACATTTGATTTGGTTAT+TGG | + | chr8_1:11803591-11803610 | Msa1178920:intron | 25.0% |
! | TAAATGAAGATCAGAATCAA+AGG | - | chr8_1:11803895-11803914 | None:intergenic | 25.0% |
! | TTTGATTCTGATCTTCATTT+AGG | + | chr8_1:11803894-11803913 | Msa1178920:intron | 25.0% |
! | ACTGTTCAATTTGAAAGTAA+AGG | + | chr8_1:11804050-11804069 | Msa1178920:intron | 25.0% |
! | CTGTTCAATTTGAAAGTAAA+GGG | + | chr8_1:11804051-11804070 | Msa1178920:intron | 25.0% |
! | TGAAGAAAAAACTATGTACA+TGG | + | chr8_1:11804478-11804497 | Msa1178920:CDS | 25.0% |
!!! | AGTGTTCTGAAATAAAAACT+CGG | - | chr8_1:11804571-11804590 | None:intergenic | 25.0% |
!! | TTGGTGTTCCAAATATATTA+AGG | + | chr8_1:11804804-11804823 | Msa1178920:CDS | 25.0% |
! | ATTAAGGCAATTGTAAACAT+CGG | + | chr8_1:11804820-11804839 | Msa1178920:CDS | 25.0% |
! | AATTTGTGTTTCCAATTCAA+AGG | - | chr8_1:11805204-11805223 | None:intergenic | 25.0% |
! | TTTCGTGTTATATATCACAA+GGG | + | chr8_1:11805298-11805317 | Msa1178920:intron | 25.0% |
! | ACAAGAAAACTGGTAAAATA+AGG | - | chr8_1:11805928-11805947 | None:intergenic | 25.0% |
!! | TGATTTTGAACTCACAAATA+TGG | - | chr8_1:11806381-11806400 | None:intergenic | 25.0% |
!! | AACTGTTTTATAAGCTATAC+TGG | + | chr8_1:11806554-11806573 | Msa1178920:intron | 25.0% |
! | ATCCAAACAGATAATTTCTT+TGG | + | chr8_1:11806668-11806687 | Msa1178920:intron | 25.0% |
! | ATCCAAAGAAATTATCTGTT+TGG | - | chr8_1:11806673-11806692 | None:intergenic | 25.0% |
! | AACAGATAATTTCTTTGGAT+TGG | + | chr8_1:11806673-11806692 | Msa1178920:intron | 25.0% |
! | TTTGACAGAAATTATGACTT+TGG | + | chr8_1:11806748-11806767 | Msa1178920:intron | 25.0% |
! | ATCCAAACTGTATGTTTATA+TGG | - | chr8_1:11806777-11806796 | None:intergenic | 25.0% |
! | CTAAATTTCATCATGAATGA+TGG | - | chr8_1:11806988-11807007 | None:intergenic | 25.0% |
! | AAGACATCAATCAATTGAAT+AGG | - | chr8_1:11807199-11807218 | None:intergenic | 25.0% |
! | TTTGCGATTTGAAATTAGGA+AGG | - | chr8_1:11802164-11802183 | None:intergenic | 30.0% |
TATTCGCAAATTGCAGTATA+CGG | - | chr8_1:11802225-11802244 | None:intergenic | 30.0% | |
TTTGAGAGAAGAAATTGATG+GGG | - | chr8_1:11802310-11802329 | None:intergenic | 30.0% | |
!!! | TGAATCGATTTTTTGAACCA+TGG | + | chr8_1:11802394-11802413 | Msa1178920:exon | 30.0% |
TTGGTTGCATTTGTACTTTA+TGG | + | chr8_1:11802621-11802640 | Msa1178920:CDS | 30.0% | |
TCTTTCTTCAATTTCAAACC+AGG | - | chr8_1:11802734-11802753 | None:intergenic | 30.0% | |
! | GGTTTGAAATTGAAGAAAGA+AGG | + | chr8_1:11802734-11802753 | Msa1178920:CDS | 30.0% |
ATTGTTTAGGAAGAGATTGT+GGG | + | chr8_1:11802844-11802863 | Msa1178920:CDS | 30.0% | |
! | TGTGTATTTATAGCTTTGCT+TGG | + | chr8_1:11802916-11802935 | Msa1178920:intron | 30.0% |
! | TCTTAATTTGATGAGGTTGA+TGG | + | chr8_1:11802958-11802977 | Msa1178920:intron | 30.0% |
!! | GGTGTTTTTATTGTCTTGTT+TGG | + | chr8_1:11802979-11802998 | Msa1178920:intron | 30.0% |
! | TCTTGTTTGGTATTGTTTAG+TGG | + | chr8_1:11802992-11803011 | Msa1178920:intron | 30.0% |
! | TGGTATTGTTTAGTGGTTTT+TGG | + | chr8_1:11802999-11803018 | Msa1178920:intron | 30.0% |
!!! | TGTTTAGTGGTTTTTGGTAT+TGG | + | chr8_1:11803005-11803024 | Msa1178920:intron | 30.0% |
! | TGCTGTGATTTGAAATTGAA+TGG | + | chr8_1:11803046-11803065 | Msa1178920:intron | 30.0% |
GAAATTGAATGGTTATGATG+AGG | + | chr8_1:11803057-11803076 | Msa1178920:intron | 30.0% | |
!! | TTTGATTTGATTATGGTTGG+TGG | + | chr8_1:11803139-11803158 | Msa1178920:intron | 30.0% |
! | TTGATTTGATTATGGTTGGT+GGG | + | chr8_1:11803140-11803159 | Msa1178920:intron | 30.0% |
! | TAGCATGTTTCTATAATTGG+TGG | + | chr8_1:11803208-11803227 | Msa1178920:intron | 30.0% |
! | GGAAAGGAACTTATGTTTTA+TGG | + | chr8_1:11803247-11803266 | Msa1178920:intron | 30.0% |
!!! | TCTTGTTTGGTTTTGTTTAG+TGG | + | chr8_1:11803480-11803499 | Msa1178920:intron | 30.0% |
! | TTTGTGAGTGTGTTGTTATT+TGG | + | chr8_1:11803503-11803522 | Msa1178920:intron | 30.0% |
GGAATTGATTGATTATGATG+AGG | + | chr8_1:11803524-11803543 | Msa1178920:intron | 30.0% | |
TTGATTGATTATGATGAGGA+TGG | + | chr8_1:11803528-11803547 | Msa1178920:intron | 30.0% | |
!! | CATTTGATTTGGTTATTGGT+TGG | + | chr8_1:11803595-11803614 | Msa1178920:intron | 30.0% |
TCTATTATTGGTGAAGACAT+TGG | + | chr8_1:11803676-11803695 | Msa1178920:intron | 30.0% | |
GATAATGTGATTGCTTGATA+TGG | + | chr8_1:11803744-11803763 | Msa1178920:intron | 30.0% | |
! | AATTTTTGCTCTTTGCTACT+TGG | + | chr8_1:11803769-11803788 | Msa1178920:intron | 30.0% |
! | GTCTGTTATTGGATTTTACT+TGG | + | chr8_1:11803807-11803826 | Msa1178920:intron | 30.0% |
TTACTTGGAATAAGAAAGCT+TGG | + | chr8_1:11803822-11803841 | Msa1178920:intron | 30.0% | |
GATCAGAATCAAAGGTTTAA+AGG | - | chr8_1:11803887-11803906 | None:intergenic | 30.0% | |
ATTGTGAGTACTTGATTGAT+TGG | + | chr8_1:11803984-11804003 | Msa1178920:intron | 30.0% | |
CAGATATTATTTGTCTCACA+AGG | - | chr8_1:11804106-11804125 | None:intergenic | 30.0% | |
AATATCATTTCAGAACACTG+AGG | + | chr8_1:11804517-11804536 | Msa1178920:CDS | 30.0% | |
ATAACTTAATTGATCAGGTG+CGG | + | chr8_1:11804617-11804636 | Msa1178920:intron | 30.0% | |
AAAAAGCAACATAGAACTCA+TGG | + | chr8_1:11804660-11804679 | Msa1178920:CDS | 30.0% | |
GTTATTATTCCACATTCGAT+GGG | + | chr8_1:11804709-11804728 | Msa1178920:CDS | 30.0% | |
TTATTATTCCACATTCGATG+GGG | + | chr8_1:11804710-11804729 | Msa1178920:CDS | 30.0% | |
! | ATATATTTGGAACACCAATC+TGG | - | chr8_1:11804802-11804821 | None:intergenic | 30.0% |
TGCAAGGTATATCTTCTTTA+TGG | + | chr8_1:11804912-11804931 | Msa1178920:intron | 30.0% | |
ACACAAATTCTCATTGCATT+TGG | + | chr8_1:11805215-11805234 | Msa1178920:intron | 30.0% | |
CTTTCGTGTTATATATCACA+AGG | + | chr8_1:11805297-11805316 | Msa1178920:intron | 30.0% | |
ATATCGTTATCTAAAAACCC+TGG | - | chr8_1:11805332-11805351 | None:intergenic | 30.0% | |
AACAATGTCAATGATACCAA+AGG | + | chr8_1:11805406-11805425 | Msa1178920:CDS | 30.0% | |
ACAATGTCAATGATACCAAA+GGG | + | chr8_1:11805407-11805426 | Msa1178920:CDS | 30.0% | |
TATGGAAGAATGATATCGTT+TGG | + | chr8_1:11805554-11805573 | Msa1178920:CDS | 30.0% | |
!! | AGATCGATATTGTTGACTTT+CGG | + | chr8_1:11805606-11805625 | Msa1178920:intron | 30.0% |
! | ACTTATTTAAGGTCATCTAC+CGG | + | chr8_1:11805670-11805689 | Msa1178920:intron | 30.0% |
AATTAAGCTGTTTATCCAAC+AGG | + | chr8_1:11805876-11805895 | Msa1178920:intron | 30.0% | |
ATTAAGCTGTTTATCCAACA+GGG | + | chr8_1:11805877-11805896 | Msa1178920:intron | 30.0% | |
CACCATATAAACATACAGTT+TGG | + | chr8_1:11806772-11806791 | Msa1178920:intron | 30.0% | |
! | ATCATTATTTTCTCTCACCT+CGG | + | chr8_1:11806802-11806821 | Msa1178920:intron | 30.0% |
!! | GTAGACTAAACTTATTTCTG+AGG | - | chr8_1:11806950-11806969 | None:intergenic | 30.0% |
! | TATTTGGAACATATCAAGAG+CGG | - | chr8_1:11807051-11807070 | None:intergenic | 30.0% |
CAACTGTTAATAATATCGAC+AGG | + | chr8_1:11807222-11807241 | Msa1178920:intron | 30.0% | |
ATGGAAATCTTCTCTCTATA+TGG | + | chr8_1:11807263-11807282 | Msa1178920:CDS | 30.0% | |
TAAATATAAGCTCTTTCGGT+TGG | - | chr8_1:11807299-11807318 | None:intergenic | 30.0% | |
TTCAAAAGGAATGTAACACT+CGG | - | chr8_1:11807339-11807358 | None:intergenic | 30.0% | |
GCATTAGGATCAATTTCAAA+AGG | - | chr8_1:11807353-11807372 | None:intergenic | 30.0% | |
AAAGTTAGTTGTCTGAAAGA+TGG | + | chr8_1:11807386-11807405 | Msa1178920:CDS | 30.0% | |
AAAACAAGATTCAATCCTTC+AGG | + | chr8_1:11807485-11807504 | Msa1178920:CDS | 30.0% | |
AAACAAGATTCAATCCTTCA+GGG | + | chr8_1:11807486-11807505 | Msa1178920:CDS | 30.0% | |
GTTGATTGAAGATGTTATGA+GGG | + | chr8_1:11807613-11807632 | Msa1178920:CDS | 30.0% | |
CAAAGGTAACTTGATTCTAT+CGG | - | chr8_1:11807705-11807724 | None:intergenic | 30.0% | |
! | TGTGTCTATTTCTTTCTTAC+CGG | + | chr8_1:11807811-11807830 | Msa1178920:three_prime_UTR | 30.0% |
! | GCGATTTGCGATTTGAAATT+AGG | - | chr8_1:11802168-11802187 | None:intergenic | 35.0% |
CTTTGATCCGAAGAAGAAAA+GGG | + | chr8_1:11802417-11802436 | Msa1178920:CDS | 35.0% | |
!! | TTAAGAAGAAGAGTACTAGG+TGG | + | chr8_1:11802570-11802589 | Msa1178920:CDS | 35.0% |
GTTGCATTTGTACTTTATGG+TGG | + | chr8_1:11802624-11802643 | Msa1178920:CDS | 35.0% | |
TTCTTCAATTTCAAACCAGG+TGG | - | chr8_1:11802731-11802750 | None:intergenic | 35.0% | |
GATTGTTTAGGAAGAGATTG+TGG | + | chr8_1:11802843-11802862 | Msa1178920:CDS | 35.0% | |
TTGTTTAGGAAGAGATTGTG+GGG | + | chr8_1:11802845-11802864 | Msa1178920:CDS | 35.0% | |
TTGAATGGTTATGATGAGGA+TGG | + | chr8_1:11803061-11803080 | Msa1178920:intron | 35.0% | |
AGACACTGGTAAATTTGGAA+AGG | + | chr8_1:11803231-11803250 | Msa1178920:intron | 35.0% | |
! | TATGGTATTGTTGCTTGAGA+TGG | + | chr8_1:11803265-11803284 | Msa1178920:intron | 35.0% |
GATGGTTAATTCTTGCTCTT+TGG | + | chr8_1:11803283-11803302 | Msa1178920:intron | 35.0% | |
ATAACTTTGCTTGGTTGTGT+TGG | + | chr8_1:11803413-11803432 | Msa1178920:intron | 35.0% | |
ATTATGATGAGGATGGTGAT+TGG | + | chr8_1:11803535-11803554 | Msa1178920:intron | 35.0% | |
!! | ACACTTGTCGATTTAATGCT+AGG | + | chr8_1:11803631-11803650 | Msa1178920:intron | 35.0% |
TCGATTTAATGCTAGGTTGT+TGG | + | chr8_1:11803638-11803657 | Msa1178920:intron | 35.0% | |
TTATTGGTGAAGACATTGGA+AGG | + | chr8_1:11803680-11803699 | Msa1178920:intron | 35.0% | |
AAGACATTGGAAGGATGATT+TGG | + | chr8_1:11803689-11803708 | Msa1178920:intron | 35.0% | |
! | ATTGGAAGGATGATTTGGAA+GGG | + | chr8_1:11803694-11803713 | Msa1178920:intron | 35.0% |
ACAGTGATCTAACATTACAC+AGG | - | chr8_1:11803861-11803880 | None:intergenic | 35.0% | |
CCTTATCTGGACAATCAATT+AGG | - | chr8_1:11804171-11804190 | None:intergenic | 35.0% | |
CCTAATTGATTGTCCAGATA+AGG | + | chr8_1:11804168-11804187 | Msa1178920:intron | 35.0% | |
! | ACTGTGTTATAAGCCTTATC+TGG | - | chr8_1:11804184-11804203 | None:intergenic | 35.0% |
GACAAATATTGCACTAGTGA+TGG | - | chr8_1:11804210-11804229 | None:intergenic | 35.0% | |
ACCATTTCTACGTCTATGAT+GGG | - | chr8_1:11804260-11804279 | None:intergenic | 35.0% | |
TACCATTTCTACGTCTATGA+TGG | - | chr8_1:11804261-11804280 | None:intergenic | 35.0% | |
GGTCTGTAACACACAAAAAT+AGG | - | chr8_1:11804299-11804318 | None:intergenic | 35.0% | |
TAACTTAATTGATCAGGTGC+GGG | + | chr8_1:11804618-11804637 | Msa1178920:intron | 35.0% | |
! | TTCCACTAATGGTGGAAATA+AGG | + | chr8_1:11804684-11804703 | Msa1178920:CDS | 35.0% |
GGTTATTATTCCACATTCGA+TGG | + | chr8_1:11804708-11804727 | Msa1178920:CDS | 35.0% | |
TATTATTCCACATTCGATGG+GGG | + | chr8_1:11804711-11804730 | Msa1178920:CDS | 35.0% | |
!!! | ACCATTTTTAGGTGTTCCAA+AGG | + | chr8_1:11804846-11804865 | Msa1178920:CDS | 35.0% |
ATGTAACCTAGTAACTAGCA+TGG | - | chr8_1:11804938-11804957 | None:intergenic | 35.0% | |
!! | AGGTTACATGTTGACTTGTA+TGG | + | chr8_1:11804949-11804968 | Msa1178920:intron | 35.0% |
!! | GGTTACATGTTGACTTGTAT+GGG | + | chr8_1:11804950-11804969 | Msa1178920:intron | 35.0% |
GAGTATAATACTGTTGAACC+AGG | - | chr8_1:11804981-11805000 | None:intergenic | 35.0% | |
AAGATCTCTCTCCTTTGAAT+TGG | + | chr8_1:11805190-11805209 | Msa1178920:intron | 35.0% | |
CATGTTGCAATGTTTGAATG+CGG | - | chr8_1:11805358-11805377 | None:intergenic | 35.0% | |
!! | GATCGATATTGTTGACTTTC+GGG | + | chr8_1:11805607-11805626 | Msa1178920:intron | 35.0% |
ATGAGACAGAACAAGAAAAC+TGG | - | chr8_1:11805938-11805957 | None:intergenic | 35.0% | |
! | ACACTCAGGTTTTTGTTAAC+AGG | + | chr8_1:11805967-11805986 | Msa1178920:intron | 35.0% |
! | CACTCAGGTTTTTGTTAACA+GGG | + | chr8_1:11805968-11805987 | Msa1178920:intron | 35.0% |
TTGTTAACAGGGTGCAATTA+AGG | + | chr8_1:11805979-11805998 | Msa1178920:intron | 35.0% | |
TGTTAACAGGGTGCAATTAA+GGG | + | chr8_1:11805980-11805999 | Msa1178920:intron | 35.0% | |
!! | CAAGAGGTATTTGCAACATT+GGG | - | chr8_1:11806007-11806026 | None:intergenic | 35.0% |
!! | ACAAGAGGTATTTGCAACAT+TGG | - | chr8_1:11806008-11806027 | None:intergenic | 35.0% |
TGGACTGAATACCATGATAT+GGG | + | chr8_1:11806037-11806056 | Msa1178920:CDS | 35.0% | |
GAACATAAAGTTTACACAGC+TGG | + | chr8_1:11806085-11806104 | Msa1178920:CDS | 35.0% | |
GGTAGTGATCATTTCTCTTA+TGG | + | chr8_1:11806157-11806176 | Msa1178920:CDS | 35.0% | |
CAAATATTGGTCAAACCCAT+TGG | + | chr8_1:11806219-11806238 | Msa1178920:CDS | 35.0% | |
AATCTCACTTTGTCTCCAAT+GGG | - | chr8_1:11806237-11806256 | None:intergenic | 35.0% | |
AAATCTCACTTTGTCTCCAA+TGG | - | chr8_1:11806238-11806257 | None:intergenic | 35.0% | |
TTTCTGAATGAATTCTTCGG+TGG | + | chr8_1:11806319-11806338 | Msa1178920:intron | 35.0% | |
CATTCGTTGACGATACTTAT+AGG | + | chr8_1:11806403-11806422 | Msa1178920:intron | 35.0% | |
GATACTTATAGGCTCTGTTT+AGG | + | chr8_1:11806414-11806433 | Msa1178920:intron | 35.0% | |
ATACTAGTATAAGCGCTTGT+GGG | - | chr8_1:11806630-11806649 | None:intergenic | 35.0% | |
AATACTAGTATAAGCGCTTG+TGG | - | chr8_1:11806631-11806650 | None:intergenic | 35.0% | |
AACAACTTCAGATATGGTGT+TGG | + | chr8_1:11806856-11806875 | Msa1178920:intron | 35.0% | |
GGTGTATCTAATACTGTGTT+TGG | - | chr8_1:11806929-11806948 | None:intergenic | 35.0% | |
AGAGAAGATTTCCATATCAG+GGG | - | chr8_1:11807258-11807277 | None:intergenic | 35.0% | |
GAGAGAAGATTTCCATATCA+GGG | - | chr8_1:11807259-11807278 | None:intergenic | 35.0% | |
AGAGAGAAGATTTCCATATC+AGG | - | chr8_1:11807260-11807279 | None:intergenic | 35.0% | |
ATCTTCTCTCTATATGGAGT+TGG | + | chr8_1:11807269-11807288 | Msa1178920:CDS | 35.0% | |
ATGTATCCTGAACTTAGAAC+TGG | - | chr8_1:11807443-11807462 | None:intergenic | 35.0% | |
CATATTCTCGAACATAAGTG+CGG | - | chr8_1:11807514-11807533 | None:intergenic | 35.0% | |
GGTGCTCATGTTGATATAAT+GGG | + | chr8_1:11807581-11807600 | Msa1178920:CDS | 35.0% | |
! | CGTTGATTGAAGATGTTATG+AGG | + | chr8_1:11807612-11807631 | Msa1178920:CDS | 35.0% |
AGAATCAAGTTACCTTTGTG+AGG | + | chr8_1:11807707-11807726 | Msa1178920:CDS | 35.0% | |
GAATCAAGTTACCTTTGTGA+GGG | + | chr8_1:11807708-11807727 | Msa1178920:CDS | 35.0% | |
AATCAAGTTACCTTTGTGAG+GGG | + | chr8_1:11807709-11807728 | Msa1178920:exon | 35.0% | |
! | CCTTTAGAGAAATGAAAGAG+TGG | - | chr8_1:11807886-11807905 | None:intergenic | 35.0% |
CCACTCTTTCATTTCTCTAA+AGG | + | chr8_1:11807883-11807902 | Msa1178920:three_prime_UTR | 35.0% | |
GAAATTCTGAGTGCATCTTA+TGG | - | chr8_1:11807964-11807983 | None:intergenic | 35.0% | |
TAAGATGCACTCAGAATTTC+TGG | + | chr8_1:11807964-11807983 | Msa1178920:three_prime_UTR | 35.0% | |
CATATTTGTCAGATGCTTCA+TGG | + | chr8_1:11808082-11808101 | Msa1178920:three_prime_UTR | 35.0% | |
TTTGTGAAGGTAGTGAGAGA+AGG | - | chr8_1:11802046-11802065 | None:intergenic | 40.0% | |
AATATTAGCATCGCACAGAG+AGG | - | chr8_1:11802097-11802116 | None:intergenic | 40.0% | |
GCTTTGATCCGAAGAAGAAA+AGG | + | chr8_1:11802416-11802435 | Msa1178920:CDS | 40.0% | |
! | GTTCTGACCCTTTTCTTCTT+CGG | - | chr8_1:11802427-11802446 | None:intergenic | 40.0% |
AAAAGGGTCAGAACCAGAAA+AGG | + | chr8_1:11802433-11802452 | Msa1178920:CDS | 40.0% | |
AAAGGGTCAGAACCAGAAAA+GGG | + | chr8_1:11802434-11802453 | Msa1178920:CDS | 40.0% | |
! | TTTTCGCTACTACCCTTTTC+TGG | - | chr8_1:11802449-11802468 | None:intergenic | 40.0% |
CAAGAAGAAAAACAAGGACG+AGG | + | chr8_1:11802538-11802557 | Msa1178920:CDS | 40.0% | |
! | CTTGTGTTGACAGTTGTTGT+TGG | + | chr8_1:11802594-11802613 | Msa1178920:CDS | 40.0% |
!! | GACAGTTGTTGTTGGTTTGT+TGG | + | chr8_1:11802602-11802621 | Msa1178920:CDS | 40.0% |
ACATACTGAGGAAATGAAGC+TGG | - | chr8_1:11802677-11802696 | None:intergenic | 40.0% | |
ATTTCCTCAGTATGTCACTG+AGG | + | chr8_1:11802682-11802701 | Msa1178920:CDS | 40.0% | |
TATGTCACTGAGGCTATAAC+TGG | + | chr8_1:11802692-11802711 | Msa1178920:CDS | 40.0% | |
AATTTCAAACCAGGTGGATC+AGG | - | chr8_1:11802725-11802744 | None:intergenic | 40.0% | |
AGTGTGCTGAAGGATTGTTT+AGG | + | chr8_1:11802831-11802850 | Msa1178920:CDS | 40.0% | |
! | ATAGCTTTGCTTGGTTGTGT+TGG | + | chr8_1:11802925-11802944 | Msa1178920:intron | 40.0% |
TCTATAATTGGTGGAGACAC+TGG | + | chr8_1:11803217-11803236 | Msa1178920:intron | 40.0% | |
! | ATTCTTGCTCTTTGGAGACT+TGG | + | chr8_1:11803291-11803310 | Msa1178920:intron | 40.0% |
!! | TTATTGGTTGGTGAGCTGTT+TGG | + | chr8_1:11803607-11803626 | Msa1178920:intron | 40.0% |
! | CATTGGAAGGATGATTTGGA+AGG | + | chr8_1:11803693-11803712 | Msa1178920:intron | 40.0% |
! | GAACTCCTCTTTTGTGGTAT+TGG | + | chr8_1:11803716-11803735 | Msa1178920:intron | 40.0% |
TTTCCATGTCCATTTGTGAG+TGG | + | chr8_1:11804023-11804042 | Msa1178920:intron | 40.0% | |
ACAGTACTTCCACTCACAAA+TGG | - | chr8_1:11804035-11804054 | None:intergenic | 40.0% | |
TCCCATCATAGACGTAGAAA+TGG | + | chr8_1:11804256-11804275 | Msa1178920:intron | 40.0% | |
CATTCCTGTTTCATTGTCGA+GGG | - | chr8_1:11804345-11804364 | None:intergenic | 40.0% | |
TGTACATGGCTGCATATGAT+TGG | + | chr8_1:11804492-11804511 | Msa1178920:CDS | 40.0% | |
GAACTCATGGTTTCCACTAA+TGG | + | chr8_1:11804673-11804692 | Msa1178920:CDS | 40.0% | |
! | CACTAATGGTGGAAATAAGG+CGG | + | chr8_1:11804687-11804706 | Msa1178920:CDS | 40.0% |
AAGGCAATTGTAAACATCGG+TGG | + | chr8_1:11804823-11804842 | Msa1178920:CDS | 40.0% | |
!! | AACATCGGTGGACCATTTTT+AGG | + | chr8_1:11804835-11804854 | Msa1178920:CDS | 40.0% |
!! | GCCTTTGGAACACCTAAAAA+TGG | - | chr8_1:11804850-11804869 | None:intergenic | 40.0% |
TTATGGCCATGCTAGTTACT+AGG | + | chr8_1:11804929-11804948 | Msa1178920:intron | 40.0% | |
TTATGAAGATGACTCGCACT+TGG | + | chr8_1:11805378-11805397 | Msa1178920:CDS | 40.0% | |
TATGAAGATGACTCGCACTT+GGG | + | chr8_1:11805379-11805398 | Msa1178920:CDS | 40.0% | |
ATGTCAATGATACCAAAGGG+AGG | + | chr8_1:11805410-11805429 | Msa1178920:CDS | 40.0% | |
TGTCAATGATACCAAAGGGA+GGG | + | chr8_1:11805411-11805430 | Msa1178920:CDS | 40.0% | |
AGTCTCACAAGTGCTTATAC+CGG | - | chr8_1:11805692-11805711 | None:intergenic | 40.0% | |
AAGCTATCATGAAGAGCTTG+TGG | - | chr8_1:11805739-11805758 | None:intergenic | 40.0% | |
TAAGCACACAAGACAATGCA+GGG | - | chr8_1:11805903-11805922 | None:intergenic | 40.0% | |
ATAAGCACACAAGACAATGC+AGG | - | chr8_1:11805904-11805923 | None:intergenic | 40.0% | |
CTCATTTGTACTTGACACTC+AGG | + | chr8_1:11805953-11805972 | Msa1178920:intron | 40.0% | |
! | GTGGACTGAATACCATGATA+TGG | + | chr8_1:11806036-11806055 | Msa1178920:CDS | 40.0% |
! | GTTTGTTGCTCCGAAAATGA+TGG | + | chr8_1:11806129-11806148 | Msa1178920:CDS | 40.0% |
AAGCTATACTGGAGAGCTTA+TGG | + | chr8_1:11806565-11806584 | Msa1178920:intron | 40.0% | |
GGATTGTGTGAGATAGCTTA+TGG | - | chr8_1:11806609-11806628 | None:intergenic | 40.0% | |
!! | CTTTGGATTGGCGTTGAAAA+AGG | + | chr8_1:11806685-11806704 | Msa1178920:intron | 40.0% |
! | TTATTTTCTCTCACCTCGGA+TGG | + | chr8_1:11806806-11806825 | Msa1178920:intron | 40.0% |
GCTAGTAAATATTCCATCCG+AGG | - | chr8_1:11806822-11806841 | None:intergenic | 40.0% | |
TTGGAAAGATGATGACCTGA+GGG | - | chr8_1:11807134-11807153 | None:intergenic | 40.0% | |
!! | ATTTCCATATCAGGGGCATT+TGG | - | chr8_1:11807251-11807270 | None:intergenic | 40.0% |
TATAAGCTCTTTCGGTTGGT+AGG | - | chr8_1:11807295-11807314 | None:intergenic | 40.0% | |
GAAATTGATCCTAATGCCGA+TGG | + | chr8_1:11807356-11807375 | Msa1178920:CDS | 40.0% | |
ACTAACTTTGTCACCACCAT+CGG | - | chr8_1:11807375-11807394 | None:intergenic | 40.0% | |
TCCTGAACTTAGAACTGGAA+CGG | - | chr8_1:11807438-11807457 | None:intergenic | 40.0% | |
TCAGGATACATGTGTGCTAA+AGG | + | chr8_1:11807452-11807471 | Msa1178920:CDS | 40.0% | |
GATACATGTGTGCTAAAGGT+TGG | + | chr8_1:11807456-11807475 | Msa1178920:CDS | 40.0% | |
CGGTGCTCATGTTGATATAA+TGG | + | chr8_1:11807580-11807599 | Msa1178920:CDS | 40.0% | |
AGAAGAATTGGGAGGTGATA+AGG | + | chr8_1:11807655-11807674 | Msa1178920:CDS | 40.0% | |
!!! | TTTTGGAACCATCCAGTAAC+GGG | - | chr8_1:11807747-11807766 | None:intergenic | 40.0% |
!!! | CTTTTGGAACCATCCAGTAA+CGG | - | chr8_1:11807748-11807767 | None:intergenic | 40.0% |
ATTCTGCTTTACTCGCAAAG+GGG | - | chr8_1:11807857-11807876 | None:intergenic | 40.0% | |
CATTCTGCTTTACTCGCAAA+GGG | - | chr8_1:11807858-11807877 | None:intergenic | 40.0% | |
CAAATTCAGATTCCAGTGAG+TGG | + | chr8_1:11807997-11808016 | Msa1178920:three_prime_UTR | 40.0% | |
ACAGAGAGGAACGATGAGAA+GGG | - | chr8_1:11802083-11802102 | None:intergenic | 45.0% | |
TCTTCTTCGGATCAAAGCCA+TGG | - | chr8_1:11802414-11802433 | None:intergenic | 45.0% | |
ATAGCCTCAGTGACATACTG+AGG | - | chr8_1:11802689-11802708 | None:intergenic | 45.0% | |
! | CATCCAGTGGTTTTTGTTCC+CGG | + | chr8_1:11802770-11802789 | Msa1178920:CDS | 45.0% |
! | ATCCAGTGGTTTTTGTTCCC+GGG | + | chr8_1:11802771-11802790 | Msa1178920:CDS | 45.0% |
TTTGTTCCCGGGATTGTTAC+CGG | + | chr8_1:11802782-11802801 | Msa1178920:CDS | 45.0% | |
! | TTACCGGTGGACTTGAACTT+TGG | + | chr8_1:11802798-11802817 | Msa1178920:CDS | 45.0% |
! | TACCGGTGGACTTGAACTTT+GGG | + | chr8_1:11802799-11802818 | Msa1178920:CDS | 45.0% |
TTTAGGAAGAGATTGTGGGG+TGG | + | chr8_1:11802848-11802867 | Msa1178920:CDS | 45.0% | |
! | AGATTGTGGGGTGGTACTTT+TGG | + | chr8_1:11802857-11802876 | Msa1178920:CDS | 45.0% |
TATGATGAGGATGGTGATCG+TGG | + | chr8_1:11803070-11803089 | Msa1178920:intron | 45.0% | |
GGTGGAGACACTGGTAAATT+TGG | + | chr8_1:11803226-11803245 | Msa1178920:intron | 45.0% | |
AAGCGCCAATACCACAAAAG+AGG | - | chr8_1:11803724-11803743 | None:intergenic | 45.0% | |
CTTCCACTCACAAATGGACA+TGG | - | chr8_1:11804029-11804048 | None:intergenic | 45.0% | |
TGTGTTACAGACCTTCATGC+TGG | + | chr8_1:11804306-11804325 | Msa1178920:intron | 45.0% | |
GTGTTACAGACCTTCATGCT+GGG | + | chr8_1:11804307-11804326 | Msa1178920:intron | 45.0% | |
ATGTCCCTCGACAATGAAAC+AGG | + | chr8_1:11804338-11804357 | Msa1178920:CDS | 45.0% | |
CCATTCCTGTTTCATTGTCG+AGG | - | chr8_1:11804346-11804365 | None:intergenic | 45.0% | |
CCTCGACAATGAAACAGGAA+TGG | + | chr8_1:11804343-11804362 | Msa1178920:CDS | 45.0% | |
TTGCCGCAGGATACTTTGTT+TGG | + | chr8_1:11804420-11804439 | Msa1178920:CDS | 45.0% | |
! | TGCCGCAGGATACTTTGTTT+GGG | + | chr8_1:11804421-11804440 | Msa1178920:CDS | 45.0% |
TGCGTGCCAAGTTAGCAATT+AGG | - | chr8_1:11804451-11804470 | None:intergenic | 45.0% | |
ATTGCTAACTTGGCACGCAT+CGG | + | chr8_1:11804452-11804471 | Msa1178920:CDS | 45.0% | |
TGCGGGATCAAACACTAAGT+CGG | + | chr8_1:11804635-11804654 | Msa1178920:CDS | 45.0% | |
CTCATGGTTTCCACTAATGG+TGG | + | chr8_1:11804676-11804695 | Msa1178920:CDS | 45.0% | |
!! | CGCCTTATTTCCACCATTAG+TGG | - | chr8_1:11804689-11804708 | None:intergenic | 45.0% |
TACAAAACCCCCATCGAATG+TGG | - | chr8_1:11804721-11804740 | None:intergenic | 45.0% | |
GTGTTCCAAAGGCTATAGCA+GGG | + | chr8_1:11804857-11804876 | Msa1178920:CDS | 45.0% | |
AAAAGCCCTGCTATAGCCTT+TGG | - | chr8_1:11804865-11804884 | None:intergenic | 45.0% | |
ACCTTGCAACAGCAATGTCT+CGG | - | chr8_1:11804900-11804919 | None:intergenic | 45.0% | |
GTGTTTGACACTGACACAAG+CGG | - | chr8_1:11805106-11805125 | None:intergenic | 45.0% | |
GTCAATGATACCAAAGGGAG+GGG | + | chr8_1:11805412-11805431 | Msa1178920:CDS | 45.0% | |
TTTCCTCTGGTGACCAATCA+AGG | - | chr8_1:11805454-11805473 | None:intergenic | 45.0% | |
TGCTTTGCTTTCTCGTGTGA+AGG | - | chr8_1:11805484-11805503 | None:intergenic | 45.0% | |
ATACCATGATATGGGAGTCG+AGG | + | chr8_1:11806045-11806064 | Msa1178920:CDS | 45.0% | |
TACCATGATATGGGAGTCGA+GGG | + | chr8_1:11806046-11806065 | Msa1178920:CDS | 45.0% | |
CTTGGAAAGATGATGACCTG+AGG | - | chr8_1:11807135-11807154 | None:intergenic | 45.0% | |
GTTACCAAATGCCCCTGATA+TGG | + | chr8_1:11807244-11807263 | Msa1178920:CDS | 45.0% | |
GGAATGTAACACTCGGCAAA+GGG | - | chr8_1:11807332-11807351 | None:intergenic | 45.0% | |
AGGAATGTAACACTCGGCAA+AGG | - | chr8_1:11807333-11807352 | None:intergenic | 45.0% | |
ATTGATCCTAATGCCGATGG+TGG | + | chr8_1:11807359-11807378 | Msa1178920:CDS | 45.0% | |
GATGGTGTCTACACTGTTGA+TGG | + | chr8_1:11807404-11807423 | Msa1178920:CDS | 45.0% | |
!! | ACCGTTCCAGTTCTAAGTTC+AGG | + | chr8_1:11807434-11807453 | Msa1178920:CDS | 45.0% |
GAAGGTAGAGGAACACAAAG+CGG | + | chr8_1:11807560-11807579 | Msa1178920:CDS | 45.0% | |
AGGAGCCAAAGGAGAAGAAT+TGG | + | chr8_1:11807643-11807662 | Msa1178920:CDS | 45.0% | |
GGAGCCAAAGGAGAAGAATT+GGG | + | chr8_1:11807644-11807663 | Msa1178920:CDS | 45.0% | |
ACCTCCCAATTCTTCTCCTT+TGG | - | chr8_1:11807651-11807670 | None:intergenic | 45.0% | |
AAGTTACCTTTGTGAGGGGT+TGG | + | chr8_1:11807713-11807732 | Msa1178920:exon | 45.0% | |
CGTTACTGGATGGTTCCAAA+AGG | + | chr8_1:11807746-11807765 | Msa1178920:three_prime_UTR | 45.0% | |
TTCTTACCGGTACTATCGAG+AGG | + | chr8_1:11807824-11807843 | Msa1178920:three_prime_UTR | 45.0% | |
GCATTCTGCTTTACTCGCAA+AGG | - | chr8_1:11807859-11807878 | None:intergenic | 45.0% | |
CACAGAGAGGAACGATGAGA+AGG | - | chr8_1:11802084-11802103 | None:intergenic | 50.0% | |
AAACCAGGTGGATCAGGCAT+AGG | - | chr8_1:11802719-11802738 | None:intergenic | 50.0% | |
CTTGAGTGTCAAGCATCCAG+TGG | + | chr8_1:11802757-11802776 | Msa1178920:CDS | 50.0% | |
ATCCCGGGAACAAAAACCAC+TGG | - | chr8_1:11802776-11802795 | None:intergenic | 50.0% | |
AAGTCCACCGGTAACAATCC+CGG | - | chr8_1:11802792-11802811 | None:intergenic | 50.0% | |
CTCCCAAAGTTCAAGTCCAC+CGG | - | chr8_1:11802804-11802823 | None:intergenic | 50.0% | |
! | GGTGGACTTGAACTTTGGGA+GGG | + | chr8_1:11802803-11802822 | Msa1178920:CDS | 50.0% |
! | GTGGACTTGAACTTTGGGAG+GGG | + | chr8_1:11802804-11802823 | Msa1178920:CDS | 50.0% |
ATGAGGATGGTGATCGTGGT+TGG | + | chr8_1:11803074-11803093 | Msa1178920:intron | 50.0% | |
! | GGAAGGGAACTCCTCTTTTG+TGG | + | chr8_1:11803710-11803729 | Msa1178920:intron | 50.0% |
TTACAGACCTTCATGCTGGG+TGG | + | chr8_1:11804310-11804329 | Msa1178920:intron | 50.0% | |
GAAACAGGAATGGATCCACC+TGG | + | chr8_1:11804353-11804372 | Msa1178920:CDS | 50.0% | |
ATCCACCTGGCATTAGAGTC+CGG | + | chr8_1:11804366-11804385 | Msa1178920:CDS | 50.0% | |
! | CGCCCAAACAAAGTATCCTG+CGG | - | chr8_1:11804426-11804445 | None:intergenic | 50.0% |
! | CGCAGGATACTTTGTTTGGG+CGG | + | chr8_1:11804424-11804443 | Msa1178920:CDS | 50.0% |
GGCGGTCCTAATTGCTAACT+TGG | + | chr8_1:11804442-11804461 | Msa1178920:CDS | 50.0% | |
! | GTTGAAGCACCAGCTCCAAT+GGG | + | chr8_1:11804763-11804782 | Msa1178920:CDS | 50.0% |
GGTGTTCCAAAGGCTATAGC+AGG | + | chr8_1:11804856-11804875 | Msa1178920:CDS | 50.0% | |
CCTTGCAACAGCAATGTCTC+GGG | - | chr8_1:11804899-11804918 | None:intergenic | 50.0% | |
! | TGACTTGTATGGGTGTAGCC+TGG | + | chr8_1:11804960-11804979 | Msa1178920:intron | 50.0% |
!! | TGAAGCACTGACACAGACAC+CGG | + | chr8_1:11805061-11805080 | Msa1178920:intron | 50.0% |
!! | TATGCAGCACCGACACTTCA+GGG | - | chr8_1:11805136-11805155 | None:intergenic | 50.0% |
AAAGGGAGGGGACACCATAT+GGG | + | chr8_1:11805424-11805443 | Msa1178920:CDS | 50.0% | |
TCGGAGCAACAAACTGAAGC+AGG | - | chr8_1:11806123-11806142 | None:intergenic | 50.0% | |
! | CTACCACGCGCCATCATTTT+CGG | - | chr8_1:11806142-11806161 | None:intergenic | 50.0% |
GGAACATATCAAGAGCGGAG+AGG | - | chr8_1:11807046-11807065 | None:intergenic | 50.0% | |
AGTTGAGTACTTGAGCCCTC+AGG | + | chr8_1:11807116-11807135 | Msa1178920:intron | 50.0% | |
TTGTCACCACCATCGGCATT+AGG | - | chr8_1:11807368-11807387 | None:intergenic | 50.0% | |
ATGTGTGCTAAAGGTTGGCG+CGG | + | chr8_1:11807461-11807480 | Msa1178920:CDS | 50.0% | |
ACATAAGTGCGGATCCCTGA+AGG | - | chr8_1:11807503-11807522 | None:intergenic | 50.0% | |
TCCTCTACCTTCTAGCAGGT+TGG | - | chr8_1:11807552-11807571 | None:intergenic | 50.0% | |
GTGTTCCTCTACCTTCTAGC+AGG | - | chr8_1:11807556-11807575 | None:intergenic | 50.0% | |
GATGTTATGAGGGTTGCAGC+AGG | + | chr8_1:11807623-11807642 | Msa1178920:CDS | 50.0% | |
GCCAAAGGAGAAGAATTGGG+AGG | + | chr8_1:11807647-11807666 | Msa1178920:CDS | 50.0% | |
AGGAATCCAACCCCTCACAA+AGG | - | chr8_1:11807722-11807741 | None:intergenic | 50.0% | |
TTGGATTCCTCTCCCGTTAC+TGG | + | chr8_1:11807732-11807751 | Msa1178920:three_prime_UTR | 50.0% | |
ATTCCTCTCCCGTTACTGGA+TGG | + | chr8_1:11807736-11807755 | Msa1178920:three_prime_UTR | 50.0% | |
GGATGGTTCCAAAAGGAGAG+AGG | + | chr8_1:11807753-11807772 | Msa1178920:three_prime_UTR | 50.0% | |
! | TGCGTCTTCCTCTCTCCTTT+TGG | - | chr8_1:11807764-11807783 | None:intergenic | 50.0% |
GTGGATCCTCTCGATAGTAC+CGG | - | chr8_1:11807833-11807852 | None:intergenic | 50.0% | |
ATTCCAGTGAGTGGCGAAAC+AGG | + | chr8_1:11808006-11808025 | Msa1178920:three_prime_UTR | 50.0% | |
AGTCCACCGGTAACAATCCC+GGG | - | chr8_1:11802791-11802810 | None:intergenic | 55.0% | |
! | CGGTGGACTTGAACTTTGGG+AGG | + | chr8_1:11802802-11802821 | Msa1178920:CDS | 55.0% |
!! | TGGTTGGTGGGTGAGCTGTT+CGG | + | chr8_1:11803152-11803171 | Msa1178920:intron | 55.0% |
ATGTGCTCCACCCAGCATGA+AGG | - | chr8_1:11804320-11804339 | None:intergenic | 55.0% | |
ATTAGAGTCCGGCCTGTCTC+AGG | + | chr8_1:11804377-11804396 | Msa1178920:CDS | 55.0% | |
CTACAAGTCCTGAGACAGGC+CGG | - | chr8_1:11804388-11804407 | None:intergenic | 55.0% | |
GCAGCTACAAGTCCTGAGAC+AGG | - | chr8_1:11804392-11804411 | None:intergenic | 55.0% | |
! | GGTTGAAGCACCAGCTCCAA+TGG | + | chr8_1:11804762-11804781 | Msa1178920:CDS | 55.0% |
! | CCCGAGACATTGCTGTTGCA+AGG | + | chr8_1:11804896-11804915 | Msa1178920:CDS | 55.0% |
!! | CTATGCAGCACCGACACTTC+AGG | - | chr8_1:11805137-11805156 | None:intergenic | 55.0% |
ATCACAAGGGCGATTGCACC+AGG | + | chr8_1:11805311-11805330 | Msa1178920:intron | 55.0% | |
TCACAAGGGCGATTGCACCA+GGG | + | chr8_1:11805312-11805331 | Msa1178920:intron | 55.0% | |
CATATGGTGTCCCCTCCCTT+TGG | - | chr8_1:11805425-11805444 | None:intergenic | 55.0% | |
CAAAGGGAGGGGACACCATA+TGG | + | chr8_1:11805423-11805442 | Msa1178920:CDS | 55.0% | |
AAGGGAGGGGACACCATATG+GGG | + | chr8_1:11805425-11805444 | Msa1178920:CDS | 55.0% | |
TGGTCACCAGAGGAAAGCTG+TGG | + | chr8_1:11805458-11805477 | Msa1178920:CDS | 55.0% | |
TGAAGGCCACAGCTTTCCTC+TGG | - | chr8_1:11805467-11805486 | None:intergenic | 55.0% | |
GTTTGGCAAAGCTGTCGCAG+AGG | + | chr8_1:11805571-11805590 | Msa1178920:intron | 55.0% | |
AAGACAATGCAGGGCCCTGT+TGG | - | chr8_1:11805894-11805913 | None:intergenic | 55.0% | |
CTCCCTCGACTCCCATATCA+TGG | - | chr8_1:11806051-11806070 | None:intergenic | 55.0% | |
! | CTACCTTCTAGCAGGTTGGC+TGG | - | chr8_1:11807548-11807567 | None:intergenic | 55.0% |
GCCAACCTGCTAGAAGGTAG+AGG | + | chr8_1:11807548-11807567 | Msa1178920:CDS | 55.0% | |
! | GAACCATCCAGTAACGGGAG+AGG | - | chr8_1:11807742-11807761 | None:intergenic | 55.0% |
CTTCCTGTTTCGCCACTCAC+TGG | - | chr8_1:11808012-11808031 | None:intergenic | 55.0% | |
GAGTGGCGAAACAGGAAGCA+AGG | + | chr8_1:11808014-11808033 | Msa1178920:three_prime_UTR | 55.0% | |
GGTCCTATGCCTGATCCACC+TGG | + | chr8_1:11802713-11802732 | Msa1178920:CDS | 60.0% | |
GTTCCCGGGATTGTTACCGG+TGG | + | chr8_1:11802785-11802804 | Msa1178920:CDS | 60.0% | |
!! | GAGGGGCATCAGTGTGCTGA+AGG | + | chr8_1:11802821-11802840 | Msa1178920:CDS | 60.0% |
ACAGGCCGGACTCTAATGCC+AGG | - | chr8_1:11804374-11804393 | None:intergenic | 60.0% | |
! | GCTGCTGACTACTTTGCCGC+AGG | + | chr8_1:11804407-11804426 | Msa1178920:CDS | 60.0% |
! | GAAGCACCAGCTCCAATGGG+TGG | + | chr8_1:11804766-11804785 | Msa1178920:CDS | 60.0% |
! | GTGGTGGAGGAGGACCAGAT+TGG | + | chr8_1:11804785-11804804 | Msa1178920:CDS | 60.0% |
ACCGACACGCCCTGAAGTGT+CGG | + | chr8_1:11805124-11805143 | Msa1178920:intron | 60.0% | |
ACCGACACTTCAGGGCGTGT+CGG | - | chr8_1:11805128-11805147 | None:intergenic | 60.0% | |
CCAATCAAGGCCGCCCCATA+TGG | - | chr8_1:11805441-11805460 | None:intergenic | 60.0% | |
CCATATGGGGCGGCCTTGAT+TGG | + | chr8_1:11805438-11805457 | Msa1178920:CDS | 60.0% | |
! | CGGCCTTGATTGGTCACCAG+AGG | + | chr8_1:11805448-11805467 | Msa1178920:CDS | 60.0% |
! | GCTCCGAAAATGATGGCGCG+TGG | + | chr8_1:11806136-11806155 | Msa1178920:CDS | 60.0% |
! | CCTTCTAGCAGGTTGGCTGG+AGG | - | chr8_1:11807545-11807564 | None:intergenic | 60.0% |
CCTCCAGCCAACCTGCTAGA+AGG | + | chr8_1:11807542-11807561 | Msa1178920:CDS | 60.0% | |
AGGGTTGCAGCAGGAGCCAA+AGG | + | chr8_1:11807632-11807651 | Msa1178920:CDS | 60.0% | |
GCTTTACTCGCAAAGGGGCG+TGG | - | chr8_1:11807852-11807871 | None:intergenic | 60.0% | |
GGCCGGACTCTAATGCCAGG+TGG | - | chr8_1:11804371-11804390 | None:intergenic | 65.0% | |
GCACCAGCTCCAATGGGTGG+TGG | + | chr8_1:11804769-11804788 | Msa1178920:CDS | 65.0% | |
CCTCCACCACCCATTGGAGC+TGG | - | chr8_1:11804775-11804794 | None:intergenic | 65.0% | |
! | CCAGCTCCAATGGGTGGTGG+AGG | + | chr8_1:11804772-11804791 | Msa1178920:CDS | 65.0% |
!! | GCTCCAATGGGTGGTGGAGG+AGG | + | chr8_1:11804775-11804794 | Msa1178920:CDS | 65.0% |
GGTCCTCCTCCACCACCCAT+TGG | - | chr8_1:11804781-11804800 | None:intergenic | 65.0% | |
GGAGGGGACACCATATGGGG+CGG | + | chr8_1:11805428-11805447 | Msa1178920:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 11802028 | 11808248 | 11802028 | ID=Msa1178920;Name=Msa1178920 |
chr8_1 | mRNA | 11802028 | 11808248 | 11802028 | ID=Msa1178920-mRNA-1;Parent=Msa1178920;Name=Msa1178920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=196|0.83|0.85|1|0.83|0.71|7|521|665 |
chr8_1 | exon | 11802028 | 11802084 | 11802028 | ID=Msa1178920-mRNA-1:exon:4204;Parent=Msa1178920-mRNA-1 |
chr8_1 | exon | 11802274 | 11802894 | 11802274 | ID=Msa1178920-mRNA-1:exon:4205;Parent=Msa1178920-mRNA-1 |
chr8_1 | exon | 11804316 | 11804538 | 11804316 | ID=Msa1178920-mRNA-1:exon:4206;Parent=Msa1178920-mRNA-1 |
chr8_1 | exon | 11804634 | 11804917 | 11804634 | ID=Msa1178920-mRNA-1:exon:4207;Parent=Msa1178920-mRNA-1 |
chr8_1 | exon | 11805319 | 11805583 | 11805319 | ID=Msa1178920-mRNA-1:exon:4208;Parent=Msa1178920-mRNA-1 |
chr8_1 | exon | 11805989 | 11806248 | 11805989 | ID=Msa1178920-mRNA-1:exon:4209;Parent=Msa1178920-mRNA-1 |
chr8_1 | exon | 11807244 | 11808248 | 11807244 | ID=Msa1178920-mRNA-1:exon:4210;Parent=Msa1178920-mRNA-1 |
chr8_1 | five_prime_UTR | 11802028 | 11802084 | 11802028 | ID=Msa1178920-mRNA-1:five_prime_utr;Parent=Msa1178920-mRNA-1 |
chr8_1 | five_prime_UTR | 11802274 | 11802412 | 11802274 | ID=Msa1178920-mRNA-1:five_prime_utr;Parent=Msa1178920-mRNA-1 |
chr8_1 | CDS | 11802413 | 11802894 | 11802413 | ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1 |
chr8_1 | CDS | 11804316 | 11804538 | 11804316 | ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1 |
chr8_1 | CDS | 11804634 | 11804917 | 11804634 | ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1 |
chr8_1 | CDS | 11805319 | 11805583 | 11805319 | ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1 |
chr8_1 | CDS | 11805989 | 11806248 | 11805989 | ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1 |
chr8_1 | CDS | 11807244 | 11807727 | 11807244 | ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1 |
chr8_1 | three_prime_UTR | 11807728 | 11808248 | 11807728 | ID=Msa1178920-mRNA-1:three_prime_utr;Parent=Msa1178920-mRNA-1 |
Gene Sequence |
Protein sequence |