AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1178920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178920 MtrunA17_Chr8g0343491 96.618 680 5 3 1 665 1 677 0.0 1352
Msa1178920 MtrunA17_Chr4g0027511 52.019 644 266 11 54 665 6 638 0.0 659
Msa1178920 MtrunA17_Chr6g0462921 54.286 105 31 2 229 333 38 125 3.15e-26 104
Msa1178920 MtrunA17_Chr4g0070721 37.963 108 27 2 558 665 35 102 5.28e-16 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1178920 AT5G13640.1 72.449 686 153 6 1 665 1 671 0.0 1022
Msa1178920 AT5G13640.3 75.479 522 110 3 162 665 6 527 0.0 810
Msa1178920 AT5G13640.2 75.340 515 109 3 169 665 1 515 0.0 796
Msa1178920 AT3G44830.1 55.621 676 251 10 23 665 6 665 0.0 773
Msa1178920 AT1G04010.1 22.774 483 304 17 123 585 44 477 1.83e-16 83.6

Find 219 sgRNAs with CRISPR-Local

Find 419 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACAATTGCCTTAATATATT+TGG 0.103968 8_1:-11804812 None:intergenic
TAAGATGCACTCAGAATTTC+TGG 0.156244 8_1:+11807964 Msa1178920:three_prime_UTR
AATATAATAATAATATTTAT+TGG 0.159415 8_1:-11807785 None:intergenic
TTGGATTCCTCTCCCGTTAC+TGG 0.191227 8_1:+11807732 Msa1178920:three_prime_UTR
TATTTGTAGTGTTCATATTT+AGG 0.211408 8_1:-11806202 None:intergenic
TTGTTAACAGGGTGCAATTA+AGG 0.231525 8_1:+11805979 Msa1178920:intron
TTGGTTGCATTTGTACTTTA+TGG 0.241231 8_1:+11802621 Msa1178920:CDS
AGATTGTGGGGTGGTACTTT+TGG 0.243250 8_1:+11802857 Msa1178920:CDS
TTGCCGCAGGATACTTTGTT+TGG 0.248698 8_1:+11804420 Msa1178920:CDS
GGTAGTGATCATTTCTCTTA+TGG 0.264256 8_1:+11806157 Msa1178920:CDS
CGGTGCTCATGTTGATATAA+TGG 0.274500 8_1:+11807580 Msa1178920:CDS
TGCGTCTTCCTCTCTCCTTT+TGG 0.281518 8_1:-11807761 None:intergenic
CATATTTGTCAGATGCTTCA+TGG 0.282342 8_1:+11808082 Msa1178920:three_prime_UTR
AAAACAAGATTCAATCCTTC+AGG 0.299444 8_1:+11807485 Msa1178920:CDS
TGTGTCTATTTCTTTCTTAC+CGG 0.300944 8_1:+11807811 Msa1178920:three_prime_UTR
ATGGAAATCTTCTCTCTATA+TGG 0.302929 8_1:+11807263 Msa1178920:CDS
ACCTCCCAATTCTTCTCCTT+TGG 0.306639 8_1:-11807648 None:intergenic
TTACCGGTGGACTTGAACTT+TGG 0.316075 8_1:+11802798 Msa1178920:CDS
CGCCTTATTTCCACCATTAG+TGG 0.316185 8_1:-11804686 None:intergenic
TTCCACTAATGGTGGAAATA+AGG 0.317590 8_1:+11804684 Msa1178920:CDS
CTTATAAATATAAGCTCTTT+CGG 0.325469 8_1:-11807300 None:intergenic
AGGAGCCAAAGGAGAAGAAT+TGG 0.328819 8_1:+11807643 Msa1178920:CDS
TGTATTCTGATATCTTTAAA+TGG 0.332543 8_1:+11807678 Msa1178920:CDS
GTTACCAAATGCCCCTGATA+TGG 0.335640 8_1:+11807244 Msa1178920:CDS
GACAGTTGTTGTTGGTTTGT+TGG 0.336488 8_1:+11802602 Msa1178920:CDS
GAACTCATGGTTTCCACTAA+TGG 0.339436 8_1:+11804673 Msa1178920:CDS
TTTGTTCCCGGGATTGTTAC+CGG 0.341600 8_1:+11802782 Msa1178920:CDS
AGAGAGAAGATTTCCATATC+AGG 0.346793 8_1:-11807257 None:intergenic
AAAACATTAGATTTGTTGTA+TGG 0.353623 8_1:+11808044 Msa1178920:three_prime_UTR
GAAATTCTGAGTGCATCTTA+TGG 0.353986 8_1:-11807961 None:intergenic
CAAAGGGAGGGGACACCATA+TGG 0.361138 8_1:+11805423 Msa1178920:CDS
CCACTCTTTCATTTCTCTAA+AGG 0.367580 8_1:+11807883 Msa1178920:three_prime_UTR
ATTCCAGTGAGTGGCGAAAC+AGG 0.369077 8_1:+11808006 Msa1178920:three_prime_UTR
GTGGACTGAATACCATGATA+TGG 0.370394 8_1:+11806036 Msa1178920:CDS
TTGTCACCACCATCGGCATT+AGG 0.371415 8_1:-11807365 None:intergenic
AATATGAACACTACAAATAT+TGG 0.371581 8_1:+11806206 Msa1178920:CDS
AATAAAACAAATGTTAACTA+TGG 0.372300 8_1:+11805536 Msa1178920:CDS
ATTTCCATATCAGGGGCATT+TGG 0.379794 8_1:-11807248 None:intergenic
TACCGGTGGACTTGAACTTT+GGG 0.383614 8_1:+11802799 Msa1178920:CDS
CTTCCTGTTTCGCCACTCAC+TGG 0.394705 8_1:-11808009 None:intergenic
ACCGTTCCAGTTCTAAGTTC+AGG 0.399109 8_1:+11807434 Msa1178920:CDS
TGCCGCAGGATACTTTGTTT+GGG 0.402404 8_1:+11804421 Msa1178920:CDS
AAAAGCCCTGCTATAGCCTT+TGG 0.405655 8_1:-11804862 None:intergenic
TGTTAACAGGGTGCAATTAA+GGG 0.405717 8_1:+11805980 Msa1178920:intron
CCTCCACCACCCATTGGAGC+TGG 0.407920 8_1:-11804772 None:intergenic
GATTGTTTAGGAAGAGATTG+TGG 0.412017 8_1:+11802843 Msa1178920:CDS
AAATCTCACTTTGTCTCCAA+TGG 0.415645 8_1:-11806235 None:intergenic
ATTAGAGTCCGGCCTGTCTC+AGG 0.417705 8_1:+11804377 Msa1178920:CDS
AGAAGAATTGGGAGGTGATA+AGG 0.418018 8_1:+11807655 Msa1178920:CDS
CTTGTGTTGACAGTTGTTGT+TGG 0.423297 8_1:+11802594 Msa1178920:CDS
ATATATTTGGAACACCAATC+TGG 0.423493 8_1:-11804799 None:intergenic
CCTCCAGCCAACCTGCTAGA+AGG 0.424011 8_1:+11807542 Msa1178920:CDS
GTGTTCCTCTACCTTCTAGC+AGG 0.427920 8_1:-11807553 None:intergenic
AATTTCAAACCAGGTGGATC+AGG 0.428308 8_1:-11802722 None:intergenic
TATGGAAGAATGATATCGTT+TGG 0.432064 8_1:+11805554 Msa1178920:CDS
CGTTGATTGAAGATGTTATG+AGG 0.435055 8_1:+11807612 Msa1178920:CDS
AATCTCACTTTGTCTCCAAT+GGG 0.435990 8_1:-11806234 None:intergenic
CCATATGGGGCGGCCTTGAT+TGG 0.437777 8_1:+11805438 Msa1178920:CDS
TATGTCACTGAGGCTATAAC+TGG 0.439467 8_1:+11802692 Msa1178920:CDS
GGTGCTCATGTTGATATAAT+GGG 0.440547 8_1:+11807581 Msa1178920:CDS
CATATGGTGTCCCCTCCCTT+TGG 0.441069 8_1:-11805422 None:intergenic
TTGGTGTTCCAAATATATTA+AGG 0.441232 8_1:+11804804 Msa1178920:CDS
GCTTTACTCGCAAAGGGGCG+TGG 0.443355 8_1:-11807849 None:intergenic
AAAAGGGTCAGAACCAGAAA+AGG 0.444668 8_1:+11802433 Msa1178920:CDS
CTACCTTCTAGCAGGTTGGC+TGG 0.446447 8_1:-11807545 None:intergenic
GCTCCAATGGGTGGTGGAGG+AGG 0.446584 8_1:+11804775 Msa1178920:CDS
AAGTTACCTTTGTGAGGGGT+TGG 0.447573 8_1:+11807713 Msa1178920:exon
ATGTCCCTCGACAATGAAAC+AGG 0.448523 8_1:+11804338 Msa1178920:CDS
ATGTATCCTGAACTTAGAAC+TGG 0.451075 8_1:-11807440 None:intergenic
TGCTTTGCTTTCTCGTGTGA+AGG 0.451646 8_1:-11805481 None:intergenic
GGCGGTCCTAATTGCTAACT+TGG 0.452626 8_1:+11804442 Msa1178920:CDS
TTTCCTCTGGTGACCAATCA+AGG 0.454472 8_1:-11805451 None:intergenic
GCTTTGATCCGAAGAAGAAA+AGG 0.454828 8_1:+11802416 Msa1178920:CDS
CCAATCAAGGCCGCCCCATA+TGG 0.454908 8_1:-11805438 None:intergenic
CATTCTGCTTTACTCGCAAA+GGG 0.456332 8_1:-11807855 None:intergenic
ATCACAAGGGCGATTGCACC+AGG 0.458509 8_1:+11805311 Msa1178920:intron
GGTTTGAAATTGAAGAAAGA+AGG 0.461699 8_1:+11802734 Msa1178920:CDS
GTTATTATTCCACATTCGAT+GGG 0.463783 8_1:+11804709 Msa1178920:CDS
GGTCCTCCTCCACCACCCAT+TGG 0.468600 8_1:-11804778 None:intergenic
CCAGCTCCAATGGGTGGTGG+AGG 0.468894 8_1:+11804772 Msa1178920:CDS
TGTGTTACAGACCTTCATGC+TGG 0.470900 8_1:+11804306 Msa1178920:intron
CCATTCCTGTTTCATTGTCG+AGG 0.473998 8_1:-11804343 None:intergenic
TAAATATAAGCTCTTTCGGT+TGG 0.474291 8_1:-11807296 None:intergenic
TGTACATGGCTGCATATGAT+TGG 0.475105 8_1:+11804492 Msa1178920:CDS
CAAGAGGTATTTGCAACATT+GGG 0.475576 8_1:-11806004 None:intergenic
GAGAGAAGATTTCCATATCA+GGG 0.475876 8_1:-11807256 None:intergenic
TCCTCTACCTTCTAGCAGGT+TGG 0.476959 8_1:-11807549 None:intergenic
GGTGTTCCAAAGGCTATAGC+AGG 0.481359 8_1:+11804856 Msa1178920:CDS
GGTTGAAGCACCAGCTCCAA+TGG 0.483423 8_1:+11804762 Msa1178920:CDS
GTTTGTTGCTCCGAAAATGA+TGG 0.488987 8_1:+11806129 Msa1178920:CDS
ACCTTGCAACAGCAATGTCT+CGG 0.492893 8_1:-11804897 None:intergenic
AAGTCCACCGGTAACAATCC+CGG 0.497142 8_1:-11802789 None:intergenic
CGGTGGACTTGAACTTTGGG+AGG 0.499887 8_1:+11802802 Msa1178920:CDS
GAACATAAAGTTTACACAGC+TGG 0.501037 8_1:+11806085 Msa1178920:CDS
GGTTATTATTCCACATTCGA+TGG 0.501585 8_1:+11804708 Msa1178920:CDS
TCAGGATACATGTGTGCTAA+AGG 0.505128 8_1:+11807452 Msa1178920:CDS
GCATTAGGATCAATTTCAAA+AGG 0.506029 8_1:-11807350 None:intergenic
TTTGTGAAGGTAGTGAGAGA+AGG 0.506488 8_1:-11802043 None:intergenic
TATAAGCTCTTTCGGTTGGT+AGG 0.506491 8_1:-11807292 None:intergenic
GATGGTGTCTACACTGTTGA+TGG 0.507653 8_1:+11807404 Msa1178920:CDS
TCGGAGCAACAAACTGAAGC+AGG 0.508079 8_1:-11806120 None:intergenic
CAAATATTGGTCAAACCCAT+TGG 0.508140 8_1:+11806219 Msa1178920:CDS
AAAGGGAGGGGACACCATAT+GGG 0.509172 8_1:+11805424 Msa1178920:CDS
ATTCCTCTCCCGTTACTGGA+TGG 0.510025 8_1:+11807736 Msa1178920:three_prime_UTR
TGAAGGCCACAGCTTTCCTC+TGG 0.510466 8_1:-11805464 None:intergenic
GGAGCCAAAGGAGAAGAATT+GGG 0.511925 8_1:+11807644 Msa1178920:CDS
CTCCCTCGACTCCCATATCA+TGG 0.515621 8_1:-11806048 None:intergenic
GCATTCTGCTTTACTCGCAA+AGG 0.516241 8_1:-11807856 None:intergenic
ACAAGAGGTATTTGCAACAT+TGG 0.518958 8_1:-11806005 None:intergenic
AAGGGAGGGGACACCATATG+GGG 0.519875 8_1:+11805425 Msa1178920:CDS
CATTCCTGTTTCATTGTCGA+GGG 0.520640 8_1:-11804342 None:intergenic
ATTGTTTAGGAAGAGATTGT+GGG 0.522996 8_1:+11802844 Msa1178920:CDS
GGAGGGGACACCATATGGGG+CGG 0.523536 8_1:+11805428 Msa1178920:CDS
CCTTGCAACAGCAATGTCTC+GGG 0.526953 8_1:-11804896 None:intergenic
ATCTTCTCTCTATATGGAGT+TGG 0.529573 8_1:+11807269 Msa1178920:CDS
TCTTTCTTCAATTTCAAACC+AGG 0.532135 8_1:-11802731 None:intergenic
TGCGTGCCAAGTTAGCAATT+AGG 0.532533 8_1:-11804448 None:intergenic
GAGGGGCATCAGTGTGCTGA+AGG 0.535914 8_1:+11802821 Msa1178920:CDS
ATCCACCTGGCATTAGAGTC+CGG 0.536092 8_1:+11804366 Msa1178920:CDS
AGTGTGCTGAAGGATTGTTT+AGG 0.539602 8_1:+11802831 Msa1178920:CDS
AGTCCACCGGTAACAATCCC+GGG 0.539777 8_1:-11802788 None:intergenic
CAAAGGTAACTTGATTCTAT+CGG 0.540277 8_1:-11807702 None:intergenic
TTATGAAGATGACTCGCACT+TGG 0.542374 8_1:+11805378 Msa1178920:CDS
TCTTCTTCGGATCAAAGCCA+TGG 0.542681 8_1:-11802411 None:intergenic
GTCAATGATACCAAAGGGAG+GGG 0.543790 8_1:+11805412 Msa1178920:CDS
AGGGTTGCAGCAGGAGCCAA+AGG 0.547037 8_1:+11807632 Msa1178920:CDS
GATACATGTGTGCTAAAGGT+TGG 0.548162 8_1:+11807456 Msa1178920:CDS
GGAATGTAACACTCGGCAAA+GGG 0.548493 8_1:-11807329 None:intergenic
AAAGGGTCAGAACCAGAAAA+GGG 0.549984 8_1:+11802434 Msa1178920:CDS
CTCCCAAAGTTCAAGTCCAC+CGG 0.550193 8_1:-11802801 None:intergenic
GTTGCATTTGTACTTTATGG+TGG 0.551687 8_1:+11802624 Msa1178920:CDS
AGGAATGTAACACTCGGCAA+AGG 0.554566 8_1:-11807330 None:intergenic
GAATCAAGTTACCTTTGTGA+GGG 0.557059 8_1:+11807708 Msa1178920:CDS
CTCATGGTTTCCACTAATGG+TGG 0.558410 8_1:+11804676 Msa1178920:CDS
GATGTTATGAGGGTTGCAGC+AGG 0.559067 8_1:+11807623 Msa1178920:CDS
CGCAGGATACTTTGTTTGGG+CGG 0.559130 8_1:+11804424 Msa1178920:CDS
GGTCCTATGCCTGATCCACC+TGG 0.559473 8_1:+11802713 Msa1178920:CDS
ACTAACTTTGTCACCACCAT+CGG 0.561747 8_1:-11807372 None:intergenic
CTTTGATCCGAAGAAGAAAA+GGG 0.562783 8_1:+11802417 Msa1178920:CDS
GCACCAGCTCCAATGGGTGG+TGG 0.563844 8_1:+11804769 Msa1178920:CDS
CGTTACTGGATGGTTCCAAA+AGG 0.564207 8_1:+11807746 Msa1178920:three_prime_UTR
AACAATGTCAATGATACCAA+AGG 0.566328 8_1:+11805406 Msa1178920:CDS
TACCATGATATGGGAGTCGA+GGG 0.566549 8_1:+11806046 Msa1178920:CDS
TTCTTCAATTTCAAACCAGG+TGG 0.569825 8_1:-11802728 None:intergenic
ATTGCTAACTTGGCACGCAT+CGG 0.570105 8_1:+11804452 Msa1178920:CDS
ACAATGTCAATGATACCAAA+GGG 0.570573 8_1:+11805407 Msa1178920:CDS
GCAGCTACAAGTCCTGAGAC+AGG 0.571268 8_1:-11804389 None:intergenic
TGGACTGAATACCATGATAT+GGG 0.579168 8_1:+11806037 Msa1178920:CDS
CCTCGACAATGAAACAGGAA+TGG 0.579478 8_1:+11804343 Msa1178920:CDS
TATGAAGATGACTCGCACTT+GGG 0.579656 8_1:+11805379 Msa1178920:CDS
GCTGCTGACTACTTTGCCGC+AGG 0.579775 8_1:+11804407 Msa1178920:CDS
ACATACTGAGGAAATGAAGC+TGG 0.579803 8_1:-11802674 None:intergenic
GTGTTACAGACCTTCATGCT+GGG 0.580352 8_1:+11804307 Msa1178920:intron
CCCGAGACATTGCTGTTGCA+AGG 0.580720 8_1:+11804896 Msa1178920:CDS
ACATAAGTGCGGATCCCTGA+AGG 0.582865 8_1:-11807500 None:intergenic
AGAATCAAGTTACCTTTGTG+AGG 0.584227 8_1:+11807707 Msa1178920:CDS
AAACAAGATTCAATCCTTCA+GGG 0.585693 8_1:+11807486 Msa1178920:CDS
ACAGGCCGGACTCTAATGCC+AGG 0.586620 8_1:-11804371 None:intergenic
GTTGATTGAAGATGTTATGA+GGG 0.588594 8_1:+11807613 Msa1178920:CDS
GTTGAAGCACCAGCTCCAAT+GGG 0.588758 8_1:+11804763 Msa1178920:CDS
ATACCTCTTGTCGTGATGTG+TGG 0.589412 8_1:+11806017 Msa1178920:CDS
CTACAAGTCCTGAGACAGGC+CGG 0.589884 8_1:-11804385 None:intergenic
AAACCAGGTGGATCAGGCAT+AGG 0.590698 8_1:-11802716 None:intergenic
GAACCATCCAGTAACGGGAG+AGG 0.591346 8_1:-11807739 None:intergenic
AAAGTTAGTTGTCTGAAAGA+TGG 0.594243 8_1:+11807386 Msa1178920:CDS
TTATTATTCCACATTCGATG+GGG 0.597825 8_1:+11804710 Msa1178920:CDS
TTCTTACCGGTACTATCGAG+AGG 0.598025 8_1:+11807824 Msa1178920:three_prime_UTR
CACTAATGGTGGAAATAAGG+CGG 0.599508 8_1:+11804687 Msa1178920:CDS
GAAATTGATCCTAATGCCGA+TGG 0.600115 8_1:+11807356 Msa1178920:CDS
AGTCCACACATCACGACAAG+AGG 0.600708 8_1:-11806020 None:intergenic
GCCAACCTGCTAGAAGGTAG+AGG 0.602621 8_1:+11807548 Msa1178920:CDS
ATGTGCTCCACCCAGCATGA+AGG 0.609066 8_1:-11804317 None:intergenic
TGTCAATGATACCAAAGGGA+GGG 0.611058 8_1:+11805411 Msa1178920:CDS
CAAATTCAGATTCCAGTGAG+TGG 0.611840 8_1:+11807997 Msa1178920:three_prime_UTR
TTTAGGAAGAGATTGTGGGG+TGG 0.612276 8_1:+11802848 Msa1178920:CDS
TTCAAAAGGAATGTAACACT+CGG 0.613347 8_1:-11807336 None:intergenic
AAGGCAATTGTAAACATCGG+TGG 0.613847 8_1:+11804823 Msa1178920:CDS
CGGCCTTGATTGGTCACCAG+AGG 0.614675 8_1:+11805448 Msa1178920:CDS
GTGGTGGAGGAGGACCAGAT+TGG 0.615784 8_1:+11804785 Msa1178920:CDS
TATTATTCCACATTCGATGG+GGG 0.616054 8_1:+11804711 Msa1178920:CDS
ATTAAGGCAATTGTAAACAT+CGG 0.616704 8_1:+11804820 Msa1178920:CDS
AATCAAGTTACCTTTGTGAG+GGG 0.617198 8_1:+11807709 Msa1178920:exon
GGTGGACTTGAACTTTGGGA+GGG 0.617610 8_1:+11802803 Msa1178920:CDS
ATACCATGATATGGGAGTCG+AGG 0.618174 8_1:+11806045 Msa1178920:CDS
TGCGGGATCAAACACTAAGT+CGG 0.618626 8_1:+11804635 Msa1178920:CDS
GAGTGGCGAAACAGGAAGCA+AGG 0.618828 8_1:+11808014 Msa1178920:three_prime_UTR
TCCTGAACTTAGAACTGGAA+CGG 0.619565 8_1:-11807435 None:intergenic
CCTTTAGAGAAATGAAAGAG+TGG 0.625888 8_1:-11807883 None:intergenic
TTGTTTAGGAAGAGATTGTG+GGG 0.629813 8_1:+11802845 Msa1178920:CDS
ATGTGTGCTAAAGGTTGGCG+CGG 0.634152 8_1:+11807461 Msa1178920:CDS
GTGGATCCTCTCGATAGTAC+CGG 0.638930 8_1:-11807830 None:intergenic
GTGGACTTGAACTTTGGGAG+GGG 0.645485 8_1:+11802804 Msa1178920:CDS
CTTGAGTGTCAAGCATCCAG+TGG 0.649701 8_1:+11802757 Msa1178920:CDS
GAAGCACCAGCTCCAATGGG+TGG 0.650096 8_1:+11804766 Msa1178920:CDS
CCTTCTAGCAGGTTGGCTGG+AGG 0.650840 8_1:-11807542 None:intergenic
CGCCCAAACAAAGTATCCTG+CGG 0.650887 8_1:-11804423 None:intergenic
GTGTTCCAAAGGCTATAGCA+GGG 0.651360 8_1:+11804857 Msa1178920:CDS
TTTGAGAGAAGAAATTGATG+GGG 0.652309 8_1:-11802307 None:intergenic
GAAACAGGAATGGATCCACC+TGG 0.653090 8_1:+11804353 Msa1178920:CDS
TTACAGACCTTCATGCTGGG+TGG 0.657680 8_1:+11804310 Msa1178920:intron
AGAGAAGATTTCCATATCAG+GGG 0.659632 8_1:-11807255 None:intergenic
GGATGGTTCCAAAAGGAGAG+AGG 0.665716 8_1:+11807753 Msa1178920:three_prime_UTR
AGGAATCCAACCCCTCACAA+AGG 0.672701 8_1:-11807719 None:intergenic
ATGTCAATGATACCAAAGGG+AGG 0.678379 8_1:+11805410 Msa1178920:CDS
GCCAAAGGAGAAGAATTGGG+AGG 0.678687 8_1:+11807647 Msa1178920:CDS
GTTCCCGGGATTGTTACCGG+TGG 0.680821 8_1:+11802785 Msa1178920:CDS
ATAGCCTCAGTGACATACTG+AGG 0.682133 8_1:-11802686 None:intergenic
TGGTCACCAGAGGAAAGCTG+TGG 0.687949 8_1:+11805458 Msa1178920:CDS
TCACAAGGGCGATTGCACCA+GGG 0.688041 8_1:+11805312 Msa1178920:intron
CATATTCTCGAACATAAGTG+CGG 0.688532 8_1:-11807511 None:intergenic
CATGTTGCAATGTTTGAATG+CGG 0.688558 8_1:-11805355 None:intergenic
GAAGGTAGAGGAACACAAAG+CGG 0.691848 8_1:+11807560 Msa1178920:CDS
TTAAGAAGAAGAGTACTAGG+TGG 0.695244 8_1:+11802570 Msa1178920:CDS
GGCCGGACTCTAATGCCAGG+TGG 0.698938 8_1:-11804368 None:intergenic
ATTGATCCTAATGCCGATGG+TGG 0.700702 8_1:+11807359 Msa1178920:CDS
ATTCTGCTTTACTCGCAAAG+GGG 0.702110 8_1:-11807854 None:intergenic
ATTTCCTCAGTATGTCACTG+AGG 0.706751 8_1:+11802682 Msa1178920:CDS
GCTCCGAAAATGATGGCGCG+TGG 0.724137 8_1:+11806136 Msa1178920:CDS
AATATCATTTCAGAACACTG+AGG 0.773968 8_1:+11804517 Msa1178920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATAATAATAATATTTAT+TGG - chr8_1:11807788-11807807 None:intergenic 0.0%
!! CAAAATCAATTATTAAAATA+AGG - chr8_1:11804546-11804565 None:intergenic 10.0%
!!! TACTAGTATTTAATTTTAAA+TGG + chr8_1:11806641-11806660 Msa1178920:intron 10.0%
!!! ACTAGTATTTAATTTTAAAT+GGG + chr8_1:11806642-11806661 Msa1178920:intron 10.0%
!! ATTCATAATGATTATTTATT+TGG - chr8_1:11807067-11807086 None:intergenic 10.0%
!!! AATAGTATTTTTATTTTTCT+TGG - chr8_1:11807153-11807172 None:intergenic 10.0%
!!! TTTTGCTTTTTATTATTTTT+TGG + chr8_1:11808131-11808150 Msa1178920:three_prime_UTR 10.0%
!!! AAAACAACTTTTTTTTTTCT+GGG - chr8_1:11802341-11802360 None:intergenic 15.0%
!!! AAAAACAACTTTTTTTTTTC+TGG - chr8_1:11802342-11802361 None:intergenic 15.0%
!!! CATTTTATTTGATTTGATTA+TGG + chr8_1:11803132-11803151 Msa1178920:intron 15.0%
!! TATATATTTATAACTTTGCT+TGG + chr8_1:11803404-11803423 Msa1178920:intron 15.0%
!!! TGTTAATATGTTTCTATTAT+TGG + chr8_1:11803664-11803683 Msa1178920:intron 15.0%
!! TAATAATAACTTAATTGATC+AGG + chr8_1:11804612-11804631 Msa1178920:intron 15.0%
!! AATAAAACAAATGTTAACTA+TGG + chr8_1:11805536-11805555 Msa1178920:CDS 15.0%
!! CAAAACTTAAAATTGATATA+GGG + chr8_1:11805634-11805653 Msa1178920:intron 15.0%
!! TGTTTGAATTAACTTATTTA+AGG + chr8_1:11805659-11805678 Msa1178920:intron 15.0%
!! AAATAAAAATACTATTCAGT+TGG + chr8_1:11807157-11807176 Msa1178920:intron 15.0%
!! TTGAATAGGTAATAAAAATA+AGG - chr8_1:11807185-11807204 None:intergenic 15.0%
!!! ATATTTTATAAGATTGAATG+GGG - chr8_1:11808226-11808245 None:intergenic 15.0%
!!! GATATTTTATAAGATTGAAT+GGG - chr8_1:11808227-11808246 None:intergenic 15.0%
!!! TGATATTTTATAAGATTGAA+TGG - chr8_1:11808228-11808247 None:intergenic 15.0%
!!! TCTTCTTTTTTCTGAATTTT+TGG - chr8_1:11802479-11802498 None:intergenic 20.0%
!!! TTATTTGATTTGATTATGGT+TGG + chr8_1:11803136-11803155 Msa1178920:intron 20.0%
!!! AGAAAGTTTGTTCTTATAAA+AGG + chr8_1:11803361-11803380 Msa1178920:intron 20.0%
!! TATATGTTTGACATTTGATT+TGG + chr8_1:11803584-11803603 Msa1178920:intron 20.0%
!!! TCATTTATTTTGTCTGTTAT+TGG + chr8_1:11803796-11803815 Msa1178920:intron 20.0%
!!! ATTTTCTTCATTTCATGAAA+TGG + chr8_1:11804740-11804759 Msa1178920:CDS 20.0%
!!! TTTTCTTCATTTCATGAAAT+GGG + chr8_1:11804741-11804760 Msa1178920:CDS 20.0%
!! TACAATTGCCTTAATATATT+TGG - chr8_1:11804815-11804834 None:intergenic 20.0%
!! TTCATAGTTTAAACAATAGA+CGG - chr8_1:11805045-11805064 None:intergenic 20.0%
!! TAACATTCTCAAATTATTAC+CGG - chr8_1:11805083-11805102 None:intergenic 20.0%
!! TTCAGTATCTAAATTGAATT+TGG + chr8_1:11805272-11805291 Msa1178920:intron 20.0%
!! GCAAAACTTAAAATTGATAT+AGG + chr8_1:11805633-11805652 Msa1178920:intron 20.0%
!! TATTTGTAGTGTTCATATTT+AGG - chr8_1:11806205-11806224 None:intergenic 20.0%
!! AATATGAACACTACAAATAT+TGG + chr8_1:11806206-11806225 Msa1178920:CDS 20.0%
!! AAATTTCTGAATGAATTCTT+CGG + chr8_1:11806316-11806335 Msa1178920:intron 20.0%
!! TTAATTAAGCACTTATAACT+TGG + chr8_1:11806445-11806464 Msa1178920:intron 20.0%
!!! TATTTTAACAACTTCAGATA+TGG + chr8_1:11806850-11806869 Msa1178920:intron 20.0%
!!! ATCTGTCTAAAGTTAAATAA+CGG + chr8_1:11806900-11806919 Msa1178920:intron 20.0%
!! CTTATAAATATAAGCTCTTT+CGG - chr8_1:11807303-11807322 None:intergenic 20.0%
!! TGTATTCTGATATCTTTAAA+TGG + chr8_1:11807678-11807697 Msa1178920:CDS 20.0%
!!! AAAACATTAGATTTGTTGTA+TGG + chr8_1:11808044-11808063 Msa1178920:three_prime_UTR 20.0%
!!! TTTGTTGTATGGTAATTTTT+TGG + chr8_1:11808055-11808074 Msa1178920:three_prime_UTR 20.0%
!!! AGCTATGATTATTTTTGTGA+AGG - chr8_1:11802059-11802078 None:intergenic 25.0%
! AATTTAAGCGAAAATGAAGA+AGG - chr8_1:11802261-11802280 None:intergenic 25.0%
!!! TTTTGAGAGAAGAAATTGAT+GGG - chr8_1:11802311-11802330 None:intergenic 25.0%
!!! TTTTTGAGAGAAGAAATTGA+TGG - chr8_1:11802312-11802331 None:intergenic 25.0%
!!! TTATTTTTCTCAACAAACTC+TGG + chr8_1:11802368-11802387 Msa1178920:five_prime_UTR 25.0%
!! TATTTTTCTCAACAAACTCT+GGG + chr8_1:11802369-11802388 Msa1178920:five_prime_UTR 25.0%
! AAAGAACAAGAAGAAAAACA+AGG + chr8_1:11802532-11802551 Msa1178920:CDS 25.0%
!!! TTTTTAAGAAGAAGAGTACT+AGG + chr8_1:11802567-11802586 Msa1178920:CDS 25.0%
!!! CTTTTGGAGAAGTTTATAAA+AGG + chr8_1:11802873-11802892 Msa1178920:CDS 25.0%
!! TTGTTTGTCTTAATTTGATG+AGG + chr8_1:11802951-11802970 Msa1178920:intron 25.0%
!! TGTTAGCATGTTTCTATAAT+TGG + chr8_1:11803205-11803224 Msa1178920:intron 25.0%
!!! TGTGTTTTTATAGTCTTGTT+TGG + chr8_1:11803467-11803486 Msa1178920:intron 25.0%
!!! TTGACATTTGATTTGGTTAT+TGG + chr8_1:11803591-11803610 Msa1178920:intron 25.0%
! TAAATGAAGATCAGAATCAA+AGG - chr8_1:11803895-11803914 None:intergenic 25.0%
! TTTGATTCTGATCTTCATTT+AGG + chr8_1:11803894-11803913 Msa1178920:intron 25.0%
! ACTGTTCAATTTGAAAGTAA+AGG + chr8_1:11804050-11804069 Msa1178920:intron 25.0%
! CTGTTCAATTTGAAAGTAAA+GGG + chr8_1:11804051-11804070 Msa1178920:intron 25.0%
! TGAAGAAAAAACTATGTACA+TGG + chr8_1:11804478-11804497 Msa1178920:CDS 25.0%
!!! AGTGTTCTGAAATAAAAACT+CGG - chr8_1:11804571-11804590 None:intergenic 25.0%
!! TTGGTGTTCCAAATATATTA+AGG + chr8_1:11804804-11804823 Msa1178920:CDS 25.0%
! ATTAAGGCAATTGTAAACAT+CGG + chr8_1:11804820-11804839 Msa1178920:CDS 25.0%
! AATTTGTGTTTCCAATTCAA+AGG - chr8_1:11805204-11805223 None:intergenic 25.0%
! TTTCGTGTTATATATCACAA+GGG + chr8_1:11805298-11805317 Msa1178920:intron 25.0%
! ACAAGAAAACTGGTAAAATA+AGG - chr8_1:11805928-11805947 None:intergenic 25.0%
!! TGATTTTGAACTCACAAATA+TGG - chr8_1:11806381-11806400 None:intergenic 25.0%
!! AACTGTTTTATAAGCTATAC+TGG + chr8_1:11806554-11806573 Msa1178920:intron 25.0%
! ATCCAAACAGATAATTTCTT+TGG + chr8_1:11806668-11806687 Msa1178920:intron 25.0%
! ATCCAAAGAAATTATCTGTT+TGG - chr8_1:11806673-11806692 None:intergenic 25.0%
! AACAGATAATTTCTTTGGAT+TGG + chr8_1:11806673-11806692 Msa1178920:intron 25.0%
! TTTGACAGAAATTATGACTT+TGG + chr8_1:11806748-11806767 Msa1178920:intron 25.0%
! ATCCAAACTGTATGTTTATA+TGG - chr8_1:11806777-11806796 None:intergenic 25.0%
! CTAAATTTCATCATGAATGA+TGG - chr8_1:11806988-11807007 None:intergenic 25.0%
! AAGACATCAATCAATTGAAT+AGG - chr8_1:11807199-11807218 None:intergenic 25.0%
! TTTGCGATTTGAAATTAGGA+AGG - chr8_1:11802164-11802183 None:intergenic 30.0%
TATTCGCAAATTGCAGTATA+CGG - chr8_1:11802225-11802244 None:intergenic 30.0%
TTTGAGAGAAGAAATTGATG+GGG - chr8_1:11802310-11802329 None:intergenic 30.0%
!!! TGAATCGATTTTTTGAACCA+TGG + chr8_1:11802394-11802413 Msa1178920:exon 30.0%
TTGGTTGCATTTGTACTTTA+TGG + chr8_1:11802621-11802640 Msa1178920:CDS 30.0%
TCTTTCTTCAATTTCAAACC+AGG - chr8_1:11802734-11802753 None:intergenic 30.0%
! GGTTTGAAATTGAAGAAAGA+AGG + chr8_1:11802734-11802753 Msa1178920:CDS 30.0%
ATTGTTTAGGAAGAGATTGT+GGG + chr8_1:11802844-11802863 Msa1178920:CDS 30.0%
! TGTGTATTTATAGCTTTGCT+TGG + chr8_1:11802916-11802935 Msa1178920:intron 30.0%
! TCTTAATTTGATGAGGTTGA+TGG + chr8_1:11802958-11802977 Msa1178920:intron 30.0%
!! GGTGTTTTTATTGTCTTGTT+TGG + chr8_1:11802979-11802998 Msa1178920:intron 30.0%
! TCTTGTTTGGTATTGTTTAG+TGG + chr8_1:11802992-11803011 Msa1178920:intron 30.0%
! TGGTATTGTTTAGTGGTTTT+TGG + chr8_1:11802999-11803018 Msa1178920:intron 30.0%
!!! TGTTTAGTGGTTTTTGGTAT+TGG + chr8_1:11803005-11803024 Msa1178920:intron 30.0%
! TGCTGTGATTTGAAATTGAA+TGG + chr8_1:11803046-11803065 Msa1178920:intron 30.0%
GAAATTGAATGGTTATGATG+AGG + chr8_1:11803057-11803076 Msa1178920:intron 30.0%
!! TTTGATTTGATTATGGTTGG+TGG + chr8_1:11803139-11803158 Msa1178920:intron 30.0%
! TTGATTTGATTATGGTTGGT+GGG + chr8_1:11803140-11803159 Msa1178920:intron 30.0%
! TAGCATGTTTCTATAATTGG+TGG + chr8_1:11803208-11803227 Msa1178920:intron 30.0%
! GGAAAGGAACTTATGTTTTA+TGG + chr8_1:11803247-11803266 Msa1178920:intron 30.0%
!!! TCTTGTTTGGTTTTGTTTAG+TGG + chr8_1:11803480-11803499 Msa1178920:intron 30.0%
! TTTGTGAGTGTGTTGTTATT+TGG + chr8_1:11803503-11803522 Msa1178920:intron 30.0%
GGAATTGATTGATTATGATG+AGG + chr8_1:11803524-11803543 Msa1178920:intron 30.0%
TTGATTGATTATGATGAGGA+TGG + chr8_1:11803528-11803547 Msa1178920:intron 30.0%
!! CATTTGATTTGGTTATTGGT+TGG + chr8_1:11803595-11803614 Msa1178920:intron 30.0%
TCTATTATTGGTGAAGACAT+TGG + chr8_1:11803676-11803695 Msa1178920:intron 30.0%
GATAATGTGATTGCTTGATA+TGG + chr8_1:11803744-11803763 Msa1178920:intron 30.0%
! AATTTTTGCTCTTTGCTACT+TGG + chr8_1:11803769-11803788 Msa1178920:intron 30.0%
! GTCTGTTATTGGATTTTACT+TGG + chr8_1:11803807-11803826 Msa1178920:intron 30.0%
TTACTTGGAATAAGAAAGCT+TGG + chr8_1:11803822-11803841 Msa1178920:intron 30.0%
GATCAGAATCAAAGGTTTAA+AGG - chr8_1:11803887-11803906 None:intergenic 30.0%
ATTGTGAGTACTTGATTGAT+TGG + chr8_1:11803984-11804003 Msa1178920:intron 30.0%
CAGATATTATTTGTCTCACA+AGG - chr8_1:11804106-11804125 None:intergenic 30.0%
AATATCATTTCAGAACACTG+AGG + chr8_1:11804517-11804536 Msa1178920:CDS 30.0%
ATAACTTAATTGATCAGGTG+CGG + chr8_1:11804617-11804636 Msa1178920:intron 30.0%
AAAAAGCAACATAGAACTCA+TGG + chr8_1:11804660-11804679 Msa1178920:CDS 30.0%
GTTATTATTCCACATTCGAT+GGG + chr8_1:11804709-11804728 Msa1178920:CDS 30.0%
TTATTATTCCACATTCGATG+GGG + chr8_1:11804710-11804729 Msa1178920:CDS 30.0%
! ATATATTTGGAACACCAATC+TGG - chr8_1:11804802-11804821 None:intergenic 30.0%
TGCAAGGTATATCTTCTTTA+TGG + chr8_1:11804912-11804931 Msa1178920:intron 30.0%
ACACAAATTCTCATTGCATT+TGG + chr8_1:11805215-11805234 Msa1178920:intron 30.0%
CTTTCGTGTTATATATCACA+AGG + chr8_1:11805297-11805316 Msa1178920:intron 30.0%
ATATCGTTATCTAAAAACCC+TGG - chr8_1:11805332-11805351 None:intergenic 30.0%
AACAATGTCAATGATACCAA+AGG + chr8_1:11805406-11805425 Msa1178920:CDS 30.0%
ACAATGTCAATGATACCAAA+GGG + chr8_1:11805407-11805426 Msa1178920:CDS 30.0%
TATGGAAGAATGATATCGTT+TGG + chr8_1:11805554-11805573 Msa1178920:CDS 30.0%
!! AGATCGATATTGTTGACTTT+CGG + chr8_1:11805606-11805625 Msa1178920:intron 30.0%
! ACTTATTTAAGGTCATCTAC+CGG + chr8_1:11805670-11805689 Msa1178920:intron 30.0%
AATTAAGCTGTTTATCCAAC+AGG + chr8_1:11805876-11805895 Msa1178920:intron 30.0%
ATTAAGCTGTTTATCCAACA+GGG + chr8_1:11805877-11805896 Msa1178920:intron 30.0%
CACCATATAAACATACAGTT+TGG + chr8_1:11806772-11806791 Msa1178920:intron 30.0%
! ATCATTATTTTCTCTCACCT+CGG + chr8_1:11806802-11806821 Msa1178920:intron 30.0%
!! GTAGACTAAACTTATTTCTG+AGG - chr8_1:11806950-11806969 None:intergenic 30.0%
! TATTTGGAACATATCAAGAG+CGG - chr8_1:11807051-11807070 None:intergenic 30.0%
CAACTGTTAATAATATCGAC+AGG + chr8_1:11807222-11807241 Msa1178920:intron 30.0%
ATGGAAATCTTCTCTCTATA+TGG + chr8_1:11807263-11807282 Msa1178920:CDS 30.0%
TAAATATAAGCTCTTTCGGT+TGG - chr8_1:11807299-11807318 None:intergenic 30.0%
TTCAAAAGGAATGTAACACT+CGG - chr8_1:11807339-11807358 None:intergenic 30.0%
GCATTAGGATCAATTTCAAA+AGG - chr8_1:11807353-11807372 None:intergenic 30.0%
AAAGTTAGTTGTCTGAAAGA+TGG + chr8_1:11807386-11807405 Msa1178920:CDS 30.0%
AAAACAAGATTCAATCCTTC+AGG + chr8_1:11807485-11807504 Msa1178920:CDS 30.0%
AAACAAGATTCAATCCTTCA+GGG + chr8_1:11807486-11807505 Msa1178920:CDS 30.0%
GTTGATTGAAGATGTTATGA+GGG + chr8_1:11807613-11807632 Msa1178920:CDS 30.0%
CAAAGGTAACTTGATTCTAT+CGG - chr8_1:11807705-11807724 None:intergenic 30.0%
! TGTGTCTATTTCTTTCTTAC+CGG + chr8_1:11807811-11807830 Msa1178920:three_prime_UTR 30.0%
! GCGATTTGCGATTTGAAATT+AGG - chr8_1:11802168-11802187 None:intergenic 35.0%
CTTTGATCCGAAGAAGAAAA+GGG + chr8_1:11802417-11802436 Msa1178920:CDS 35.0%
!! TTAAGAAGAAGAGTACTAGG+TGG + chr8_1:11802570-11802589 Msa1178920:CDS 35.0%
GTTGCATTTGTACTTTATGG+TGG + chr8_1:11802624-11802643 Msa1178920:CDS 35.0%
TTCTTCAATTTCAAACCAGG+TGG - chr8_1:11802731-11802750 None:intergenic 35.0%
GATTGTTTAGGAAGAGATTG+TGG + chr8_1:11802843-11802862 Msa1178920:CDS 35.0%
TTGTTTAGGAAGAGATTGTG+GGG + chr8_1:11802845-11802864 Msa1178920:CDS 35.0%
TTGAATGGTTATGATGAGGA+TGG + chr8_1:11803061-11803080 Msa1178920:intron 35.0%
AGACACTGGTAAATTTGGAA+AGG + chr8_1:11803231-11803250 Msa1178920:intron 35.0%
! TATGGTATTGTTGCTTGAGA+TGG + chr8_1:11803265-11803284 Msa1178920:intron 35.0%
GATGGTTAATTCTTGCTCTT+TGG + chr8_1:11803283-11803302 Msa1178920:intron 35.0%
ATAACTTTGCTTGGTTGTGT+TGG + chr8_1:11803413-11803432 Msa1178920:intron 35.0%
ATTATGATGAGGATGGTGAT+TGG + chr8_1:11803535-11803554 Msa1178920:intron 35.0%
!! ACACTTGTCGATTTAATGCT+AGG + chr8_1:11803631-11803650 Msa1178920:intron 35.0%
TCGATTTAATGCTAGGTTGT+TGG + chr8_1:11803638-11803657 Msa1178920:intron 35.0%
TTATTGGTGAAGACATTGGA+AGG + chr8_1:11803680-11803699 Msa1178920:intron 35.0%
AAGACATTGGAAGGATGATT+TGG + chr8_1:11803689-11803708 Msa1178920:intron 35.0%
! ATTGGAAGGATGATTTGGAA+GGG + chr8_1:11803694-11803713 Msa1178920:intron 35.0%
ACAGTGATCTAACATTACAC+AGG - chr8_1:11803861-11803880 None:intergenic 35.0%
CCTTATCTGGACAATCAATT+AGG - chr8_1:11804171-11804190 None:intergenic 35.0%
CCTAATTGATTGTCCAGATA+AGG + chr8_1:11804168-11804187 Msa1178920:intron 35.0%
! ACTGTGTTATAAGCCTTATC+TGG - chr8_1:11804184-11804203 None:intergenic 35.0%
GACAAATATTGCACTAGTGA+TGG - chr8_1:11804210-11804229 None:intergenic 35.0%
ACCATTTCTACGTCTATGAT+GGG - chr8_1:11804260-11804279 None:intergenic 35.0%
TACCATTTCTACGTCTATGA+TGG - chr8_1:11804261-11804280 None:intergenic 35.0%
GGTCTGTAACACACAAAAAT+AGG - chr8_1:11804299-11804318 None:intergenic 35.0%
TAACTTAATTGATCAGGTGC+GGG + chr8_1:11804618-11804637 Msa1178920:intron 35.0%
! TTCCACTAATGGTGGAAATA+AGG + chr8_1:11804684-11804703 Msa1178920:CDS 35.0%
GGTTATTATTCCACATTCGA+TGG + chr8_1:11804708-11804727 Msa1178920:CDS 35.0%
TATTATTCCACATTCGATGG+GGG + chr8_1:11804711-11804730 Msa1178920:CDS 35.0%
!!! ACCATTTTTAGGTGTTCCAA+AGG + chr8_1:11804846-11804865 Msa1178920:CDS 35.0%
ATGTAACCTAGTAACTAGCA+TGG - chr8_1:11804938-11804957 None:intergenic 35.0%
!! AGGTTACATGTTGACTTGTA+TGG + chr8_1:11804949-11804968 Msa1178920:intron 35.0%
!! GGTTACATGTTGACTTGTAT+GGG + chr8_1:11804950-11804969 Msa1178920:intron 35.0%
GAGTATAATACTGTTGAACC+AGG - chr8_1:11804981-11805000 None:intergenic 35.0%
AAGATCTCTCTCCTTTGAAT+TGG + chr8_1:11805190-11805209 Msa1178920:intron 35.0%
CATGTTGCAATGTTTGAATG+CGG - chr8_1:11805358-11805377 None:intergenic 35.0%
!! GATCGATATTGTTGACTTTC+GGG + chr8_1:11805607-11805626 Msa1178920:intron 35.0%
ATGAGACAGAACAAGAAAAC+TGG - chr8_1:11805938-11805957 None:intergenic 35.0%
! ACACTCAGGTTTTTGTTAAC+AGG + chr8_1:11805967-11805986 Msa1178920:intron 35.0%
! CACTCAGGTTTTTGTTAACA+GGG + chr8_1:11805968-11805987 Msa1178920:intron 35.0%
TTGTTAACAGGGTGCAATTA+AGG + chr8_1:11805979-11805998 Msa1178920:intron 35.0%
TGTTAACAGGGTGCAATTAA+GGG + chr8_1:11805980-11805999 Msa1178920:intron 35.0%
!! CAAGAGGTATTTGCAACATT+GGG - chr8_1:11806007-11806026 None:intergenic 35.0%
!! ACAAGAGGTATTTGCAACAT+TGG - chr8_1:11806008-11806027 None:intergenic 35.0%
TGGACTGAATACCATGATAT+GGG + chr8_1:11806037-11806056 Msa1178920:CDS 35.0%
GAACATAAAGTTTACACAGC+TGG + chr8_1:11806085-11806104 Msa1178920:CDS 35.0%
GGTAGTGATCATTTCTCTTA+TGG + chr8_1:11806157-11806176 Msa1178920:CDS 35.0%
CAAATATTGGTCAAACCCAT+TGG + chr8_1:11806219-11806238 Msa1178920:CDS 35.0%
AATCTCACTTTGTCTCCAAT+GGG - chr8_1:11806237-11806256 None:intergenic 35.0%
AAATCTCACTTTGTCTCCAA+TGG - chr8_1:11806238-11806257 None:intergenic 35.0%
TTTCTGAATGAATTCTTCGG+TGG + chr8_1:11806319-11806338 Msa1178920:intron 35.0%
CATTCGTTGACGATACTTAT+AGG + chr8_1:11806403-11806422 Msa1178920:intron 35.0%
GATACTTATAGGCTCTGTTT+AGG + chr8_1:11806414-11806433 Msa1178920:intron 35.0%
ATACTAGTATAAGCGCTTGT+GGG - chr8_1:11806630-11806649 None:intergenic 35.0%
AATACTAGTATAAGCGCTTG+TGG - chr8_1:11806631-11806650 None:intergenic 35.0%
AACAACTTCAGATATGGTGT+TGG + chr8_1:11806856-11806875 Msa1178920:intron 35.0%
GGTGTATCTAATACTGTGTT+TGG - chr8_1:11806929-11806948 None:intergenic 35.0%
AGAGAAGATTTCCATATCAG+GGG - chr8_1:11807258-11807277 None:intergenic 35.0%
GAGAGAAGATTTCCATATCA+GGG - chr8_1:11807259-11807278 None:intergenic 35.0%
AGAGAGAAGATTTCCATATC+AGG - chr8_1:11807260-11807279 None:intergenic 35.0%
ATCTTCTCTCTATATGGAGT+TGG + chr8_1:11807269-11807288 Msa1178920:CDS 35.0%
ATGTATCCTGAACTTAGAAC+TGG - chr8_1:11807443-11807462 None:intergenic 35.0%
CATATTCTCGAACATAAGTG+CGG - chr8_1:11807514-11807533 None:intergenic 35.0%
GGTGCTCATGTTGATATAAT+GGG + chr8_1:11807581-11807600 Msa1178920:CDS 35.0%
! CGTTGATTGAAGATGTTATG+AGG + chr8_1:11807612-11807631 Msa1178920:CDS 35.0%
AGAATCAAGTTACCTTTGTG+AGG + chr8_1:11807707-11807726 Msa1178920:CDS 35.0%
GAATCAAGTTACCTTTGTGA+GGG + chr8_1:11807708-11807727 Msa1178920:CDS 35.0%
AATCAAGTTACCTTTGTGAG+GGG + chr8_1:11807709-11807728 Msa1178920:exon 35.0%
! CCTTTAGAGAAATGAAAGAG+TGG - chr8_1:11807886-11807905 None:intergenic 35.0%
CCACTCTTTCATTTCTCTAA+AGG + chr8_1:11807883-11807902 Msa1178920:three_prime_UTR 35.0%
GAAATTCTGAGTGCATCTTA+TGG - chr8_1:11807964-11807983 None:intergenic 35.0%
TAAGATGCACTCAGAATTTC+TGG + chr8_1:11807964-11807983 Msa1178920:three_prime_UTR 35.0%
CATATTTGTCAGATGCTTCA+TGG + chr8_1:11808082-11808101 Msa1178920:three_prime_UTR 35.0%
TTTGTGAAGGTAGTGAGAGA+AGG - chr8_1:11802046-11802065 None:intergenic 40.0%
AATATTAGCATCGCACAGAG+AGG - chr8_1:11802097-11802116 None:intergenic 40.0%
GCTTTGATCCGAAGAAGAAA+AGG + chr8_1:11802416-11802435 Msa1178920:CDS 40.0%
! GTTCTGACCCTTTTCTTCTT+CGG - chr8_1:11802427-11802446 None:intergenic 40.0%
AAAAGGGTCAGAACCAGAAA+AGG + chr8_1:11802433-11802452 Msa1178920:CDS 40.0%
AAAGGGTCAGAACCAGAAAA+GGG + chr8_1:11802434-11802453 Msa1178920:CDS 40.0%
! TTTTCGCTACTACCCTTTTC+TGG - chr8_1:11802449-11802468 None:intergenic 40.0%
CAAGAAGAAAAACAAGGACG+AGG + chr8_1:11802538-11802557 Msa1178920:CDS 40.0%
! CTTGTGTTGACAGTTGTTGT+TGG + chr8_1:11802594-11802613 Msa1178920:CDS 40.0%
!! GACAGTTGTTGTTGGTTTGT+TGG + chr8_1:11802602-11802621 Msa1178920:CDS 40.0%
ACATACTGAGGAAATGAAGC+TGG - chr8_1:11802677-11802696 None:intergenic 40.0%
ATTTCCTCAGTATGTCACTG+AGG + chr8_1:11802682-11802701 Msa1178920:CDS 40.0%
TATGTCACTGAGGCTATAAC+TGG + chr8_1:11802692-11802711 Msa1178920:CDS 40.0%
AATTTCAAACCAGGTGGATC+AGG - chr8_1:11802725-11802744 None:intergenic 40.0%
AGTGTGCTGAAGGATTGTTT+AGG + chr8_1:11802831-11802850 Msa1178920:CDS 40.0%
! ATAGCTTTGCTTGGTTGTGT+TGG + chr8_1:11802925-11802944 Msa1178920:intron 40.0%
TCTATAATTGGTGGAGACAC+TGG + chr8_1:11803217-11803236 Msa1178920:intron 40.0%
! ATTCTTGCTCTTTGGAGACT+TGG + chr8_1:11803291-11803310 Msa1178920:intron 40.0%
!! TTATTGGTTGGTGAGCTGTT+TGG + chr8_1:11803607-11803626 Msa1178920:intron 40.0%
! CATTGGAAGGATGATTTGGA+AGG + chr8_1:11803693-11803712 Msa1178920:intron 40.0%
! GAACTCCTCTTTTGTGGTAT+TGG + chr8_1:11803716-11803735 Msa1178920:intron 40.0%
TTTCCATGTCCATTTGTGAG+TGG + chr8_1:11804023-11804042 Msa1178920:intron 40.0%
ACAGTACTTCCACTCACAAA+TGG - chr8_1:11804035-11804054 None:intergenic 40.0%
TCCCATCATAGACGTAGAAA+TGG + chr8_1:11804256-11804275 Msa1178920:intron 40.0%
CATTCCTGTTTCATTGTCGA+GGG - chr8_1:11804345-11804364 None:intergenic 40.0%
TGTACATGGCTGCATATGAT+TGG + chr8_1:11804492-11804511 Msa1178920:CDS 40.0%
GAACTCATGGTTTCCACTAA+TGG + chr8_1:11804673-11804692 Msa1178920:CDS 40.0%
! CACTAATGGTGGAAATAAGG+CGG + chr8_1:11804687-11804706 Msa1178920:CDS 40.0%
AAGGCAATTGTAAACATCGG+TGG + chr8_1:11804823-11804842 Msa1178920:CDS 40.0%
!! AACATCGGTGGACCATTTTT+AGG + chr8_1:11804835-11804854 Msa1178920:CDS 40.0%
!! GCCTTTGGAACACCTAAAAA+TGG - chr8_1:11804850-11804869 None:intergenic 40.0%
TTATGGCCATGCTAGTTACT+AGG + chr8_1:11804929-11804948 Msa1178920:intron 40.0%
TTATGAAGATGACTCGCACT+TGG + chr8_1:11805378-11805397 Msa1178920:CDS 40.0%
TATGAAGATGACTCGCACTT+GGG + chr8_1:11805379-11805398 Msa1178920:CDS 40.0%
ATGTCAATGATACCAAAGGG+AGG + chr8_1:11805410-11805429 Msa1178920:CDS 40.0%
TGTCAATGATACCAAAGGGA+GGG + chr8_1:11805411-11805430 Msa1178920:CDS 40.0%
AGTCTCACAAGTGCTTATAC+CGG - chr8_1:11805692-11805711 None:intergenic 40.0%
AAGCTATCATGAAGAGCTTG+TGG - chr8_1:11805739-11805758 None:intergenic 40.0%
TAAGCACACAAGACAATGCA+GGG - chr8_1:11805903-11805922 None:intergenic 40.0%
ATAAGCACACAAGACAATGC+AGG - chr8_1:11805904-11805923 None:intergenic 40.0%
CTCATTTGTACTTGACACTC+AGG + chr8_1:11805953-11805972 Msa1178920:intron 40.0%
! GTGGACTGAATACCATGATA+TGG + chr8_1:11806036-11806055 Msa1178920:CDS 40.0%
! GTTTGTTGCTCCGAAAATGA+TGG + chr8_1:11806129-11806148 Msa1178920:CDS 40.0%
AAGCTATACTGGAGAGCTTA+TGG + chr8_1:11806565-11806584 Msa1178920:intron 40.0%
GGATTGTGTGAGATAGCTTA+TGG - chr8_1:11806609-11806628 None:intergenic 40.0%
!! CTTTGGATTGGCGTTGAAAA+AGG + chr8_1:11806685-11806704 Msa1178920:intron 40.0%
! TTATTTTCTCTCACCTCGGA+TGG + chr8_1:11806806-11806825 Msa1178920:intron 40.0%
GCTAGTAAATATTCCATCCG+AGG - chr8_1:11806822-11806841 None:intergenic 40.0%
TTGGAAAGATGATGACCTGA+GGG - chr8_1:11807134-11807153 None:intergenic 40.0%
!! ATTTCCATATCAGGGGCATT+TGG - chr8_1:11807251-11807270 None:intergenic 40.0%
TATAAGCTCTTTCGGTTGGT+AGG - chr8_1:11807295-11807314 None:intergenic 40.0%
GAAATTGATCCTAATGCCGA+TGG + chr8_1:11807356-11807375 Msa1178920:CDS 40.0%
ACTAACTTTGTCACCACCAT+CGG - chr8_1:11807375-11807394 None:intergenic 40.0%
TCCTGAACTTAGAACTGGAA+CGG - chr8_1:11807438-11807457 None:intergenic 40.0%
TCAGGATACATGTGTGCTAA+AGG + chr8_1:11807452-11807471 Msa1178920:CDS 40.0%
GATACATGTGTGCTAAAGGT+TGG + chr8_1:11807456-11807475 Msa1178920:CDS 40.0%
CGGTGCTCATGTTGATATAA+TGG + chr8_1:11807580-11807599 Msa1178920:CDS 40.0%
AGAAGAATTGGGAGGTGATA+AGG + chr8_1:11807655-11807674 Msa1178920:CDS 40.0%
!!! TTTTGGAACCATCCAGTAAC+GGG - chr8_1:11807747-11807766 None:intergenic 40.0%
!!! CTTTTGGAACCATCCAGTAA+CGG - chr8_1:11807748-11807767 None:intergenic 40.0%
ATTCTGCTTTACTCGCAAAG+GGG - chr8_1:11807857-11807876 None:intergenic 40.0%
CATTCTGCTTTACTCGCAAA+GGG - chr8_1:11807858-11807877 None:intergenic 40.0%
CAAATTCAGATTCCAGTGAG+TGG + chr8_1:11807997-11808016 Msa1178920:three_prime_UTR 40.0%
ACAGAGAGGAACGATGAGAA+GGG - chr8_1:11802083-11802102 None:intergenic 45.0%
TCTTCTTCGGATCAAAGCCA+TGG - chr8_1:11802414-11802433 None:intergenic 45.0%
ATAGCCTCAGTGACATACTG+AGG - chr8_1:11802689-11802708 None:intergenic 45.0%
! CATCCAGTGGTTTTTGTTCC+CGG + chr8_1:11802770-11802789 Msa1178920:CDS 45.0%
! ATCCAGTGGTTTTTGTTCCC+GGG + chr8_1:11802771-11802790 Msa1178920:CDS 45.0%
TTTGTTCCCGGGATTGTTAC+CGG + chr8_1:11802782-11802801 Msa1178920:CDS 45.0%
! TTACCGGTGGACTTGAACTT+TGG + chr8_1:11802798-11802817 Msa1178920:CDS 45.0%
! TACCGGTGGACTTGAACTTT+GGG + chr8_1:11802799-11802818 Msa1178920:CDS 45.0%
TTTAGGAAGAGATTGTGGGG+TGG + chr8_1:11802848-11802867 Msa1178920:CDS 45.0%
! AGATTGTGGGGTGGTACTTT+TGG + chr8_1:11802857-11802876 Msa1178920:CDS 45.0%
TATGATGAGGATGGTGATCG+TGG + chr8_1:11803070-11803089 Msa1178920:intron 45.0%
GGTGGAGACACTGGTAAATT+TGG + chr8_1:11803226-11803245 Msa1178920:intron 45.0%
AAGCGCCAATACCACAAAAG+AGG - chr8_1:11803724-11803743 None:intergenic 45.0%
CTTCCACTCACAAATGGACA+TGG - chr8_1:11804029-11804048 None:intergenic 45.0%
TGTGTTACAGACCTTCATGC+TGG + chr8_1:11804306-11804325 Msa1178920:intron 45.0%
GTGTTACAGACCTTCATGCT+GGG + chr8_1:11804307-11804326 Msa1178920:intron 45.0%
ATGTCCCTCGACAATGAAAC+AGG + chr8_1:11804338-11804357 Msa1178920:CDS 45.0%
CCATTCCTGTTTCATTGTCG+AGG - chr8_1:11804346-11804365 None:intergenic 45.0%
CCTCGACAATGAAACAGGAA+TGG + chr8_1:11804343-11804362 Msa1178920:CDS 45.0%
TTGCCGCAGGATACTTTGTT+TGG + chr8_1:11804420-11804439 Msa1178920:CDS 45.0%
! TGCCGCAGGATACTTTGTTT+GGG + chr8_1:11804421-11804440 Msa1178920:CDS 45.0%
TGCGTGCCAAGTTAGCAATT+AGG - chr8_1:11804451-11804470 None:intergenic 45.0%
ATTGCTAACTTGGCACGCAT+CGG + chr8_1:11804452-11804471 Msa1178920:CDS 45.0%
TGCGGGATCAAACACTAAGT+CGG + chr8_1:11804635-11804654 Msa1178920:CDS 45.0%
CTCATGGTTTCCACTAATGG+TGG + chr8_1:11804676-11804695 Msa1178920:CDS 45.0%
!! CGCCTTATTTCCACCATTAG+TGG - chr8_1:11804689-11804708 None:intergenic 45.0%
TACAAAACCCCCATCGAATG+TGG - chr8_1:11804721-11804740 None:intergenic 45.0%
GTGTTCCAAAGGCTATAGCA+GGG + chr8_1:11804857-11804876 Msa1178920:CDS 45.0%
AAAAGCCCTGCTATAGCCTT+TGG - chr8_1:11804865-11804884 None:intergenic 45.0%
ACCTTGCAACAGCAATGTCT+CGG - chr8_1:11804900-11804919 None:intergenic 45.0%
GTGTTTGACACTGACACAAG+CGG - chr8_1:11805106-11805125 None:intergenic 45.0%
GTCAATGATACCAAAGGGAG+GGG + chr8_1:11805412-11805431 Msa1178920:CDS 45.0%
TTTCCTCTGGTGACCAATCA+AGG - chr8_1:11805454-11805473 None:intergenic 45.0%
TGCTTTGCTTTCTCGTGTGA+AGG - chr8_1:11805484-11805503 None:intergenic 45.0%
ATACCATGATATGGGAGTCG+AGG + chr8_1:11806045-11806064 Msa1178920:CDS 45.0%
TACCATGATATGGGAGTCGA+GGG + chr8_1:11806046-11806065 Msa1178920:CDS 45.0%
CTTGGAAAGATGATGACCTG+AGG - chr8_1:11807135-11807154 None:intergenic 45.0%
GTTACCAAATGCCCCTGATA+TGG + chr8_1:11807244-11807263 Msa1178920:CDS 45.0%
GGAATGTAACACTCGGCAAA+GGG - chr8_1:11807332-11807351 None:intergenic 45.0%
AGGAATGTAACACTCGGCAA+AGG - chr8_1:11807333-11807352 None:intergenic 45.0%
ATTGATCCTAATGCCGATGG+TGG + chr8_1:11807359-11807378 Msa1178920:CDS 45.0%
GATGGTGTCTACACTGTTGA+TGG + chr8_1:11807404-11807423 Msa1178920:CDS 45.0%
!! ACCGTTCCAGTTCTAAGTTC+AGG + chr8_1:11807434-11807453 Msa1178920:CDS 45.0%
GAAGGTAGAGGAACACAAAG+CGG + chr8_1:11807560-11807579 Msa1178920:CDS 45.0%
AGGAGCCAAAGGAGAAGAAT+TGG + chr8_1:11807643-11807662 Msa1178920:CDS 45.0%
GGAGCCAAAGGAGAAGAATT+GGG + chr8_1:11807644-11807663 Msa1178920:CDS 45.0%
ACCTCCCAATTCTTCTCCTT+TGG - chr8_1:11807651-11807670 None:intergenic 45.0%
AAGTTACCTTTGTGAGGGGT+TGG + chr8_1:11807713-11807732 Msa1178920:exon 45.0%
CGTTACTGGATGGTTCCAAA+AGG + chr8_1:11807746-11807765 Msa1178920:three_prime_UTR 45.0%
TTCTTACCGGTACTATCGAG+AGG + chr8_1:11807824-11807843 Msa1178920:three_prime_UTR 45.0%
GCATTCTGCTTTACTCGCAA+AGG - chr8_1:11807859-11807878 None:intergenic 45.0%
CACAGAGAGGAACGATGAGA+AGG - chr8_1:11802084-11802103 None:intergenic 50.0%
AAACCAGGTGGATCAGGCAT+AGG - chr8_1:11802719-11802738 None:intergenic 50.0%
CTTGAGTGTCAAGCATCCAG+TGG + chr8_1:11802757-11802776 Msa1178920:CDS 50.0%
ATCCCGGGAACAAAAACCAC+TGG - chr8_1:11802776-11802795 None:intergenic 50.0%
AAGTCCACCGGTAACAATCC+CGG - chr8_1:11802792-11802811 None:intergenic 50.0%
CTCCCAAAGTTCAAGTCCAC+CGG - chr8_1:11802804-11802823 None:intergenic 50.0%
! GGTGGACTTGAACTTTGGGA+GGG + chr8_1:11802803-11802822 Msa1178920:CDS 50.0%
! GTGGACTTGAACTTTGGGAG+GGG + chr8_1:11802804-11802823 Msa1178920:CDS 50.0%
ATGAGGATGGTGATCGTGGT+TGG + chr8_1:11803074-11803093 Msa1178920:intron 50.0%
! GGAAGGGAACTCCTCTTTTG+TGG + chr8_1:11803710-11803729 Msa1178920:intron 50.0%
TTACAGACCTTCATGCTGGG+TGG + chr8_1:11804310-11804329 Msa1178920:intron 50.0%
GAAACAGGAATGGATCCACC+TGG + chr8_1:11804353-11804372 Msa1178920:CDS 50.0%
ATCCACCTGGCATTAGAGTC+CGG + chr8_1:11804366-11804385 Msa1178920:CDS 50.0%
! CGCCCAAACAAAGTATCCTG+CGG - chr8_1:11804426-11804445 None:intergenic 50.0%
! CGCAGGATACTTTGTTTGGG+CGG + chr8_1:11804424-11804443 Msa1178920:CDS 50.0%
GGCGGTCCTAATTGCTAACT+TGG + chr8_1:11804442-11804461 Msa1178920:CDS 50.0%
! GTTGAAGCACCAGCTCCAAT+GGG + chr8_1:11804763-11804782 Msa1178920:CDS 50.0%
GGTGTTCCAAAGGCTATAGC+AGG + chr8_1:11804856-11804875 Msa1178920:CDS 50.0%
CCTTGCAACAGCAATGTCTC+GGG - chr8_1:11804899-11804918 None:intergenic 50.0%
! TGACTTGTATGGGTGTAGCC+TGG + chr8_1:11804960-11804979 Msa1178920:intron 50.0%
!! TGAAGCACTGACACAGACAC+CGG + chr8_1:11805061-11805080 Msa1178920:intron 50.0%
!! TATGCAGCACCGACACTTCA+GGG - chr8_1:11805136-11805155 None:intergenic 50.0%
AAAGGGAGGGGACACCATAT+GGG + chr8_1:11805424-11805443 Msa1178920:CDS 50.0%
TCGGAGCAACAAACTGAAGC+AGG - chr8_1:11806123-11806142 None:intergenic 50.0%
! CTACCACGCGCCATCATTTT+CGG - chr8_1:11806142-11806161 None:intergenic 50.0%
GGAACATATCAAGAGCGGAG+AGG - chr8_1:11807046-11807065 None:intergenic 50.0%
AGTTGAGTACTTGAGCCCTC+AGG + chr8_1:11807116-11807135 Msa1178920:intron 50.0%
TTGTCACCACCATCGGCATT+AGG - chr8_1:11807368-11807387 None:intergenic 50.0%
ATGTGTGCTAAAGGTTGGCG+CGG + chr8_1:11807461-11807480 Msa1178920:CDS 50.0%
ACATAAGTGCGGATCCCTGA+AGG - chr8_1:11807503-11807522 None:intergenic 50.0%
TCCTCTACCTTCTAGCAGGT+TGG - chr8_1:11807552-11807571 None:intergenic 50.0%
GTGTTCCTCTACCTTCTAGC+AGG - chr8_1:11807556-11807575 None:intergenic 50.0%
GATGTTATGAGGGTTGCAGC+AGG + chr8_1:11807623-11807642 Msa1178920:CDS 50.0%
GCCAAAGGAGAAGAATTGGG+AGG + chr8_1:11807647-11807666 Msa1178920:CDS 50.0%
AGGAATCCAACCCCTCACAA+AGG - chr8_1:11807722-11807741 None:intergenic 50.0%
TTGGATTCCTCTCCCGTTAC+TGG + chr8_1:11807732-11807751 Msa1178920:three_prime_UTR 50.0%
ATTCCTCTCCCGTTACTGGA+TGG + chr8_1:11807736-11807755 Msa1178920:three_prime_UTR 50.0%
GGATGGTTCCAAAAGGAGAG+AGG + chr8_1:11807753-11807772 Msa1178920:three_prime_UTR 50.0%
! TGCGTCTTCCTCTCTCCTTT+TGG - chr8_1:11807764-11807783 None:intergenic 50.0%
GTGGATCCTCTCGATAGTAC+CGG - chr8_1:11807833-11807852 None:intergenic 50.0%
ATTCCAGTGAGTGGCGAAAC+AGG + chr8_1:11808006-11808025 Msa1178920:three_prime_UTR 50.0%
AGTCCACCGGTAACAATCCC+GGG - chr8_1:11802791-11802810 None:intergenic 55.0%
! CGGTGGACTTGAACTTTGGG+AGG + chr8_1:11802802-11802821 Msa1178920:CDS 55.0%
!! TGGTTGGTGGGTGAGCTGTT+CGG + chr8_1:11803152-11803171 Msa1178920:intron 55.0%
ATGTGCTCCACCCAGCATGA+AGG - chr8_1:11804320-11804339 None:intergenic 55.0%
ATTAGAGTCCGGCCTGTCTC+AGG + chr8_1:11804377-11804396 Msa1178920:CDS 55.0%
CTACAAGTCCTGAGACAGGC+CGG - chr8_1:11804388-11804407 None:intergenic 55.0%
GCAGCTACAAGTCCTGAGAC+AGG - chr8_1:11804392-11804411 None:intergenic 55.0%
! GGTTGAAGCACCAGCTCCAA+TGG + chr8_1:11804762-11804781 Msa1178920:CDS 55.0%
! CCCGAGACATTGCTGTTGCA+AGG + chr8_1:11804896-11804915 Msa1178920:CDS 55.0%
!! CTATGCAGCACCGACACTTC+AGG - chr8_1:11805137-11805156 None:intergenic 55.0%
ATCACAAGGGCGATTGCACC+AGG + chr8_1:11805311-11805330 Msa1178920:intron 55.0%
TCACAAGGGCGATTGCACCA+GGG + chr8_1:11805312-11805331 Msa1178920:intron 55.0%
CATATGGTGTCCCCTCCCTT+TGG - chr8_1:11805425-11805444 None:intergenic 55.0%
CAAAGGGAGGGGACACCATA+TGG + chr8_1:11805423-11805442 Msa1178920:CDS 55.0%
AAGGGAGGGGACACCATATG+GGG + chr8_1:11805425-11805444 Msa1178920:CDS 55.0%
TGGTCACCAGAGGAAAGCTG+TGG + chr8_1:11805458-11805477 Msa1178920:CDS 55.0%
TGAAGGCCACAGCTTTCCTC+TGG - chr8_1:11805467-11805486 None:intergenic 55.0%
GTTTGGCAAAGCTGTCGCAG+AGG + chr8_1:11805571-11805590 Msa1178920:intron 55.0%
AAGACAATGCAGGGCCCTGT+TGG - chr8_1:11805894-11805913 None:intergenic 55.0%
CTCCCTCGACTCCCATATCA+TGG - chr8_1:11806051-11806070 None:intergenic 55.0%
! CTACCTTCTAGCAGGTTGGC+TGG - chr8_1:11807548-11807567 None:intergenic 55.0%
GCCAACCTGCTAGAAGGTAG+AGG + chr8_1:11807548-11807567 Msa1178920:CDS 55.0%
! GAACCATCCAGTAACGGGAG+AGG - chr8_1:11807742-11807761 None:intergenic 55.0%
CTTCCTGTTTCGCCACTCAC+TGG - chr8_1:11808012-11808031 None:intergenic 55.0%
GAGTGGCGAAACAGGAAGCA+AGG + chr8_1:11808014-11808033 Msa1178920:three_prime_UTR 55.0%
GGTCCTATGCCTGATCCACC+TGG + chr8_1:11802713-11802732 Msa1178920:CDS 60.0%
GTTCCCGGGATTGTTACCGG+TGG + chr8_1:11802785-11802804 Msa1178920:CDS 60.0%
!! GAGGGGCATCAGTGTGCTGA+AGG + chr8_1:11802821-11802840 Msa1178920:CDS 60.0%
ACAGGCCGGACTCTAATGCC+AGG - chr8_1:11804374-11804393 None:intergenic 60.0%
! GCTGCTGACTACTTTGCCGC+AGG + chr8_1:11804407-11804426 Msa1178920:CDS 60.0%
! GAAGCACCAGCTCCAATGGG+TGG + chr8_1:11804766-11804785 Msa1178920:CDS 60.0%
! GTGGTGGAGGAGGACCAGAT+TGG + chr8_1:11804785-11804804 Msa1178920:CDS 60.0%
ACCGACACGCCCTGAAGTGT+CGG + chr8_1:11805124-11805143 Msa1178920:intron 60.0%
ACCGACACTTCAGGGCGTGT+CGG - chr8_1:11805128-11805147 None:intergenic 60.0%
CCAATCAAGGCCGCCCCATA+TGG - chr8_1:11805441-11805460 None:intergenic 60.0%
CCATATGGGGCGGCCTTGAT+TGG + chr8_1:11805438-11805457 Msa1178920:CDS 60.0%
! CGGCCTTGATTGGTCACCAG+AGG + chr8_1:11805448-11805467 Msa1178920:CDS 60.0%
! GCTCCGAAAATGATGGCGCG+TGG + chr8_1:11806136-11806155 Msa1178920:CDS 60.0%
! CCTTCTAGCAGGTTGGCTGG+AGG - chr8_1:11807545-11807564 None:intergenic 60.0%
CCTCCAGCCAACCTGCTAGA+AGG + chr8_1:11807542-11807561 Msa1178920:CDS 60.0%
AGGGTTGCAGCAGGAGCCAA+AGG + chr8_1:11807632-11807651 Msa1178920:CDS 60.0%
GCTTTACTCGCAAAGGGGCG+TGG - chr8_1:11807852-11807871 None:intergenic 60.0%
GGCCGGACTCTAATGCCAGG+TGG - chr8_1:11804371-11804390 None:intergenic 65.0%
GCACCAGCTCCAATGGGTGG+TGG + chr8_1:11804769-11804788 Msa1178920:CDS 65.0%
CCTCCACCACCCATTGGAGC+TGG - chr8_1:11804775-11804794 None:intergenic 65.0%
! CCAGCTCCAATGGGTGGTGG+AGG + chr8_1:11804772-11804791 Msa1178920:CDS 65.0%
!! GCTCCAATGGGTGGTGGAGG+AGG + chr8_1:11804775-11804794 Msa1178920:CDS 65.0%
GGTCCTCCTCCACCACCCAT+TGG - chr8_1:11804781-11804800 None:intergenic 65.0%
GGAGGGGACACCATATGGGG+CGG + chr8_1:11805428-11805447 Msa1178920:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 11802028 11808248 11802028 ID=Msa1178920;Name=Msa1178920
chr8_1 mRNA 11802028 11808248 11802028 ID=Msa1178920-mRNA-1;Parent=Msa1178920;Name=Msa1178920-mRNA-1;_AED=0.06;_eAED=0.06;_QI=196|0.83|0.85|1|0.83|0.71|7|521|665
chr8_1 exon 11802028 11802084 11802028 ID=Msa1178920-mRNA-1:exon:4204;Parent=Msa1178920-mRNA-1
chr8_1 exon 11802274 11802894 11802274 ID=Msa1178920-mRNA-1:exon:4205;Parent=Msa1178920-mRNA-1
chr8_1 exon 11804316 11804538 11804316 ID=Msa1178920-mRNA-1:exon:4206;Parent=Msa1178920-mRNA-1
chr8_1 exon 11804634 11804917 11804634 ID=Msa1178920-mRNA-1:exon:4207;Parent=Msa1178920-mRNA-1
chr8_1 exon 11805319 11805583 11805319 ID=Msa1178920-mRNA-1:exon:4208;Parent=Msa1178920-mRNA-1
chr8_1 exon 11805989 11806248 11805989 ID=Msa1178920-mRNA-1:exon:4209;Parent=Msa1178920-mRNA-1
chr8_1 exon 11807244 11808248 11807244 ID=Msa1178920-mRNA-1:exon:4210;Parent=Msa1178920-mRNA-1
chr8_1 five_prime_UTR 11802028 11802084 11802028 ID=Msa1178920-mRNA-1:five_prime_utr;Parent=Msa1178920-mRNA-1
chr8_1 five_prime_UTR 11802274 11802412 11802274 ID=Msa1178920-mRNA-1:five_prime_utr;Parent=Msa1178920-mRNA-1
chr8_1 CDS 11802413 11802894 11802413 ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1
chr8_1 CDS 11804316 11804538 11804316 ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1
chr8_1 CDS 11804634 11804917 11804634 ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1
chr8_1 CDS 11805319 11805583 11805319 ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1
chr8_1 CDS 11805989 11806248 11805989 ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1
chr8_1 CDS 11807244 11807727 11807244 ID=Msa1178920-mRNA-1:cds;Parent=Msa1178920-mRNA-1
chr8_1 three_prime_UTR 11807728 11808248 11807728 ID=Msa1178920-mRNA-1:three_prime_utr;Parent=Msa1178920-mRNA-1
Gene Sequence

>Msa1178920

ATGGCTTTGATCCGAAGAAGAAAAGGGTCAGAACCAGAAAAGGGTAGTAGCGAAAATTCAGAACCAAAAATTCAGAAAAAAGAAGAAGAAGAAGAAGATGATGATAATGATAAGAACAAAAAGAACAAGAAGAAAAACAAGGACGAGGTTGCTGTTTTTAAGAAGAAGAGTACTAGGTGGTCTTGTGTTGACAGTTGTTGTTGGTTTGTTGGTTGCATTTGTACTTTATGGTGGTTTTTGTTGTTTATGTATAATGTAATGCCAGCTTCATTTCCTCAGTATGTCACTGAGGCTATAACTGGTCCTATGCCTGATCCACCTGGTTTGAAATTGAAGAAAGAAGGCTTGAGTGTCAAGCATCCAGTGGTTTTTGTTCCCGGGATTGTTACCGGTGGACTTGAACTTTGGGAGGGGCATCAGTGTGCTGAAGGATTGTTTAGGAAGAGATTGTGGGGTGGTACTTTTGGAGAAGTTTATAAAAGACCTTCATGCTGGGTGGAGCACATGTCCCTCGACAATGAAACAGGAATGGATCCACCTGGCATTAGAGTCCGGCCTGTCTCAGGACTTGTAGCTGCTGACTACTTTGCCGCAGGATACTTTGTTTGGGCGGTCCTAATTGCTAACTTGGCACGCATCGGTTATGAAGAAAAAACTATGTACATGGCTGCATATGATTGGAGAATATCATTTCAGAACACTGAGGTGCGGGATCAAACACTAAGTCGGATAAAAAGCAACATAGAACTCATGGTTTCCACTAATGGTGGAAATAAGGCGGTTATTATTCCACATTCGATGGGGGTTTTGTATTTTCTTCATTTCATGAAATGGGTTGAAGCACCAGCTCCAATGGGTGGTGGAGGAGGACCAGATTGGTGTTCCAAATATATTAAGGCAATTGTAAACATCGGTGGACCATTTTTAGGTGTTCCAAAGGCTATAGCAGGGCTTTTCTCAGCTGAAGCCCGAGACATTGCTGTTGCAAGGGCGATTGCACCAGGGTTTTTAGATAACGATATGTTCCGCATTCAAACATTGCAACATGTTATGAAGATGACTCGCACTTGGGACTCAACAATGTCAATGATACCAAAGGGAGGGGACACCATATGGGGCGGCCTTGATTGGTCACCAGAGGAAAGCTGTGGCCTTCACACGAGAAAGCAAAGCAGCAACAATACTCAGTTGACAGAACAAAAGACAAATAAAACAAATGTTAACTATGGAAGAATGATATCGTTTGGCAAAGCTGGTGCAATTAAGGGTCCCAATGTTGCAAATACCTCTTGTCGTGATGTGTGGACTGAATACCATGATATGGGAGTCGAGGGAGTAAGAGCAGTTGCAGAACATAAAGTTTACACAGCTGGCTCAATCATAGACCTGCTTCAGTTTGTTGCTCCGAAAATGATGGCGCGTGGTAGTGATCATTTCTCTTATGGAGTAGCTGACAATTTAGATGATCCTAAATATGAACACTACAAATATTGGTCAAACCCATTGGAGACAAAGTTACCAAATGCCCCTGATATGGAAATCTTCTCTCTATATGGAGTTGGCCTACCAACCGAAAGAGCTTATATTTATAAGTTAACTCCCTTTGCCGAGTGTTACATTCCTTTTGAAATTGATCCTAATGCCGATGGTGGTGACAAAGTTAGTTGTCTGAAAGATGGTGTCTACACTGTTGATGGTGATGAGACCGTTCCAGTTCTAAGTTCAGGATACATGTGTGCTAAAGGTTGGCGCGGAAAAACAAGATTCAATCCTTCAGGGATCCGCACTTATGTTCGAGAATATGATCATTCTCCTCCAGCCAACCTGCTAGAAGGTAGAGGAACACAAAGCGGTGCTCATGTTGATATAATGGGAAACTTTGCGTTGATTGAAGATGTTATGAGGGTTGCAGCAGGAGCCAAAGGAGAAGAATTGGGAGGTGATAAGGTGTATTCTGATATCTTTAAATGGTCCGATAGAATCAAGTTACCTTTGTGA

Protein sequence

>Msa1178920

MALIRRRKGSEPEKGSSENSEPKIQKKEEEEEDDDNDKNKKNKKKNKDEVAVFKKKSTRWSCVDSCCWFVGCICTLWWFLLFMYNVMPASFPQYVTEAITGPMPDPPGLKLKKEGLSVKHPVVFVPGIVTGGLELWEGHQCAEGLFRKRLWGGTFGEVYKRPSCWVEHMSLDNETGMDPPGIRVRPVSGLVAADYFAAGYFVWAVLIANLARIGYEEKTMYMAAYDWRISFQNTEVRDQTLSRIKSNIELMVSTNGGNKAVIIPHSMGVLYFLHFMKWVEAPAPMGGGGGPDWCSKYIKAIVNIGGPFLGVPKAIAGLFSAEARDIAVARAIAPGFLDNDMFRIQTLQHVMKMTRTWDSTMSMIPKGGDTIWGGLDWSPEESCGLHTRKQSSNNTQLTEQKTNKTNVNYGRMISFGKAGAIKGPNVANTSCRDVWTEYHDMGVEGVRAVAEHKVYTAGSIIDLLQFVAPKMMARGSDHFSYGVADNLDDPKYEHYKYWSNPLETKLPNAPDMEIFSLYGVGLPTERAYIYKLTPFAECYIPFEIDPNADGGDKVSCLKDGVYTVDGDETVPVLSSGYMCAKGWRGKTRFNPSGIRTYVREYDHSPPANLLEGRGTQSGAHVDIMGNFALIEDVMRVAAGAKGEELGGDKVYSDIFKWSDRIKLPL*