AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008850 MtrunA17_Chr1g0146481 97.895 285 6 0 1 285 265 549 0.0 583
Msa0008850 MtrunA17_Chr3g0145921 34.256 289 183 2 1 283 283 570 3.60e-58 195
Msa0008850 MtrunA17_Chr1g0180881 31.359 287 190 2 5 285 274 559 6.58e-45 159
Msa0008850 MtrunA17_Chr7g0264491 32.056 287 188 2 5 285 270 555 8.24e-45 159
Msa0008850 MtrunA17_Chr3g0090001 34.177 237 149 2 53 283 167 402 2.14e-36 134
Msa0008850 MtrunA17_Chr4g0021031 30.453 243 154 5 42 272 251 490 3.54e-24 101
Msa0008850 MtrunA17_Chr3g0126401 26.336 262 179 6 32 283 256 513 2.43e-18 84.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008850 AT3G53920.1 56.014 291 120 3 1 284 281 570 1.34e-118 352
Msa0008850 AT3G53920.2 66.154 130 44 0 1 130 281 410 2.16e-61 200
Msa0008850 AT1G08540.1 35.640 289 179 3 1 283 281 568 2.47e-61 204
Msa0008850 AT2G36990.1 32.404 287 187 2 5 285 260 545 4.93e-47 165
Msa0008850 AT5G13730.1 35.461 282 168 4 9 282 139 414 1.94e-45 158
Msa0008850 AT1G64860.1 29.268 246 153 5 42 272 249 488 2.46e-24 102
Msa0008850 AT1G64860.2 29.048 210 130 4 42 236 249 454 4.84e-21 92.8
Msa0008850 AT5G24120.1 25.794 252 173 6 42 283 269 516 5.48e-17 81.3
Msa0008850 AT5G24120.3 25.794 252 173 6 42 283 269 516 5.48e-17 81.3
Msa0008850 AT5G24120.2 25.794 252 173 6 42 283 269 516 5.48e-17 81.3

Find 60 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGACCTTCCGTGCTTTC+TGG 0.088168 1_1:+12822092 None:intergenic
CTCAAAGTTGAATTATTATT+TGG 0.140183 1_1:-12820722 Msa0008850:CDS
CTTTGCAATTTCAAGATCAT+TGG 0.280476 1_1:+12822048 None:intergenic
AAGATCATTGGGATATTTCA+TGG 0.329371 1_1:+12822060 None:intergenic
CCCAAGTCTCTTGAATATAT+AGG 0.337893 1_1:-12820826 Msa0008850:CDS
CCAAGTCTCTTGAATATATA+GGG 0.343015 1_1:-12820825 Msa0008850:CDS
ATCTGTATATGGGGATTATG+AGG 0.355598 1_1:-12820646 Msa0008850:three_prime_UTR
TGTTTCATGACAGTCTCTTC+AGG 0.370634 1_1:+12820946 None:intergenic
AGTAGCTGGGCAGAAGCATC+TGG 0.382458 1_1:-12823840 Msa0008850:CDS
TTGGATCTGTAGTTTATCAT+TGG 0.388384 1_1:-12820703 Msa0008850:exon
TATACTTTGCTAGAAAATAC+AGG 0.389187 1_1:-12823731 Msa0008850:CDS
TTTCCCTTGAGTCCAAGCTT+TGG 0.389465 1_1:+12820893 None:intergenic
ATTTCATAGGTAGGATATAT+AGG 0.391468 1_1:-12822377 Msa0008850:intron
AAGTGGTAAGCTTGAGTAGC+TGG 0.392151 1_1:-12823854 Msa0008850:CDS
CCCTATATATTCAAGAGACT+TGG 0.394252 1_1:+12820825 None:intergenic
AGCTTTGGAAGATTTGCTTC+AGG 0.398464 1_1:-12823697 Msa0008850:intron
TTTGCAATTTCAAGATCATT+GGG 0.411874 1_1:+12822049 None:intergenic
AGGACTCTCTATCGACAAAT+CGG 0.413081 1_1:+12820966 None:intergenic
CAGGGGTATGGGAATAGCTT+TGG 0.414935 1_1:-12823712 Msa0008850:CDS
TGCTAGAAAATACAGGGGTA+TGG 0.433372 1_1:-12823724 Msa0008850:CDS
CCTATGTGCAGTACTGGATA+AGG 0.435511 1_1:-12822301 Msa0008850:CDS
TCTAGCAAAGTATAGAACTA+AGG 0.459983 1_1:+12823740 None:intergenic
ACAGTGCATTCAATAAACTT+TGG 0.463416 1_1:+12820603 None:intergenic
CCCTTGAGTCCAAGCTTTGG+AGG 0.467981 1_1:+12820896 None:intergenic
TGTCAAATCGCTCTGCTCCT+TGG 0.471889 1_1:+12822348 None:intergenic
GTATCGCGGCATTGAATACA+TGG 0.488890 1_1:-12821960 Msa0008850:intron
TCTCAACCTATGTGCAGTAC+TGG 0.489155 1_1:-12822307 Msa0008850:CDS
AAGTTAGCAAAGAATGGATA+AGG 0.493553 1_1:-12820792 Msa0008850:CDS
TCCTCCAAAGCTTGGACTCA+AGG 0.494978 1_1:-12820897 Msa0008850:CDS
AAGAAACTGTTCTTAGACAA+TGG 0.501314 1_1:+12821987 None:intergenic
ACATGATATCCTCCAAAGCT+TGG 0.510778 1_1:-12820905 Msa0008850:CDS
CTTGAAATTGCAAAGATGAC+AGG 0.516829 1_1:-12822040 Msa0008850:CDS
AAGGAAATCAATGTCAAGAA+TGG 0.518039 1_1:-12822282 Msa0008850:CDS
GCTAGAAAATACAGGGGTAT+GGG 0.518577 1_1:-12823723 Msa0008850:CDS
CTACAACAGCAACTGTATCA+TGG 0.521397 1_1:-12823801 Msa0008850:CDS
CCTATATATTCAAGAGACTT+GGG 0.523071 1_1:+12820826 None:intergenic
AGCATCTGGAGTTGACGAAA+AGG 0.525544 1_1:-12823826 Msa0008850:CDS
CCTCCAAAGCTTGGACTCAA+GGG 0.531320 1_1:-12820896 Msa0008850:CDS
CAGATACTAATCCTACGATT+CGG 0.533151 1_1:-12820868 Msa0008850:CDS
CCTTATCCAGTACTGCACAT+AGG 0.551255 1_1:+12822301 None:intergenic
AGTGGTAAGCTTGAGTAGCT+GGG 0.558761 1_1:-12823853 Msa0008850:CDS
TGGGTTGATGATCATCAGTA+AGG 0.563057 1_1:+12820845 None:intergenic
AAAGATGACAGGTCTTTCAC+TGG 0.565471 1_1:-12822029 Msa0008850:CDS
GAGCGATTTGACAGTACAAG+AGG 0.568669 1_1:-12822338 Msa0008850:CDS
GGACTCTCTATCGACAAATC+GGG 0.571163 1_1:+12820967 None:intergenic
ACTGCACATAGGTTGAGAAT+CGG 0.572145 1_1:+12822312 None:intergenic
CATCAGTAAGGCCGAATCGT+AGG 0.579004 1_1:+12820857 None:intergenic
AATTAGAACAGCTATAGAAG+AGG 0.591677 1_1:-12823886 Msa0008850:CDS
ATACTTTGCTAGAAAATACA+GGG 0.594173 1_1:-12823730 Msa0008850:CDS
AAAGCTTGGACTCAAGGGAA+AGG 0.596464 1_1:-12820891 Msa0008850:CDS
TCTGTATATGGGGATTATGA+GGG 0.600375 1_1:-12820645 Msa0008850:three_prime_UTR
TAAGTCAGATCCAGAAAGCA+CGG 0.609321 1_1:-12822102 Msa0008850:CDS
AGAAGAGGATACAAAGCAAG+TGG 0.626241 1_1:-12823871 Msa0008850:CDS
GAAATCAATGTCAAGAATGG+TGG 0.626575 1_1:-12822279 Msa0008850:CDS
TCAGATCCAGAAAGCACGGA+AGG 0.632240 1_1:-12822098 Msa0008850:CDS
GGATATATAGGTGTTCTCCA+AGG 0.651530 1_1:-12822365 Msa0008850:CDS
ACAGTTTCTTCAATGTATCG+CGG 0.667801 1_1:-12821974 Msa0008850:CDS
AGTCTCTTGAATATATAGGG+AGG 0.683476 1_1:-12820822 Msa0008850:CDS
ATGGTGGCGAAATATGCTCG+AGG 0.710363 1_1:-12822263 Msa0008850:CDS
TACTTTGCTAGAAAATACAG+GGG 0.744271 1_1:-12823729 Msa0008850:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTCATCTAAAAATAAATTT+CGG - chr1_1:12821338-12821357 Msa0008850:intron 10.0%
!! AATTTAGTTAAAAGTAATTA+TGG + chr1_1:12821581-12821600 None:intergenic 10.0%
!!! TTTTAAATAAAATTACTAGT+CGG + chr1_1:12822683-12822702 None:intergenic 10.0%
!!! AAATTCAACAAATTTTTAAA+TGG - chr1_1:12822998-12823017 Msa0008850:intron 10.0%
!!! TACTAGATAAAAATAATTTT+AGG + chr1_1:12823526-12823545 None:intergenic 10.0%
!!! ACATTTTCTATATATTATTG+TGG - chr1_1:12820918-12820937 Msa0008850:CDS 15.0%
!!! AGTTTTAAATTTTAAACATG+AGG - chr1_1:12821644-12821663 Msa0008850:intron 15.0%
!! CAATAAAATATCGAGTTATT+CGG - chr1_1:12820576-12820595 Msa0008850:three_prime_UTR 20.0%
!!! TTTTCTATATATTATTGTGG+AGG - chr1_1:12820921-12820940 Msa0008850:CDS 20.0%
!!! GATTAACAATGGATATTTTA+TGG - chr1_1:12821023-12821042 Msa0008850:intron 20.0%
!!! TTAAATTTTAAACATGAGGT+CGG - chr1_1:12821648-12821667 Msa0008850:intron 20.0%
!!! GTATAATTGGACAATATTTT+TGG - chr1_1:12821738-12821757 Msa0008850:intron 20.0%
!!! TTTTGTAAATACTTTATAGC+AGG - chr1_1:12822004-12822023 Msa0008850:CDS 20.0%
!! AATTTAGGAGTTTACATATT+TGG + chr1_1:12822735-12822754 None:intergenic 20.0%
!! TCAATAGTAAGAAATATGTT+TGG + chr1_1:12822786-12822805 None:intergenic 20.0%
!! TAGTTTAATGAGTAGTTAAT+GGG - chr1_1:12823048-12823067 Msa0008850:intron 20.0%
!! AAATCTTTAAATGGTTAACA+CGG + chr1_1:12823309-12823328 None:intergenic 20.0%
!! AAATTCGACAAATCTTTAAA+TGG + chr1_1:12823318-12823337 None:intergenic 20.0%
!! CTCAAAGTTGAATTATTATT+TGG - chr1_1:12823831-12823850 Msa0008850:CDS 20.0%
!!! ATCTATTTTCATCTGTATAT+GGG - chr1_1:12823897-12823916 Msa0008850:CDS 20.0%
! TATACTTTGCTAGAAAATAC+AGG - chr1_1:12820822-12820841 Msa0008850:CDS 25.0%
! ATACTTTGCTAGAAAATACA+GGG - chr1_1:12820823-12820842 Msa0008850:CDS 25.0%
! ATATATGTTTGTGTATGAGA+TGG - chr1_1:12821091-12821110 Msa0008850:intron 25.0%
!!! CAGTATTTTTGTAATCTTCA+AGG - chr1_1:12821612-12821631 Msa0008850:intron 25.0%
! TGTAATCTTCAAGGAATATA+AGG - chr1_1:12821621-12821640 Msa0008850:intron 25.0%
!! TAAATTTTAAACATGAGGTC+GGG - chr1_1:12821649-12821668 Msa0008850:intron 25.0%
! TGAAAGAGATTAACATGAAA+AGG - chr1_1:12821802-12821821 Msa0008850:intron 25.0%
! TAAATACTTTATAGCAGGAA+AGG - chr1_1:12822009-12822028 Msa0008850:CDS 25.0%
! ATTGATCAAACCATTAATGA+TGG + chr1_1:12822059-12822078 None:intergenic 25.0%
! GAATAACATACAGGTTATTA+AGG + chr1_1:12822149-12822168 None:intergenic 25.0%
! TTATTCTCTTCACATTTCAT+AGG - chr1_1:12822163-12822182 Msa0008850:intron 25.0%
! ATTTCATAGGTAGGATATAT+AGG - chr1_1:12822176-12822195 Msa0008850:intron 25.0%
!! CTTTTCATTACTCTTTTTAG+TGG - chr1_1:12822412-12822431 Msa0008850:intron 25.0%
! TTTGCAATTTCAAGATCATT+GGG + chr1_1:12822507-12822526 None:intergenic 25.0%
! AAAAAGAAGAAGTAACAATG+GGG + chr1_1:12822645-12822664 None:intergenic 25.0%
! GAAAAAGAAGAAGTAACAAT+GGG + chr1_1:12822646-12822665 None:intergenic 25.0%
! AGAAAAAGAAGAAGTAACAA+TGG + chr1_1:12822647-12822666 None:intergenic 25.0%
! TAGATACGACTACATAAATT+TGG - chr1_1:12822826-12822845 Msa0008850:intron 25.0%
!!! GCCATTTTAAACAACAATTT+GGG - chr1_1:12822969-12822988 Msa0008850:intron 25.0%
!!! TCCCAAATTGTTGTTTAAAA+TGG + chr1_1:12822973-12822992 None:intergenic 25.0%
! GTAGTTTAATGAGTAGTTAA+TGG - chr1_1:12823047-12823066 Msa0008850:intron 25.0%
! GGTTAATTAAGTTCAGTTAA+TGG + chr1_1:12823100-12823119 None:intergenic 25.0%
! TGTTCAAATTTGTGGTTAAT+TGG + chr1_1:12823121-12823140 None:intergenic 25.0%
! GTTAGTAATGTTCAAATTTG+TGG + chr1_1:12823129-12823148 None:intergenic 25.0%
! GGTTAATAAAGTTCTGTAAA+TGG - chr1_1:12823219-12823238 Msa0008850:intron 25.0%
!!! ATTTGGTTGATAGATATATC+AGG + chr1_1:12823258-12823277 None:intergenic 25.0%
!! TTTTCAAAGTTAGCAAAGAA+TGG - chr1_1:12823755-12823774 Msa0008850:CDS 25.0%
!! CATCTATTTTCATCTGTATA+TGG - chr1_1:12823896-12823915 Msa0008850:CDS 25.0%
!! TCTATTTTCATCTGTATATG+GGG - chr1_1:12823898-12823917 Msa0008850:CDS 25.0%
ATTTGCGTAATTTACAAGCA+TGG + chr1_1:12820604-12820623 None:intergenic 30.0%
!! TTAAAGTTTTGTACTACTCC+AGG - chr1_1:12820625-12820644 Msa0008850:three_prime_UTR 30.0%
AATTAGAACAGCTATAGAAG+AGG - chr1_1:12820667-12820686 Msa0008850:three_prime_UTR 30.0%
TCTAGCAAAGTATAGAACTA+AGG + chr1_1:12820816-12820835 None:intergenic 30.0%
TACTTTGCTAGAAAATACAG+GGG - chr1_1:12820824-12820843 Msa0008850:CDS 30.0%
TTTGCCAAACAAACACTTAA+TGG + chr1_1:12821190-12821209 None:intergenic 30.0%
TAAGTGTTTGTTTGGCAAAT+AGG - chr1_1:12821191-12821210 Msa0008850:intron 30.0%
TTTGGCAAATAGGAAAATCA+CGG - chr1_1:12821201-12821220 Msa0008850:intron 30.0%
AATTCACGTTCAAATTGTCT+AGG - chr1_1:12821268-12821287 Msa0008850:intron 30.0%
ATTCACGTTCAAATTGTCTA+GGG - chr1_1:12821269-12821288 Msa0008850:intron 30.0%
TTAACATGTGTTTCGATACA+CGG + chr1_1:12821316-12821335 None:intergenic 30.0%
TGCTTGATCTATCATGAAAA+GGG + chr1_1:12821423-12821442 None:intergenic 30.0%
TTATAAACTTCTGTGCATGT+CGG + chr1_1:12821453-12821472 None:intergenic 30.0%
TTTGTATTCTCAACTATCGT+GGG - chr1_1:12821474-12821493 Msa0008850:intron 30.0%
AAAATAGAGAATGATTAGCG+AGG - chr1_1:12821525-12821544 Msa0008850:intron 30.0%
! AAATTTTAAACATGAGGTCG+GGG - chr1_1:12821650-12821669 Msa0008850:intron 30.0%
! TTTTAAACTCTGTTCACTCA+AGG - chr1_1:12821694-12821713 Msa0008850:intron 30.0%
AAGGTGATTTGAAAGATTCA+AGG - chr1_1:12821713-12821732 Msa0008850:intron 30.0%
AGGTGATTTGAAAGATTCAA+GGG - chr1_1:12821714-12821733 Msa0008850:intron 30.0%
! AAGATTCAAGGGTGTATAAT+TGG - chr1_1:12821725-12821744 Msa0008850:intron 30.0%
!!! GGACAATATTTTTGGAAACT+CGG - chr1_1:12821746-12821765 Msa0008850:intron 30.0%
TATATAGGCAAATATACTGC+CGG + chr1_1:12821775-12821794 None:intergenic 30.0%
CTCTTTCATGTAGACTATAT+AGG + chr1_1:12821790-12821809 None:intergenic 30.0%
! TAGAGTGTTTCCATCATTAA+TGG - chr1_1:12822046-12822065 Msa0008850:CDS 30.0%
ATGTGAAGAGAATAACATAC+AGG + chr1_1:12822158-12822177 None:intergenic 30.0%
AAGGAAATCAATGTCAAGAA+TGG - chr1_1:12822271-12822290 Msa0008850:CDS 30.0%
TAACGCAAAGATCAAATTCA+TGG + chr1_1:12822387-12822406 None:intergenic 30.0%
AAGATCATTGGGATATTTCA+TGG + chr1_1:12822496-12822515 None:intergenic 30.0%
CTTTGCAATTTCAAGATCAT+TGG + chr1_1:12822508-12822527 None:intergenic 30.0%
AAGAAACTGTTCTTAGACAA+TGG + chr1_1:12822569-12822588 None:intergenic 30.0%
! CTTCTTTTTCTGTTATGTTG+TGG - chr1_1:12822656-12822675 Msa0008850:intron 30.0%
TGAATGTCAACCAAAAAAAC+AGG - chr1_1:12822860-12822879 Msa0008850:intron 30.0%
GAATGTCAACCAAAAAAACA+GGG - chr1_1:12822861-12822880 Msa0008850:intron 30.0%
!!! TTTTCAACACCCTGTTTTTT+TGG + chr1_1:12822873-12822892 None:intergenic 30.0%
ATGTCTTGTAAACATCAGAA+AGG - chr1_1:12822947-12822966 Msa0008850:intron 30.0%
!! GGCCATTTTAAACAACAATT+TGG - chr1_1:12822968-12822987 Msa0008850:intron 30.0%
! GTTAATGGGTATATCAAGAT+TGG - chr1_1:12823062-12823081 Msa0008850:intron 30.0%
TGAACATTACTAACGATTTC+AGG - chr1_1:12823135-12823154 Msa0008850:intron 30.0%
! TTTTCAAATCTCCATGTAGT+TGG + chr1_1:12823165-12823184 None:intergenic 30.0%
GTTGATCACATTTCAAATTG+TGG - chr1_1:12823198-12823217 Msa0008850:intron 30.0%
! TTGAACTTGAACATCAGTTT+TGG + chr1_1:12823347-12823366 None:intergenic 30.0%
!!! ACTTACTTTCTTTTTTCCCT+CGG - chr1_1:12823409-12823428 Msa0008850:intron 30.0%
! GTTTTTATGACCATGTATGT+TGG - chr1_1:12823433-12823452 Msa0008850:intron 30.0%
CATGAATATACCAACATACA+TGG + chr1_1:12823446-12823465 None:intergenic 30.0%
CCTATATATTCAAGAGACTT+GGG + chr1_1:12823730-12823749 None:intergenic 30.0%
CCAAGTCTCTTGAATATATA+GGG - chr1_1:12823728-12823747 Msa0008850:CDS 30.0%
AAGTTAGCAAAGAATGGATA+AGG - chr1_1:12823761-12823780 Msa0008850:CDS 30.0%
TTGGATCTGTAGTTTATCAT+TGG - chr1_1:12823850-12823869 Msa0008850:CDS 30.0%
ACAGTGCATTCAATAAACTT+TGG + chr1_1:12823953-12823972 None:intergenic 30.0%
ATTGTGGAGGAGTTTCTATT+TGG - chr1_1:12820934-12820953 Msa0008850:CDS 35.0%
CATTGTTAATCGCAAAACTC+AGG + chr1_1:12821014-12821033 None:intergenic 35.0%
! CTGAGTTTTGCGATTAACAA+TGG - chr1_1:12821012-12821031 Msa0008850:intron 35.0%
ATGTTTGTGTATGAGATGGA+AGG - chr1_1:12821095-12821114 Msa0008850:intron 35.0%
TAGATAGAGTTCATGACACA+AGG - chr1_1:12821146-12821165 Msa0008850:intron 35.0%
ACCTCCATTAAGTGTTTGTT+TGG - chr1_1:12821183-12821202 Msa0008850:intron 35.0%
GCTAGTAGTTGTAGAGTTTA+TGG + chr1_1:12821241-12821260 None:intergenic 35.0%
AATTCTAGGTCAAAACTTGC+AGG + chr1_1:12821368-12821387 None:intergenic 35.0%
!! GTGCTTGTTTCTGAAATTCT+AGG + chr1_1:12821382-12821401 None:intergenic 35.0%
CTTGATCTATCATGAAAAGG+GGG + chr1_1:12821421-12821440 None:intergenic 35.0%
GCTTGATCTATCATGAAAAG+GGG + chr1_1:12821422-12821441 None:intergenic 35.0%
CTGCTTGATCTATCATGAAA+AGG + chr1_1:12821424-12821443 None:intergenic 35.0%
CTTTGTATTCTCAACTATCG+TGG - chr1_1:12821473-12821492 Msa0008850:intron 35.0%
TTAGCGAGGAAAATGATCAT+CGG - chr1_1:12821539-12821558 Msa0008850:intron 35.0%
!! ATTTTTGGAAACTCGGTATC+CGG - chr1_1:12821753-12821772 Msa0008850:intron 35.0%
GAAAAGGTAAGACATAGTCA+AGG - chr1_1:12821818-12821837 Msa0008850:intron 35.0%
TAAGACATAGTCAAGGTTCT+TGG - chr1_1:12821825-12821844 Msa0008850:intron 35.0%
! TTTGTTGTCTGCATCACTTA+TGG - chr1_1:12821922-12821941 Msa0008850:intron 35.0%
!! AAGGAGCATTCATGTATATG+TGG + chr1_1:12822130-12822149 None:intergenic 35.0%
TCTCTTCACATTTCATAGGT+AGG - chr1_1:12822167-12822186 Msa0008850:intron 35.0%
GAAATCAATGTCAAGAATGG+TGG - chr1_1:12822274-12822293 Msa0008850:CDS 35.0%
TAAGCAAAAGAGGAACATAC+AGG + chr1_1:12822326-12822345 None:intergenic 35.0%
! TGTATGTTCCTCTTTTGCTT+AGG - chr1_1:12822325-12822344 Msa0008850:CDS 35.0%
!! TTTTTAGTGGTCGATGAACA+AGG - chr1_1:12822425-12822444 Msa0008850:intron 35.0%
CTTGAAATTGCAAAGATGAC+AGG - chr1_1:12822513-12822532 Msa0008850:intron 35.0%
ACAGTTTCTTCAATGTATCG+CGG - chr1_1:12822579-12822598 Msa0008850:intron 35.0%
CAACACTGCTTTCTCAATTT+AGG + chr1_1:12822750-12822769 None:intergenic 35.0%
CTCATTAAACTACGTTGATC+AGG + chr1_1:12823040-12823059 None:intergenic 35.0%
! GGTTAACGAAGTGTTAGATT+TGG + chr1_1:12823275-12823294 None:intergenic 35.0%
! GTTAACACGGTTTTTACACA+TGG + chr1_1:12823296-12823315 None:intergenic 35.0%
ACATTCATGCTTACTCTAAG+AGG + chr1_1:12823469-12823488 None:intergenic 35.0%
TTTCATGACATTCATTCTGC+AGG - chr1_1:12823555-12823574 Msa0008850:intron 35.0%
TTCATGACATTCATTCTGCA+GGG - chr1_1:12823556-12823575 Msa0008850:intron 35.0%
CAGATACTAATCCTACGATT+CGG - chr1_1:12823685-12823704 Msa0008850:intron 35.0%
CCCAAGTCTCTTGAATATAT+AGG - chr1_1:12823727-12823746 Msa0008850:CDS 35.0%
CCCTATATATTCAAGAGACT+TGG + chr1_1:12823731-12823750 None:intergenic 35.0%
AGTCTCTTGAATATATAGGG+AGG - chr1_1:12823731-12823750 Msa0008850:CDS 35.0%
ATCTGTATATGGGGATTATG+AGG - chr1_1:12823907-12823926 Msa0008850:CDS 35.0%
TCTGTATATGGGGATTATGA+GGG - chr1_1:12823908-12823927 Msa0008850:CDS 35.0%
TCTCTAATTCTGCTAGAACC+TGG + chr1_1:12820646-12820665 None:intergenic 40.0%
AGAAGAGGATACAAAGCAAG+TGG - chr1_1:12820682-12820701 Msa0008850:three_prime_UTR 40.0%
CTACAACAGCAACTGTATCA+TGG - chr1_1:12820752-12820771 Msa0008850:CDS 40.0%
TGCTAGAAAATACAGGGGTA+TGG - chr1_1:12820829-12820848 Msa0008850:CDS 40.0%
! GCTAGAAAATACAGGGGTAT+GGG - chr1_1:12820830-12820849 Msa0008850:CDS 40.0%
!! AGCTTTGGAAGATTTGCTTC+AGG - chr1_1:12820856-12820875 Msa0008850:CDS 40.0%
GCCAAACAAACACTTAATGG+AGG + chr1_1:12821187-12821206 None:intergenic 40.0%
TGTAGAGTTTATGGAACGTG+CGG + chr1_1:12821232-12821251 None:intergenic 40.0%
! GTGGGAAACATTGTTTTCTG+TGG - chr1_1:12821492-12821511 Msa0008850:intron 40.0%
AATCATGTGTAACTTCCCCA+CGG + chr1_1:12821676-12821695 None:intergenic 40.0%
!!! CATGTCGTTTTGGGTGAAAA+GGG + chr1_1:12821873-12821892 None:intergenic 40.0%
!!! CAACTGTTGCATGTCGTTTT+GGG + chr1_1:12821882-12821901 None:intergenic 40.0%
ACAGTTGCTTATGACGATGT+TGG - chr1_1:12821895-12821914 Msa0008850:intron 40.0%
CCACAAGTGAAGTTAACCTA+AGG + chr1_1:12821948-12821967 None:intergenic 40.0%
CCTTAGGTTAACTTCACTTG+TGG - chr1_1:12821945-12821964 Msa0008850:intron 40.0%
CAAAATGCTCTGTCTTCGAA+AGG + chr1_1:12821989-12822008 None:intergenic 40.0%
GGATATATAGGTGTTCTCCA+AGG - chr1_1:12822188-12822207 Msa0008850:intron 40.0%
! ACTGCACATAGGTTGAGAAT+CGG + chr1_1:12822244-12822263 None:intergenic 40.0%
! ATGTTCCTCTTTTGCTTAGG+AGG - chr1_1:12822328-12822347 Msa0008850:CDS 40.0%
AACAACCTCCTAAGCAAAAG+AGG + chr1_1:12822336-12822355 None:intergenic 40.0%
TAAGTCAGATCCAGAAAGCA+CGG - chr1_1:12822451-12822470 Msa0008850:intron 40.0%
AAAGATGACAGGTCTTTCAC+TGG - chr1_1:12822524-12822543 Msa0008850:intron 40.0%
AGTAACAATGGGGCAAACAT+GGG + chr1_1:12822635-12822654 None:intergenic 40.0%
AAGTAACAATGGGGCAAACA+TGG + chr1_1:12822636-12822655 None:intergenic 40.0%
TAAACCATCATGTGTCCATG+AGG - chr1_1:12823381-12823400 Msa0008850:intron 40.0%
! GAAAGTAAGTGTTGTCCTCA+TGG + chr1_1:12823399-12823418 None:intergenic 40.0%
CATGGTCATAAAAACACCGA+GGG + chr1_1:12823428-12823447 None:intergenic 40.0%
ACATGGTCATAAAAACACCG+AGG + chr1_1:12823429-12823448 None:intergenic 40.0%
! CATTGTGATTTGTGAGACTC+AGG - chr1_1:12823491-12823510 Msa0008850:intron 40.0%
AGGACTCTCTATCGACAAAT+CGG + chr1_1:12823590-12823609 None:intergenic 40.0%
TGTTTCATGACAGTCTCTTC+AGG + chr1_1:12823610-12823629 None:intergenic 40.0%
ACATGATATCCTCCAAAGCT+TGG - chr1_1:12823648-12823667 Msa0008850:intron 40.0%
!! TGGGTTGATGATCATCAGTA+AGG + chr1_1:12823711-12823730 None:intergenic 40.0%
AAGTGGTAAGCTTGAGTAGC+TGG - chr1_1:12820699-12820718 Msa0008850:exon 45.0%
AGTGGTAAGCTTGAGTAGCT+GGG - chr1_1:12820700-12820719 Msa0008850:exon 45.0%
! AGCATCTGGAGTTGACGAAA+AGG - chr1_1:12820727-12820746 Msa0008850:CDS 45.0%
ACATGTGTTTCGATACACGG+TGG + chr1_1:12821313-12821332 None:intergenic 45.0%
!!! GCATGTCGTTTTGGGTGAAA+AGG + chr1_1:12821874-12821893 None:intergenic 45.0%
!! GCAACTGTTGCATGTCGTTT+TGG + chr1_1:12821883-12821902 None:intergenic 45.0%
TCTGCATCACTTATGGCCTT+AGG - chr1_1:12821929-12821948 Msa0008850:intron 45.0%
GAGCGATTTGACAGTACAAG+AGG - chr1_1:12822215-12822234 Msa0008850:intron 45.0%
TCTCAACCTATGTGCAGTAC+TGG - chr1_1:12822246-12822265 Msa0008850:intron 45.0%
CCTTATCCAGTACTGCACAT+AGG + chr1_1:12822255-12822274 None:intergenic 45.0%
! CCTATGTGCAGTACTGGATA+AGG - chr1_1:12822252-12822271 Msa0008850:CDS 45.0%
! GTATCGCGGCATTGAATACA+TGG - chr1_1:12822593-12822612 Msa0008850:intron 45.0%
TTTCAGGCGTTCCAACTACA+TGG - chr1_1:12823151-12823170 Msa0008850:intron 45.0%
TTGTCCTCATGGACACATGA+TGG + chr1_1:12823388-12823407 None:intergenic 45.0%
GGACTCTCTATCGACAAATC+GGG + chr1_1:12823589-12823608 None:intergenic 45.0%
TTTCCCTTGAGTCCAAGCTT+TGG + chr1_1:12823663-12823682 None:intergenic 45.0%
AAAGCTTGGACTCAAGGGAA+AGG - chr1_1:12823662-12823681 Msa0008850:intron 45.0%
! CAGGGGTATGGGAATAGCTT+TGG - chr1_1:12820841-12820860 Msa0008850:CDS 50.0%
GAGGAAAATGATCATCGGCG+TGG - chr1_1:12821544-12821563 Msa0008850:intron 50.0%
TGTCAAATCGCTCTGCTCCT+TGG + chr1_1:12822208-12822227 None:intergenic 50.0%
! ATGGTGGCGAAATATGCTCG+AGG - chr1_1:12822290-12822309 Msa0008850:CDS 50.0%
! TCAGATCCAGAAAGCACGGA+AGG - chr1_1:12822455-12822474 Msa0008850:intron 50.0%
TCAAGACCTTCCGTGCTTTC+TGG + chr1_1:12822464-12822483 None:intergenic 50.0%
TCCTCCAAAGCTTGGACTCA+AGG - chr1_1:12823656-12823675 Msa0008850:intron 50.0%
CCTCCAAAGCTTGGACTCAA+GGG - chr1_1:12823657-12823676 Msa0008850:intron 50.0%
CATCAGTAAGGCCGAATCGT+AGG + chr1_1:12823699-12823718 None:intergenic 50.0%
!! AGTAGCTGGGCAGAAGCATC+TGG - chr1_1:12820713-12820732 Msa0008850:exon 55.0%
GTTTCGATACACGGTGGCGT+TGG + chr1_1:12821307-12821326 None:intergenic 55.0%
! CCCTTGAGTCCAAGCTTTGG+AGG + chr1_1:12823660-12823679 None:intergenic 55.0%
TAAACATGAGGTCGGGGCCG+TGG - chr1_1:12821656-12821675 Msa0008850:intron 60.0%
AAACATGAGGTCGGGGCCGT+GGG - chr1_1:12821657-12821676 Msa0008850:intron 60.0%
AACATGAGGTCGGGGCCGTG+GGG - chr1_1:12821658-12821677 Msa0008850:intron 65.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12820545 12824030 12820545 ID=Msa0008850;Name=Msa0008850
chr1_1 mRNA 12820545 12824030 12820545 ID=Msa0008850-mRNA-1;Parent=Msa0008850;Name=Msa0008850-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0.75|0.8|1|0.75|0.8|5|169|285
chr1_1 exon 12820545 12820998 12820545 ID=Msa0008850-mRNA-1:exon:4855;Parent=Msa0008850-mRNA-1
chr1_1 exon 12821961 12822143 12821961 ID=Msa0008850-mRNA-1:exon:4854;Parent=Msa0008850-mRNA-1
chr1_1 exon 12822250 12822390 12822250 ID=Msa0008850-mRNA-1:exon:4853;Parent=Msa0008850-mRNA-1
chr1_1 exon 12823698 12823928 12823698 ID=Msa0008850-mRNA-1:exon:4852;Parent=Msa0008850-mRNA-1
chr1_1 exon 12824013 12824030 12824013 ID=Msa0008850-mRNA-1:exon:4851;Parent=Msa0008850-mRNA-1
chr1_1 CDS 12824013 12824030 12824013 ID=Msa0008850-mRNA-1:cds;Parent=Msa0008850-mRNA-1
chr1_1 CDS 12823698 12823928 12823698 ID=Msa0008850-mRNA-1:cds;Parent=Msa0008850-mRNA-1
chr1_1 CDS 12822250 12822390 12822250 ID=Msa0008850-mRNA-1:cds;Parent=Msa0008850-mRNA-1
chr1_1 CDS 12821961 12822143 12821961 ID=Msa0008850-mRNA-1:cds;Parent=Msa0008850-mRNA-1
chr1_1 CDS 12820714 12820998 12820714 ID=Msa0008850-mRNA-1:cds;Parent=Msa0008850-mRNA-1
chr1_1 three_prime_UTR 12820545 12820713 12820545 ID=Msa0008850-mRNA-1:three_prime_utr;Parent=Msa0008850-mRNA-1
Gene Sequence

>Msa0008850

ATGTCAAAAGGTGTAAAGGTTCTAGCAGAATTAGAGAAAATTAGAACAGCTATAGAAGAGGATACAAAGCAAGTGGTAAGCTTGAGTAGCTGGGCAGAAGCATCTGGAGTTGACGAAAAGGTGCTACAACAGCAACTGTATCATGGCTATTATTGTAGAGATGAGTTGATACGCAGTACTCGTTCCTTAGTTCTATACTTTGCTAGAAAATACAGGGGTATGGGAATAGCTTTGGAAGATTTGCTTCAGGTAGGATATATAGGTGTTCTCCAAGGAGCAGAGCGATTTGACAGTACAAGAGGATACCGATTCTCAACCTATGTGCAGTACTGGATAAGGAAATCAATGTCAAGAATGGTGGCGAAATATGCTCGAGGAATCACTGTTCCTTGGTCGATGAACAAGGCAATAAGTCAGATCCAGAAAGCACGGAAGGTCTTGAAAAATACAACCATGAAATATCCCAATGATCTTGAAATTGCAAAGATGACAGGTCTTTCACTGGACAAAATCATGTCAGCTAGCCATTGTCTAAGAACAGTTTCTTCAATGTATCGCGGCATTGAATACATGGGTCATATGCCCGATTTGTCGATAGAGAGTCCTGAAGAGACTGTCATGAAACAGCACATTAAGAAAGATATACATGATATCCTCCAAAGCTTGGACTCAAGGGAAAGGCAGATACTAATCCTACGATTCGGCCTTACTGATGATCATCAACCCAAGTCTCTTGAATATATAGGGAGGATTTTCAAAGTTAGCAAAGAATGGATAAGGAAAATAGAGAAAAAAGCTCTCACAAAATTAAAGAATGAAACAAACATCTCAAAGTTGAATTATTATTTGGATCTGTAG

Protein sequence

>Msa0008850

MSKGVKVLAELEKIRTAIEEDTKQVVSLSSWAEASGVDEKVLQQQLYHGYYCRDELIRSTRSLVLYFARKYRGMGIALEDLLQVGYIGVLQGAERFDSTRGYRFSTYVQYWIRKSMSRMVAKYARGITVPWSMNKAISQIQKARKVLKNTTMKYPNDLEIAKMTGLSLDKIMSASHCLRTVSSMYRGIEYMGHMPDLSIESPEETVMKQHIKKDIHDILQSLDSRERQILILRFGLTDDHQPKSLEYIGRIFKVSKEWIRKIEKKALTKLKNETNISKLNYYLDL*