AlfalfaGEDB | Msa1234400

M. sativa cultivar zhongmu-4 / Msa1234400

KEGG: K01051
GO: GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772
PFAM: PF04043.18

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234400	XP_003627458.1	87.770	417	21	3	1	387	1	417	0.0	725

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234400	sp\|Q43143\|PMEU1_SOLLC	57.960	402	130	7	17	387	18	411	2.64e-150	440

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0174450	Msa1234400	0.817581	3.061524e-52	-8.615850e-47
Msa0222560	Msa1234400	0.834174	3.490742e-56	-8.615850e-47
Msa0298500	Msa1234400	0.800144	1.654282e-48	-8.615850e-47
Msa0301820	Msa1234400	0.810192	1.302362e-50	-8.615850e-47
Msa0390970	Msa1234400	0.824885	6.332996e-54	-8.615850e-47
Msa0430260	Msa1234400	0.801583	8.407030e-49	-8.615850e-47
Msa0435420	Msa1234400	0.813907	2.018546e-51	-8.615850e-47
Msa0435570	Msa1234400	0.825223	5.270875e-54	-8.615850e-47
Msa0474730	Msa1234400	0.805443	1.331544e-49	-8.615850e-47
Msa0509550	Msa1234400	0.802241	6.160793e-49	-8.615850e-47

Showing 1 to 10 of 24 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234400	MtrunA17_Chr8g0345281	87.770	417	21	3	1	387	1	417	0.0	725
Msa1234400	MtrunA17_Chr7g0269541	38.674	362	179	11	23	369	7	340	9.29e-59	200
Msa1234400	MtrunA17_Chr1g0147051	33.244	373	214	11	16	369	35	391	3.03e-52	184
Msa1234400	MtrunA17_Chr7g0233771	37.500	296	146	9	78	359	52	322	1.95e-46	167
Msa1234400	MtrunA17_Chr7g0272151	34.211	380	204	15	8	363	1	358	1.92e-44	162
Msa1234400	MtrunA17_Chr8g0391281	34.114	299	173	6	71	363	33	313	2.71e-44	156
Msa1234400	MtrunA17_Chr3g0126771	30.986	355	219	9	14	358	28	366	4.44e-44	161
Msa1234400	MtrunA17_Chr7g0233831	32.945	343	193	11	23	360	14	324	9.43e-43	157
Msa1234400	MtrunA17_Chr4g0011771	36.709	316	157	11	60	369	20	298	4.30e-42	154
Msa1234400	MtrunA17_Chr7g0233801	36.513	304	151	11	78	364	52	330	3.09e-41	153

Showing 1 to 10 of 75 entries

Previous1 2 3 4 5…8Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1234400	AT3G14310.1	58.134	418	115	8	16	387	17	420	8.47e-145	424
Msa1234400	AT1G53830.1	56.974	423	138	8	1	387	1	415	6.93e-143	419
Msa1234400	AT3G49220.2	33.060	366	212	13	13	371	83	422	2.21e-51	178
Msa1234400	AT5G53370.1	32.791	369	217	13	17	379	29	372	1.08e-46	169
Msa1234400	AT5G53370.2	32.791	369	217	13	17	379	65	408	2.23e-46	168
Msa1234400	AT3G49220.1	32.065	368	214	12	13	369	38	380	1.38e-45	166
Msa1234400	AT3G49220.3	32.065	368	214	12	13	369	83	425	2.29e-45	166
Msa1234400	AT5G49180.1	33.053	357	215	13	10	359	2	341	2.14e-43	159
Msa1234400	AT4G02320.1	35.764	288	144	8	90	360	26	289	7.55e-41	151
Msa1234400	AT3G14300.1	34.375	320	190	9	53	364	442	749	3.06e-40	153

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

Find 79 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAACAATCCCTCGC+CGG	0.613047	8_2:+11736720	Msa1234400:CDS
AAAGGCGGACGTGGTGGTGG+CGG	0.451157	8_2:+11737538	Msa1234400:CDS
AAATAGAAAATTACTGGAGG+AGG	0.542164	8_2:+11737448	Msa1234400:CDS
AAATTACTGGAGGAGGAAAA+TGG	0.308689	8_2:+11737455	Msa1234400:CDS
AACCAATCAGGTAACTTGTT+TGG	0.361755	8_2:+11737259	Msa1234400:CDS
AACCTTCCTCACTTCTTTAT+CGG	0.269229	8_2:-11737303	None:intergenic
AAGACTACTTCAAGGATCGA+CGG	0.654346	8_2:+11737514	Msa1234400:CDS
AAGAGCAACTTTCTCTCTTT+TGG	0.237698	8_2:-11737102	None:intergenic
AAGTTCCGCCATAACCAATC+AGG	0.485134	8_2:+11737247	Msa1234400:CDS
AATCAGGTAACTTGTTTGGA+TGG	0.473232	8_2:+11737263	Msa1234400:CDS

Showing 1 to 10 of 79 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTGAGTTTATGAGTTATGTT+TGG	-	chr8_2:11736981-11737000	None:intergenic	30.0%
ACAATGAAATCACATCTTTG+TGG	-	chr8_2:11737007-11737026	None:intergenic	30.0%
AGAATTTGAACAAACCAACA+TGG	+	chr8_2:11737409-11737428	Msa1234400:CDS	30.0%
AAATAGAAAATTACTGGAGG+AGG	+	chr8_2:11737448-11737467	Msa1234400:CDS	30.0%
TATCTCTTACTACTCTTCAA+AGG	-	chr8_2:11737614-11737633	None:intergenic	30.0%
GTGAGTTTATGAGTTATGTT+TGG	-	chr8_2:11736981-11737000	None:intergenic	30.0%
ACAATGAAATCACATCTTTG+TGG	-	chr8_2:11737007-11737026	None:intergenic	30.0%
AGAATTTGAACAAACCAACA+TGG	+	chr8_2:11737409-11737428	Msa1234400:CDS	30.0%
AAATAGAAAATTACTGGAGG+AGG	+	chr8_2:11737448-11737467	Msa1234400:CDS	30.0%
TATCTCTTACTACTCTTCAA+AGG	-	chr8_2:11737614-11737633	None:intergenic	30.0%

Showing 1 to 10 of 192 entries

Previous1 2 3 4 5…20Next

Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	11736714	11737910	11736714	ID=Msa1234400;Name=Msa1234400
chr8_2	mRNA	11736714	11737910	11736714	ID=Msa1234400-mRNA-1;Parent=Msa1234400;Name=Msa1234400-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|398
chr8_2	exon	11736714	11737910	11736714	ID=Msa1234400-mRNA-1:exon:4582;Parent=Msa1234400-mRNA-1
chr8_2	CDS	11736714	11737910	11736714	ID=Msa1234400-mRNA-1:cds;Parent=Msa1234400-mRNA-1

Gene Sequence

>Msa1234400

ATGAACAAAATAAAACAATCCCTCGCCGGAATCTCGAATTCCGGCAACAAGAAAAAACTCCTCATCTCCCTCTTTACAACCCTTCTCATTGTAGCTTCCATAGTAGCCATTGTTGCATCAACAACCAAAAACTCCAACAAAAGCAAAAACAACAGCATTGCTTCATCTTCTCTTTCACTCTCTCACCATTCTCACGCCATACTCAAATCTGCTTGCACCGCCACTCTCTACCCTGAACTATGTTTCTCAGCCATTTCCTCTGAGCCAAACATAACTCATAAACTCACCAACCACAAAGATGTGATTTCATTGTCTTTAAACATCACAACTAGAGCCGTTGAACACAATTACTTCACCGTCGAAAAACTTCTTTTGCGAAAAACTCTTACCAAAAGAGAGAAAGTTGCTCTTCATGATTGTTTGGAAACTATTGATGAAACACTAGATGAGCTCAAAGAAGCACAAAATGATCTTGTACTGTACCCGAGTAAAAAGACACTTTATCAACATGCTGATGATCTTAAAACACTCATAAGTTCCGCCATAACCAATCAGGTAACTTGTTTGGATGGATTCTCTCACGACGATGCCGATAAAGAAGTGAGGAAGGTTCTACAAGCAGGCCAAATTCACGTGGAGCACATGTGTAGTAATGCATTAGCCATGACTAAGAACATGACAGACAAAGACATAGCAGAATTTGAACAAACCAACATGGTATTGGGAAGTAACAAAAATAGAAAATTACTGGAGGAGGAAAATGGGGTGGGTTGGCCGGAGTGGATATCGGCGGGGGACAGAAGACTACTTCAAGGATCGACGGTAAAGGCGGACGTGGTGGTGGCGGCAGACGGTAGTGGGAACTTTAAGACAGTGTCTGAGGCTGTGGCTGCTGCTCCTTTGAAGAGTAGTAAGAGATATGTTATTAAGATAAAAGCTGGGGTGTATAAAGAAAATGTGGAGGTGCCAAAGAAGAAAACTAATATTATGTTTTTGGGAGATGGTAGAACTAATACTATTATTACTGGTAGTAGAAATGTTGTTGATGGAAGCACCACTTTTCATTCAGCCACTGTCGGTAAGTTTTTCTTCACTTCAATCACTTTCATTTTTTTTACTTATACATATGTTATATATATTCATAATAATGCAGTTTTTTTTGGTATGTTATCCATCCATTTTAAAAAATTAAAATGA

Protein sequence

>Msa1234400

MNKIKQSLAGISNSGNKKKLLISLFTTLLIVASIVAIVASTTKNSNKSKNNSIASSSLSLSHHSHAILKSACTATLYPELCFSAISSEPNITHKLTNHKDVISLSLNITTRAVEHNYFTVEKLLLRKTLTKREKVALHDCLETIDETLDELKEAQNDLVLYPSKKTLYQHADDLKTLISSAITNQVTCLDGFSHDDADKEVRKVLQAGQIHVEHMCSNALAMTKNMTDKDIAEFEQTNMVLGSNKNRKLLEEENGVGWPEWISAGDRRLLQGSTVKADVVVAADGSGNFKTVSEAVAAAPLKSSKRYVIKIKAGVYKENVEVPKKKTNIMFLGDGRTNTIITGSRNVVDGSTTFHSATVGKFFFTSITFIFFTYTYVIYIHNNAVFFGMLSIHFKKLK*