Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623910 | XP_003606273.1 | 91.459 | 562 | 15 | 2 | 1 | 549 | 1 | 542 | 0.0 | 1030 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623910 | sp|Q9FNI7|CSLA2_ARATH | 72.500 | 560 | 107 | 5 | 5 | 549 | 5 | 532 | 0.0 | 818 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623910 | G7JM38 | 91.459 | 562 | 15 | 2 | 1 | 549 | 1 | 542 | 0.0 | 1030 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054880 | Msa0623910 | 0.817753 | 2.800377e-52 | -8.615850e-47 |
| Msa0081520 | Msa0623910 | 0.845796 | 3.247130e-59 | -8.615850e-47 |
| Msa0623900 | Msa0623910 | 0.966468 | 5.821775e-126 | -8.615850e-47 |
| Msa0623910 | Msa0626450 | 0.848373 | 6.389353e-60 | -8.615850e-47 |
| Msa0623910 | Msa0626490 | 0.847592 | 1.049107e-59 | -8.615850e-47 |
| Msa0623910 | Msa0640840 | 0.838485 | 2.796976e-57 | -8.615850e-47 |
| Msa0623910 | Msa0664600 | 0.848404 | 6.262496e-60 | -8.615850e-47 |
| Msa0623910 | Msa0681260 | 0.935431 | 8.568529e-97 | -8.615850e-47 |
| Msa0623910 | Msa0681280 | 0.936382 | 1.898093e-97 | -8.615850e-47 |
| Msa0623910 | Msa0711400 | 0.866916 | 2.009043e-65 | -8.615850e-47 |
| Msa0623910 | Msa0738040 | 0.802651 | 5.071147e-49 | -8.615850e-47 |
| Msa0623910 | Msa0751870 | 0.814249 | 1.696368e-51 | -8.615850e-47 |
| Msa0623910 | Msa0759650 | 0.814890 | 1.223465e-51 | -8.615850e-47 |
| Msa0623910 | Msa0801210 | 0.802180 | 6.341193e-49 | -8.615850e-47 |
| Msa0623910 | Msa0839560 | 0.803853 | 2.858428e-49 | -8.615850e-47 |
| Msa0623910 | Msa0856050 | 0.812350 | 4.430394e-51 | -8.615850e-47 |
| Msa0623910 | Msa0860620 | 0.803672 | 3.117332e-49 | -8.615850e-47 |
| Msa0623910 | Msa0876310 | 0.801889 | 7.277649e-49 | -8.615850e-47 |
| Msa0623910 | Msa0880270 | 0.803241 | 3.828758e-49 | -8.615850e-47 |
| Msa0623910 | Msa0981320 | 0.829958 | 3.845985e-55 | -8.615850e-47 |
| Msa0623910 | Msa1072960 | 0.803777 | 2.965401e-49 | -8.615850e-47 |
| Msa0623910 | Msa1113340 | 0.816972 | 4.197696e-52 | -8.615850e-47 |
| Msa0623910 | Msa1160910 | 0.816389 | 5.671963e-52 | -8.615850e-47 |
| Msa0623910 | Msa1160920 | 0.812510 | 4.089152e-51 | -8.615850e-47 |
| Msa0623910 | Msa1173280 | 0.807153 | 5.808505e-50 | -8.615850e-47 |
| Msa0623910 | Msa1173330 | 0.834284 | 3.275350e-56 | -8.615850e-47 |
| Msa0623910 | Msa1174840 | 0.827647 | 1.393737e-54 | -8.615850e-47 |
| Msa0623910 | Msa1206230 | 0.809920 | 1.490706e-50 | -8.615850e-47 |
| Msa0623910 | Msa1232710 | 0.831640 | 1.488926e-55 | -8.615850e-47 |
| Msa0623910 | Msa1234400 | 0.809452 | 1.879506e-50 | -8.615850e-47 |
| Msa0623910 | Msa1234710 | 0.803767 | 2.979721e-49 | -8.615850e-47 |
| Msa0623910 | Msa1306640 | 0.801151 | 1.030999e-48 | -8.615850e-47 |
| Msa0623910 | Msa1307570 | 0.835793 | 1.364216e-56 | -8.615850e-47 |
| Msa0623910 | Msa1313300 | 0.837238 | 5.847890e-57 | -8.615850e-47 |
| Msa0623910 | Msa1315560 | 0.803729 | 3.034063e-49 | -8.615850e-47 |
| Msa0623910 | Msa1323040 | 0.802067 | 6.687730e-49 | -8.615850e-47 |
| Msa0623910 | Msa1356830 | 0.840254 | 9.710906e-58 | -8.615850e-47 |
| Msa0623910 | Msa1359490 | 0.823436 | 1.386929e-53 | -8.615850e-47 |
| Msa0623910 | Msa1371910 | 0.885981 | 5.085543e-72 | -8.615850e-47 |
| Msa0623910 | Msa1427110 | 0.801385 | 9.232314e-49 | -8.615850e-47 |
| Msa0623910 | Msa1437940 | 0.837742 | 4.343630e-57 | -8.615850e-47 |
| Msa0623910 | Msa1440960 | 0.850815 | 1.330494e-60 | -8.615850e-47 |
| Msa0623910 | Msa1449930 | 0.840528 | 8.234783e-58 | -8.615850e-47 |
| Msa0623910 | Msa1459460 | 0.802311 | 5.959521e-49 | -8.615850e-47 |
| Msa0136650 | Msa0623910 | 0.835172 | 1.958305e-56 | -8.615850e-47 |
| Msa0173890 | Msa0623910 | 0.832007 | 1.208157e-55 | -8.615850e-47 |
| Msa0174450 | Msa0623910 | 0.846078 | 2.722231e-59 | -8.615850e-47 |
| Msa0180930 | Msa0623910 | 0.802024 | 6.826994e-49 | -8.615850e-47 |
| Msa0196190 | Msa0623910 | 0.802609 | 5.172441e-49 | -8.615850e-47 |
| Msa0206840 | Msa0623910 | 0.818236 | 2.178005e-52 | -8.615850e-47 |
| Msa0222560 | Msa0623910 | 0.838297 | 3.126664e-57 | -8.615850e-47 |
| Msa0225680 | Msa0623910 | 0.800652 | 1.303547e-48 | -8.615850e-47 |
| Msa0375640 | Msa0623910 | 0.818942 | 1.506617e-52 | -8.615850e-47 |
| Msa0380620 | Msa0623910 | 0.821234 | 4.499843e-53 | -8.615850e-47 |
| Msa0390970 | Msa0623910 | 0.813692 | 2.250218e-51 | -8.615850e-47 |
| Msa0392380 | Msa0623910 | 0.832258 | 1.047676e-55 | -8.615850e-47 |
| Msa0424160 | Msa0623910 | 0.824524 | 7.703722e-54 | -8.615850e-47 |
| Msa0430260 | Msa0623910 | 0.842875 | 1.979209e-58 | -8.615850e-47 |
| Msa0435420 | Msa0623910 | 0.813896 | 2.028992e-51 | -8.615850e-47 |
| Msa0435570 | Msa0623910 | 0.814212 | 1.727966e-51 | -8.615850e-47 |
| Msa0440320 | Msa0623910 | 0.823518 | 1.327012e-53 | -8.615850e-47 |
| Msa0474730 | Msa0623910 | 0.808427 | 3.114556e-50 | -8.615850e-47 |
| Msa0249540 | Msa0623910 | 0.845082 | 5.069541e-59 | -8.615850e-47 |
| Msa0292400 | Msa0623910 | 0.804275 | 2.336280e-49 | -8.615850e-47 |
| Msa0298500 | Msa0623910 | 0.820882 | 5.424116e-53 | -8.615850e-47 |
| Msa0301820 | Msa0623910 | 0.822876 | 1.873142e-53 | -8.615850e-47 |
| Msa0307270 | Msa0623910 | 0.813303 | 2.740245e-51 | -8.615850e-47 |
| Msa0309720 | Msa0623910 | 0.803435 | 3.490483e-49 | -8.615850e-47 |
| Msa0487500 | Msa0623910 | 0.830148 | 3.456515e-55 | -8.615850e-47 |
| Msa0500380 | Msa0623910 | 0.842078 | 3.220739e-58 | -8.615850e-47 |
| Msa0515800 | Msa0623910 | 0.826667 | 2.392580e-54 | -8.615850e-47 |
| Msa0519840 | Msa0623910 | 0.803258 | 3.798993e-49 | -8.615850e-47 |
| Msa0546110 | Msa0623910 | 0.908327 | 1.930634e-81 | -8.615850e-47 |
| Msa0573380 | Msa0623910 | 0.819737 | 9.923468e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623910 | MtrunA17_Chr4g0027221 | 91.459 | 562 | 15 | 2 | 1 | 549 | 1 | 542 | 0.0 | 1030 |
| Msa0623910 | MtrunA17_Chr7g0265711 | 61.913 | 554 | 164 | 5 | 10 | 549 | 9 | 529 | 0.0 | 725 |
| Msa0623910 | MtrunA17_Chr1g0179441 | 61.296 | 540 | 163 | 3 | 23 | 549 | 14 | 520 | 0.0 | 702 |
| Msa0623910 | MtrunA17_Chr1g0198111 | 62.409 | 548 | 159 | 6 | 16 | 549 | 13 | 527 | 0.0 | 688 |
| Msa0623910 | MtrunA17_Chr1g0179421 | 58.877 | 552 | 180 | 7 | 12 | 549 | 2 | 520 | 0.0 | 679 |
| Msa0623910 | MtrunA17_Chr1g0179381 | 58.152 | 552 | 183 | 5 | 12 | 549 | 2 | 519 | 0.0 | 674 |
| Msa0623910 | MtrunA17_Chr7g0264621 | 51.246 | 562 | 223 | 6 | 1 | 549 | 4 | 527 | 0.0 | 593 |
| Msa0623910 | MtrunA17_Chr1g0179391 | 61.782 | 348 | 100 | 3 | 141 | 475 | 1 | 328 | 5.40e-162 | 464 |
| Msa0623910 | MtrunA17_Chr4g0000581 | 42.763 | 456 | 218 | 6 | 64 | 501 | 202 | 632 | 4.82e-121 | 372 |
| Msa0623910 | MtrunA17_Chr6g0451381 | 41.087 | 460 | 228 | 5 | 26 | 470 | 138 | 569 | 6.25e-121 | 370 |
| Msa0623910 | MtrunA17_Chr8g0339101 | 36.000 | 550 | 301 | 4 | 28 | 549 | 175 | 701 | 1.14e-120 | 371 |
| Msa0623910 | MtrunA17_Chr3g0139081 | 37.770 | 556 | 282 | 8 | 28 | 546 | 155 | 683 | 1.42e-119 | 368 |
| Msa0623910 | MtrunA17_Chr3g0135191 | 42.000 | 450 | 223 | 4 | 33 | 470 | 180 | 603 | 1.58e-118 | 365 |
| Msa0623910 | MtrunA17_Chr1g0179401 | 55.303 | 132 | 58 | 1 | 12 | 142 | 2 | 133 | 2.92e-46 | 159 |
| Msa0623910 | MtrunA17_Chr4g0064791 | 39.850 | 133 | 73 | 2 | 73 | 198 | 68 | 200 | 1.25e-23 | 99.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623910 | AT5G22740.1 | 72.500 | 560 | 107 | 5 | 5 | 549 | 5 | 532 | 0.0 | 818 |
| Msa0623910 | AT5G03760.1 | 62.816 | 554 | 159 | 6 | 10 | 549 | 10 | 530 | 0.0 | 722 |
| Msa0623910 | AT1G23480.1 | 55.839 | 548 | 195 | 5 | 16 | 549 | 39 | 553 | 0.0 | 638 |
| Msa0623910 | AT1G23480.2 | 55.839 | 548 | 195 | 5 | 16 | 549 | 39 | 553 | 0.0 | 638 |
| Msa0623910 | AT1G23480.3 | 57.782 | 514 | 170 | 5 | 50 | 549 | 1 | 481 | 0.0 | 624 |
| Msa0623910 | AT4G13410.1 | 52.727 | 550 | 208 | 6 | 12 | 547 | 26 | 537 | 0.0 | 615 |
| Msa0623910 | AT5G16190.3 | 54.291 | 536 | 196 | 4 | 26 | 547 | 4 | 504 | 0.0 | 604 |
| Msa0623910 | AT2G35650.1 | 52.542 | 531 | 203 | 5 | 19 | 536 | 42 | 536 | 0.0 | 592 |
| Msa0623910 | AT5G16190.4 | 51.142 | 569 | 196 | 5 | 26 | 547 | 4 | 537 | 0.0 | 588 |
| Msa0623910 | AT1G24070.1 | 52.930 | 529 | 202 | 4 | 32 | 547 | 58 | 552 | 0.0 | 584 |
| Msa0623910 | AT2G35650.4 | 54.200 | 500 | 180 | 5 | 50 | 536 | 1 | 464 | 0.0 | 573 |
| Msa0623910 | AT2G35650.2 | 54.200 | 500 | 180 | 5 | 50 | 536 | 1 | 464 | 0.0 | 573 |
| Msa0623910 | AT5G16190.2 | 58.079 | 458 | 159 | 2 | 26 | 470 | 4 | 441 | 0.0 | 565 |
| Msa0623910 | AT5G16190.1 | 55.439 | 478 | 164 | 4 | 84 | 547 | 1 | 443 | 0.0 | 556 |
| Msa0623910 | AT3G56000.1 | 50.189 | 530 | 211 | 8 | 35 | 546 | 29 | 523 | 0.0 | 533 |
| Msa0623910 | AT4G16590.1 | 47.026 | 538 | 204 | 5 | 23 | 547 | 51 | 520 | 3.55e-179 | 515 |
| Msa0623910 | AT1G23480.4 | 57.245 | 421 | 134 | 4 | 142 | 549 | 21 | 408 | 7.83e-175 | 500 |
| Msa0623910 | AT4G13410.2 | 59.889 | 359 | 123 | 2 | 12 | 369 | 26 | 364 | 1.02e-163 | 471 |
| Msa0623910 | AT4G13410.3 | 53.865 | 414 | 140 | 5 | 147 | 547 | 1 | 376 | 1.93e-163 | 469 |
| Msa0623910 | AT2G35650.3 | 53.317 | 407 | 141 | 5 | 143 | 536 | 8 | 378 | 3.64e-156 | 452 |
| Msa0623910 | AT1G24070.2 | 60.651 | 338 | 113 | 1 | 32 | 369 | 58 | 375 | 7.97e-155 | 449 |
| Msa0623910 | AT3G07330.1 | 37.862 | 552 | 290 | 4 | 28 | 549 | 153 | 681 | 1.20e-127 | 389 |
| Msa0623910 | AT3G07330.2 | 37.862 | 552 | 290 | 4 | 28 | 549 | 153 | 681 | 1.20e-127 | 389 |
| Msa0623910 | AT4G31590.1 | 41.164 | 481 | 242 | 6 | 6 | 470 | 138 | 593 | 4.59e-126 | 385 |
| Msa0623910 | AT3G28180.1 | 43.709 | 453 | 208 | 6 | 33 | 470 | 145 | 565 | 1.65e-125 | 383 |
| Msa0623910 | AT4G07960.1 | 37.545 | 554 | 285 | 9 | 28 | 549 | 174 | 698 | 3.21e-120 | 370 |
| Msa0623910 | AT4G07960.2 | 37.545 | 554 | 285 | 9 | 28 | 549 | 174 | 698 | 3.21e-120 | 370 |
| Msa0623910 | AT2G24630.1 | 36.760 | 574 | 305 | 9 | 6 | 546 | 138 | 686 | 3.70e-120 | 370 |
| Msa0623910 | AT2G24630.2 | 36.760 | 574 | 305 | 9 | 6 | 546 | 138 | 686 | 3.70e-120 | 370 |
Find 144 sgRNAs with CRISPR-Local
Find 339 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTGACCTTTCCATAAATT+TGG | 0.095743 | 4_3:+1646168 | None:intergenic |
| TTACGAAACTTTAACGATTT+TGG | 0.107510 | 4_3:+1645503 | None:intergenic |
| CACCTCTTGTTTCTCTAATT+TGG | 0.108542 | 4_3:+1649569 | None:intergenic |
| AAATTATTTGTCACAAATTA+TGG | 0.147142 | 4_3:+1645151 | None:intergenic |
| CAAACATCGACCGTTGAATT+TGG | 0.165277 | 4_3:-1647054 | Msa0623910:CDS |
| ACCAAATCTACAGTTAATTT+AGG | 0.179982 | 4_3:-1645398 | Msa0623910:three_prime_UTR |
| ATAATTTGTGACAAATAATT+TGG | 0.181703 | 4_3:-1645149 | Msa0623910:three_prime_UTR |
| GAAAACAAGATCCAAATTTA+TGG | 0.196456 | 4_3:-1646179 | Msa0623910:CDS |
| CTGAGGTTCATGTTCCAATT+TGG | 0.199327 | 4_3:-1646579 | Msa0623910:CDS |
| CGTACCAAGGCGACCCTAAT+TGG | 0.200533 | 4_3:-1646331 | Msa0623910:CDS |
| CATGAGCAGGCTTAATTTCT+TGG | 0.200959 | 4_3:-1645678 | Msa0623910:intron |
| TTTCATGGAAAGAGTTTATA+TGG | 0.210110 | 4_3:-1650547 | Msa0623910:CDS |
| CTAATTGGTTTGCTAGAATA+TGG | 0.211369 | 4_3:-1646316 | Msa0623910:CDS |
| CATATTCTAGCAAACCAATT+AGG | 0.216535 | 4_3:+1646317 | None:intergenic |
| TGAGGTTCATGTTCCAATTT+GGG | 0.231288 | 4_3:-1646578 | Msa0623910:CDS |
| TTCCTTTACTTGCCCATCTT+TGG | 0.241277 | 4_3:+1649605 | None:intergenic |
| TCAGCTACTCATGCTTTCTT+TGG | 0.243047 | 4_3:-1647558 | Msa0623910:CDS |
| GAGCGGCTTGTGGGCTTTCA+TGG | 0.247561 | 4_3:-1650232 | Msa0623910:CDS |
| ACCTTCTCAATTGTAGGATT+TGG | 0.248263 | 4_3:-1645560 | Msa0623910:CDS |
| CCAAATCTACAGTTAATTTA+GGG | 0.250194 | 4_3:-1645397 | Msa0623910:three_prime_UTR |
| TCGCTGTTCGAGCAAGTCTT+AGG | 0.257915 | 4_3:-1647221 | Msa0623910:CDS |
| AAATCTCAACCGCTGAATTA+AGG | 0.277787 | 4_3:+1647025 | None:intergenic |
| ATGCAGGGACGGCCGGTATT+TGG | 0.277859 | 4_3:-1647308 | Msa0623910:intron |
| CCCTAAATTAACTGTAGATT+TGG | 0.280944 | 4_3:+1645397 | None:intergenic |
| CCTTGAACAAGAGCAATTTC+AGG | 0.303932 | 4_3:+1649409 | None:intergenic |
| GACTCTGGTATATAAACTTT+AGG | 0.307674 | 4_3:+1650693 | None:intergenic |
| CATGCTTTCTTTGGCTTCAA+TGG | 0.310696 | 4_3:-1647549 | Msa0623910:intron |
| TTTATTGTTGTTGTTGTTAA+CGG | 0.315731 | 4_3:+1646252 | None:intergenic |
| TAGTTGTGCGCAAAGATATC+TGG | 0.325326 | 4_3:-1644974 | Msa0623910:three_prime_UTR |
| CAAGTCAAATTAAGATGATA+TGG | 0.326108 | 4_3:-1650647 | Msa0623910:CDS |
| CCTGAAATTGCTCTTGTTCA+AGG | 0.326116 | 4_3:-1649409 | Msa0623910:CDS |
| TGTAAAGAGAAAGAAATTAA+AGG | 0.330426 | 4_3:-1650765 | Msa0623910:five_prime_UTR |
| GTTCAAGGTCGTTGGAGATT+TGG | 0.339973 | 4_3:-1649394 | Msa0623910:intron |
| ATTGATGACAATGAAAATCT+TGG | 0.341186 | 4_3:+1645358 | None:intergenic |
| ACCTTAACCTTCTCAATTGT+AGG | 0.346965 | 4_3:-1645566 | Msa0623910:CDS |
| TCTGTTTGTTTCACATTCAT+AGG | 0.354373 | 4_3:-1650818 | Msa0623910:five_prime_UTR |
| CAGAACAACAGTTGAAGATA+TGG | 0.365102 | 4_3:-1647247 | Msa0623910:CDS |
| AAATGGCGATGGAGATTATA+AGG | 0.367253 | 4_3:-1646837 | Msa0623910:CDS |
| AAGAATGCAAGAGATGTCTT+TGG | 0.370356 | 4_3:-1647613 | Msa0623910:CDS |
| TCATATTTATAACGTTGTTC+AGG | 0.375349 | 4_3:+1650486 | None:intergenic |
| ATGTAAACAGCTCCCCAAAT+TGG | 0.378565 | 4_3:+1646565 | None:intergenic |
| ATTGTAGGATTTGGTTATGT+TGG | 0.379370 | 4_3:-1645551 | Msa0623910:CDS |
| TTCTACTGACCCTGTTGTTA+AGG | 0.383212 | 4_3:-1650174 | Msa0623910:intron |
| CGCTGTTCGAGCAAGTCTTA+GGG | 0.385066 | 4_3:-1647220 | Msa0623910:CDS |
| CTGAATGCTCTCAGAGTACT+TGG | 0.388265 | 4_3:+1646907 | None:intergenic |
| AGAGAGAGATCTCATCAAAA+TGG | 0.400388 | 4_3:-1650727 | Msa0623910:exon |
| TCCTACAATTGAGAAGGTTA+AGG | 0.401066 | 4_3:+1645565 | None:intergenic |
| ATATTCTAGCAAACCAATTA+GGG | 0.403344 | 4_3:+1646318 | None:intergenic |
| TTTCGATTGGAGCGGCTTGT+GGG | 0.405849 | 4_3:-1650241 | Msa0623910:CDS |
| TTGAGAAGGTTAAGGTTTGA+AGG | 0.414275 | 4_3:+1645573 | None:intergenic |
| GGAATTTGAACAAGAACAAC+AGG | 0.417109 | 4_3:+1650423 | None:intergenic |
| ATGGCTCTTCTAAGAAAATC+AGG | 0.417142 | 4_3:+1649451 | None:intergenic |
| CAGTAGAATCATCAAGTACT+TGG | 0.417324 | 4_3:+1650189 | None:intergenic |
| TATGGAAAACTAATAAATAA+AGG | 0.423758 | 4_3:+1645169 | None:intergenic |
| CACAAGACCATCTGTGCTGC+TGG | 0.427142 | 4_3:+1646881 | None:intergenic |
| TTCTTTGACAACATTATTTG+TGG | 0.432930 | 4_3:-1645063 | Msa0623910:three_prime_UTR |
| TTCACAGTTGAGCAAGAAGT+TGG | 0.434090 | 4_3:-1647582 | Msa0623910:CDS |
| GTAAAGAGAAAGAAATTAAA+GGG | 0.434123 | 4_3:-1650764 | Msa0623910:five_prime_UTR |
| CAGGTTTATAAGGTTTCGAT+TGG | 0.436880 | 4_3:-1650254 | Msa0623910:CDS |
| AATGCAGCAAATGGTGGAAA+TGG | 0.437156 | 4_3:-1649632 | Msa0623910:intron |
| CTTCTTGCTCAACTGTGAAA+TGG | 0.437858 | 4_3:+1647586 | None:intergenic |
| AGGTTAAGGTTTGAAGGAAA+AGG | 0.445570 | 4_3:+1645579 | None:intergenic |
| GTTTCGATTGGAGCGGCTTG+TGG | 0.451144 | 4_3:-1650242 | Msa0623910:CDS |
| AAAGGATCCAATAGAACAAA+AGG | 0.455383 | 4_3:+1646377 | None:intergenic |
| TTGCTCTTGTTCAAGGTCGT+TGG | 0.464965 | 4_3:-1649402 | Msa0623910:CDS |
| TAATTGGTTTGCTAGAATAT+GGG | 0.467443 | 4_3:-1646315 | Msa0623910:CDS |
| TCAGGATTACCAACAAGAAA+AGG | 0.469315 | 4_3:+1649427 | None:intergenic |
| ACCTCTCTTTCATTGAACAT+TGG | 0.472020 | 4_3:+1650402 | None:intergenic |
| TTTGTACCTTGGAGACCTCC+AGG | 0.476674 | 4_3:-1647187 | Msa0623910:intron |
| TTCATGGAAAGAGTTTATAT+GGG | 0.483092 | 4_3:-1650546 | Msa0623910:CDS |
| AATATGGGAGGGCTAATGAA+TGG | 0.486275 | 4_3:-1646300 | Msa0623910:CDS |
| CTTCAAGATGATGAAGAACT+TGG | 0.491348 | 4_3:-1650459 | Msa0623910:CDS |
| ATTTGTGACAAATAATTTGG+TGG | 0.493699 | 4_3:-1645146 | Msa0623910:three_prime_UTR |
| TCTTTGACAACATTATTTGT+GGG | 0.499035 | 4_3:-1645062 | Msa0623910:three_prime_UTR |
| ATATGGGAGGGCTAATGAAT+GGG | 0.499596 | 4_3:-1646299 | Msa0623910:CDS |
| AGCAGCAATTCGCCAAATAC+CGG | 0.503544 | 4_3:+1647296 | None:intergenic |
| CTCCTCTACAAAGTACAAGA+AGG | 0.508959 | 4_3:-1645454 | Msa0623910:three_prime_UTR |
| AAGACATGACATTCTCGAAA+AGG | 0.512512 | 4_3:+1646359 | None:intergenic |
| TTAGACTGTGTTAGATAGTG+TGG | 0.518307 | 4_3:-1645247 | Msa0623910:three_prime_UTR |
| AAGAAGATAGAAGTAATCAA+TGG | 0.520681 | 4_3:-1645334 | Msa0623910:three_prime_UTR |
| TGTTTACATTTCATTAGCAA+TGG | 0.522412 | 4_3:-1650580 | Msa0623910:CDS |
| AGGCTTAATTTCTTGGAGCT+AGG | 0.522894 | 4_3:-1645671 | Msa0623910:CDS |
| TCCCTTCTTGTACTTTGTAG+AGG | 0.524601 | 4_3:+1645452 | None:intergenic |
| TGCCAAAGATGGGCAAGTAA+AGG | 0.533260 | 4_3:-1649607 | Msa0623910:CDS |
| TCTACAGTTAATTTAGGGGA+AGG | 0.534022 | 4_3:-1645392 | Msa0623910:three_prime_UTR |
| CAAGATGATGAAGAACTTGG+TGG | 0.538757 | 4_3:-1650456 | Msa0623910:CDS |
| TTGTGGGCTTTCATGGCCGA+CGG | 0.540449 | 4_3:-1650225 | Msa0623910:CDS |
| CAAATTGGAACATGAACCTC+AGG | 0.544374 | 4_3:+1646580 | None:intergenic |
| GAGCTACGATCTTGCGAACA+AGG | 0.545461 | 4_3:+1646655 | None:intergenic |
| AACCTGAATGCAGGGACGGC+CGG | 0.545969 | 4_3:-1647315 | Msa0623910:intron |
| AAAGCAGGTGCATTGAAAGA+AGG | 0.546072 | 4_3:-1649541 | Msa0623910:CDS |
| TGGAAATGGAATGCCAAAGA+TGG | 0.548465 | 4_3:-1649618 | Msa0623910:CDS |
| CAAACCAATTAGGGTCGCCT+TGG | 0.549066 | 4_3:+1646327 | None:intergenic |
| AAGTCAAATTAAGATGATAT+GGG | 0.549081 | 4_3:-1650646 | Msa0623910:CDS |
| TTCGAGCAAGTCTTAGGGGA+TGG | 0.551876 | 4_3:-1647215 | Msa0623910:CDS |
| CTATCAATGAAGCAGGAGGA+TGG | 0.553186 | 4_3:-1647275 | Msa0623910:CDS |
| ATTGCTGCTATCAATGAAGC+AGG | 0.553711 | 4_3:-1647282 | Msa0623910:CDS |
| TGAGTTGAGAATGGTGATGA+TGG | 0.557907 | 4_3:+1646537 | None:intergenic |
| AGTTCTTCATCATCTTGAAG+AGG | 0.559787 | 4_3:+1650462 | None:intergenic |
| CAAGATCCAAATTTATGGAA+AGG | 0.560045 | 4_3:-1646174 | Msa0623910:intron |
| GATTTACCTGGAGGTCTCCA+AGG | 0.562965 | 4_3:+1647181 | None:intergenic |
| CTCAGGAACCAAAATTGTGA+GGG | 0.566831 | 4_3:+1646597 | None:intergenic |
| TACTTTGTAGAGGAGAAACT+AGG | 0.570931 | 4_3:+1645462 | None:intergenic |
| ATTACCAACAAGAAAAGGAA+TGG | 0.571120 | 4_3:+1649432 | None:intergenic |
| TCCTCTACAAAGTACAAGAA+GGG | 0.574023 | 4_3:-1645453 | Msa0623910:three_prime_UTR |
| TAGTTCACTTGAAATGACTC+TGG | 0.578254 | 4_3:+1650678 | None:intergenic |
| GGATAAATTATGCACTCTTG+AGG | 0.579655 | 4_3:-1645125 | Msa0623910:three_prime_UTR |
| TCCAATGTTCAATGAAAGAG+AGG | 0.585758 | 4_3:-1650403 | Msa0623910:intron |
| TCAGATTCCAGCAGCACAGA+TGG | 0.587972 | 4_3:-1646888 | Msa0623910:CDS |
| CGATGTTTGACTATATCGAC+TGG | 0.589596 | 4_3:+1647068 | None:intergenic |
| ACCAAATCCTACAATTGAGA+AGG | 0.592924 | 4_3:+1645559 | None:intergenic |
| TTGGTTTGCTAGAATATGGG+AGG | 0.593945 | 4_3:-1646312 | Msa0623910:CDS |
| CTTCTAAGAAAATCAGGAGG+AGG | 0.594412 | 4_3:+1649457 | None:intergenic |
| ACAAGAGGTGGATACAAAGC+AGG | 0.594663 | 4_3:-1649556 | Msa0623910:CDS |
| AAGGTATAATCCAAATTCAA+CGG | 0.596113 | 4_3:+1647044 | None:intergenic |
| TTGAGAATGGTGATGATGGA+AGG | 0.598628 | 4_3:+1646541 | None:intergenic |
| GAGGTTCATGTTCCAATTTG+GGG | 0.599098 | 4_3:-1646577 | Msa0623910:CDS |
| TGGATTATACCTTAATTCAG+CGG | 0.604905 | 4_3:-1647034 | Msa0623910:intron |
| GCTGTTCGAGCAAGTCTTAG+GGG | 0.606955 | 4_3:-1647219 | Msa0623910:CDS |
| TGTTCCGACTGAGTTGAGAA+TGG | 0.616682 | 4_3:+1646528 | None:intergenic |
| CAGCAGCACAGATGGTCTTG+TGG | 0.617433 | 4_3:-1646880 | Msa0623910:CDS |
| ATCACCATTCTCAACTCAGT+CGG | 0.619321 | 4_3:-1646532 | Msa0623910:CDS |
| TGGTTTGCTAGAATATGGGA+GGG | 0.620333 | 4_3:-1646311 | Msa0623910:CDS |
| GGAAATGGAATGCCAAAGAT+GGG | 0.629673 | 4_3:-1649617 | Msa0623910:CDS |
| TCGCAAGATCGTAGCTCACA+TGG | 0.630015 | 4_3:-1646649 | Msa0623910:CDS |
| CAAATTAGAGAAACAAGAGG+TGG | 0.630612 | 4_3:-1649568 | Msa0623910:CDS |
| TGAATGAATGCAGCAAATGG+TGG | 0.632720 | 4_3:-1649638 | Msa0623910:intron |
| CAAATCTACAGTTAATTTAG+GGG | 0.635764 | 4_3:-1645396 | Msa0623910:three_prime_UTR |
| CCTCAGGAACCAAAATTGTG+AGG | 0.640518 | 4_3:+1646596 | None:intergenic |
| GGATGCTATGACTATGTGCA+TGG | 0.646576 | 4_3:-1645623 | Msa0623910:CDS |
| TTATAAGGTTTCGATTGGAG+CGG | 0.647679 | 4_3:-1650249 | Msa0623910:CDS |
| AAGTAATCAATGGAGAACAA+AGG | 0.659534 | 4_3:-1645324 | Msa0623910:three_prime_UTR |
| TACCAAATTAGAGAAACAAG+AGG | 0.669909 | 4_3:-1649571 | Msa0623910:CDS |
| TTTGGAATACCTTAACAACA+GGG | 0.672446 | 4_3:+1650165 | None:intergenic |
| TCAGGAACCAAAATTGTGAG+GGG | 0.679056 | 4_3:+1646598 | None:intergenic |
| CAGGAACCAAAATTGTGAGG+GGG | 0.680810 | 4_3:+1646599 | None:intergenic |
| GCTGCTATCAATGAAGCAGG+AGG | 0.681209 | 4_3:-1647279 | Msa0623910:CDS |
| GATGGAGATTATAAGGAACA+AGG | 0.689212 | 4_3:-1646830 | Msa0623910:intron |
| TGGATCACGAGTCGATCCGT+CGG | 0.693005 | 4_3:+1650209 | None:intergenic |
| CATGTCTTTACATCGTACCA+AGG | 0.699931 | 4_3:-1646344 | Msa0623910:CDS |
| GCTCTTCTAAGAAAATCAGG+AGG | 0.701297 | 4_3:+1649454 | None:intergenic |
| TCAACTCAGTCGGAACACCA+AGG | 0.719213 | 4_3:-1646522 | Msa0623910:intron |
| TATGAATGTGAAACAAACAG+AGG | 0.730213 | 4_3:+1650820 | None:intergenic |
| TAAGACTTGCTCGAACAGCG+AGG | 0.744360 | 4_3:+1647223 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAACTTTTTTTTTTTTTTA+CGG | - | chr4_3:1645474-1645493 | Msa0623910:three_prime_UTR | 10.0% |
| !! | AATTAAAAAATGAAAAAACA+TGG | + | chr4_3:1645859-1645878 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAAACTTTGTT+GGG | + | chr4_3:1645950-1645969 | None:intergenic | 10.0% |
| !!! | AAATCTAAATTATCAATTTT+GGG | + | chr4_3:1646042-1646061 | None:intergenic | 10.0% |
| !!! | AAAATCTAAATTATCAATTT+TGG | + | chr4_3:1646043-1646062 | None:intergenic | 10.0% |
| !!! | AGATTTTTTTTAATTAAAAG+GGG | - | chr4_3:1646056-1646075 | Msa0623910:intron | 10.0% |
| !! | GTTAATATAAAATTAAAAAG+TGG | - | chr4_3:1647010-1647029 | Msa0623910:intron | 10.0% |
| !! | TTCTATAATAATTCTAATTT+GGG | + | chr4_3:1649951-1649970 | None:intergenic | 10.0% |
| !! | ATTCTATAATAATTCTAATT+TGG | + | chr4_3:1649952-1649971 | None:intergenic | 10.0% |
| !!! | TTAACAAGTTTTGATTTTTA+GGG | - | chr4_3:1645012-1645031 | Msa0623910:three_prime_UTR | 15.0% |
| !!! | AAAAATTTGACATGAATTTT+TGG | + | chr4_3:1645658-1645677 | None:intergenic | 15.0% |
| !! | GAAAAAAAAAAAAACTTTGT+TGG | + | chr4_3:1645951-1645970 | None:intergenic | 15.0% |
| !!! | GATTTTTTTTAATTAAAAGG+GGG | - | chr4_3:1646057-1646076 | Msa0623910:intron | 15.0% |
| !!! | ATTTTTTTTAATTAAAAGGG+GGG | - | chr4_3:1646058-1646077 | Msa0623910:intron | 15.0% |
| !!! | GTTTAATTTTGATATAATGT+CGG | - | chr4_3:1646471-1646490 | Msa0623910:intron | 15.0% |
| !! | AATTTAGCAAAAATATTATG+TGG | - | chr4_3:1647162-1647181 | Msa0623910:intron | 15.0% |
| !! | ATTTAGCAAAAATATTATGT+GGG | - | chr4_3:1647163-1647182 | Msa0623910:intron | 15.0% |
| !!! | GTTAAATTAAGAAATAGTTT+TGG | + | chr4_3:1647701-1647720 | None:intergenic | 15.0% |
| !!! | ACTTTTTTACTTTTATGTTT+TGG | + | chr4_3:1648064-1648083 | None:intergenic | 15.0% |
| !! | TTACTAAAAAAATTACACTA+AGG | + | chr4_3:1648092-1648111 | None:intergenic | 15.0% |
| !!! | ATTTTAATGATGTTTTGTTT+TGG | - | chr4_3:1649067-1649086 | Msa0623910:intron | 15.0% |
| !!! | AAAATAATTGTATCTTCTTT+TGG | - | chr4_3:1649679-1649698 | Msa0623910:intron | 15.0% |
| !! | AATGAACTCATAATATTATA+AGG | - | chr4_3:1649969-1649988 | Msa0623910:intron | 15.0% |
| !!! | ATTTTGAAGTATCATATATA+TGG | - | chr4_3:1650079-1650098 | Msa0623910:intron | 15.0% |
| !!! | TTTACAGTTATATATTTTGT+TGG | - | chr4_3:1650609-1650628 | Msa0623910:CDS | 15.0% |
| !! | TATGGAAAACTAATAAATAA+AGG | + | chr4_3:1650636-1650655 | None:intergenic | 15.0% |
| !! | AAATTATTTGTCACAAATTA+TGG | + | chr4_3:1650654-1650673 | None:intergenic | 15.0% |
| !!! | ATAATTTGTGACAAATAATT+TGG | - | chr4_3:1650653-1650672 | Msa0623910:CDS | 15.0% |
| !! | AACTATAAAAACTAATTCAT+TGG | + | chr4_3:1650813-1650832 | None:intergenic | 15.0% |
| !!! | CTTAACAAGTTTTGATTTTT+AGG | - | chr4_3:1645011-1645030 | Msa0623910:three_prime_UTR | 20.0% |
| !!! | TAACAAGTTTTGATTTTTAG+GGG | - | chr4_3:1645013-1645032 | Msa0623910:three_prime_UTR | 20.0% |
| !! | TGTAAAGAGAAAGAAATTAA+AGG | - | chr4_3:1645037-1645056 | Msa0623910:three_prime_UTR | 20.0% |
| !! | GTAAAGAGAAAGAAATTAAA+GGG | - | chr4_3:1645038-1645057 | Msa0623910:three_prime_UTR | 20.0% |
| !! | AAGTCAAATTAAGATGATAT+GGG | - | chr4_3:1645156-1645175 | Msa0623910:three_prime_UTR | 20.0% |
| !! | TTCAAAAATGGTACAATTAA+TGG | + | chr4_3:1645196-1645215 | None:intergenic | 20.0% |
| !!! | TAATGTTGTTTTTCTATTAC+AGG | - | chr4_3:1645529-1645548 | Msa0623910:exon | 20.0% |
| !!! | TTTTCTATTACAGGTTTATA+AGG | - | chr4_3:1645538-1645557 | Msa0623910:CDS | 20.0% |
| !! | TCTTAAAATGACATCAAATT+TGG | + | chr4_3:1645836-1645855 | None:intergenic | 20.0% |
| !!! | TAAATTATCAATTTTGGGAT+TGG | + | chr4_3:1646037-1646056 | None:intergenic | 20.0% |
| !!! | GTTTTTTATATTGATTGTGT+AGG | - | chr4_3:1646847-1646866 | Msa0623910:CDS | 20.0% |
| !! | ATAATGTTACAAAAAAAACC+TGG | - | chr4_3:1647111-1647130 | Msa0623910:intron | 20.0% |
| !! | TAATGTTACAAAAAAAACCT+GGG | - | chr4_3:1647112-1647131 | Msa0623910:intron | 20.0% |
| !! | TTTAGCAAAAATATTATGTG+GGG | - | chr4_3:1647164-1647183 | Msa0623910:intron | 20.0% |
| !! | TTCAATAAGTTAACATGTTT+AGG | - | chr4_3:1647423-1647442 | Msa0623910:intron | 20.0% |
| !! | TAGTAGAAAACTTTGATATT+TGG | + | chr4_3:1647492-1647511 | None:intergenic | 20.0% |
| !! | TCATTCATAATAATCATACT+TGG | - | chr4_3:1647722-1647741 | Msa0623910:intron | 20.0% |
| !! | TTAATAATACTAAGTAGTAG+TGG | - | chr4_3:1647772-1647791 | Msa0623910:intron | 20.0% |
| !!! | TGGTGTAGTTTATTTTATTT+AGG | - | chr4_3:1647792-1647811 | Msa0623910:intron | 20.0% |
| !! | ATAAAAATCATGTGTTTATG+TGG | - | chr4_3:1647894-1647913 | Msa0623910:intron | 20.0% |
| !! | TAAAAATCATGTGTTTATGT+GGG | - | chr4_3:1647895-1647914 | Msa0623910:intron | 20.0% |
| !!! | TTAACTTTAACTTTTTCACA+AGG | + | chr4_3:1648037-1648056 | None:intergenic | 20.0% |
| !! | TGTTATACTAATATTGAGAA+TGG | - | chr4_3:1648129-1648148 | Msa0623910:intron | 20.0% |
| !! | TTCAAATTAATAAAGTGCAA+GGG | + | chr4_3:1648394-1648413 | None:intergenic | 20.0% |
| !!! | CTTACTAATGTTTCATATTT+TGG | - | chr4_3:1648464-1648483 | Msa0623910:intron | 20.0% |
| !!! | GAAATTATGATCAAGTTTTT+TGG | + | chr4_3:1649034-1649053 | None:intergenic | 20.0% |
| !!! | TTTATTGTTGTTGTTGTTAA+CGG | + | chr4_3:1649553-1649572 | None:intergenic | 20.0% |
| !! | AACAATAAAAAAGACAAATC+TGG | - | chr4_3:1649564-1649583 | Msa0623910:CDS | 20.0% |
| !!! | ATATTCTAAAATCTTCTGTA+AGG | + | chr4_3:1649894-1649913 | None:intergenic | 20.0% |
| !!! | AACAAGTTTTGATTTTTAGG+GGG | - | chr4_3:1645014-1645033 | Msa0623910:three_prime_UTR | 25.0% |
| ! | CAAGTCAAATTAAGATGATA+TGG | - | chr4_3:1645155-1645174 | Msa0623910:three_prime_UTR | 25.0% |
| ! | TAAACACAAGCATTCAAAAA+TGG | + | chr4_3:1645208-1645227 | None:intergenic | 25.0% |
| ! | TGTTTACATTTCATTAGCAA+TGG | - | chr4_3:1645222-1645241 | Msa0623910:three_prime_UTR | 25.0% |
| ! | TTTCATGGAAAGAGTTTATA+TGG | - | chr4_3:1645255-1645274 | Msa0623910:three_prime_UTR | 25.0% |
| ! | TTCATGGAAAGAGTTTATAT+GGG | - | chr4_3:1645256-1645275 | Msa0623910:three_prime_UTR | 25.0% |
| !!! | TATGGGTTTTGTTATCATTT+TGG | - | chr4_3:1645273-1645292 | Msa0623910:three_prime_UTR | 25.0% |
| ! | TCATATTTATAACGTTGTTC+AGG | + | chr4_3:1645319-1645338 | None:intergenic | 25.0% |
| !!! | GTTCTTTGTTTTTGTTCTTT+TGG | - | chr4_3:1645442-1645461 | Msa0623910:three_prime_UTR | 25.0% |
| !! | TTTGTTCTTTTGGATTCTTT+TGG | - | chr4_3:1645452-1645471 | Msa0623910:three_prime_UTR | 25.0% |
| !! | AAGCTTTTACAAAATTACTG+TGG | - | chr4_3:1645797-1645816 | Msa0623910:intron | 25.0% |
| !! | AATTTCTAGATTCATAGTGT+CGG | - | chr4_3:1646764-1646783 | Msa0623910:intron | 25.0% |
| ! | TATTATGTATAGATCCAATG+TGG | - | chr4_3:1647259-1647278 | Msa0623910:CDS | 25.0% |
| ! | ATTATGTATAGATCCAATGT+GGG | - | chr4_3:1647260-1647279 | Msa0623910:CDS | 25.0% |
| ! | TTAGGAAAGAAAATGAAACA+AGG | - | chr4_3:1647441-1647460 | Msa0623910:intron | 25.0% |
| ! | TAGGAAAGAAAATGAAACAA+GGG | - | chr4_3:1647442-1647461 | Msa0623910:intron | 25.0% |
| ! | AAATGAAACAAGGGTAAAAA+TGG | - | chr4_3:1647451-1647470 | Msa0623910:intron | 25.0% |
| ! | AATGAAACAAGGGTAAAAAT+GGG | - | chr4_3:1647452-1647471 | Msa0623910:intron | 25.0% |
| ! | AATAATAATATGTGTCAGTG+TGG | - | chr4_3:1647578-1647597 | Msa0623910:CDS | 25.0% |
| ! | ATAATAATATGTGTCAGTGT+GGG | - | chr4_3:1647579-1647598 | Msa0623910:CDS | 25.0% |
| ! | TGACATAAGAAATGAAAAGA+GGG | + | chr4_3:1647670-1647689 | None:intergenic | 25.0% |
| ! | CATAATAATCATACTTGGTT+AGG | - | chr4_3:1647727-1647746 | Msa0623910:intron | 25.0% |
| ! | CAAAAAGAAAAAGTCATCTT+TGG | + | chr4_3:1647922-1647941 | None:intergenic | 25.0% |
| !! | CTTTTTCTTTTTGTACCTTT+TGG | - | chr4_3:1647929-1647948 | Msa0623910:intron | 25.0% |
| ! | ATTTGACGATGAAAAACATA+AGG | + | chr4_3:1648293-1648312 | None:intergenic | 25.0% |
| ! | CTTCAAATTAATAAAGTGCA+AGG | + | chr4_3:1648395-1648414 | None:intergenic | 25.0% |
| ! | TATTGAATAGAAGATTTACC+TGG | + | chr4_3:1648636-1648655 | None:intergenic | 25.0% |
| ! | ATAGATTGTGAATCATATGA+TGG | - | chr4_3:1648678-1648697 | Msa0623910:intron | 25.0% |
| ! | AAGGTATAATCCAAATTCAA+CGG | + | chr4_3:1648761-1648780 | None:intergenic | 25.0% |
| !! | CATTGCAACTTTCTTTTTAT+AGG | - | chr4_3:1648858-1648877 | Msa0623910:intron | 25.0% |
| ! | ATATTCTAGCAAACCAATTA+GGG | + | chr4_3:1649487-1649506 | None:intergenic | 25.0% |
| !!! | TAATTGGTTTGCTAGAATAT+GGG | - | chr4_3:1649487-1649506 | Msa0623910:CDS | 25.0% |
| !! | TTTCTTTTGAACTTTGACAT+TGG | + | chr4_3:1649607-1649626 | None:intergenic | 25.0% |
| ! | GAAAACAAGATCCAAATTTA+TGG | - | chr4_3:1649623-1649642 | Msa0623910:CDS | 25.0% |
| !! | CAAATTCTACATCTTCATTT+TGG | - | chr4_3:1649719-1649738 | Msa0623910:intron | 25.0% |
| ! | ATTAAAGGAATCTTGTAGTT+TGG | - | chr4_3:1649770-1649789 | Msa0623910:intron | 25.0% |
| ! | TCCTTCAATCATGAAATTAT+TGG | + | chr4_3:1649796-1649815 | None:intergenic | 25.0% |
| !!! | GTTATTTTGTTGTTTCTAGT+AGG | - | chr4_3:1649841-1649860 | Msa0623910:intron | 25.0% |
| !! | TTACGAAACTTTAACGATTT+TGG | + | chr4_3:1650302-1650321 | None:intergenic | 25.0% |
| ! | ACCAAATCTACAGTTAATTT+AGG | - | chr4_3:1650404-1650423 | Msa0623910:CDS | 25.0% |
| ! | CCAAATCTACAGTTAATTTA+GGG | - | chr4_3:1650405-1650424 | Msa0623910:CDS | 25.0% |
| ! | CAAATCTACAGTTAATTTAG+GGG | - | chr4_3:1650406-1650425 | Msa0623910:CDS | 25.0% |
| !! | ATTGATGACAATGAAAATCT+TGG | + | chr4_3:1650447-1650466 | None:intergenic | 25.0% |
| ! | AAGAAGATAGAAGTAATCAA+TGG | - | chr4_3:1650468-1650487 | Msa0623910:CDS | 25.0% |
| !!! | TTTTGTTTGCATAGATTGTT+TGG | - | chr4_3:1650579-1650598 | Msa0623910:CDS | 25.0% |
| ! | ATTTGTGACAAATAATTTGG+TGG | - | chr4_3:1650656-1650675 | Msa0623910:CDS | 25.0% |
| ! | TTCTTTGACAACATTATTTG+TGG | - | chr4_3:1650739-1650758 | Msa0623910:five_prime_UTR | 25.0% |
| ! | TCTTTGACAACATTATTTGT+GGG | - | chr4_3:1650740-1650759 | Msa0623910:five_prime_UTR | 25.0% |
| TATGAATGTGAAACAAACAG+AGG | + | chr4_3:1644985-1645004 | None:intergenic | 30.0% | |
| TCTGTTTGTTTCACATTCAT+AGG | - | chr4_3:1644984-1645003 | Msa0623910:three_prime_UTR | 30.0% | |
| GACTCTGGTATATAAACTTT+AGG | + | chr4_3:1645112-1645131 | None:intergenic | 30.0% | |
| !!! | TCATTTTGGTTAAGCTCTTT+TGG | - | chr4_3:1645287-1645306 | Msa0623910:three_prime_UTR | 30.0% |
| ! | TTTGGAATACCTTAACAACA+GGG | + | chr4_3:1645640-1645659 | None:intergenic | 30.0% |
| !!! | TTTTGGAATACCTTAACAAC+AGG | + | chr4_3:1645641-1645660 | None:intergenic | 30.0% |
| AATTCTTCAATCACCCAATA+AGG | - | chr4_3:1645685-1645704 | Msa0623910:intron | 30.0% | |
| AGAAAATGCAGATCCTTATT+GGG | + | chr4_3:1645701-1645720 | None:intergenic | 30.0% | |
| AAGAAAATGCAGATCCTTAT+TGG | + | chr4_3:1645702-1645721 | None:intergenic | 30.0% | |
| TTTACAAAATTACTGTGGCT+CGG | - | chr4_3:1645802-1645821 | Msa0623910:intron | 30.0% | |
| TACCAAATTAGAGAAACAAG+AGG | - | chr4_3:1646231-1646250 | Msa0623910:CDS | 30.0% | |
| ATTACCAACAAGAAAAGGAA+TGG | + | chr4_3:1646373-1646392 | None:intergenic | 30.0% | |
| AAGTCAAACAAGGACAAAAT+TGG | + | chr4_3:1646894-1646913 | None:intergenic | 30.0% | |
| !! | AATTTTGTCCTTGTTTGACT+TGG | - | chr4_3:1646893-1646912 | Msa0623910:CDS | 30.0% |
| !! | ATTTTGTCCTTGTTTGACTT+GGG | - | chr4_3:1646894-1646913 | Msa0623910:CDS | 30.0% |
| !! | AATTCTAAAGTATGAGTCGT+TGG | + | chr4_3:1646981-1647000 | None:intergenic | 30.0% |
| TCGTTAATAGGTATTTGTCA+AGG | - | chr4_3:1647187-1647206 | Msa0623910:intron | 30.0% | |
| CGTTAATAGGTATTTGTCAA+GGG | - | chr4_3:1647188-1647207 | Msa0623910:CDS | 30.0% | |
| ! | TTTTCTACTAGTTCCATCAA+AGG | - | chr4_3:1647502-1647521 | Msa0623910:intron | 30.0% |
| !! | GTGGTTTTGCAGTATATTTA+GGG | - | chr4_3:1647535-1647554 | Msa0623910:intron | 30.0% |
| AAATGAAAAGAGGGAATAGT+TGG | + | chr4_3:1647661-1647680 | None:intergenic | 30.0% | |
| GTGACATAAGAAATGAAAAG+AGG | + | chr4_3:1647671-1647690 | None:intergenic | 30.0% | |
| ! | TTCTTTTTGTACCTTTTGGT+TGG | - | chr4_3:1647933-1647952 | Msa0623910:intron | 30.0% |
| TTTACCTTACCTAATGATGT+TGG | - | chr4_3:1647997-1648016 | Msa0623910:intron | 30.0% | |
| TGGATTATACCTTAATTCAG+CGG | - | chr4_3:1648768-1648787 | Msa0623910:intron | 30.0% | |
| TATCATATCCATCTTTAGTG+CGG | - | chr4_3:1649325-1649344 | Msa0623910:intron | 30.0% | |
| CAATGAGTTTGACATAATCA+CGG | + | chr4_3:1649371-1649390 | None:intergenic | 30.0% | |
| ! | CAATTCACCTTTTGTTCTAT+TGG | - | chr4_3:1649418-1649437 | Msa0623910:CDS | 30.0% |
| AAAGGATCCAATAGAACAAA+AGG | + | chr4_3:1649428-1649447 | None:intergenic | 30.0% | |
| CATATTCTAGCAAACCAATT+AGG | + | chr4_3:1649488-1649507 | None:intergenic | 30.0% | |
| !! | CTAATTGGTTTGCTAGAATA+TGG | - | chr4_3:1649486-1649505 | Msa0623910:CDS | 30.0% |
| !!! | AACTTTGACATTGGTTTTCT+TGG | + | chr4_3:1649598-1649617 | None:intergenic | 30.0% |
| CAAGATCCAAATTTATGGAA+AGG | - | chr4_3:1649628-1649647 | Msa0623910:CDS | 30.0% | |
| AACTGACCTTTCCATAAATT+TGG | + | chr4_3:1649637-1649656 | None:intergenic | 30.0% | |
| GCCAATAATTTCATGATTGA+AGG | - | chr4_3:1649792-1649811 | Msa0623910:intron | 30.0% | |
| ! | TGATTTGAGTTCCAAACAAA+GGG | - | chr4_3:1650013-1650032 | Msa0623910:intron | 30.0% |
| GTGAACTATAGTACAAAACT+AGG | + | chr4_3:1650048-1650067 | None:intergenic | 30.0% | |
| ! | ATTGTAGGATTTGGTTATGT+TGG | - | chr4_3:1650251-1650270 | Msa0623910:CDS | 30.0% |
| ! | CTCAAAGAGATTTTACACTA+TGG | + | chr4_3:1650279-1650298 | None:intergenic | 30.0% |
| CCCTAAATTAACTGTAGATT+TGG | + | chr4_3:1650408-1650427 | None:intergenic | 30.0% | |
| AAGTAATCAATGGAGAACAA+AGG | - | chr4_3:1650478-1650497 | Msa0623910:CDS | 30.0% | |
| TTGTGGGAAAAAAAATCTTG+AGG | - | chr4_3:1650756-1650775 | Msa0623910:five_prime_UTR | 30.0% | |
| AGAGAGAGATCTCATCAAAA+TGG | - | chr4_3:1645075-1645094 | Msa0623910:three_prime_UTR | 35.0% | |
| TAGTTCACTTGAAATGACTC+TGG | + | chr4_3:1645127-1645146 | None:intergenic | 35.0% | |
| ! | AATGGCACTTATGCTTTTCA+TGG | - | chr4_3:1645240-1645259 | Msa0623910:three_prime_UTR | 35.0% |
| AGTTCTTCATCATCTTGAAG+AGG | + | chr4_3:1645343-1645362 | None:intergenic | 35.0% | |
| CTTCAAGATGATGAAGAACT+TGG | - | chr4_3:1645343-1645362 | Msa0623910:three_prime_UTR | 35.0% | |
| GGAATTTGAACAAGAACAAC+AGG | + | chr4_3:1645382-1645401 | None:intergenic | 35.0% | |
| TCCAATGTTCAATGAAAGAG+AGG | - | chr4_3:1645399-1645418 | Msa0623910:three_prime_UTR | 35.0% | |
| ACCTCTCTTTCATTGAACAT+TGG | + | chr4_3:1645403-1645422 | None:intergenic | 35.0% | |
| CAGGTTTATAAGGTTTCGAT+TGG | - | chr4_3:1645548-1645567 | Msa0623910:CDS | 35.0% | |
| TTATAAGGTTTCGATTGGAG+CGG | - | chr4_3:1645553-1645572 | Msa0623910:CDS | 35.0% | |
| CAGTAGAATCATCAAGTACT+TGG | + | chr4_3:1645616-1645635 | None:intergenic | 35.0% | |
| GAATGAATGAATGCAGCAAA+TGG | - | chr4_3:1646161-1646180 | Msa0623910:intron | 35.0% | |
| ! | CACCTCTTGTTTCTCTAATT+TGG | + | chr4_3:1646236-1646255 | None:intergenic | 35.0% |
| CAAATTAGAGAAACAAGAGG+TGG | - | chr4_3:1646234-1646253 | Msa0623910:CDS | 35.0% | |
| ! | ATGGCTCTTCTAAGAAAATC+AGG | + | chr4_3:1646354-1646373 | None:intergenic | 35.0% |
| TCAGGATTACCAACAAGAAA+AGG | + | chr4_3:1646378-1646397 | None:intergenic | 35.0% | |
| GAAAACAAACCCTTCAATCA+CGG | - | chr4_3:1646945-1646964 | Msa0623910:intron | 35.0% | |
| AAAACAAACCCTTCAATCAC+GGG | - | chr4_3:1646946-1646965 | Msa0623910:intron | 35.0% | |
| TGTTACAAAAAAAACCTGGG+CGG | - | chr4_3:1647115-1647134 | Msa0623910:intron | 35.0% | |
| TATTATGTGGGGTCGTTAAT+AGG | - | chr4_3:1647175-1647194 | Msa0623910:intron | 35.0% | |
| !!! | ATTTTTGAGTTGACCCACAT+TGG | + | chr4_3:1647276-1647295 | None:intergenic | 35.0% |
| ATGTGGGTCAACTCAAAAAT+AGG | - | chr4_3:1647276-1647295 | Msa0623910:CDS | 35.0% | |
| GGTCAACTCAAAAATAGGAA+CGG | - | chr4_3:1647281-1647300 | Msa0623910:CDS | 35.0% | |
| GTCAACTCAAAAATAGGAAC+GGG | - | chr4_3:1647282-1647301 | Msa0623910:CDS | 35.0% | |
| AATATACTGCAAAACCACGT+GGG | + | chr4_3:1647533-1647552 | None:intergenic | 35.0% | |
| AAATATACTGCAAAACCACG+TGG | + | chr4_3:1647534-1647553 | None:intergenic | 35.0% | |
| !! | CGTGGTTTTGCAGTATATTT+AGG | - | chr4_3:1647534-1647553 | Msa0623910:intron | 35.0% |
| AATGCATAATTCCGTTACAG+TGG | + | chr4_3:1647959-1647978 | None:intergenic | 35.0% | |
| AAGGTAAAGTACACTATCAC+AGG | + | chr4_3:1647985-1648004 | None:intergenic | 35.0% | |
| ATGACCAACATCATTAGGTA+AGG | + | chr4_3:1648004-1648023 | None:intergenic | 35.0% | |
| ! | TCTTGATGACCAACATCATT+AGG | + | chr4_3:1648009-1648028 | None:intergenic | 35.0% |
| AAGAATGCAAGAGATGTCTT+TGG | - | chr4_3:1648189-1648208 | Msa0623910:intron | 35.0% | |
| TCGTTAGTCAAGATATTGTG+TGG | - | chr4_3:1648325-1648344 | Msa0623910:intron | 35.0% | |
| TGATGTAATCACATGTGTCT+AGG | + | chr4_3:1648440-1648459 | None:intergenic | 35.0% | |
| !!! | ATATTTTGGAACCTGAATGC+AGG | - | chr4_3:1648478-1648497 | Msa0623910:intron | 35.0% |
| !!! | TATTTTGGAACCTGAATGCA+GGG | - | chr4_3:1648479-1648498 | Msa0623910:intron | 35.0% |
| CAGAACAACAGTTGAAGATA+TGG | - | chr4_3:1648555-1648574 | Msa0623910:intron | 35.0% | |
| ! | GGATGGAAATTTTTGTACCT+TGG | - | chr4_3:1648604-1648623 | Msa0623910:intron | 35.0% |
| TGAATAGAAGATTTACCTGG+AGG | + | chr4_3:1648633-1648652 | None:intergenic | 35.0% | |
| AAATCTCAACCGCTGAATTA+AGG | + | chr4_3:1648780-1648799 | None:intergenic | 35.0% | |
| ! | ATTTTGCGGAAAAGATTAGC+AGG | + | chr4_3:1648949-1648968 | None:intergenic | 35.0% |
| ! | TGCTAATCTTTTCCGCAAAA+TGG | - | chr4_3:1648948-1648967 | Msa0623910:intron | 35.0% |
| AAATGGCGATGGAGATTATA+AGG | - | chr4_3:1648965-1648984 | Msa0623910:intron | 35.0% | |
| GATGGAGATTATAAGGAACA+AGG | - | chr4_3:1648972-1648991 | Msa0623910:intron | 35.0% | |
| TGAGGTTCATGTTCCAATTT+GGG | - | chr4_3:1649224-1649243 | Msa0623910:intron | 35.0% | |
| ATAGAAAATTAAGCGCACCT+TGG | + | chr4_3:1649300-1649319 | None:intergenic | 35.0% | |
| AAGACATGACATTCTCGAAA+AGG | + | chr4_3:1649446-1649465 | None:intergenic | 35.0% | |
| ! | GTGATTTGAGTTCCAAACAA+AGG | - | chr4_3:1650012-1650031 | Msa0623910:intron | 35.0% |
| ! | GATTTGAGTTCCAAACAAAG+GGG | - | chr4_3:1650014-1650033 | Msa0623910:intron | 35.0% |
| !! | ATGTGTTTTTGAACATGAGC+AGG | - | chr4_3:1650111-1650130 | Msa0623910:intron | 35.0% |
| AGGTTAAGGTTTGAAGGAAA+AGG | + | chr4_3:1650226-1650245 | None:intergenic | 35.0% | |
| TTGAGAAGGTTAAGGTTTGA+AGG | + | chr4_3:1650232-1650251 | None:intergenic | 35.0% | |
| ACCTTAACCTTCTCAATTGT+AGG | - | chr4_3:1650236-1650255 | Msa0623910:CDS | 35.0% | |
| TCCTACAATTGAGAAGGTTA+AGG | + | chr4_3:1650240-1650259 | None:intergenic | 35.0% | |
| ACCTTCTCAATTGTAGGATT+TGG | - | chr4_3:1650242-1650261 | Msa0623910:CDS | 35.0% | |
| ACCAAATCCTACAATTGAGA+AGG | + | chr4_3:1650246-1650265 | None:intergenic | 35.0% | |
| TACTTTGTAGAGGAGAAACT+AGG | + | chr4_3:1650343-1650362 | None:intergenic | 35.0% | |
| TCCTCTACAAAGTACAAGAA+GGG | - | chr4_3:1650349-1650368 | Msa0623910:intron | 35.0% | |
| TCTACAGTTAATTTAGGGGA+AGG | - | chr4_3:1650410-1650429 | Msa0623910:CDS | 35.0% | |
| TTAGACTGTGTTAGATAGTG+TGG | - | chr4_3:1650555-1650574 | Msa0623910:CDS | 35.0% | |
| GGATAAATTATGCACTCTTG+AGG | - | chr4_3:1650677-1650696 | Msa0623910:CDS | 35.0% | |
| CAAGATGATGAAGAACTTGG+TGG | - | chr4_3:1645346-1645365 | Msa0623910:three_prime_UTR | 40.0% | |
| TTCTACTGACCCTGTTGTTA+AGG | - | chr4_3:1645628-1645647 | Msa0623910:CDS | 40.0% | |
| GTTGGGACTATCACTTTGAA+TGG | + | chr4_3:1645933-1645952 | None:intergenic | 40.0% | |
| !! | TAATTAAAAGGGGGGTGTTG+AGG | - | chr4_3:1646066-1646085 | Msa0623910:intron | 40.0% |
| TGAATGAATGCAGCAAATGG+TGG | - | chr4_3:1646164-1646183 | Msa0623910:intron | 40.0% | |
| ! | AATGCAGCAAATGGTGGAAA+TGG | - | chr4_3:1646170-1646189 | Msa0623910:intron | 40.0% |
| TGGAAATGGAATGCCAAAGA+TGG | - | chr4_3:1646184-1646203 | Msa0623910:CDS | 40.0% | |
| GGAAATGGAATGCCAAAGAT+GGG | - | chr4_3:1646185-1646204 | Msa0623910:CDS | 40.0% | |
| TTCCTTTACTTGCCCATCTT+TGG | + | chr4_3:1646200-1646219 | None:intergenic | 40.0% | |
| AAAGCAGGTGCATTGAAAGA+AGG | - | chr4_3:1646261-1646280 | Msa0623910:CDS | 40.0% | |
| ! | CTTCTAAGAAAATCAGGAGG+AGG | + | chr4_3:1646348-1646367 | None:intergenic | 40.0% |
| ! | GCTCTTCTAAGAAAATCAGG+AGG | + | chr4_3:1646351-1646370 | None:intergenic | 40.0% |
| ! | AGAGCCATTCCTTTTCTTGT+TGG | - | chr4_3:1646366-1646385 | Msa0623910:CDS | 40.0% |
| CCTTGAACAAGAGCAATTTC+AGG | + | chr4_3:1646396-1646415 | None:intergenic | 40.0% | |
| CCTGAAATTGCTCTTGTTCA+AGG | - | chr4_3:1646393-1646412 | Msa0623910:intron | 40.0% | |
| ! | TTCTAGATTCATAGTGTCGG+TGG | - | chr4_3:1646767-1646786 | Msa0623910:intron | 40.0% |
| !! | GATTGAAGGGTTTGTTTTCG+TGG | + | chr4_3:1646944-1646963 | None:intergenic | 40.0% |
| CTTCTTGCTCAACTGTGAAA+TGG | + | chr4_3:1648219-1648238 | None:intergenic | 40.0% | |
| TTCACAGTTGAGCAAGAAGT+TGG | - | chr4_3:1648220-1648239 | Msa0623910:intron | 40.0% | |
| TCAGCTACTCATGCTTTCTT+TGG | - | chr4_3:1648244-1648263 | Msa0623910:intron | 40.0% | |
| ! | CATGCTTTCTTTGGCTTCAA+TGG | - | chr4_3:1648253-1648272 | Msa0623910:intron | 40.0% |
| ATTGCTGCTATCAATGAAGC+AGG | - | chr4_3:1648520-1648539 | Msa0623910:intron | 40.0% | |
| GCTGCAAAAGATTATGAGCT+AGG | + | chr4_3:1648711-1648730 | None:intergenic | 40.0% | |
| CGATGTTTGACTATATCGAC+TGG | + | chr4_3:1648737-1648756 | None:intergenic | 40.0% | |
| CAAACATCGACCGTTGAATT+TGG | - | chr4_3:1648748-1648767 | Msa0623910:intron | 40.0% | |
| !! | TAATCTCCATCGCCATTTTG+CGG | + | chr4_3:1648963-1648982 | None:intergenic | 40.0% |
| ! | TGTAATCCCCCTCACAATTT+TGG | - | chr4_3:1649197-1649216 | Msa0623910:intron | 40.0% |
| TCAGGAACCAAAATTGTGAG+GGG | + | chr4_3:1649207-1649226 | None:intergenic | 40.0% | |
| CTCAGGAACCAAAATTGTGA+GGG | + | chr4_3:1649208-1649227 | None:intergenic | 40.0% | |
| CAAATTGGAACATGAACCTC+AGG | + | chr4_3:1649225-1649244 | None:intergenic | 40.0% | |
| CTGAGGTTCATGTTCCAATT+TGG | - | chr4_3:1649223-1649242 | Msa0623910:intron | 40.0% | |
| GAGGTTCATGTTCCAATTTG+GGG | - | chr4_3:1649225-1649244 | Msa0623910:intron | 40.0% | |
| ATGTAAACAGCTCCCCAAAT+TGG | + | chr4_3:1649240-1649259 | None:intergenic | 40.0% | |
| !! | TTGAGAATGGTGATGATGGA+AGG | + | chr4_3:1649264-1649283 | None:intergenic | 40.0% |
| ! | TGAGTTGAGAATGGTGATGA+TGG | + | chr4_3:1649268-1649287 | None:intergenic | 40.0% |
| ATCACCATTCTCAACTCAGT+CGG | - | chr4_3:1649270-1649289 | Msa0623910:intron | 40.0% | |
| TGAATTGACCGCACTAAAGA+TGG | + | chr4_3:1649336-1649355 | None:intergenic | 40.0% | |
| ! | TCATCGTGTGAAACTTTTGC+AGG | - | chr4_3:1649394-1649413 | Msa0623910:intron | 40.0% |
| CATGTCTTTACATCGTACCA+AGG | - | chr4_3:1649458-1649477 | Msa0623910:CDS | 40.0% | |
| !! | TTGGTTTGCTAGAATATGGG+AGG | - | chr4_3:1649490-1649509 | Msa0623910:CDS | 40.0% |
| !! | TGGTTTGCTAGAATATGGGA+GGG | - | chr4_3:1649491-1649510 | Msa0623910:CDS | 40.0% |
| AATATGGGAGGGCTAATGAA+TGG | - | chr4_3:1649502-1649521 | Msa0623910:CDS | 40.0% | |
| ATATGGGAGGGCTAATGAAT+GGG | - | chr4_3:1649503-1649522 | Msa0623910:CDS | 40.0% | |
| ! | AACGGAGTCTCCAAGTTTTT+CGG | + | chr4_3:1649535-1649554 | None:intergenic | 40.0% |
| GGACAAAATTCCCCTTTGTT+TGG | + | chr4_3:1650027-1650046 | None:intergenic | 40.0% | |
| CATGAGCAGGCTTAATTTCT+TGG | - | chr4_3:1650124-1650143 | Msa0623910:intron | 40.0% | |
| AGGCTTAATTTCTTGGAGCT+AGG | - | chr4_3:1650131-1650150 | Msa0623910:intron | 40.0% | |
| !! | GCAGTGTTTCTGTTCTTTTG+TGG | - | chr4_3:1650158-1650177 | Msa0623910:intron | 40.0% |
| CTCCTCTACAAAGTACAAGA+AGG | - | chr4_3:1650348-1650367 | Msa0623910:intron | 40.0% | |
| TCCCTTCTTGTACTTTGTAG+AGG | + | chr4_3:1650353-1650372 | None:intergenic | 40.0% | |
| TAGTTGTGCGCAAAGATATC+TGG | - | chr4_3:1650828-1650847 | Msa0623910:five_prime_UTR | 40.0% | |
| ! | AGAGAGAGAGAGTGTGAGAA+GGG | + | chr4_3:1644922-1644941 | None:intergenic | 45.0% |
| TGCCAAAGATGGGCAAGTAA+AGG | - | chr4_3:1646195-1646214 | Msa0623910:CDS | 45.0% | |
| ACAAGAGGTGGATACAAAGC+AGG | - | chr4_3:1646246-1646265 | Msa0623910:CDS | 45.0% | |
| TTGCTCTTGTTCAAGGTCGT+TGG | - | chr4_3:1646400-1646419 | Msa0623910:intron | 45.0% | |
| GTTCAAGGTCGTTGGAGATT+TGG | - | chr4_3:1646408-1646427 | Msa0623910:intron | 45.0% | |
| !! | TTGTTTGACTTGGGTTAGCC+CGG | - | chr4_3:1646903-1646922 | Msa0623910:CDS | 45.0% |
| AAACCCTTCAATCACGGGTA+GGG | - | chr4_3:1646951-1646970 | Msa0623910:intron | 45.0% | |
| ACTAAATATCATAGCCGCCC+AGG | + | chr4_3:1647132-1647151 | None:intergenic | 45.0% | |
| AAGGTCGACCATAAGACACA+TGG | + | chr4_3:1647618-1647637 | None:intergenic | 45.0% | |
| !! | TTGGAAGTGTCGGCAAGAAA+GGG | + | chr4_3:1647642-1647661 | None:intergenic | 45.0% |
| ! | GAGGGAATAGTTGGAAGTGT+CGG | + | chr4_3:1647652-1647671 | None:intergenic | 45.0% |
| !! | CTTTTGGTTGGCCACTGTAA+CGG | - | chr4_3:1647945-1647964 | Msa0623910:intron | 45.0% |
| TGGATTCGAGCCCACATATT+TGG | - | chr4_3:1648345-1648364 | Msa0623910:intron | 45.0% | |
| GACGATGCAGCCAAATATGT+GGG | + | chr4_3:1648358-1648377 | None:intergenic | 45.0% | |
| AGACGATGCAGCCAAATATG+TGG | + | chr4_3:1648359-1648378 | None:intergenic | 45.0% | |
| AGCAGCAATTCGCCAAATAC+CGG | + | chr4_3:1648509-1648528 | None:intergenic | 45.0% | |
| CTATCAATGAAGCAGGAGGA+TGG | - | chr4_3:1648527-1648546 | Msa0623910:intron | 45.0% | |
| ! | CTGAATGCTCTCAGAGTACT+TGG | + | chr4_3:1648898-1648917 | None:intergenic | 45.0% |
| ! | TCTTTTCCGCAAAATGGCGA+TGG | - | chr4_3:1648954-1648973 | Msa0623910:intron | 45.0% |
| GTGTGCAGAAAGTGAAGTTC+TGG | - | chr4_3:1649095-1649114 | Msa0623910:intron | 45.0% | |
| CAGGAACCAAAATTGTGAGG+GGG | + | chr4_3:1649206-1649225 | None:intergenic | 45.0% | |
| CCTCAGGAACCAAAATTGTG+AGG | + | chr4_3:1649209-1649228 | None:intergenic | 45.0% | |
| !!! | CCTCACAATTTTGGTTCCTG+AGG | - | chr4_3:1649206-1649225 | Msa0623910:intron | 45.0% |
| ! | TGTTCCGACTGAGTTGAGAA+TGG | + | chr4_3:1649277-1649296 | None:intergenic | 45.0% |
| TGGGTTGTGACCGAAAAACT+TGG | - | chr4_3:1649522-1649541 | Msa0623910:CDS | 45.0% | |
| CTCACACTAGCTGGCATTAA+AGG | - | chr4_3:1649755-1649774 | Msa0623910:intron | 45.0% | |
| TTCTGTAAGGCTCATGTGCA+TGG | + | chr4_3:1649881-1649900 | None:intergenic | 45.0% | |
| GGATGCTATGACTATGTGCA+TGG | - | chr4_3:1650179-1650198 | Msa0623910:CDS | 45.0% | |
| !!! | TTAGATTTTTTTTAATTAAA+AGG | - | chr4_3:1646054-1646073 | Msa0623910:intron | 5.0% |
| !!! | TAGATTTTTTTTAATTAAAA+GGG | - | chr4_3:1646055-1646074 | Msa0623910:intron | 5.0% |
| !!! | TTTTTTTAGTAATAAAATTA+AGG | - | chr4_3:1648100-1648119 | Msa0623910:intron | 5.0% |
| !!! | TTTTTTTTTTTTATAGATTT+TGG | + | chr4_3:1650515-1650534 | None:intergenic | 5.0% |
| ! | GAGAGAGAGAGAGTGTGAGA+AGG | + | chr4_3:1644923-1644942 | None:intergenic | 50.0% |
| TTTCGATTGGAGCGGCTTGT+GGG | - | chr4_3:1645561-1645580 | Msa0623910:CDS | 50.0% | |
| GGGCTAACCCAAGTCAAACA+AGG | + | chr4_3:1646904-1646923 | None:intergenic | 50.0% | |
| !! | ACTTGGGTTAGCCCGGTTTA+GGG | - | chr4_3:1646910-1646929 | Msa0623910:CDS | 50.0% |
| TTAGCCCGGTTTAGGGGAAT+GGG | - | chr4_3:1646917-1646936 | Msa0623910:CDS | 50.0% | |
| CAAACCCTTCAATCACGGGT+AGG | - | chr4_3:1646950-1646969 | Msa0623910:intron | 50.0% | |
| GTTCCCTACCCGTGATTGAA+GGG | + | chr4_3:1646957-1646976 | None:intergenic | 50.0% | |
| TGTTCCCTACCCGTGATTGA+AGG | + | chr4_3:1646958-1646977 | None:intergenic | 50.0% | |
| CCATAAGACACATGGTGGCA+TGG | + | chr4_3:1647610-1647629 | None:intergenic | 50.0% | |
| CCATGCCACCATGTGTCTTA+TGG | - | chr4_3:1647607-1647626 | Msa0623910:CDS | 50.0% | |
| GTCGACCATAAGACACATGG+TGG | + | chr4_3:1647615-1647634 | None:intergenic | 50.0% | |
| !! | AGTGTCGGCAAGAAAGGGTA+AGG | + | chr4_3:1647637-1647656 | None:intergenic | 50.0% |
| !! | GTTGGAAGTGTCGGCAAGAA+AGG | + | chr4_3:1647643-1647662 | None:intergenic | 50.0% |
| CGTTACAGTGGCCAACCAAA+AGG | + | chr4_3:1647947-1647966 | None:intergenic | 50.0% | |
| TTGGAACCTGAATGCAGGGA+CGG | - | chr4_3:1648483-1648502 | Msa0623910:intron | 50.0% | |
| GCTGCTATCAATGAAGCAGG+AGG | - | chr4_3:1648523-1648542 | Msa0623910:intron | 50.0% | |
| ! | TAAGACTTGCTCGAACAGCG+AGG | + | chr4_3:1648582-1648601 | None:intergenic | 50.0% |
| TCGCTGTTCGAGCAAGTCTT+AGG | - | chr4_3:1648581-1648600 | Msa0623910:intron | 50.0% | |
| CGCTGTTCGAGCAAGTCTTA+GGG | - | chr4_3:1648582-1648601 | Msa0623910:intron | 50.0% | |
| GCTGTTCGAGCAAGTCTTAG+GGG | - | chr4_3:1648583-1648602 | Msa0623910:intron | 50.0% | |
| TTCGAGCAAGTCTTAGGGGA+TGG | - | chr4_3:1648587-1648606 | Msa0623910:intron | 50.0% | |
| TTTGTACCTTGGAGACCTCC+AGG | - | chr4_3:1648615-1648634 | Msa0623910:intron | 50.0% | |
| GATTTACCTGGAGGTCTCCA+AGG | + | chr4_3:1648624-1648643 | None:intergenic | 50.0% | |
| TCAGATTCCAGCAGCACAGA+TGG | - | chr4_3:1648914-1648933 | Msa0623910:intron | 50.0% | |
| GAGCTACGATCTTGCGAACA+AGG | + | chr4_3:1649150-1649169 | None:intergenic | 50.0% | |
| TCGCAAGATCGTAGCTCACA+TGG | - | chr4_3:1649153-1649172 | Msa0623910:intron | 50.0% | |
| TCAACTCAGTCGGAACACCA+AGG | - | chr4_3:1649280-1649299 | Msa0623910:intron | 50.0% | |
| CAAACCAATTAGGGTCGCCT+TGG | + | chr4_3:1649478-1649497 | None:intergenic | 50.0% | |
| CACTTGTCACTCACACTAGC+TGG | - | chr4_3:1649746-1649765 | Msa0623910:intron | 50.0% | |
| GTTTCGATTGGAGCGGCTTG+TGG | - | chr4_3:1645560-1645579 | Msa0623910:CDS | 55.0% | |
| TTGTGGGCTTTCATGGCCGA+CGG | - | chr4_3:1645577-1645596 | Msa0623910:CDS | 55.0% | |
| TGGATCACGAGTCGATCCGT+CGG | + | chr4_3:1645596-1645615 | None:intergenic | 55.0% | |
| !! | TCATAGTGTCGGTGGCTTGC+TGG | - | chr4_3:1646775-1646794 | Msa0623910:intron | 55.0% |
| !! | GACTTGGGTTAGCCCGGTTT+AGG | - | chr4_3:1646909-1646928 | Msa0623910:CDS | 55.0% |
| !! | CTTGGGTTAGCCCGGTTTAG+GGG | - | chr4_3:1646911-1646930 | Msa0623910:CDS | 55.0% |
| GTTAGCCCGGTTTAGGGGAA+TGG | - | chr4_3:1646916-1646935 | Msa0623910:CDS | 55.0% | |
| TGGACCCATTCCCCTAAACC+GGG | + | chr4_3:1646924-1646943 | None:intergenic | 55.0% | |
| GTGGACCCATTCCCCTAAAC+CGG | + | chr4_3:1646925-1646944 | None:intergenic | 55.0% | |
| !! | CACGTGGGAAGTGCCTTTGA+TGG | + | chr4_3:1647518-1647537 | None:intergenic | 55.0% |
| !! | CATCAAAGGCACTTCCCACG+TGG | - | chr4_3:1647516-1647535 | Msa0623910:intron | 55.0% |
| CACAAGACCATCTGTGCTGC+TGG | + | chr4_3:1648924-1648943 | None:intergenic | 55.0% | |
| ! | CAGCAGCACAGATGGTCTTG+TGG | - | chr4_3:1648922-1648941 | Msa0623910:intron | 55.0% |
| CGTACCAAGGCGACCCTAAT+TGG | - | chr4_3:1649471-1649490 | Msa0623910:CDS | 55.0% | |
| GAGCGGCTTGTGGGCTTTCA+TGG | - | chr4_3:1645570-1645589 | Msa0623910:CDS | 60.0% | |
| AACCTGAATGCAGGGACGGC+CGG | - | chr4_3:1648487-1648506 | Msa0623910:intron | 60.0% | |
| ATGCAGGGACGGCCGGTATT+TGG | - | chr4_3:1648494-1648513 | Msa0623910:intron | 60.0% | |
| TACCGGCCGTCCCTGCATTC+AGG | + | chr4_3:1648492-1648511 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 1644918 | 1650906 | 1644918 | ID=Msa0623910;Name=Msa0623910 |
| chr4_3 | mRNA | 1644918 | 1650906 | 1644918 | ID=Msa0623910-mRNA-1;Parent=Msa0623910;Name=Msa0623910-mRNA-1;_AED=0.09;_eAED=0.09;_QI=176|0.66|0.8|0.9|1|1|10|620|549 |
| chr4_3 | exon | 1644918 | 1645691 | 1644918 | ID=Msa0623910-mRNA-1:exon:464;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1646175 | 1646408 | 1646175 | ID=Msa0623910-mRNA-1:exon:463;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1646523 | 1646683 | 1646523 | ID=Msa0623910-mRNA-1:exon:462;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1646831 | 1646944 | 1646831 | ID=Msa0623910-mRNA-1:exon:461;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1647035 | 1647094 | 1647035 | ID=Msa0623910-mRNA-1:exon:460;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1647188 | 1647324 | 1647188 | ID=Msa0623910-mRNA-1:exon:459;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1647550 | 1647660 | 1647550 | ID=Msa0623910-mRNA-1:exon:458;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1649395 | 1649647 | 1649395 | ID=Msa0623910-mRNA-1:exon:457;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1650175 | 1650273 | 1650175 | ID=Msa0623910-mRNA-1:exon:456;Parent=Msa0623910-mRNA-1 |
| chr4_3 | exon | 1650404 | 1650906 | 1650404 | ID=Msa0623910-mRNA-1:exon:455;Parent=Msa0623910-mRNA-1 |
| chr4_3 | five_prime_UTR | 1650731 | 1650906 | 1650731 | ID=Msa0623910-mRNA-1:five_prime_utr;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1650404 | 1650730 | 1650404 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1650175 | 1650273 | 1650175 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1649395 | 1649647 | 1649395 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1647550 | 1647660 | 1647550 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1647188 | 1647324 | 1647188 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1647035 | 1647094 | 1647035 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1646831 | 1646944 | 1646831 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1646523 | 1646683 | 1646523 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1646175 | 1646408 | 1646175 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | CDS | 1645538 | 1645691 | 1645538 | ID=Msa0623910-mRNA-1:cds;Parent=Msa0623910-mRNA-1 |
| chr4_3 | three_prime_UTR | 1644918 | 1645537 | 1644918 | ID=Msa0623910-mRNA-1:three_prime_utr;Parent=Msa0623910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
