AlfalfaGEDB | Msa0776480

M. sativa cultivar zhongmu-4 / Msa0776480

KEGG: K09487
GO: GO:0000166 GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0005788 GO:0006605 GO:0006810 GO:0006886 GO:0006950 GO:0006970 GO:0007275 GO:0008104 GO:0008144 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009639 GO:0009640 GO:0009651 GO:0009704 GO:0009791 GO:0009941 GO:0010035 GO:0010157 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0017076 GO:0030554 GO:0031090 GO:0031967 GO:0031974 GO:0031975 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0033036 GO:0033365 GO:0034613 GO:0035639 GO:0036094 GO:0042221 GO:0042802 GO:0042803 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0046983 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070013 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598 GO:0097159 GO:0097367 GO:0098588 GO:0098805 GO:1901265 GO:1901363 GO:1901700
PFAM: PF02518.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0776480	XP_013443515.1	99.214	763	6	0	139	901	29	791	0.0	1558

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0776480	sp\|Q9SIF2\|HS905_ARATH	83.423	742	115	3	160	898	42	778	0.0	1258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0776480	A0A072TVH5	99.214	763	6	0	139	901	29	791	0.0	1558

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001950	Msa0776480	0.823963	1.043512e-53	-8.615850e-47
Msa0012470	Msa0776480	0.811255	7.670467e-51	-8.615850e-47
Msa0017940	Msa0776480	0.828526	8.559889e-55	-8.615850e-47
Msa0020630	Msa0776480	0.824704	6.987552e-54	-8.615850e-47
Msa0024680	Msa0776480	0.803072	4.149808e-49	-8.615850e-47
Msa0027540	Msa0776480	0.861775	8.096235e-64	-8.615850e-47
Msa0029620	Msa0776480	0.826095	3.273742e-54	-8.615850e-47
Msa0030730	Msa0776480	0.812978	3.229233e-51	-8.615850e-47
Msa0032120	Msa0776480	0.847026	1.499794e-59	-8.615850e-47
Msa0032400	Msa0776480	0.846461	2.140996e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0776480	MtrunA17_Chr5g0420861	99.214	763	6	0	139	901	29	791	0.0	1558
Msa0776480	MtrunA17_Chr5g0447581	68.852	732	210	5	170	891	65	788	0.0	1004
Msa0776480	MtrunA17_Chr1g0156731	45.493	710	334	13	189	856	75	773	0.0	595
Msa0776480	MtrunA17_Chr6g0469201	45.655	679	346	10	189	856	2	668	0.0	573
Msa0776480	MtrunA17_Chr5g0446951	44.979	707	359	10	189	877	2	696	0.0	563
Msa0776480	MtrunA17_Chr5g0446941	44.979	707	359	10	189	877	2	696	0.0	563
Msa0776480	MtrunA17_Chr1g0202601	42.083	701	357	11	183	870	1	665	7.48e-172	514

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0776480	AT2G04030.1	83.423	742	115	3	160	898	42	778	1258
Msa0776480	AT2G04030.2	83.019	742	115	4	160	898	42	775	1245
Msa0776480	AT3G07770.1	67.486	692	222	2	191	880	94	784	977
Msa0776480	AT3G07770.3	67.486	692	222	2	191	880	94	784	977
Msa0776480	AT3G07770.2	67.486	692	222	2	191	880	94	784	977
Msa0776480	AT4G24190.1	45.134	709	338	14	189	857	74	771	581
Msa0776480	AT4G24190.2	45.134	709	338	14	189	857	74	771	581
Msa0776480	AT5G52640.1	44.648	710	368	11	189	885	2	699	567
Msa0776480	AT5G56030.1	45.870	678	345	9	189	856	2	667	558
Msa0776480	AT5G56000.1	45.768	697	349	11	189	875	2	679	558

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Find 239 sgRNAs with CRISPR-Local

Find 927 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAGTGAAAGTACAG+AGG	0.676881	5_2:+54355415	Msa0776480:CDS
AAAATTTCTCTCAGGTGACG+AGG	0.643353	5_2:+54353666	Msa0776480:intron
AAACTGAGAAGTATTGGGAC+TGG	0.537001	5_2:+54351748	Msa0776480:CDS
AAATAAGATTTATGGAATGA+TGG	0.523709	5_2:+54355325	Msa0776480:CDS
AAATATGACCTTAGTGATGG+GGG	0.637835	5_2:+54339025	Msa0776480:CDS
AAATTGTGATCCAGTATCAC+TGG	0.524468	5_2:+54355707	Msa0776480:three_prime_UTR
AACATACCTCAGTAGTAAAG+TGG	0.515214	5_2:-54352006	None:intergenic
AACTAATTCATGCTATTTGA+GGG	0.424050	5_2:-54355515	None:intergenic
AACTCATTGTACTCTTCCCT+TGG	0.439694	5_2:-54351938	None:intergenic
AACTGAGAAGTATTGGGACT+GGG	0.506667	5_2:+54351749	Msa0776480:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAGTTCCTTCACTAAATT+TGG	-	chr5_2:54340836-54340855	None:intergenic	30.0%
TGAGTAGTCTAAGAATACAA+AGG	-	chr5_2:54340870-54340889	None:intergenic	30.0%
CTAGATAAACAATAGTGCTA+TGG	-	chr5_2:54341030-54341049	None:intergenic	30.0%
AATTTATCAATCACATCAGC+AGG	+	chr5_2:54341205-54341224	Msa0776480:intron	30.0%
ACTCAACAACTATTGATATG+TGG	-	chr5_2:54341336-54341355	None:intergenic	30.0%
TTTACTGCTGTATATTTGTG+CGG	-	chr5_2:54341570-54341589	None:intergenic	30.0%
ATGATTGTTGTGTTATAGTG+TGG	-	chr5_2:54341913-54341932	None:intergenic	30.0%
GAATGTTACAATGGAAATTC+TGG	-	chr5_2:54341945-54341964	None:intergenic	30.0%
TTTCCATTGTAACATTCCAT+TGG	+	chr5_2:54341948-54341967	Msa0776480:intron	30.0%
TGTATGATTTCTACAAACCA+TGG	-	chr5_2:54342526-54342545	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	54338999	54355846	54338999	ID=Msa0776480;Name=Msa0776480
chr5_2	mRNA	54338999	54355846	54338999	ID=Msa0776480-mRNA-1;Parent=Msa0776480;Name=Msa0776480-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|0.85\|0.81\|0.86\|1\|1\|22\|350\|901
chr5_2	exon	54338999	54339062	54338999	ID=Msa0776480-mRNA-1:exon:16221;Parent=Msa0776480-mRNA-1
chr5_2	exon	54339715	54339752	54339715	ID=Msa0776480-mRNA-1:exon:16222;Parent=Msa0776480-mRNA-1
chr5_2	exon	54339847	54340157	54339847	ID=Msa0776480-mRNA-1:exon:16223;Parent=Msa0776480-mRNA-1
chr5_2	exon	54348228	54348411	54348228	ID=Msa0776480-mRNA-1:exon:16224;Parent=Msa0776480-mRNA-1
chr5_2	exon	54348529	54348602	54348529	ID=Msa0776480-mRNA-1:exon:16225;Parent=Msa0776480-mRNA-1
chr5_2	exon	54349573	54349698	54349573	ID=Msa0776480-mRNA-1:exon:16226;Parent=Msa0776480-mRNA-1
chr5_2	exon	54349778	54349871	54349778	ID=Msa0776480-mRNA-1:exon:16227;Parent=Msa0776480-mRNA-1
chr5_2	exon	54349969	54350052	54349969	ID=Msa0776480-mRNA-1:exon:16228;Parent=Msa0776480-mRNA-1
chr5_2	exon	54350142	54350285	54350142	ID=Msa0776480-mRNA-1:exon:16229;Parent=Msa0776480-mRNA-1
chr5_2	exon	54350549	54350665	54350549	ID=Msa0776480-mRNA-1:exon:16230;Parent=Msa0776480-mRNA-1
chr5_2	exon	54351582	54351629	54351582	ID=Msa0776480-mRNA-1:exon:16231;Parent=Msa0776480-mRNA-1
chr5_2	exon	54351720	54351800	54351720	ID=Msa0776480-mRNA-1:exon:16232;Parent=Msa0776480-mRNA-1
chr5_2	exon	54351917	54352021	54351917	ID=Msa0776480-mRNA-1:exon:16233;Parent=Msa0776480-mRNA-1
chr5_2	exon	54352103	54352243	54352103	ID=Msa0776480-mRNA-1:exon:16234;Parent=Msa0776480-mRNA-1
chr5_2	exon	54352638	54352730	54352638	ID=Msa0776480-mRNA-1:exon:16235;Parent=Msa0776480-mRNA-1
chr5_2	exon	54352878	54352955	54352878	ID=Msa0776480-mRNA-1:exon:16236;Parent=Msa0776480-mRNA-1
chr5_2	exon	54353040	54353294	54353040	ID=Msa0776480-mRNA-1:exon:16237;Parent=Msa0776480-mRNA-1
chr5_2	exon	54353477	54353579	54353477	ID=Msa0776480-mRNA-1:exon:16238;Parent=Msa0776480-mRNA-1
chr5_2	exon	54353680	54353854	54353680	ID=Msa0776480-mRNA-1:exon:16239;Parent=Msa0776480-mRNA-1
chr5_2	exon	54353954	54354059	54353954	ID=Msa0776480-mRNA-1:exon:16240;Parent=Msa0776480-mRNA-1
chr5_2	exon	54355121	54355210	54355121	ID=Msa0776480-mRNA-1:exon:16241;Parent=Msa0776480-mRNA-1
chr5_2	exon	54355302	54355846	54355302	ID=Msa0776480-mRNA-1:exon:16242;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54338999	54339062	54338999	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54339715	54339752	54339715	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54339847	54340157	54339847	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54348228	54348411	54348228	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54348529	54348602	54348529	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54349573	54349698	54349573	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54349778	54349871	54349778	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54349969	54350052	54349969	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54350142	54350285	54350142	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54350549	54350665	54350549	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54351582	54351629	54351582	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54351720	54351800	54351720	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54351917	54352021	54351917	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54352103	54352243	54352103	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54352638	54352730	54352638	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54352878	54352955	54352878	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54353040	54353294	54353040	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54353477	54353579	54353477	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54353680	54353854	54353680	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54353954	54354059	54353954	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54355121	54355210	54355121	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	CDS	54355302	54355496	54355302	ID=Msa0776480-mRNA-1:cds;Parent=Msa0776480-mRNA-1
chr5_2	three_prime_UTR	54355497	54355846	54355497	ID=Msa0776480-mRNA-1:three_prime_utr;Parent=Msa0776480-mRNA-1

Gene Sequence

>Msa0776480

ATGGGGGCTTTATGCCTGACAGGTCCAAATATGACCTTAGTGATGGGGGCTTTATGCCCTGGTGTCGGGAAAAACAGGGTGTTACAATTGGTATCAGAGCAGAGAAAAGGAGGAAACCTGGAAGCTGCAAATTTTATCTGTTATAGGAGAACTAGAATGGCTGGCAGGAATCACTACAAGAAAAACTGCATTTTGCGACCTTTAAAATGGCAGATTGCGACTGTTAGAAGGGTCGCAGATGTACAATTGCGACCCTTCCCCAACAGTCACGGATGTTGGGGTCGCAAGTGTCTTTTGCGACCCTTCATAGAACAGCCGCACCAACTGCCGCAAAAGGCACTGCGACAGTTACTAAGGGTCGCAAATGAGGAGATTCAAATGGATTTCAAGGGACTTGCGACAGTTGGGGAAGGACCTTCTTCCACTCTCAGAAGCGCTTTTCTCCCACCGCAACCTCGCAGAAATCGCTTTTCTTCCACCGGTTTGAAGTGTAAACACCATGACAGAAGACGAACCGGCAGACTTTCTGTCCGTTGTGAGGCTGCTGTTGCTGAGAAAGAAGAGGCCAGTGGTGAGAAGTTTGAGTATCAAGCCGAGGTGAGCCGATTGATGGATTTGATTGTTCACAGTCTGTATAGTCACAAGGAAGTTTTTCTCAGAGAACTTGTGAGTAATGCTAGTGATGCTTTGGACAAATTGAGGTTTTTAAGTGTGACTGAGCCTTCATTGCTTGGAGAGTCTGGAGAATTAGCGATTCGCATCAAGCCCGATCCGGACAATGGAACTATTACTATAACTGATTCCGGTATTGGAATGACCAAAGAAGAGCTCATTGATTGTCTTGGAACTATTGCTCAGAGTGGTACCTCAAAGTTTTTGAAGGCACTTAAGGAAAACAAGGATTTAGGAGCAGATAATGGATTGATTGGTCAATTTGGTGTTGGATTCTACTCTGCATTTCTTGTTGCTGACAGGGTTGTTGTCTCTACAAAGAGCCCTAGATCAGATAAGCAATATGTATGGGAAGCTGTAGCTGATAGCAGCTCTTATGTGATAAGGGAAGAAACTGATCCTGAAAAGCTTCTACACCGTGGTACACAGATTACACTTCACTTGAGACCGGATGATAAGTATGAATTCTCAGAGCCAACCAAAATTCAGAGTTTGGTGAAGAACTACTCGCAGTTTGTTTCCTTCCCCATCTATACATGGCAAGAAAAATCTAGAACTGTGGAGGTGGAAGAGGAAGAAGAACCTAAAGAAGGGGAAGAACCGAAAGCAGAGGGTGATACAAACAAGACAAAAAAGACTAAAACTGAGAAGTATTGGGACTGGGAATTAGCCAACGAGACAAAGCCAATATGGATGCGGAATTCAAAGGATACTCCAAGGGAAGAGTACAATGAGTTTTACAAAAAGACTTTTAATGAATTCTTGGAACCAGTTGCATATACCCACTTTACTACTGAGGGTGAGGTTGAGTTCAGAAGCATTCTATATATTCCAAGTATGGGACCTCTCAACAATGAAGAAGTAGTGAACCCTAAAACAAAGAACATACGCCTGTATGTAAAGCGTGTGTTCATCTCAGATGATTTTGATGGTGAACTGTTTCCACGTTACTTGAGCTTTGTGAAGGGTGTGGTCGATTCAAATGACCTTCCTCTGAATGTTTCTCGGGAGATCCTTCAAGAAAGCAGAATTGTAAGGATAATGAGAAAGAGACTTGTCAGGAAGACATTTGATATGATTCAAGATCTTGCTGAAGGTGAAAATAAGGAGGATTACAAGAAATTCTGGGAGAACTTTGGTAGGTTTATTAAGTTGGGATGCATCGAGGACAGTGGAAATCATAAGCGCATAACACCACTGTTGAGATTTTACACTTCCAAAAGTGAGGAGGAACTTAAAAGCCTAGATGAGTATGTTGAAAACATGGGTGAAAATCAAAATGCCATCTATTACCTAGCAACTGACAGCTTGAAAAGTGCAAAGACTGCTCCATTTTTAGAGAAGTTGGTTCAGAAAGATATTGAGGTTCTTTATTTGGTTGATCCTATTGACGAGGTTGCCATTCAGAACCTACAAACATACAAAGAAAAGAAATTTGTTGATATCAGCAAGGAAGATTTGGAATTAGGTGACGAGGATGAGGTCAAAGAGAGGGAAACCAAGCAAGAATACAATCTACTTTGTGATTGGATAAAACAACAGCTCGGTGATAATGTGGCTAAAGTTCAAGTCTCTAAGCGTTTGAGCTCATCTCCGTGTGTGCTTGTATCTGGAAAGTTTGGTTGGTCTGCAAATATGGAAAGATTAATGAAGGCACAGGCTCTTGGAGACCAGGCAAGTTTGGAGTTTATGAGAGGGAGGAGAATATTGGAGATTAATCCAGATCATCCCATCATCAAAGATTTAAGTGCTGCCTGCAAGAATGCTCCCGACAGCAGCGAAGCAAAGAGAGCTGTTGAGCTCTTATATGATACAGCACAAATTTCTAGTGGATTTTCTCCTGAGAGCCCTGCTGAGTTAGGAAATAAGATTTATGGAATGATGGCGTTGGCCTTGGGAGGAAGATGGGGTAGAACCGAAGAAGAGGGAGATGCACCAGCAGAGGCTGATTCAAAAGAAAGTGAAAGTACAGAGGCTGAAGTTTTTGAACCTTCTGAAGTCATAGCAGAAAATGATCCTTGGACAACAGATTAG

Protein sequence

>Msa0776480

MGALCLTGPNMTLVMGALCPGVGKNRVLQLVSEQRKGGNLEAANFICYRRTRMAGRNHYKKNCILRPLKWQIATVRRVADVQLRPFPNSHGCWGRKCLLRPFIEQPHQLPQKALRQLLRVANEEIQMDFKGLATVGEGPSSTLRSAFLPPQPRRNRFSSTGLKCKHHDRRRTGRLSVRCEAAVAEKEEASGEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTEPSLLGESGELAIRIKPDPDNGTITITDSGIGMTKEELIDCLGTIAQSGTSKFLKALKENKDLGADNGLIGQFGVGFYSAFLVADRVVVSTKSPRSDKQYVWEAVADSSSYVIREETDPEKLLHRGTQITLHLRPDDKYEFSEPTKIQSLVKNYSQFVSFPIYTWQEKSRTVEVEEEEEPKEGEEPKAEGDTNKTKKTKTEKYWDWELANETKPIWMRNSKDTPREEYNEFYKKTFNEFLEPVAYTHFTTEGEVEFRSILYIPSMGPLNNEEVVNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMRKRLVRKTFDMIQDLAEGENKEDYKKFWENFGRFIKLGCIEDSGNHKRITPLLRFYTSKSEEELKSLDEYVENMGENQNAIYYLATDSLKSAKTAPFLEKLVQKDIEVLYLVDPIDEVAIQNLQTYKEKKFVDISKEDLELGDEDEVKERETKQEYNLLCDWIKQQLGDNVAKVQVSKRLSSSPCVLVSGKFGWSANMERLMKAQALGDQASLEFMRGRRILEINPDHPIIKDLSAACKNAPDSSEAKRAVELLYDTAQISSGFSPESPAELGNKIYGMMALALGGRWGRTEEEGDAPAEADSKESESTEAEVFEPSEVIAENDPWTTD*