AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0546840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546840 MtrunA17_Chr4g0028601 80.385 260 2 2 1 211 1 260 5.66e-135 390
Msa0546840 MtrunA17_Chr4g0043731 48.858 219 63 2 42 211 34 252 1.73e-53 180
Msa0546840 MtrunA17_Chr5g0421251 36.986 219 85 4 46 212 34 251 1.66e-36 133
Msa0546840 MtrunA17_Chr1g0152141 43.889 180 71 3 61 211 82 260 6.80e-36 132
Msa0546840 MtrunA17_Chr1g0152151 43.889 180 71 3 61 211 82 260 6.80e-36 132
Msa0546840 MtrunA17_Chr1g0196761 35.021 237 105 5 8 203 10 238 1.50e-31 120
Msa0546840 MtrunA17_Chr1g0196751 36.681 229 103 5 14 203 13 238 2.14e-31 120
Msa0546840 MtrunA17_Chr8g0342341 40.152 132 79 0 72 203 108 239 2.33e-25 103
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0546840 AT2G28000.1 63.755 229 33 3 33 211 31 259 3.63e-85 263
Msa0546840 AT5G18820.3 44.939 247 81 4 15 211 5 246 8.55e-45 155
Msa0546840 AT5G18820.1 44.939 247 81 4 15 211 5 246 8.84e-44 154
Msa0546840 AT5G18820.2 63.309 139 51 0 73 211 2 140 1.33e-43 152
Msa0546840 AT5G56500.2 37.548 261 107 6 1 206 1 260 5.11e-38 139
Msa0546840 AT5G56500.1 37.548 261 107 6 1 206 1 260 5.11e-38 139
Msa0546840 AT1G55490.5 44.444 180 70 3 61 211 91 269 3.77e-36 134
Msa0546840 AT1G55490.1 44.444 180 70 3 61 211 91 269 3.77e-36 134
Msa0546840 AT1G55490.3 44.444 180 70 3 61 211 91 269 3.77e-36 134
Msa0546840 AT1G55490.4 44.444 180 70 3 61 211 91 269 3.77e-36 134
Msa0546840 AT1G55490.2 44.444 180 70 3 61 211 91 269 3.77e-36 134
Msa0546840 AT3G13470.1 43.575 179 71 3 61 210 87 264 6.51e-35 130
Msa0546840 AT1G26230.5 33.178 214 90 4 45 206 36 248 1.46e-30 117
Msa0546840 AT1G26230.2 33.178 214 90 4 45 206 36 248 1.90e-30 117
Msa0546840 AT1G26230.1 33.178 214 90 4 45 206 36 248 2.95e-30 117
Msa0546840 AT1G26230.3 43.939 132 73 1 75 206 58 188 6.24e-30 116
Msa0546840 AT1G26230.4 36.041 197 92 4 43 206 1 196 6.55e-30 116
Msa0546840 AT2G33210.2 34.310 239 112 5 4 203 6 238 1.23e-29 115
Msa0546840 AT2G33210.1 34.310 239 112 5 4 203 6 238 1.40e-29 115
Msa0546840 AT3G23990.1 35.577 208 95 4 35 203 30 237 1.87e-28 112
Msa0546840 AT3G13860.1 41.667 132 77 0 72 203 106 237 1.14e-25 104

Find 171 sgRNAs with CRISPR-Local

Find 292 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCAAGATTTGTAACAAAT+TGG 0.150058 4_1:-39248222 None:intergenic
GGAGAAGGGAATGATAAATT+TGG 0.204553 4_1:+39250167 Msa0546840:three_prime_UTR
GGCAGCAAAAGTTGCATTCT+TGG 0.207810 4_1:-39249106 None:intergenic
GACTACAACGGCTTCGATTT+TGG 0.214195 4_1:+39247678 Msa0546840:CDS
GGCAGCAGCCACAGCTGCCC+TGG 0.235751 4_1:-39249982 None:intergenic
CAACGAAGTGAAGTGGGTTT+AGG 0.237925 4_1:-39246221 None:intergenic
CCAAATCCTTGGAGCTTTGA+TGG 0.265401 4_1:-39248438 None:intergenic
GAGTTCCAGGCCAGTGATTT+GGG 0.275875 4_1:+39248807 Msa0546840:three_prime_UTR
CTCAAGATTTGTAACAAATT+GGG 0.277700 4_1:-39248221 None:intergenic
TGAGTTCCAGGCCAGTGATT+TGG 0.282182 4_1:+39248806 Msa0546840:three_prime_UTR
GCAGATGCTGCTTCAGTGGC+TGG 0.299213 4_1:+39249916 Msa0546840:three_prime_UTR
GTGAAGTGGGTTTAGGGTTT+GGG 0.299776 4_1:-39246214 None:intergenic
ACTGCTAGGTGCTGAGTTCC+AGG 0.304928 4_1:+39248794 Msa0546840:intron
AACGAAGTGAAGTGGGTTTA+GGG 0.307821 4_1:-39246220 None:intergenic
ATATCATCTCCACCTTTAAC+AGG 0.315746 4_1:-39247823 None:intergenic
AGCCACAGCTGCCCTGGGCT+AGG 0.325057 4_1:-39249976 None:intergenic
TTCAATTGAACAACTTGGTT+TGG 0.329096 4_1:+39248848 Msa0546840:three_prime_UTR
AGTGAAGTGGGTTTAGGGTT+TGG 0.329328 4_1:-39246215 None:intergenic
CTTTGATGGCAGCCACATTA+AGG 0.329763 4_1:-39248424 None:intergenic
AAAGGTGGAGATGATATAAA+AGG 0.339200 4_1:+39247829 Msa0546840:CDS
CCATCAAAGCTCCAAGGATT+TGG 0.343094 4_1:+39248438 Msa0546840:three_prime_UTR
TTCTTCTCTCACCAAATCCT+TGG 0.345315 4_1:-39248449 None:intergenic
TGATAAAACAGTAGCGGCTT+TGG 0.352770 4_1:+39247774 Msa0546840:CDS
AAGTTGGCTAGGCCTGTTAA+AGG 0.361241 4_1:+39247811 Msa0546840:CDS
TGAAGGGAGGAATGTTGTTT+TGG 0.363805 4_1:+39247272 Msa0546840:intron
CAGTTTCGACTCGGAGAAAC+TGG 0.368068 4_1:+39248984 Msa0546840:three_prime_UTR
TTATTGTTGTAGGTTAATTA+CGG 0.375832 4_1:+39250037 Msa0546840:three_prime_UTR
ATTGAGGAAGGTATTGTTCC+TGG 0.376386 4_1:+39249129 Msa0546840:three_prime_UTR
CGAGAGGATTGCTAAATATC+TGG 0.390368 4_1:+39249009 Msa0546840:three_prime_UTR
GCAGCAGCCACAGCTGCCCT+GGG 0.393538 4_1:-39249981 None:intergenic
AGATATCACTGGTGAGGCTT+TGG 0.395603 4_1:+39248372 Msa0546840:three_prime_UTR
AAACGAGGAGGAAGACTCTA+TGG 0.398802 4_1:-39248030 None:intergenic
TGATGCAGCATCAGCAATAA+TGG 0.409954 4_1:-39248905 None:intergenic
GCTGTTGCTTCTATTTCTGC+TGG 0.418816 4_1:+39247939 Msa0546840:intron
TGCTCAAATGCTGGAATAGA+AGG 0.419894 4_1:+39249771 Msa0546840:three_prime_UTR
CTTAAACGGTAAGGCCTTGT+GGG 0.430025 4_1:-39250004 None:intergenic
CAAAGGATGAGTTGCAATCC+GGG 0.436667 4_1:+39248926 Msa0546840:three_prime_UTR
GGTGGAAGAGCTTGAGAAGT+TGG 0.438321 4_1:+39247795 Msa0546840:CDS
GCTGGAAATGATGAGTTGAT+TGG 0.440283 4_1:+39247957 Msa0546840:CDS
ATAATAATCTAAAACTTAAA+CGG 0.441841 4_1:-39250018 None:intergenic
GCTGTGGCTGCTGCCCCACA+AGG 0.444657 4_1:+39249990 Msa0546840:three_prime_UTR
AACAAGAAGGCCCAAATCAC+TGG 0.445601 4_1:-39248817 None:intergenic
TCAAAGGATGAGTTGCAATC+CGG 0.445704 4_1:+39248925 Msa0546840:three_prime_UTR
AATGATTGCAAATGTAAGTA+CGG 0.447905 4_1:-39250243 None:intergenic
GCATAGCACGGCGTGAATCT+TGG 0.451358 4_1:-39246561 None:intergenic
AGAACGGAGAATTGAGGTTG+AGG 0.455957 4_1:-39246319 None:intergenic
GGACTTCTCAGTGTGACATC+AGG 0.457635 4_1:+39247721 Msa0546840:CDS
GCGTTGGTTGAAGCCATGTT+TGG 0.459068 4_1:-39246291 None:intergenic
GAAAATTAGAAGTGGTGAAT+GGG 0.459259 4_1:+39249809 Msa0546840:three_prime_UTR
GCTGAAGCAATTGGCAAGGT+TGG 0.460825 4_1:+39247990 Msa0546840:CDS
GGATGAGTTTGGCAGTCCTA+AGG 0.461802 4_1:+39247293 Msa0546840:CDS
CGAAACTCAACGAAGTGAAG+TGG 0.461915 4_1:-39246228 None:intergenic
AAAAGATATAATTCCTCTGT+TGG 0.463003 4_1:+39248305 Msa0546840:three_prime_UTR
TAGAAGTGGTGAATGGGAGT+TGG 0.463509 4_1:+39249815 Msa0546840:three_prime_UTR
TGCTTATGTTCCAGCAATCA+AGG 0.463871 4_1:+39249179 Msa0546840:three_prime_UTR
CATTCCTTCTTCGACTTCGA+CGG 0.464884 4_1:-39248060 None:intergenic
GCTCGGGAAATCATTAAGCT+TGG 0.465886 4_1:+39247700 Msa0546840:CDS
TGCTGCTTCAGTGGCTGGGA+TGG 0.467173 4_1:+39249921 Msa0546840:three_prime_UTR
CTCTGCAGATGCTGCTTCAG+TGG 0.471671 4_1:+39249912 Msa0546840:three_prime_UTR
TCAAGATTTGTAACAAATTG+GGG 0.473091 4_1:-39248220 None:intergenic
AGAAAATTAGAAGTGGTGAA+TGG 0.475205 4_1:+39249808 Msa0546840:three_prime_UTR
CAGATGCTGCTTCAGTGGCT+GGG 0.478691 4_1:+39249917 Msa0546840:three_prime_UTR
AAGTTTACGATCCTCAAGTT+CGG 0.483262 4_1:-39249070 None:intergenic
AGGCACAAACGAGTCTTAGC+AGG 0.488076 4_1:+39246452 Msa0546840:intron
ATAATGGTGGTAGGAATCCT+TGG 0.490163 4_1:-39248889 None:intergenic
AGCCTAGCCCAGGGCAGCTG+TGG 0.493925 4_1:+39249974 Msa0546840:three_prime_UTR
TAAAACAGTAGCGGCTTTGG+TGG 0.499019 4_1:+39247777 Msa0546840:CDS
CTTTCTTCAGTTGTGCAACC+CGG 0.500367 4_1:-39248944 None:intergenic
GAAGGCCCAAATCACTGGCC+TGG 0.503715 4_1:-39248812 None:intergenic
TCAGACATTGCAATATTGAC+AGG 0.504215 4_1:+39248482 Msa0546840:three_prime_UTR
AATAGAAGGTGAAGTAGTTG+TGG 0.504535 4_1:+39249785 Msa0546840:three_prime_UTR
TGTAATTAACCCTCCCATGT+TGG 0.504603 4_1:-39246483 None:intergenic
GTCAATATTGCAATGTCTGA+AGG 0.505082 4_1:-39248479 None:intergenic
CCCTTGTTGTGACAAGCTGC+TGG 0.505765 4_1:+39248398 Msa0546840:three_prime_UTR
TGGTTAGTTACCTGGTTGGT+AGG 0.506460 4_1:-39246342 None:intergenic
AGGAGCTGACATCGTTCAAA+AGG 0.507340 4_1:+39249230 Msa0546840:three_prime_UTR
ATCATTGATTGCTCAAATGC+TGG 0.508029 4_1:+39249762 Msa0546840:three_prime_UTR
TTGAAGTGCTTTCAACAAGA+AGG 0.508700 4_1:-39248830 None:intergenic
ACTAATGACTCAGCTGGAGA+TGG 0.509296 4_1:+39247655 Msa0546840:CDS
AGCACTTCAATTGAACAACT+TGG 0.512887 4_1:+39248843 Msa0546840:three_prime_UTR
TCATCGACCTGCGAAGGTAC+AGG 0.515519 4_1:+39249885 Msa0546840:three_prime_UTR
AAGTAGAGGTCATCAACAAT+TGG 0.515774 4_1:+39246133 None:intergenic
TCTATGGATAAAACACCATC+AGG 0.519843 4_1:-39248014 None:intergenic
GTTGTTGAAAAGCCTAGCCC+AGG 0.521037 4_1:+39249964 Msa0546840:three_prime_UTR
ATGATTGCAAATGTAAGTAC+GGG 0.522822 4_1:-39250242 None:intergenic
ACAACCGTCGAAGTCGAAGA+AGG 0.524172 4_1:+39248056 Msa0546840:CDS
CACTTGCTTTAACCACAAAA+CGG 0.526937 4_1:-39246519 None:intergenic
CTTCGGCAATGATAAGCAAA+GGG 0.527412 4_1:-39248351 None:intergenic
AGCCTCACCAGTGATATCTT+CGG 0.529074 4_1:-39248368 None:intergenic
AATCTAAAACTTAAACGGTA+AGG 0.533828 4_1:-39250013 None:intergenic
AATCCTGTGTCAATCAAGAA+AGG 0.534087 4_1:+39247748 Msa0546840:CDS
AGTAAAACTAATGACTCAGC+TGG 0.535745 4_1:+39247649 Msa0546840:CDS
GGATCGTAAACTTAGAATTG+AGG 0.536649 4_1:+39249080 Msa0546840:three_prime_UTR
GGTAGGAGAACGGAGAATTG+AGG 0.536812 4_1:-39246325 None:intergenic
AGCAGGAAGGCGAACCAACA+TGG 0.541019 4_1:+39246469 Msa0546840:CDS
TGGTGGAGTGGCAGTCATCA+AGG 0.542101 4_1:+39249029 Msa0546840:three_prime_UTR
ATTCCTTTCTTGATTGACAC+AGG 0.542961 4_1:-39247751 None:intergenic
ACAATGATTGCTGAAGCAAT+TGG 0.546352 4_1:+39247981 Msa0546840:CDS
CAGATATTTAGCAATCCTCT+CGG 0.546912 4_1:-39249008 None:intergenic
TGAGGTTGAGGATAGAGCGT+TGG 0.551901 4_1:-39246307 None:intergenic
ACTTAAACGGTAAGGCCTTG+TGG 0.553935 4_1:-39250005 None:intergenic
GAAGGTATTGTTCCTGGCGG+AGG 0.554238 4_1:+39249135 Msa0546840:three_prime_UTR
AGATATTTAGCAATCCTCTC+GGG 0.555378 4_1:-39249007 None:intergenic
ATTTGAGCAATCAATGATGC+AGG 0.556489 4_1:-39249757 None:intergenic
TCCTGGCGGAGGTACAGCAT+TGG 0.556861 4_1:+39249146 Msa0546840:three_prime_UTR
ATCAACAATTGGTGAAGAGT+AGG 0.558233 4_1:+39246144 Msa0546840:five_prime_UTR
CGTCGAAGTCGAAGAAGGAA+TGG 0.560458 4_1:+39248061 Msa0546840:CDS
TATCCACACTCTTCCAAACA+TGG 0.562860 4_1:+39246278 Msa0546840:exon
ACCAGCAGCTTGTCACAACA+AGG 0.563088 4_1:-39248399 None:intergenic
AGGAACAATACCTTCCTCAA+TGG 0.564642 4_1:-39249127 None:intergenic
GAGCACACCTGTACCTTCGC+AGG 0.566272 4_1:-39249892 None:intergenic
CTAATGACTCAGCTGGAGAT+GGG 0.568805 4_1:+39247656 Msa0546840:CDS
ACCAATGCTGTACCTCCGCC+AGG 0.569522 4_1:-39249147 None:intergenic
AACAATTGGTGAAGAGTAGG+AGG 0.572932 4_1:+39246147 Msa0546840:five_prime_UTR
CAGAAAAGTGAAAGAGCTTG+TGG 0.573887 4_1:+39250073 Msa0546840:three_prime_UTR
GAAGAGTGTGGATAAGATGA+TGG 0.575587 4_1:-39246269 None:intergenic
AACTAGAAGACGCAGATGAG+AGG 0.576895 4_1:+39249205 Msa0546840:three_prime_UTR
TATTGCTGATGCTGCATCAA+AGG 0.580565 4_1:+39248909 Msa0546840:three_prime_UTR
GCAGGAAGGCGAACCAACAT+GGG 0.584017 4_1:+39246470 Msa0546840:CDS
ATTGGCAAGGTTGGACCTGA+TGG 0.586040 4_1:+39247999 Msa0546840:CDS
AGGATTTGGTGAGAGAAGAA+AGG 0.586510 4_1:+39248452 Msa0546840:three_prime_UTR
CTCGGAGAAACTGGCCCGAG+AGG 0.590711 4_1:+39248993 Msa0546840:three_prime_UTR
GTGGTAGGAATCCTTGGAGA+TGG 0.595793 4_1:-39248883 None:intergenic
ATCATTGCCGAAGATATCAC+TGG 0.598076 4_1:+39248361 Msa0546840:three_prime_UTR
TCTTCGGCAATGATAAGCAA+AGG 0.598336 4_1:-39248352 None:intergenic
GCATCAGCAATAATGGTGGT+AGG 0.598591 4_1:-39248898 None:intergenic
ATGACTTGTAGATTGACAGA+GGG 0.604162 4_1:+39248188 Msa0546840:intron
TGCTACAGAGACCGAACTTG+AGG 0.605909 4_1:+39249059 Msa0546840:three_prime_UTR
GAAATGGTTAGTTACCTGGT+TGG 0.606997 4_1:-39246346 None:intergenic
GTTGTGGAGAAAATTAGAAG+TGG 0.607273 4_1:+39249801 Msa0546840:three_prime_UTR
ACGGCGTGAATCTTGGTCAA+AGG 0.607568 4_1:-39246554 None:intergenic
AAGAGCTTGAGAAGTTGGCT+AGG 0.608935 4_1:+39247800 Msa0546840:CDS
AATATTGCAATGTCTGAAGG+AGG 0.610140 4_1:-39248476 None:intergenic
GAAGACGCAGATGAGAGGCT+AGG 0.612286 4_1:+39249210 Msa0546840:three_prime_UTR
CAAGATTTGTAACAAATTGG+GGG 0.614790 4_1:-39248219 None:intergenic
TTGGCTAGGCCTGTTAAAGG+TGG 0.615079 4_1:+39247814 Msa0546840:CDS
TTGCTAAATATCTGGTGGAG+TGG 0.615453 4_1:+39249017 Msa0546840:three_prime_UTR
TCTCCGTTCTCCTACCAACC+AGG 0.616314 4_1:+39246332 Msa0546840:CDS
TTACCTGGTTGGTAGGAGAA+CGG 0.618698 4_1:-39246335 None:intergenic
CAAAGGGGCTCTCAATTGAG+TGG 0.620297 4_1:-39248335 None:intergenic
TTCAACAACAATGGCCTGTG+TGG 0.620761 4_1:-39249950 None:intergenic
ATTCTCATAAGTGTCTGTCA+TGG 0.622423 4_1:-39249847 None:intergenic
AGCTGCTGGTATCCTTAATG+TGG 0.624988 4_1:+39248412 Msa0546840:three_prime_UTR
GAGGATTGCTAAATATCTGG+TGG 0.625852 4_1:+39249012 Msa0546840:three_prime_UTR
AAGATTTGTAACAAATTGGG+GGG 0.629058 4_1:-39248218 None:intergenic
GAGACGACTCAGTTTCGACT+CGG 0.629143 4_1:+39248975 Msa0546840:three_prime_UTR
GGAAGGCGAACCAACATGGG+AGG 0.631849 4_1:+39246473 Msa0546840:CDS
GAAACTCAACGAAGTGAAGT+GGG 0.636002 4_1:-39246227 None:intergenic
TCTGAGTCATCGACCTGCGA+AGG 0.636781 4_1:+39249879 Msa0546840:three_prime_UTR
GGAGTGGCAGTCATCAAGGT+CGG 0.637367 4_1:+39249033 Msa0546840:three_prime_UTR
TGCCGAAGATATCACTGGTG+AGG 0.639474 4_1:+39248366 Msa0546840:three_prime_UTR
AAGCCATGTTTGGAAGAGTG+TGG 0.640694 4_1:-39246281 None:intergenic
TTGTTGAAAAGCCTAGCCCA+GGG 0.641963 4_1:+39249965 Msa0546840:three_prime_UTR
TCGAAAAGTGACCATCTCCA+AGG 0.643733 4_1:+39248872 Msa0546840:three_prime_UTR
TATGACTTGTAGATTGACAG+AGG 0.649175 4_1:+39248187 Msa0546840:intron
ATATTGCAATGTCTGAAGGA+GGG 0.650737 4_1:-39248475 None:intergenic
TGGCTGCCATCAAAGCTCCA+AGG 0.650879 4_1:+39248432 Msa0546840:three_prime_UTR
AGGAATTGATAAAACAGTAG+CGG 0.654535 4_1:+39247768 Msa0546840:CDS
GAAGGCGAACCAACATGGGA+GGG 0.655547 4_1:+39246474 Msa0546840:CDS
GATTGCTGAAGCAATTGGCA+AGG 0.668567 4_1:+39247986 Msa0546840:CDS
ACAAACGAGTCTTAGCAGGA+AGG 0.673717 4_1:+39246456 Msa0546840:CDS
TTAAACGGTAAGGCCTTGTG+GGG 0.676362 4_1:-39250003 None:intergenic
GACGGTTGTCTCAAACGAGG+AGG 0.683850 4_1:-39248042 None:intergenic
CGAAGTCGAAGAAGGAATGG+AGG 0.684643 4_1:+39248064 Msa0546840:CDS
AGCTGGAGATGGGACTACAA+CGG 0.691077 4_1:+39247666 Msa0546840:CDS
TGCAGCATCAGCAATAATGG+TGG 0.697793 4_1:-39248902 None:intergenic
TGGGATGGTCTTGACCACAC+AGG 0.718657 4_1:+39249936 Msa0546840:three_prime_UTR
GAGGAAGGTATTGTTCCTGG+CGG 0.718906 4_1:+39249132 Msa0546840:three_prime_UTR
TTCGGCAATGATAAGCAAAG+GGG 0.721019 4_1:-39248350 None:intergenic
CCAGCAGCTTGTCACAACAA+GGG 0.734995 4_1:-39248398 None:intergenic
TTCGACGGTTGTCTCAAACG+AGG 0.759858 4_1:-39248045 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTTTTTTTTTTTTTTTTTGA+AGG + chr4_1:39247255-39247274 Msa0546840:intron 10.0%
!!! ATAATAATCTAAAACTTAAA+CGG - chr4_1:39250021-39250040 None:intergenic 10.0%
!! ATTAAATGAAAATGAATGAA+GGG - chr4_1:39246372-39246391 None:intergenic 15.0%
!! AATTAAATGAAAATGAATGA+AGG - chr4_1:39246373-39246392 None:intergenic 15.0%
!!! ATAAATCTGAATGTATTTTT+CGG + chr4_1:39246813-39246832 Msa0546840:intron 15.0%
!!! GTTGTTTTTATAAACTATAT+TGG + chr4_1:39246955-39246974 Msa0546840:intron 15.0%
!!! TTAATATTGTTGCTATTATA+TGG + chr4_1:39247213-39247232 Msa0546840:intron 15.0%
!!! TAATATTGTTGCTATTATAT+GGG + chr4_1:39247214-39247233 Msa0546840:intron 15.0%
!!! TATTCTTTTTTTGTTTGAAT+CGG + chr4_1:39247575-39247594 Msa0546840:intron 15.0%
!!! TATATGTATTCATTGTTTTT+TGG + chr4_1:39248516-39248535 Msa0546840:intron 15.0%
!! TGTTTAATCATGTTAAATAA+TGG + chr4_1:39248598-39248617 Msa0546840:intron 15.0%
!!! AAATAATATCAACATTTTCA+GGG + chr4_1:39249372-39249391 Msa0546840:intron 15.0%
!!! TTTTAGATTATTATTGTTGT+AGG + chr4_1:39250027-39250046 Msa0546840:three_prime_UTR 15.0%
!! TTAAATGAAAATGAATGAAG+GGG - chr4_1:39246371-39246390 None:intergenic 20.0%
!! TTGAATGTAATTATATGTGT+TGG + chr4_1:39246658-39246677 Msa0546840:intron 20.0%
!! TACATTTCAAAAAGATACAT+GGG - chr4_1:39247098-39247117 None:intergenic 20.0%
!!! TTTTTTTTTTTTTTGAAGGG+AGG + chr4_1:39247259-39247278 Msa0546840:intron 20.0%
!! TACTATAAGAACATTTGATT+TGG + chr4_1:39247861-39247880 Msa0546840:intron 20.0%
!!! AGGAATTATATCTTTTATTG+CGG - chr4_1:39248301-39248320 None:intergenic 20.0%
!!! CATAAACTAAATTTTTGAAC+AGG - chr4_1:39248629-39248648 None:intergenic 20.0%
!!! CAAATAATATCAACATTTTC+AGG + chr4_1:39249371-39249390 Msa0546840:intron 20.0%
!! GCTTGAAACATTAATTTATA+AGG - chr4_1:39249410-39249429 None:intergenic 20.0%
!! AAAAAGGGATGAAAAATAAA+TGG - chr4_1:39249628-39249647 None:intergenic 20.0%
!!! ATATTGATGAAGTTTTGATT+GGG - chr4_1:39249659-39249678 None:intergenic 20.0%
!! TTATTGTTGTAGGTTAATTA+CGG + chr4_1:39250037-39250056 Msa0546840:three_prime_UTR 20.0%
!!! AGATTTGTTTTAATTGATGA+GGG + chr4_1:39250146-39250165 Msa0546840:three_prime_UTR 20.0%
!! TTTTGTAGTTAAGTGCTTTT+GGG - chr4_1:39246399-39246418 None:intergenic 25.0%
!! ATTTTGTAGTTAAGTGCTTT+TGG - chr4_1:39246400-39246419 None:intergenic 25.0%
!! ATTTTCCGATTATTTGTTTC+AGG + chr4_1:39246432-39246451 Msa0546840:intron 25.0%
! ACTCAAATTATCATATACCT+CGG - chr4_1:39246636-39246655 None:intergenic 25.0%
!!! TGTATTTTTCGGATAAAATG+CGG + chr4_1:39246824-39246843 Msa0546840:intron 25.0%
! ATAAGCTCAAATAAGCTAAA+TGG + chr4_1:39247066-39247085 Msa0546840:intron 25.0%
! GTACATTTCAAAAAGATACA+TGG - chr4_1:39247099-39247118 None:intergenic 25.0%
!!! TGGATTTTTTTAGAAATGTG+AGG + chr4_1:39247134-39247153 Msa0546840:intron 25.0%
!!! ATTTTTTTAGAAATGTGAGG+TGG + chr4_1:39247137-39247156 Msa0546840:intron 25.0%
!! TTTGAAGATTTTTGTGTACA+TGG + chr4_1:39247544-39247563 Msa0546840:intron 25.0%
!!! TGATGTTGATTTAAAACTGA+AGG + chr4_1:39247621-39247640 Msa0546840:intron 25.0%
! TTCCAATTATAAACATTCAC+CGG - chr4_1:39248126-39248145 None:intergenic 25.0%
! AAAAGCAATAGAAATAGAAG+TGG - chr4_1:39248168-39248187 None:intergenic 25.0%
! TCAAGATTTGTAACAAATTG+GGG - chr4_1:39248223-39248242 None:intergenic 25.0%
! CTCAAGATTTGTAACAAATT+GGG - chr4_1:39248224-39248243 None:intergenic 25.0%
! TCTCAAGATTTGTAACAAAT+TGG - chr4_1:39248225-39248244 None:intergenic 25.0%
! AAAAGATATAATTCCTCTGT+TGG + chr4_1:39248305-39248324 Msa0546840:three_prime_UTR 25.0%
! AAACAATAATCATAGCATAC+TGG - chr4_1:39249289-39249308 None:intergenic 25.0%
! CAGATTGTAAATTGTAATCA+TGG - chr4_1:39249324-39249343 None:intergenic 25.0%
! TTGATATTATTTGTGCTTAC+GGG - chr4_1:39249364-39249383 None:intergenic 25.0%
! GTTGATATTATTTGTGCTTA+CGG - chr4_1:39249365-39249384 None:intergenic 25.0%
!! TATCAAGTATCAACATTTTC+AGG + chr4_1:39249460-39249479 Msa0546840:intron 25.0%
!!! AAATGGATTTTCTTGAAAAC+TGG - chr4_1:39249611-39249630 None:intergenic 25.0%
! GATTGGGGAAAAAATAAAAA+GGG - chr4_1:39249643-39249662 None:intergenic 25.0%
! TGATTGGGGAAAAAATAAAA+AGG - chr4_1:39249644-39249663 None:intergenic 25.0%
!!! TATTGATGAAGTTTTGATTG+GGG - chr4_1:39249658-39249677 None:intergenic 25.0%
!!! GATATTGATGAAGTTTTGAT+TGG - chr4_1:39249660-39249679 None:intergenic 25.0%
!! TTTCCTTTTGTCTATGTATA+AGG + chr4_1:39249723-39249742 Msa0546840:intron 25.0%
!! AATCTAAAACTTAAACGGTA+AGG - chr4_1:39250016-39250035 None:intergenic 25.0%
!!! GAGATTTGTTTTAATTGATG+AGG + chr4_1:39250145-39250164 Msa0546840:three_prime_UTR 25.0%
TTGTGCCTGAAACAAATAAT+CGG - chr4_1:39246440-39246459 None:intergenic 30.0%
TCAAATTATCATATACCTCG+GGG - chr4_1:39246634-39246653 None:intergenic 30.0%
CTCAAATTATCATATACCTC+GGG - chr4_1:39246635-39246654 None:intergenic 30.0%
TTATATGTGTTGTCTCATAC+TGG + chr4_1:39246707-39246726 Msa0546840:intron 30.0%
TGACTTTGGATTTGCATAAA+TGG + chr4_1:39246770-39246789 Msa0546840:intron 30.0%
! ATAAGCTCTTTTACCAAACA+GGG - chr4_1:39246850-39246869 None:intergenic 30.0%
! AATAAGCTCTTTTACCAAAC+AGG - chr4_1:39246851-39246870 None:intergenic 30.0%
TGTACTTATAGAAACATGTG+TGG + chr4_1:39247114-39247133 Msa0546840:intron 30.0%
!!! AATGTTGTTTTGGATGAGTT+TGG + chr4_1:39247282-39247301 Msa0546840:CDS 30.0%
!!! TCTTTTTTTGTTTGAATCGG+TGG + chr4_1:39247578-39247597 Msa0546840:intron 30.0%
AGGAATTGATAAAACAGTAG+CGG + chr4_1:39247768-39247787 Msa0546840:CDS 30.0%
AAAGGTGGAGATGATATAAA+AGG + chr4_1:39247829-39247848 Msa0546840:CDS 30.0%
! GGAGATGATATAAAAGGTAT+TGG + chr4_1:39247835-39247854 Msa0546840:intron 30.0%
! ATTTGACATCTTTTCTTTCC+CGG + chr4_1:39248104-39248123 Msa0546840:intron 30.0%
TCCAATTATAAACATTCACC+GGG - chr4_1:39248125-39248144 None:intergenic 30.0%
AAGATTTGTAACAAATTGGG+GGG - chr4_1:39248221-39248240 None:intergenic 30.0%
CAAGATTTGTAACAAATTGG+GGG - chr4_1:39248222-39248241 None:intergenic 30.0%
! CTTTTATTGCGGAAATCTTT+TGG - chr4_1:39248290-39248309 None:intergenic 30.0%
AAACCTACATTGTACATGAT+TGG - chr4_1:39248575-39248594 None:intergenic 30.0%
! ATTTTGTGCATTTAACTGCT+AGG + chr4_1:39248780-39248799 Msa0546840:intron 30.0%
TTCAATTGAACAACTTGGTT+TGG + chr4_1:39248848-39248867 Msa0546840:three_prime_UTR 30.0%
TGATATTATTTGTGCTTACG+GGG - chr4_1:39249363-39249382 None:intergenic 30.0%
CAAACAAGGAAACAGAATAT+GGG - chr4_1:39249507-39249526 None:intergenic 30.0%
! CATATTCTGTTTCCTTGTTT+GGG + chr4_1:39249506-39249525 Msa0546840:intron 30.0%
ATGCCTTATACATAGACAAA+AGG - chr4_1:39249729-39249748 None:intergenic 30.0%
TTTGTCTATGTATAAGGCAT+TGG + chr4_1:39249729-39249748 Msa0546840:intron 30.0%
AGAAAATTAGAAGTGGTGAA+TGG + chr4_1:39249808-39249827 Msa0546840:three_prime_UTR 30.0%
GAAAATTAGAAGTGGTGAAT+GGG + chr4_1:39249809-39249828 Msa0546840:three_prime_UTR 30.0%
!! TTTTAATTGATGAGGGAGAA+GGG + chr4_1:39250153-39250172 Msa0546840:three_prime_UTR 30.0%
ATCAACAATTGGTGAAGAGT+AGG + chr4_1:39246144-39246163 Msa0546840:five_prime_UTR 35.0%
GAAAATGAATGAAGGGGAAA+TGG - chr4_1:39246365-39246384 None:intergenic 35.0%
! ACAGAAAGTTAACCGTTTTG+TGG + chr4_1:39246507-39246526 Msa0546840:CDS 35.0%
CACTTGCTTTAACCACAAAA+CGG - chr4_1:39246522-39246541 None:intergenic 35.0%
GAAAACATGGAATGTGACTT+TGG + chr4_1:39246756-39246775 Msa0546840:intron 35.0%
! TTGTTTGAATCGGTGGTTTT+TGG + chr4_1:39247585-39247604 Msa0546840:intron 35.0%
AGTAAAACTAATGACTCAGC+TGG + chr4_1:39247649-39247668 Msa0546840:CDS 35.0%
AATCCTGTGTCAATCAAGAA+AGG + chr4_1:39247748-39247767 Msa0546840:CDS 35.0%
ATTCCTTTCTTGATTGACAC+AGG - chr4_1:39247754-39247773 None:intergenic 35.0%
ATATCATCTCCACCTTTAAC+AGG - chr4_1:39247826-39247845 None:intergenic 35.0%
TAGCATGACATTACAACAAC+TGG - chr4_1:39247898-39247917 None:intergenic 35.0%
ACAATGATTGCTGAAGCAAT+TGG + chr4_1:39247981-39248000 Msa0546840:CDS 35.0%
TCTATGGATAAAACACCATC+AGG - chr4_1:39248017-39248036 None:intergenic 35.0%
TCCCGGTGAATGTTTATAAT+TGG + chr4_1:39248121-39248140 Msa0546840:intron 35.0%
! TATGACTTGTAGATTGACAG+AGG + chr4_1:39248187-39248206 Msa0546840:intron 35.0%
! ATGACTTGTAGATTGACAGA+GGG + chr4_1:39248188-39248207 Msa0546840:intron 35.0%
! TATTGCGGAAATCTTTTGGT+CGG - chr4_1:39248286-39248305 None:intergenic 35.0%
ATATTGCAATGTCTGAAGGA+GGG - chr4_1:39248478-39248497 None:intergenic 35.0%
AATATTGCAATGTCTGAAGG+AGG - chr4_1:39248479-39248498 None:intergenic 35.0%
GTCAATATTGCAATGTCTGA+AGG - chr4_1:39248482-39248501 None:intergenic 35.0%
TCAGACATTGCAATATTGAC+AGG + chr4_1:39248482-39248501 Msa0546840:three_prime_UTR 35.0%
TGTCCAATCATGTACAATGT+AGG + chr4_1:39248569-39248588 Msa0546840:intron 35.0%
! CAACTTTGTTTCCTTGTCAT+CGG - chr4_1:39248732-39248751 None:intergenic 35.0%
ATGACAAGGAAACAAAGTTG+TGG + chr4_1:39248732-39248751 Msa0546840:intron 35.0%
! TTGAAGTGCTTTCAACAAGA+AGG - chr4_1:39248833-39248852 None:intergenic 35.0%
AGCACTTCAATTGAACAACT+TGG + chr4_1:39248843-39248862 Msa0546840:three_prime_UTR 35.0%
AGATATTTAGCAATCCTCTC+GGG - chr4_1:39249010-39249029 None:intergenic 35.0%
CAGATATTTAGCAATCCTCT+CGG - chr4_1:39249011-39249030 None:intergenic 35.0%
AAGTTTACGATCCTCAAGTT+CGG - chr4_1:39249073-39249092 None:intergenic 35.0%
GGATCGTAAACTTAGAATTG+AGG + chr4_1:39249080-39249099 Msa0546840:three_prime_UTR 35.0%
!!! TCTAGTTTTTCCTTGATTGC+TGG - chr4_1:39249192-39249211 None:intergenic 35.0%
!! TCAACATTTTCAGGGTATTC+TGG + chr4_1:39249380-39249399 Msa0546840:intron 35.0%
TTCAAGCGTCATATAACTCA+TGG + chr4_1:39249423-39249442 Msa0546840:intron 35.0%
CCAAACAAGGAAACAGAATA+TGG - chr4_1:39249508-39249527 None:intergenic 35.0%
CCATATTCTGTTTCCTTGTT+TGG + chr4_1:39249505-39249524 Msa0546840:intron 35.0%
ACACTCATAATAGCACAACA+AGG - chr4_1:39249563-39249582 None:intergenic 35.0%
ATTTGAGCAATCAATGATGC+AGG - chr4_1:39249760-39249779 None:intergenic 35.0%
! ATCATTGATTGCTCAAATGC+TGG + chr4_1:39249762-39249781 Msa0546840:three_prime_UTR 35.0%
AATAGAAGGTGAAGTAGTTG+TGG + chr4_1:39249785-39249804 Msa0546840:three_prime_UTR 35.0%
GTTGTGGAGAAAATTAGAAG+TGG + chr4_1:39249801-39249820 Msa0546840:three_prime_UTR 35.0%
ATTCTCATAAGTGTCTGTCA+TGG - chr4_1:39249850-39249869 None:intergenic 35.0%
!!! GTTTTAATTGATGAGGGAGA+AGG + chr4_1:39250152-39250171 Msa0546840:three_prime_UTR 35.0%
GGAGAAGGGAATGATAAATT+TGG + chr4_1:39250167-39250186 Msa0546840:three_prime_UTR 35.0%
AACAATTGGTGAAGAGTAGG+AGG + chr4_1:39246147-39246166 Msa0546840:five_prime_UTR 40.0%
! AACGAAGTGAAGTGGGTTTA+GGG - chr4_1:39246223-39246242 None:intergenic 40.0%
GAAACTCAACGAAGTGAAGT+GGG - chr4_1:39246230-39246249 None:intergenic 40.0%
! GAAGAGTGTGGATAAGATGA+TGG - chr4_1:39246272-39246291 None:intergenic 40.0%
TATCCACACTCTTCCAAACA+TGG + chr4_1:39246278-39246297 Msa0546840:exon 40.0%
! GAAATGGTTAGTTACCTGGT+TGG - chr4_1:39246349-39246368 None:intergenic 40.0%
TGTAATTAACCCTCCCATGT+TGG - chr4_1:39246486-39246505 None:intergenic 40.0%
CTGATGCGTTAGTGAAAACA+TGG + chr4_1:39246743-39246762 Msa0546840:intron 40.0%
!! TGAAGGGAGGAATGTTGTTT+TGG + chr4_1:39247272-39247291 Msa0546840:intron 40.0%
AGTCCTAAGGTTGTAAACGA+TGG + chr4_1:39247306-39247325 Msa0546840:intron 40.0%
ACACCATCGTTTACAACCTT+AGG - chr4_1:39247312-39247331 None:intergenic 40.0%
TGATAAAACAGTAGCGGCTT+TGG + chr4_1:39247774-39247793 Msa0546840:CDS 40.0%
!! GCTGGAAATGATGAGTTGAT+TGG + chr4_1:39247957-39247976 Msa0546840:CDS 40.0%
TTCGGCAATGATAAGCAAAG+GGG - chr4_1:39248353-39248372 None:intergenic 40.0%
CTTCGGCAATGATAAGCAAA+GGG - chr4_1:39248354-39248373 None:intergenic 40.0%
TCTTCGGCAATGATAAGCAA+AGG - chr4_1:39248355-39248374 None:intergenic 40.0%
ATCATTGCCGAAGATATCAC+TGG + chr4_1:39248361-39248380 Msa0546840:three_prime_UTR 40.0%
TTCTTCTCTCACCAAATCCT+TGG - chr4_1:39248452-39248471 None:intergenic 40.0%
!! AGGATTTGGTGAGAGAAGAA+AGG + chr4_1:39248452-39248471 Msa0546840:three_prime_UTR 40.0%
!! TCATCGGTTCTTGTGTATCA+TGG - chr4_1:39248716-39248735 None:intergenic 40.0%
ATACACAAGAACCGATGACA+AGG + chr4_1:39248718-39248737 Msa0546840:intron 40.0%
ATAATGGTGGTAGGAATCCT+TGG - chr4_1:39248892-39248911 None:intergenic 40.0%
TGATGCAGCATCAGCAATAA+TGG - chr4_1:39248908-39248927 None:intergenic 40.0%
TATTGCTGATGCTGCATCAA+AGG + chr4_1:39248909-39248928 Msa0546840:three_prime_UTR 40.0%
TCAAAGGATGAGTTGCAATC+CGG + chr4_1:39248925-39248944 Msa0546840:three_prime_UTR 40.0%
CGAGAGGATTGCTAAATATC+TGG + chr4_1:39249009-39249028 Msa0546840:three_prime_UTR 40.0%
GAGGATTGCTAAATATCTGG+TGG + chr4_1:39249012-39249031 Msa0546840:three_prime_UTR 40.0%
TTGCTAAATATCTGGTGGAG+TGG + chr4_1:39249017-39249036 Msa0546840:three_prime_UTR 40.0%
AGGAACAATACCTTCCTCAA+TGG - chr4_1:39249130-39249149 None:intergenic 40.0%
!! ATTGAGGAAGGTATTGTTCC+TGG + chr4_1:39249129-39249148 Msa0546840:three_prime_UTR 40.0%
TGCTTATGTTCCAGCAATCA+AGG + chr4_1:39249179-39249198 Msa0546840:three_prime_UTR 40.0%
! TCTGTTTCCTTGTTTGGGTA+AGG + chr4_1:39249511-39249530 Msa0546840:intron 40.0%
! CTGTTTCCTTGTTTGGGTAA+GGG + chr4_1:39249512-39249531 Msa0546840:intron 40.0%
! TGTTTCCTTGTTTGGGTAAG+GGG + chr4_1:39249513-39249532 Msa0546840:intron 40.0%
TGCTCAAATGCTGGAATAGA+AGG + chr4_1:39249771-39249790 Msa0546840:three_prime_UTR 40.0%
! GCTAGGCTTTTCAACAACAA+TGG - chr4_1:39249962-39249981 None:intergenic 40.0%
CAGAAAAGTGAAAGAGCTTG+TGG + chr4_1:39250073-39250092 Msa0546840:three_prime_UTR 40.0%
! GTGAAAGAGCTTGTGGTTTT+CGG + chr4_1:39250080-39250099 Msa0546840:three_prime_UTR 40.0%
! GTGAAGTGGGTTTAGGGTTT+GGG - chr4_1:39246217-39246236 None:intergenic 45.0%
! AGTGAAGTGGGTTTAGGGTT+TGG - chr4_1:39246218-39246237 None:intergenic 45.0%
! CAACGAAGTGAAGTGGGTTT+AGG - chr4_1:39246224-39246243 None:intergenic 45.0%
CGAAACTCAACGAAGTGAAG+TGG - chr4_1:39246231-39246250 None:intergenic 45.0%
AAGCCATGTTTGGAAGAGTG+TGG - chr4_1:39246284-39246303 None:intergenic 45.0%
AGAACGGAGAATTGAGGTTG+AGG - chr4_1:39246322-39246341 None:intergenic 45.0%
!! TTACCTGGTTGGTAGGAGAA+CGG - chr4_1:39246338-39246357 None:intergenic 45.0%
! TGGTTAGTTACCTGGTTGGT+AGG - chr4_1:39246345-39246364 None:intergenic 45.0%
! AGGGGAAATGGTTAGTTACC+TGG - chr4_1:39246353-39246372 None:intergenic 45.0%
ACAAACGAGTCTTAGCAGGA+AGG + chr4_1:39246456-39246475 Msa0546840:CDS 45.0%
GATAAACTTGCCGATGCTGT+TGG + chr4_1:39246595-39246614 Msa0546840:intron 45.0%
! CCAGCATTTTCCATAGCATC+AGG - chr4_1:39247460-39247479 None:intergenic 45.0%
CCTGATGCTATGGAAAATGC+TGG + chr4_1:39247457-39247476 Msa0546840:intron 45.0%
! ATGCTGGTGCAGCTCTAATT+AGG + chr4_1:39247473-39247492 Msa0546840:intron 45.0%
! TGCTGGTGCAGCTCTAATTA+GGG + chr4_1:39247474-39247493 Msa0546840:intron 45.0%
ACTAATGACTCAGCTGGAGA+TGG + chr4_1:39247655-39247674 Msa0546840:CDS 45.0%
CTAATGACTCAGCTGGAGAT+GGG + chr4_1:39247656-39247675 Msa0546840:CDS 45.0%
! GACTACAACGGCTTCGATTT+TGG + chr4_1:39247678-39247697 Msa0546840:CDS 45.0%
GCTCGGGAAATCATTAAGCT+TGG + chr4_1:39247700-39247719 Msa0546840:CDS 45.0%
! TAAAACAGTAGCGGCTTTGG+TGG + chr4_1:39247777-39247796 Msa0546840:CDS 45.0%
AAGAGCTTGAGAAGTTGGCT+AGG + chr4_1:39247800-39247819 Msa0546840:CDS 45.0%
AAGTTGGCTAGGCCTGTTAA+AGG + chr4_1:39247811-39247830 Msa0546840:CDS 45.0%
!! GCTGTTGCTTCTATTTCTGC+TGG + chr4_1:39247939-39247958 Msa0546840:intron 45.0%
GATTGCTGAAGCAATTGGCA+AGG + chr4_1:39247986-39248005 Msa0546840:CDS 45.0%
AAACGAGGAGGAAGACTCTA+TGG - chr4_1:39248033-39248052 None:intergenic 45.0%
CATTCCTTCTTCGACTTCGA+CGG - chr4_1:39248063-39248082 None:intergenic 45.0%
! TGGAGGTATGAACTCTTTGC+TGG + chr4_1:39248081-39248100 Msa0546840:intron 45.0%
! GAGTGGTTTTTCTCCAACAG+AGG - chr4_1:39248321-39248340 None:intergenic 45.0%
AGCCTCACCAGTGATATCTT+CGG - chr4_1:39248371-39248390 None:intergenic 45.0%
AGATATCACTGGTGAGGCTT+TGG + chr4_1:39248372-39248391 Msa0546840:three_prime_UTR 45.0%
AGCTGCTGGTATCCTTAATG+TGG + chr4_1:39248412-39248431 Msa0546840:three_prime_UTR 45.0%
! CTTTGATGGCAGCCACATTA+AGG - chr4_1:39248427-39248446 None:intergenic 45.0%
! CCAAATCCTTGGAGCTTTGA+TGG - chr4_1:39248441-39248460 None:intergenic 45.0%
CCATCAAAGCTCCAAGGATT+TGG + chr4_1:39248438-39248457 Msa0546840:three_prime_UTR 45.0%
AACAAGAAGGCCCAAATCAC+TGG - chr4_1:39248820-39248839 None:intergenic 45.0%
TCGAAAAGTGACCATCTCCA+AGG + chr4_1:39248872-39248891 Msa0546840:three_prime_UTR 45.0%
GCATCAGCAATAATGGTGGT+AGG - chr4_1:39248901-39248920 None:intergenic 45.0%
TGCAGCATCAGCAATAATGG+TGG - chr4_1:39248905-39248924 None:intergenic 45.0%
CAAAGGATGAGTTGCAATCC+GGG + chr4_1:39248926-39248945 Msa0546840:three_prime_UTR 45.0%
CTTTCTTCAGTTGTGCAACC+CGG - chr4_1:39248947-39248966 None:intergenic 45.0%
GGCAGCAAAAGTTGCATTCT+TGG - chr4_1:39249109-39249128 None:intergenic 45.0%
! TGCAACTTTTGCTGCCATTG+AGG + chr4_1:39249113-39249132 Msa0546840:three_prime_UTR 45.0%
! ACTTTTGCTGCCATTGAGGA+AGG + chr4_1:39249117-39249136 Msa0546840:three_prime_UTR 45.0%
AACTAGAAGACGCAGATGAG+AGG + chr4_1:39249205-39249224 Msa0546840:three_prime_UTR 45.0%
AGGAGCTGACATCGTTCAAA+AGG + chr4_1:39249230-39249249 Msa0546840:three_prime_UTR 45.0%
TAGAAGTGGTGAATGGGAGT+TGG + chr4_1:39249815-39249834 Msa0546840:three_prime_UTR 45.0%
TTCAACAACAATGGCCTGTG+TGG - chr4_1:39249953-39249972 None:intergenic 45.0%
TTGTTGAAAAGCCTAGCCCA+GGG + chr4_1:39249965-39249984 Msa0546840:three_prime_UTR 45.0%
! TTAAACGGTAAGGCCTTGTG+GGG - chr4_1:39250006-39250025 None:intergenic 45.0%
! CTTAAACGGTAAGGCCTTGT+GGG - chr4_1:39250007-39250026 None:intergenic 45.0%
ACTTAAACGGTAAGGCCTTG+TGG - chr4_1:39250008-39250027 None:intergenic 45.0%
!! TTTATTTATTTATATAAAGA+GGG - chr4_1:39247172-39247191 None:intergenic 5.0%
!! ATTTATTTATTTATATAAAG+AGG - chr4_1:39247173-39247192 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTGAA+GGG + chr4_1:39247256-39247275 Msa0546840:intron 5.0%
!! GCGTTGGTTGAAGCCATGTT+TGG - chr4_1:39246294-39246313 None:intergenic 50.0%
TGAGGTTGAGGATAGAGCGT+TGG - chr4_1:39246310-39246329 None:intergenic 50.0%
GGTAGGAGAACGGAGAATTG+AGG - chr4_1:39246328-39246347 None:intergenic 50.0%
AGGCACAAACGAGTCTTAGC+AGG + chr4_1:39246452-39246471 Msa0546840:intron 50.0%
ACGGCGTGAATCTTGGTCAA+AGG - chr4_1:39246557-39246576 None:intergenic 50.0%
CAATTCCAGCCTGCATAGCA+CGG - chr4_1:39246576-39246595 None:intergenic 50.0%
GAGAGTAAGGCCAACAGCAT+CGG - chr4_1:39246608-39246627 None:intergenic 50.0%
!! GATGCTGTTGGCCTTACTCT+CGG + chr4_1:39246607-39246626 Msa0546840:intron 50.0%
GGATAAAATGCGGCCCTGTT+TGG + chr4_1:39246834-39246853 Msa0546840:intron 50.0%
GGATGAGTTTGGCAGTCCTA+AGG + chr4_1:39247293-39247312 Msa0546840:CDS 50.0%
! TGGTGCAGCTCTAATTAGGG+AGG + chr4_1:39247477-39247496 Msa0546840:intron 50.0%
AGCTGGAGATGGGACTACAA+CGG + chr4_1:39247666-39247685 Msa0546840:CDS 50.0%
!!! CAACGGCTTCGATTTTGGCT+CGG + chr4_1:39247683-39247702 Msa0546840:CDS 50.0%
!!! AACGGCTTCGATTTTGGCTC+GGG + chr4_1:39247684-39247703 Msa0546840:CDS 50.0%
GGACTTCTCAGTGTGACATC+AGG + chr4_1:39247721-39247740 Msa0546840:CDS 50.0%
GGTGGAAGAGCTTGAGAAGT+TGG + chr4_1:39247795-39247814 Msa0546840:CDS 50.0%
TTGGCTAGGCCTGTTAAAGG+TGG + chr4_1:39247814-39247833 Msa0546840:CDS 50.0%
GCTGAAGCAATTGGCAAGGT+TGG + chr4_1:39247990-39248009 Msa0546840:CDS 50.0%
ATTGGCAAGGTTGGACCTGA+TGG + chr4_1:39247999-39248018 Msa0546840:CDS 50.0%
TTCGACGGTTGTCTCAAACG+AGG - chr4_1:39248048-39248067 None:intergenic 50.0%
ACAACCGTCGAAGTCGAAGA+AGG + chr4_1:39248056-39248075 Msa0546840:CDS 50.0%
CGTCGAAGTCGAAGAAGGAA+TGG + chr4_1:39248061-39248080 Msa0546840:CDS 50.0%
CGAAGTCGAAGAAGGAATGG+AGG + chr4_1:39248064-39248083 Msa0546840:CDS 50.0%
CAAAGGGGCTCTCAATTGAG+TGG - chr4_1:39248338-39248357 None:intergenic 50.0%
TGCCGAAGATATCACTGGTG+AGG + chr4_1:39248366-39248385 Msa0546840:three_prime_UTR 50.0%
CCAGCAGCTTGTCACAACAA+GGG - chr4_1:39248401-39248420 None:intergenic 50.0%
ACCAGCAGCTTGTCACAACA+AGG - chr4_1:39248402-39248421 None:intergenic 50.0%
TGAGTTCCAGGCCAGTGATT+TGG + chr4_1:39248806-39248825 Msa0546840:three_prime_UTR 50.0%
GAGTTCCAGGCCAGTGATTT+GGG + chr4_1:39248807-39248826 Msa0546840:three_prime_UTR 50.0%
GTGGTAGGAATCCTTGGAGA+TGG - chr4_1:39248886-39248905 None:intergenic 50.0%
GAGACGACTCAGTTTCGACT+CGG + chr4_1:39248975-39248994 Msa0546840:three_prime_UTR 50.0%
!! CAGTTTCGACTCGGAGAAAC+TGG + chr4_1:39248984-39249003 Msa0546840:three_prime_UTR 50.0%
TGCTACAGAGACCGAACTTG+AGG + chr4_1:39249059-39249078 Msa0546840:three_prime_UTR 50.0%
!! GAGGAAGGTATTGTTCCTGG+CGG + chr4_1:39249132-39249151 Msa0546840:three_prime_UTR 50.0%
CCTTTCCCCTTACCCAAACA+AGG - chr4_1:39249521-39249540 None:intergenic 50.0%
! CCTTGTTTGGGTAAGGGGAA+AGG + chr4_1:39249518-39249537 Msa0546840:intron 50.0%
GTTGTTGAAAAGCCTAGCCC+AGG + chr4_1:39249964-39249983 Msa0546840:three_prime_UTR 50.0%
TCTCCGTTCTCCTACCAACC+AGG + chr4_1:39246332-39246351 Msa0546840:CDS 55.0%
AGCAGGAAGGCGAACCAACA+TGG + chr4_1:39246469-39246488 Msa0546840:CDS 55.0%
GCAGGAAGGCGAACCAACAT+GGG + chr4_1:39246470-39246489 Msa0546840:CDS 55.0%
GAAGGCGAACCAACATGGGA+GGG + chr4_1:39246474-39246493 Msa0546840:CDS 55.0%
GCATAGCACGGCGTGAATCT+TGG - chr4_1:39246564-39246583 None:intergenic 55.0%
AGATTCACGCCGTGCTATGC+AGG + chr4_1:39246564-39246583 Msa0546840:intron 55.0%
GACGGTTGTCTCAAACGAGG+AGG - chr4_1:39248045-39248064 None:intergenic 55.0%
! CCCTTGTTGTGACAAGCTGC+TGG + chr4_1:39248398-39248417 Msa0546840:three_prime_UTR 55.0%
TGGCTGCCATCAAAGCTCCA+AGG + chr4_1:39248432-39248451 Msa0546840:three_prime_UTR 55.0%
!! ACTGCTAGGTGCTGAGTTCC+AGG + chr4_1:39248794-39248813 Msa0546840:intron 55.0%
TGGTGGAGTGGCAGTCATCA+AGG + chr4_1:39249029-39249048 Msa0546840:three_prime_UTR 55.0%
GGAGTGGCAGTCATCAAGGT+CGG + chr4_1:39249033-39249052 Msa0546840:three_prime_UTR 55.0%
!! GAAGGTATTGTTCCTGGCGG+AGG + chr4_1:39249135-39249154 Msa0546840:three_prime_UTR 55.0%
GAAGACGCAGATGAGAGGCT+AGG + chr4_1:39249210-39249229 Msa0546840:three_prime_UTR 55.0%
TCTGAGTCATCGACCTGCGA+AGG + chr4_1:39249879-39249898 Msa0546840:three_prime_UTR 55.0%
! TCATCGACCTGCGAAGGTAC+AGG + chr4_1:39249885-39249904 Msa0546840:three_prime_UTR 55.0%
! CTCTGCAGATGCTGCTTCAG+TGG + chr4_1:39249912-39249931 Msa0546840:three_prime_UTR 55.0%
! CAGATGCTGCTTCAGTGGCT+GGG + chr4_1:39249917-39249936 Msa0546840:three_prime_UTR 55.0%
! TGGGATGGTCTTGACCACAC+AGG + chr4_1:39249936-39249955 Msa0546840:three_prime_UTR 55.0%
GGAAGGCGAACCAACATGGG+AGG + chr4_1:39246473-39246492 Msa0546840:CDS 60.0%
TACCTCGGGGTCCGAGAGTA+AGG - chr4_1:39246621-39246640 None:intergenic 60.0%
GAAGGCCCAAATCACTGGCC+TGG - chr4_1:39248815-39248834 None:intergenic 60.0%
! TCCTGGCGGAGGTACAGCAT+TGG + chr4_1:39249146-39249165 Msa0546840:three_prime_UTR 60.0%
ACCAATGCTGTACCTCCGCC+AGG - chr4_1:39249150-39249169 None:intergenic 60.0%
GAGCACACCTGTACCTTCGC+AGG - chr4_1:39249895-39249914 None:intergenic 60.0%
! GCAGATGCTGCTTCAGTGGC+TGG + chr4_1:39249916-39249935 Msa0546840:three_prime_UTR 60.0%
! TGCTGCTTCAGTGGCTGGGA+TGG + chr4_1:39249921-39249940 Msa0546840:three_prime_UTR 60.0%
TCACGCCGTGCTATGCAGGC+TGG + chr4_1:39246568-39246587 Msa0546840:intron 65.0%
CTCGGAGAAACTGGCCCGAG+AGG + chr4_1:39248993-39249012 Msa0546840:three_prime_UTR 65.0%
GGCCTTACTCTCGGACCCCG+AGG + chr4_1:39246616-39246635 Msa0546840:intron 70.0%
AGCCTAGCCCAGGGCAGCTG+TGG + chr4_1:39249974-39249993 Msa0546840:three_prime_UTR 70.0%
AGCCACAGCTGCCCTGGGCT+AGG - chr4_1:39249979-39249998 None:intergenic 70.0%
GCAGCAGCCACAGCTGCCCT+GGG - chr4_1:39249984-39250003 None:intergenic 70.0%
GCTGTGGCTGCTGCCCCACA+AGG + chr4_1:39249990-39250009 Msa0546840:three_prime_UTR 70.0%
GGCAGCAGCCACAGCTGCCC+TGG - chr4_1:39249985-39250004 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 39246135 39250256 39246135 ID=Msa0546840;Name=Msa0546840
chr4_1 mRNA 39246135 39250256 39246135 ID=Msa0546840-mRNA-1;Parent=Msa0546840;Name=Msa0546840-mRNA-1;_AED=0.10;_eAED=0.10;_QI=162|0.71|0.75|1|0.57|0.75|8|1186|216
chr4_1 exon 39246135 39246353 39246135 ID=Msa0546840-mRNA-1:exon:9980;Parent=Msa0546840-mRNA-1
chr4_1 exon 39246454 39246574 39246454 ID=Msa0546840-mRNA-1:exon:9981;Parent=Msa0546840-mRNA-1
chr4_1 exon 39247277 39247314 39247277 ID=Msa0546840-mRNA-1:exon:9982;Parent=Msa0546840-mRNA-1
chr4_1 exon 39247643 39247850 39247643 ID=Msa0546840-mRNA-1:exon:9983;Parent=Msa0546840-mRNA-1
chr4_1 exon 39247940 39248085 39247940 ID=Msa0546840-mRNA-1:exon:9984;Parent=Msa0546840-mRNA-1
chr4_1 exon 39248199 39248503 39248199 ID=Msa0546840-mRNA-1:exon:9985;Parent=Msa0546840-mRNA-1
chr4_1 exon 39248802 39249251 39248802 ID=Msa0546840-mRNA-1:exon:9986;Parent=Msa0546840-mRNA-1
chr4_1 exon 39249745 39250256 39249745 ID=Msa0546840-mRNA-1:exon:9987;Parent=Msa0546840-mRNA-1
chr4_1 five_prime_UTR 39246135 39246296 39246135 ID=Msa0546840-mRNA-1:five_prime_utr;Parent=Msa0546840-mRNA-1
chr4_1 CDS 39246297 39246353 39246297 ID=Msa0546840-mRNA-1:cds;Parent=Msa0546840-mRNA-1
chr4_1 CDS 39246454 39246574 39246454 ID=Msa0546840-mRNA-1:cds;Parent=Msa0546840-mRNA-1
chr4_1 CDS 39247277 39247314 39247277 ID=Msa0546840-mRNA-1:cds;Parent=Msa0546840-mRNA-1
chr4_1 CDS 39247643 39247850 39247643 ID=Msa0546840-mRNA-1:cds;Parent=Msa0546840-mRNA-1
chr4_1 CDS 39247940 39248085 39247940 ID=Msa0546840-mRNA-1:cds;Parent=Msa0546840-mRNA-1
chr4_1 CDS 39248199 39248279 39248199 ID=Msa0546840-mRNA-1:cds;Parent=Msa0546840-mRNA-1
chr4_1 three_prime_UTR 39248280 39248503 39248280 ID=Msa0546840-mRNA-1:three_prime_utr;Parent=Msa0546840-mRNA-1
chr4_1 three_prime_UTR 39248802 39249251 39248802 ID=Msa0546840-mRNA-1:three_prime_utr;Parent=Msa0546840-mRNA-1
chr4_1 three_prime_UTR 39249745 39250256 39249745 ID=Msa0546840-mRNA-1:three_prime_utr;Parent=Msa0546840-mRNA-1
Gene Sequence

>Msa0546840

ATGGCTTCAACCAACGCTCTATCCTCAACCTCAATTCTCCGTTCTCCTACCAACCAGGCACAAACGAGTCTTAGCAGGAAGGCGAACCAACATGGGAGGGTTAATTACAGACAGAAAGTTAACCGTTTTGTGGTTAAAGCAAGTGCTAAAGATATTGCCTTTGACCAAGATTCACGCCGGAGGAATGTTGTTTTGGATGAGTTTGGCAGTCCTAAGGTTGCTAGTAAAACTAATGACTCAGCTGGAGATGGGACTACAACGGCTTCGATTTTGGCTCGGGAAATCATTAAGCTTGGACTTCTCAGTGTGACATCAGGTGCTAATCCTGTGTCAATCAAGAAAGGAATTGATAAAACAGTAGCGGCTTTGGTGGAAGAGCTTGAGAAGTTGGCTAGGCCTGTTAAAGGTGGAGATGATATAAAAGCTGTTGCTTCTATTTCTGCTGGAAATGATGAGTTGATTGGAACAATGATTGCTGAAGCAATTGGCAAGGTTGGACCTGATGGTGTTTTATCCATAGAGTCTTCCTCCTCGTTTGAGACAACCGTCGAAGTCGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCCCCCCAATTTGTTACAAATCTTGAGAAATCAATTGTTGATTTGAGAATGCAAGAGTCTTGA
Protein sequence

>Msa0546840

MASTNALSSTSILRSPTNQAQTSLSRKANQHGRVNYRQKVNRFVVKASAKDIAFDQDSRRRNVVLDEFGSPKVASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIDKTVAALVEELEKLARPVKGGDDIKAVASISAGNDELIGTMIAEAIGKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNLEKSIVDLRMQES*