AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1239830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239830 MtrunA17_Chr8g0351701 96.567 233 6 2 1 232 1 232 3.80e-165 455
Msa1239830 MtrunA17_Chr7g0245871 54.872 195 82 2 24 212 27 221 9.90e-69 211
Msa1239830 MtrunA17_Chr8g0351721 51.887 212 81 5 12 213 4 204 2.29e-64 199
Msa1239830 MtrunA17_Chr7g0260971 67.544 114 37 0 13 126 3 116 1.08e-51 167
Msa1239830 MtrunA17_Chr7g0261031 52.903 155 64 2 19 173 3 148 1.24e-51 167
Msa1239830 MtrunA17_Chr1g0184271 70.874 103 30 0 24 126 12 114 1.60e-51 167
Msa1239830 MtrunA17_Chr7g0245861 73.737 99 23 3 15 111 4 101 1.99e-46 150
Msa1239830 MtrunA17_Chr6g0460951 56.522 138 53 1 24 154 40 177 2.36e-46 153
Msa1239830 MtrunA17_Chr1g0184281 72.632 95 26 0 24 118 15 109 8.71e-46 151
Msa1239830 MtrunA17_Chr5g0435641 59.821 112 45 0 19 130 2 113 3.74e-44 147
Msa1239830 MtrunA17_Chr4g0058651 53.030 132 57 2 23 150 10 140 4.34e-40 136
Msa1239830 MtrunA17_Chr4g0043421 53.333 120 55 1 13 132 4 122 1.40e-39 134
Msa1239830 MtrunA17_Chr7g0227511 57.522 113 43 2 24 132 11 122 7.68e-39 132
Msa1239830 MtrunA17_Chr2g0311601 51.695 118 56 1 15 132 4 120 3.59e-38 130
Msa1239830 MtrunA17_Chr5g0437571 52.800 125 53 3 16 139 2 121 3.80e-37 128
Msa1239830 MtrunA17_Chr3g0117121 58.095 105 43 1 24 128 10 113 6.57e-37 128
Msa1239830 MtrunA17_Chr3g0114061 42.857 161 78 4 16 176 2 148 4.57e-36 125
Msa1239830 MtrunA17_Chr5g0438091 47.586 145 71 3 14 158 29 168 4.76e-36 126
Msa1239830 MtrunA17_Chr3g0106101 48.438 128 61 2 15 142 2 124 6.57e-36 125
Msa1239830 MtrunA17_Chr5g0437401 55.882 102 44 1 25 126 12 112 5.84e-35 122
Msa1239830 MtrunA17_Chr3g0115431 55.172 116 51 1 23 138 8 122 9.72e-35 123
Msa1239830 MtrunA17_Chr6g0449641 56.863 102 43 1 24 125 9 109 2.02e-34 120
Msa1239830 MtrunA17_Chr5g0402611 55.172 116 47 2 19 132 3 115 2.27e-34 125
Msa1239830 MtrunA17_Chr3g0129071 52.586 116 54 1 17 132 40 154 4.33e-34 122
Msa1239830 MtrunA17_Chr3g0113891 56.842 95 40 1 25 119 15 108 6.21e-33 117
Msa1239830 MtrunA17_Chr3g0097221 51.786 112 53 1 19 130 2 112 3.21e-32 119
Msa1239830 MtrunA17_Chr6g0449651 53.333 105 48 1 24 128 67 170 9.71e-32 115
Msa1239830 MtrunA17_Chr6g0460941 59.091 88 36 0 24 111 7 94 4.63e-31 110
Msa1239830 MtrunA17_Chr4g0030001 47.748 111 56 2 23 132 23 132 4.57e-29 107
Msa1239830 MtrunA17_Chr8g0353981 61.728 81 30 1 24 104 7 86 1.29e-28 107
Msa1239830 MtrunA17_Chr5g0432451 55.263 114 50 1 16 129 35 147 4.71e-28 106
Msa1239830 MtrunA17_Chr1g0200201 47.222 108 56 1 25 132 73 179 8.41e-28 105
Msa1239830 MtrunA17_Chr5g0444351 43.519 108 60 1 23 130 4 110 1.60e-25 97.4
Msa1239830 MtrunA17_Chr7g0225111 41.509 106 61 1 25 130 6 110 2.33e-24 93.6
Msa1239830 MtrunA17_Chr8g0374601 43.119 109 61 1 24 132 26 133 2.80e-23 95.1
Msa1239830 MtrunA17_Chr8g0374591 43.119 109 61 1 24 132 8 115 5.73e-22 87.8
Msa1239830 MtrunA17_Chr4g0059901 41.414 99 57 1 20 118 6 103 1.70e-19 84.3
Msa1239830 MtrunA17_Chr8g0342351 38.095 105 64 1 25 129 13 116 3.86e-19 83.6
Msa1239830 MtrunA17_Chr4g0040831 31.928 166 96 4 17 166 8 172 8.26e-19 81.3
Msa1239830 MtrunA17_Chr8g0374581 38.182 110 66 2 24 132 8 116 6.59e-18 79.3
Msa1239830 MtrunA17_Chr2g0330201 40.404 99 58 1 20 118 15 112 1.18e-17 80.1
Msa1239830 MtrunA17_Chr6g0452691 39.806 103 60 2 25 126 10 111 3.75e-16 73.9
Msa1239830 MtrunA17_Chr6g0452671 36.735 98 61 1 25 122 12 108 1.47e-15 72.8
Msa1239830 MtrunA17_Chr4g0055441 35.922 103 64 2 25 126 3 104 1.59e-15 71.6
Msa1239830 MtrunA17_Chr6g0452661 33.981 103 66 2 25 126 10 111 8.69e-14 68.6
Msa1239830 MtrunA17_Chr2g0326041 52.941 51 23 1 23 73 32 81 2.46e-12 61.2
Msa1239830 MtrunA17_Chr2g0326051 44.444 63 35 0 70 132 5 67 6.23e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1239830 AT4G00220.1 62.105 190 63 2 27 211 20 205 1.73e-76 231
Msa1239830 AT2G45420.1 57.534 219 73 5 27 226 40 257 5.24e-73 223
Msa1239830 AT4G00210.1 50.242 207 93 4 16 213 3 208 2.96e-60 189
Msa1239830 AT2G42430.1 65.254 118 41 0 13 130 4 121 1.77e-52 170
Msa1239830 AT3G03760.1 71.963 107 30 0 24 130 51 157 2.13e-51 168
Msa1239830 AT2G45410.1 64.655 116 36 1 27 137 19 134 2.48e-51 165
Msa1239830 AT3G58190.1 48.588 177 79 3 24 198 11 177 5.10e-50 163
Msa1239830 AT2G42440.1 64.423 104 37 0 19 122 2 105 3.95e-47 156
Msa1239830 AT5G06080.1 49.640 139 66 1 25 159 8 146 1.01e-44 148
Msa1239830 AT2G31310.1 61.062 113 43 1 20 132 3 114 2.17e-44 147
Msa1239830 AT5G63090.4 48.066 181 84 6 24 203 11 182 1.91e-39 135
Msa1239830 AT5G63090.3 48.066 181 84 6 24 203 11 182 1.91e-39 135
Msa1239830 AT5G63090.2 48.066 181 84 6 24 203 11 182 1.91e-39 135
Msa1239830 AT5G63090.1 48.066 181 84 6 24 203 11 182 1.91e-39 135
Msa1239830 AT3G27650.1 57.143 105 44 1 24 128 39 142 1.26e-36 127
Msa1239830 AT2G30130.1 52.459 122 53 2 14 135 2 118 6.46e-36 126
Msa1239830 AT1G31320.1 57.609 92 38 1 20 111 9 99 1.88e-33 119
Msa1239830 AT5G66870.1 50.000 138 67 2 19 156 2 137 2.76e-33 122
Msa1239830 AT3G11090.1 42.581 155 76 4 25 171 12 161 3.93e-32 115
Msa1239830 AT1G07900.1 48.598 107 54 1 23 129 32 137 1.13e-30 112
Msa1239830 AT2G23660.2 47.458 118 61 1 21 138 2 118 1.23e-30 115
Msa1239830 AT2G23660.3 47.458 118 61 1 21 138 2 118 1.23e-30 115
Msa1239830 AT2G23660.1 47.458 118 61 1 21 138 2 118 1.23e-30 115
Msa1239830 AT1G16530.1 42.222 135 74 3 15 146 5 138 1.83e-30 111
Msa1239830 AT2G28500.1 51.456 103 49 1 24 126 55 156 2.60e-30 112
Msa1239830 AT2G30340.1 45.833 120 64 1 16 135 44 162 6.49e-29 110
Msa1239830 AT2G30340.2 45.833 120 64 1 16 135 45 163 7.52e-29 109
Msa1239830 AT1G65620.1 56.604 106 45 1 24 129 9 113 1.11e-28 107
Msa1239830 AT1G65620.4 56.604 106 45 1 24 129 9 113 1.11e-28 107
Msa1239830 AT1G65620.3 56.604 106 45 1 24 129 9 113 1.11e-28 107
Msa1239830 AT1G65620.5 56.604 106 45 1 24 129 9 113 1.11e-28 107
Msa1239830 AT1G65620.2 56.604 106 45 1 24 129 9 113 1.11e-28 107
Msa1239830 AT3G26660.1 45.631 103 55 1 25 127 6 107 1.95e-28 104
Msa1239830 AT3G26620.1 45.631 103 55 1 25 127 6 107 3.75e-28 103
Msa1239830 AT2G40470.2 52.137 117 55 1 13 129 9 124 2.60e-27 103
Msa1239830 AT2G40470.1 52.137 117 55 1 13 129 34 149 3.57e-27 104
Msa1239830 AT3G50510.1 38.686 137 82 2 24 160 12 146 3.07e-26 101
Msa1239830 AT3G50510.2 38.686 137 82 2 24 160 12 146 3.07e-26 101
Msa1239830 AT5G35900.1 31.351 185 117 4 25 200 6 189 1.91e-20 86.3
Msa1239830 AT3G13850.1 38.462 104 63 1 25 128 37 139 1.04e-18 82.8
Msa1239830 AT1G72980.1 33.871 124 80 2 20 142 9 131 3.89e-16 74.7
Msa1239830 AT3G47870.1 35.398 113 69 2 16 128 31 139 4.65e-16 76.3
Msa1239830 AT4G22700.1 30.065 153 101 4 21 172 2 149 4.20e-14 68.9
Msa1239830 AT1G06280.1 42.667 75 42 1 25 99 25 98 6.94e-14 68.6

Find 71 sgRNAs with CRISPR-Local

Find 406 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGAGCCCCGCCAATATT+TGG 0.160749 8_2:-21858598 Msa1239830:CDS
TAGATCAAAGATTGTTCATT+TGG 0.270427 8_2:+21858449 None:intergenic
CAAATATTGGCGGGGCTCAT+TGG 0.328917 8_2:+21858599 None:intergenic
ACATCATCCACTAGCAATAA+TGG 0.352137 8_2:-21858567 Msa1239830:CDS
GGTGGAGGTGTTGGTGGTTG+AGG 0.362273 8_2:+21858750 None:intergenic
ATGGCTGAAGAAGGGGCTAA+TGG 0.363007 8_2:+21858693 None:intergenic
GCATGACCCATGATGAAGTT+TGG 0.364374 8_2:+21858631 None:intergenic
GAAGACAAGTCATATGTATC+TGG 0.372604 8_2:+21858669 None:intergenic
CATGACCCATGATGAAGTTT+GGG 0.376247 8_2:+21858632 None:intergenic
AATGAGCCCCGCCAATATTT+GGG 0.384284 8_2:-21858597 Msa1239830:CDS
AGGTTGAGAGATCCCGTCTT+TGG 0.394288 8_2:-21863400 Msa1239830:CDS
AGTGCTTGTGGTGGAGGTGT+TGG 0.400398 8_2:+21858741 None:intergenic
AAATATTGGCGGGGCTCATT+GGG 0.412129 8_2:+21858600 None:intergenic
TATCTTTACTCTTCAGCAAC+AGG 0.415923 8_2:-21863365 Msa1239830:intron
TGGCTGAAGAAGGGGCTAAT+GGG 0.433908 8_2:+21858694 None:intergenic
ATGTGCCACTACCCAAATAT+TGG 0.434191 8_2:+21858586 None:intergenic
TTTGAGAAGGAAGTGTATCC+CGG 0.449160 8_2:-21863584 Msa1239830:CDS
CCTTACTTCGATTCGGAGCA+AGG 0.451165 8_2:-21863547 Msa1239830:CDS
TGCTTGAGCTTCATAACAAA+TGG 0.458370 8_2:+21863423 None:intergenic
ATTGGAAGTGCTTGTGGTGG+AGG 0.458768 8_2:+21858735 None:intergenic
GCAACCACTACCGCTACAAC+CGG 0.465462 8_2:+21863660 None:intergenic
AAAGTTGCTACAAAATGTTC+CGG 0.465613 8_2:-21863473 Msa1239830:CDS
GCTTGTGGTGGAGGTGTTGG+TGG 0.478286 8_2:+21858744 None:intergenic
TTGGAAAGAGAATGAGATGA+TGG 0.479844 8_2:+21858468 None:intergenic
CCTTGCTCCGAATCGAAGTA+AGG 0.493406 8_2:+21863547 None:intergenic
GTATCTGGCATGGCTGAAGA+AGG 0.503262 8_2:+21858684 None:intergenic
GCCACTACCCAAATATTGGC+GGG 0.507847 8_2:+21858590 None:intergenic
CCCCGCCAATATTTGGGTAG+TGG 0.517665 8_2:-21858591 Msa1239830:CDS
AACTCCGGTTGTAGCGGTAG+TGG 0.518960 8_2:-21863664 Msa1239830:CDS
TGGAAAGAGAATGAGATGAT+GGG 0.519184 8_2:+21858469 None:intergenic
AGTGGTTGCAGTGGTGGTGG+TGG 0.524928 8_2:-21863646 Msa1239830:CDS
AAGTACCCCAAACTTCATCA+TGG 0.535257 8_2:-21858638 Msa1239830:CDS
GGTAGTGGTTGCAGTGGTGG+TGG 0.549172 8_2:-21863649 Msa1239830:CDS
ATCACCACCATTATTGCTAG+TGG 0.552303 8_2:+21858560 None:intergenic
GAGGTACTTCATATGTAGCT+AGG 0.553041 8_2:+21858769 None:intergenic
GCATCAAGACGCTTGTGTAC+CGG 0.555181 8_2:+21863454 None:intergenic
TATCTGGCATGGCTGAAGAA+GGG 0.557341 8_2:+21858685 None:intergenic
ATGAGCAACACAACCAAAGA+CGG 0.560188 8_2:+21863387 None:intergenic
TGCCACTACCCAAATATTGG+CGG 0.560339 8_2:+21858589 None:intergenic
AGAAGGGGCTAATGGGAGGT+TGG 0.565320 8_2:+21858701 None:intergenic
AGTGGTGCTTGTGGCCCTTG+TGG 0.572724 8_2:-21863619 Msa1239830:CDS
ATCTGGCATGGCTGAAGAAG+GGG 0.574156 8_2:+21858686 None:intergenic
TGGTGGTGATCTTCAAGCAT+TGG 0.576068 8_2:-21858547 Msa1239830:CDS
GGTGGAAACAGTGGTGCTTG+TGG 0.580450 8_2:-21863628 Msa1239830:CDS
GCAGAACTCTCCTACTTACA+AGG 0.583111 8_2:-21858795 Msa1239830:CDS
TTGAGAAGGAAGTGTATCCC+GGG 0.588366 8_2:-21863583 Msa1239830:CDS
GGTACACAAGCGTCTTGATG+CGG 0.599993 8_2:-21863452 Msa1239830:CDS
TCCACCACAAGCACTTCCAA+TGG 0.600735 8_2:-21858733 Msa1239830:CDS
AGCTAGGTGGCCTTGTAAGT+AGG 0.602023 8_2:+21858785 None:intergenic
GGAAAGAGAATGAGATGATG+GGG 0.602088 8_2:+21858470 None:intergenic
AGCGGTAGTGGTTGCAGTGG+TGG 0.604160 8_2:-21863652 Msa1239830:CDS
ACATTTCGCAGCGGTTCACA+AGG 0.604702 8_2:-21863518 Msa1239830:CDS
TTTGTTATGAAGCTCAAGCA+AGG 0.608232 8_2:-21863420 Msa1239830:CDS
GAGACCATTGGAAGTGCTTG+TGG 0.614748 8_2:+21858729 None:intergenic
CTGAAGAAGGGGCTAATGGG+AGG 0.615538 8_2:+21858697 None:intergenic
TGAGCAACACAACCAAAGAC+GGG 0.618298 8_2:+21863388 None:intergenic
CCACTACCCAAATATTGGCG+GGG 0.618911 8_2:+21858591 None:intergenic
AGTACCCCAAACTTCATCAT+GGG 0.621265 8_2:-21858637 Msa1239830:CDS
GCATCAGAGCATGCAACATG+AGG 0.623709 8_2:+21858492 None:intergenic
CAAGTCATATGTATCTGGCA+TGG 0.623715 8_2:+21858674 None:intergenic
TTTAAGATGAGTATAAACTC+CGG 0.626118 8_2:-21863679 None:intergenic
AGGTTGGCTAGTGAGACCAT+TGG 0.630062 8_2:+21858717 None:intergenic
AGTATAAACTCCGGTTGTAG+CGG 0.645022 8_2:-21863670 Msa1239830:CDS
AGTGGTGGTGGTGGAAACAG+TGG 0.645973 8_2:-21863637 Msa1239830:CDS
ACCATTGGAAGTGCTTGTGG+TGG 0.654201 8_2:+21858732 None:intergenic
AGGCGCTTCACATTTCGCAG+CGG 0.690521 8_2:-21863527 Msa1239830:CDS
AAAACTTGCACGCACCACAA+GGG 0.691601 8_2:+21863605 None:intergenic
TCATCCACTAGCAATAATGG+TGG 0.700074 8_2:-21858564 Msa1239830:CDS
TGTAGCGGTAGTGGTTGCAG+TGG 0.700382 8_2:-21863655 Msa1239830:CDS
GTACTTCATATGTAGCTAGG+TGG 0.723309 8_2:+21858772 None:intergenic
ATGACCCATGATGAAGTTTG+GGG 0.727107 8_2:+21858633 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAATAATTTTTTTAA+GGG + chr8_2:21861428-21861447 None:intergenic 0.0%
!!! TACTTATTTTCTTTAAATTA+AGG + chr8_2:21859950-21859969 None:intergenic 10.0%
!! TTTAAAAAATATAACAAGAT+GGG + chr8_2:21860001-21860020 None:intergenic 10.0%
!!! TTTTAAAAAATATAACAAGA+TGG + chr8_2:21860002-21860021 None:intergenic 10.0%
!!! TGTTATATTTTTTAAAATAG+AGG - chr8_2:21860005-21860024 Msa1239830:intron 10.0%
!!! TATTTTTTAAAAGAAGAATT+AGG + chr8_2:21861115-21861134 None:intergenic 10.0%
!!! CTAATATTTTGTTTAAAATA+TGG + chr8_2:21862020-21862039 None:intergenic 10.0%
!! TTGATTAATGACTTAATTAT+TGG - chr8_2:21858829-21858848 Msa1239830:intron 15.0%
!!! AATCTAAACATCTTTTTTTA+TGG + chr8_2:21859062-21859081 None:intergenic 15.0%
!!! TTATAGTTAGTAATTTTTAG+CGG - chr8_2:21859214-21859233 Msa1239830:intron 15.0%
!!! AGTTTTTTTATTTTGAAGAT+GGG + chr8_2:21859376-21859395 None:intergenic 15.0%
!!! AAGTTTTTTTATTTTGAAGA+TGG + chr8_2:21859377-21859396 None:intergenic 15.0%
!! ACTTATATATAACTAATGAT+CGG - chr8_2:21859393-21859412 Msa1239830:intron 15.0%
!!! ATTAAGTAAACGATTTTTTA+TGG - chr8_2:21859480-21859499 Msa1239830:intron 15.0%
!! TATCTTAATGTGAATAAATT+GGG - chr8_2:21860442-21860461 Msa1239830:intron 15.0%
!!! GAGTATATATTTTTTAAATC+AGG + chr8_2:21860541-21860560 None:intergenic 15.0%
!! TTACAATATGTGAAAATAAA+AGG + chr8_2:21860945-21860964 None:intergenic 15.0%
!! CACATATTGTAAAATAAAAA+TGG - chr8_2:21860953-21860972 Msa1239830:intron 15.0%
!! TGTAAATTATACTTATTACT+AGG + chr8_2:21861166-21861185 None:intergenic 15.0%
!!! AAAAGTTACAAAATTTTATG+CGG - chr8_2:21861216-21861235 Msa1239830:intron 15.0%
!! AATTAAGAAAAAAAATGGAT+TGG + chr8_2:21861780-21861799 None:intergenic 15.0%
!!! TTTTTAGTTAGAAAATATGA+TGG + chr8_2:21861878-21861897 None:intergenic 15.0%
!! TTAAACAAAATATTAGAAAG+AGG - chr8_2:21862024-21862043 Msa1239830:intron 15.0%
!!! TTTTCACTATTTTACAAAAT+TGG + chr8_2:21862081-21862100 None:intergenic 15.0%
!!! TTTTGTAAAATAGTGAAAAT+AGG - chr8_2:21862082-21862101 Msa1239830:intron 15.0%
!! TTTGTAAAATAGTGAAAATA+GGG - chr8_2:21862083-21862102 Msa1239830:intron 15.0%
!!! TTTTGACAGTTATAAAATAA+GGG + chr8_2:21862223-21862242 None:intergenic 15.0%
!!! ATTTTGACAGTTATAAAATA+AGG + chr8_2:21862224-21862243 None:intergenic 15.0%
!!! TTATTTTATAACTGTCAAAA+TGG - chr8_2:21862223-21862242 Msa1239830:intron 15.0%
!!! ATATTTCTTTTTTGTTTCAT+AGG - chr8_2:21863305-21863324 Msa1239830:intron 15.0%
!! ACTCAAATTTCATATTGATA+AGG - chr8_2:21859108-21859127 Msa1239830:intron 20.0%
!!! AAGATTTTGTTGATGAATAT+TGG + chr8_2:21859538-21859557 None:intergenic 20.0%
!! TAATTGATTAAGAAGTGATA+TGG - chr8_2:21859745-21859764 Msa1239830:intron 20.0%
!! TGGCAAATTGATTAATTATT+TGG - chr8_2:21860151-21860170 Msa1239830:intron 20.0%
!! AGTAAATGTTACTACTATAT+TGG - chr8_2:21860360-21860379 Msa1239830:intron 20.0%
!! GTATCTTAATGTGAATAAAT+TGG - chr8_2:21860441-21860460 Msa1239830:intron 20.0%
!!! TACATGTTGATATTGATTAA+TGG + chr8_2:21860563-21860582 None:intergenic 20.0%
!! TAGAATGAAATACAGATTAT+TGG + chr8_2:21860806-21860825 None:intergenic 20.0%
!! AAATAGATGACTAAAAATGA+GGG + chr8_2:21861089-21861108 None:intergenic 20.0%
!! AAAATAGATGACTAAAAATG+AGG + chr8_2:21861090-21861109 None:intergenic 20.0%
!!! AAAATTTTATGCGGTTAATA+CGG - chr8_2:21861225-21861244 Msa1239830:intron 20.0%
!! TATACATTCTACTAACAAAA+GGG + chr8_2:21861391-21861410 None:intergenic 20.0%
!! ATATACATTCTACTAACAAA+AGG + chr8_2:21861392-21861411 None:intergenic 20.0%
!! AATTAAAGACTTAAAGCAAA+GGG + chr8_2:21861546-21861565 None:intergenic 20.0%
!! TAATTAAAGACTTAAAGCAA+AGG + chr8_2:21861547-21861566 None:intergenic 20.0%
!! ACTGCAATTAAGAAAAAAAA+TGG + chr8_2:21861785-21861804 None:intergenic 20.0%
!!! TTTTTTCTTAATTGCAGTTT+TGG - chr8_2:21861787-21861806 Msa1239830:intron 20.0%
!! TCCACAAAAAGATATAAATA+GGG + chr8_2:21861815-21861834 None:intergenic 20.0%
!! TTCCACAAAAAGATATAAAT+AGG + chr8_2:21861816-21861835 None:intergenic 20.0%
!!! TTTATATCTTTTTGTGGAAT+TGG - chr8_2:21861817-21861836 Msa1239830:intron 20.0%
!!! AACTGTCGAATTTTAAAATA+GGG + chr8_2:21862053-21862072 None:intergenic 20.0%
!!! AAACTGTCGAATTTTAAAAT+AGG + chr8_2:21862052-21862071 None:intergenic 20.0%
!!! ATTTTAAAATTCGACAGTTT+TGG - chr8_2:21861847-21861866 Msa1239830:intron 20.0%
!!! ATTTTAAAATTCGACAGTTT+TGG + chr8_2:21861847-21861866 None:intergenic 20.0%
!!! AAACTGTCGAATTTTAAAAT+AGG - chr8_2:21862052-21862071 Msa1239830:intron 20.0%
!!! AACTGTCGAATTTTAAAATA+GGG - chr8_2:21862053-21862072 Msa1239830:intron 20.0%
!! TTGTAAAATAGTGAAAATAG+GGG - chr8_2:21862084-21862103 Msa1239830:intron 20.0%
!! AGGATTCTACTAAAAAAAAT+TGG + chr8_2:21862129-21862148 None:intergenic 20.0%
!!! CAAAGTTCTAAATTTTTGAA+CGG + chr8_2:21862270-21862289 None:intergenic 20.0%
!! AAATAACCAAATAAGAAAAG+TGG - chr8_2:21862898-21862917 Msa1239830:intron 20.0%
! ATCATGCTATATTCTAGATA+AGG - chr8_2:21858861-21858880 Msa1239830:intron 25.0%
! TAGAAACCACAAAAACTATT+TGG - chr8_2:21859081-21859100 Msa1239830:intron 25.0%
!! GTTTTTCCAAATAGTTTTTG+TGG + chr8_2:21859090-21859109 None:intergenic 25.0%
!!! CCTTGTAAGTTTTTTTGAAA+CGG - chr8_2:21859176-21859195 Msa1239830:intron 25.0%
! TGGATATGATGAGTAATTTA+CGG + chr8_2:21859287-21859306 None:intergenic 25.0%
!!! TTTTTATTTTGAAGATGGGT+GGG + chr8_2:21859372-21859391 None:intergenic 25.0%
!!! TTTTTTATTTTGAAGATGGG+TGG + chr8_2:21859373-21859392 None:intergenic 25.0%
! TTCTTGCTTGTAAAAATGTA+AGG + chr8_2:21859459-21859478 None:intergenic 25.0%
! TATGGAAAGTTGAAACTAAA+AGG - chr8_2:21859498-21859517 Msa1239830:intron 25.0%
! GAACTAATACTAGTAATCTA+TGG - chr8_2:21859792-21859811 Msa1239830:intron 25.0%
!! TGTTTCTATATGAGAAGATA+GGG + chr8_2:21859927-21859946 None:intergenic 25.0%
! AAAAATATAACAAGATGGGT+GGG + chr8_2:21859997-21860016 None:intergenic 25.0%
! AAAAAATATAACAAGATGGG+TGG + chr8_2:21859998-21860017 None:intergenic 25.0%
!!! GTCTTTCTTGTTATTGTTTT+TGG - chr8_2:21860085-21860104 Msa1239830:intron 25.0%
! ACTACTATATTGGAGTATAT+TGG - chr8_2:21860370-21860389 Msa1239830:intron 25.0%
!!! ATACTAGTATTTTGTTTGTC+AGG - chr8_2:21860397-21860416 Msa1239830:intron 25.0%
! TTTATATCCCAAAATGACTT+TGG - chr8_2:21860625-21860644 Msa1239830:intron 25.0%
!! TTTCATGAAGCAAAACATTT+TGG - chr8_2:21860710-21860729 Msa1239830:intron 25.0%
! ATAGAAAAGAAACAACTCAA+GGG + chr8_2:21860908-21860927 None:intergenic 25.0%
! TATAGAAAAGAAACAACTCA+AGG + chr8_2:21860909-21860928 None:intergenic 25.0%
! TATACGACTCATTTCATATA+TGG + chr8_2:21861036-21861055 None:intergenic 25.0%
! TCTAATTTAACCAAAGTCTT+GGG + chr8_2:21861330-21861349 None:intergenic 25.0%
! TTCTAATTTAACCAAAGTCT+TGG + chr8_2:21861331-21861350 None:intergenic 25.0%
! GAAAAATGAGAACTATAAAC+TGG + chr8_2:21861610-21861629 None:intergenic 25.0%
!! TCCCTATTTATATCTTTTTG+TGG - chr8_2:21861811-21861830 Msa1239830:intron 25.0%
! TTAGTTAGAAAATATGATGG+AGG + chr8_2:21861875-21861894 None:intergenic 25.0%
!!! ACTGTCGAATTTTAAAATAG+GGG - chr8_2:21862054-21862073 Msa1239830:intron 25.0%
! TGTAAAATAGTGAAAATAGG+GGG - chr8_2:21862085-21862104 Msa1239830:intron 25.0%
!!! TGTCTTAAGAGTATTGTTTA+AGG + chr8_2:21862149-21862168 None:intergenic 25.0%
!! AAACCTTTAGTTTATACCAA+CGG - chr8_2:21862179-21862198 Msa1239830:intron 25.0%
! TTGCCCAAATTAAAATGATT+TGG - chr8_2:21862372-21862391 Msa1239830:intron 25.0%
! TGCCCAAATTAAAATGATTT+GGG - chr8_2:21862373-21862392 Msa1239830:intron 25.0%
!!! ACCCCAAATCATTTTAATTT+GGG + chr8_2:21862378-21862397 None:intergenic 25.0%
!!! AACCCCAAATCATTTTAATT+TGG + chr8_2:21862379-21862398 None:intergenic 25.0%
!! ATTAAAATGATTTGGGGTTA+TGG - chr8_2:21862380-21862399 Msa1239830:intron 25.0%
! AATCATAAAAAATAGGACCT+GGG + chr8_2:21862516-21862535 None:intergenic 25.0%
! AAATCATAAAAAATAGGACC+TGG + chr8_2:21862517-21862536 None:intergenic 25.0%
! GAGCAGAAATCATAAAAAAT+AGG + chr8_2:21862523-21862542 None:intergenic 25.0%
! TTCTTATTGGTCAAAAACAA+TGG + chr8_2:21862731-21862750 None:intergenic 25.0%
! TAGTATTTCTCTCTTCTTAT+TGG + chr8_2:21862744-21862763 None:intergenic 25.0%
! AATAAGAAGAGAGAAATACT+AGG - chr8_2:21862743-21862762 Msa1239830:intron 25.0%
AAAGTTGCTACAAAATGTTC+CGG - chr8_2:21858664-21858683 Msa1239830:CDS 30.0%
AAAGGATATATACTAGGGAT+AGG + chr8_2:21858926-21858945 None:intergenic 30.0%
GAGAGAAAGGATATATACTA+GGG + chr8_2:21858931-21858950 None:intergenic 30.0%
AGAGAGAAAGGATATATACT+AGG + chr8_2:21858932-21858951 None:intergenic 30.0%
GTCAAGACAAGAAAAAGAAA+GGG + chr8_2:21859028-21859047 None:intergenic 30.0%
AGTCAAGACAAGAAAAAGAA+AGG + chr8_2:21859029-21859048 None:intergenic 30.0%
! TTCTTTTTCTTGTCTTGACT+TGG - chr8_2:21859029-21859048 Msa1239830:intron 30.0%
CCGTTTCAAAAAAACTTACA+AGG + chr8_2:21859179-21859198 None:intergenic 30.0%
TGGAAAACAAACTTACAATG+TGG + chr8_2:21859315-21859334 None:intergenic 30.0%
!! CATTGTAAGTTTGTTTTCCA+AGG - chr8_2:21859315-21859334 Msa1239830:intron 30.0%
! TTGTTTTCCAAGGATGTTTA+TGG - chr8_2:21859325-21859344 Msa1239830:intron 30.0%
TGATTAAGAAGTGATATGGT+CGG - chr8_2:21859749-21859768 Msa1239830:intron 30.0%
GATTCAACCATTAACATCAT+TGG - chr8_2:21859814-21859833 Msa1239830:intron 30.0%
ACTAAGACCAATGATGTTAA+TGG + chr8_2:21859824-21859843 None:intergenic 30.0%
!!! TCTTAGTTTTTGCTGGTTTT+AGG - chr8_2:21859837-21859856 Msa1239830:intron 30.0%
!!! CTTAGTTTTTGCTGGTTTTA+GGG - chr8_2:21859838-21859857 Msa1239830:intron 30.0%
!!! TTAGTTTTTGCTGGTTTTAG+GGG - chr8_2:21859839-21859858 Msa1239830:intron 30.0%
! GTGTTTCTATATGAGAAGAT+AGG + chr8_2:21859928-21859947 None:intergenic 30.0%
ACAAGAAAGACCACAATTTA+GGG + chr8_2:21860076-21860095 None:intergenic 30.0%
AACAAGAAAGACCACAATTT+AGG + chr8_2:21860077-21860096 None:intergenic 30.0%
TTACTAGTACTTGAGAAACT+TGG - chr8_2:21860121-21860140 Msa1239830:intron 30.0%
!!! TTGAGAAACTTGGCTTTTTT+TGG - chr8_2:21860131-21860150 Msa1239830:intron 30.0%
TCAAACAATATCCAACAATG+TGG + chr8_2:21860274-21860293 None:intergenic 30.0%
!! TAGTATTTTGTTTGTCAGGT+AGG - chr8_2:21860401-21860420 Msa1239830:intron 30.0%
GACATTGACCAATTATTTGA+GGG + chr8_2:21860512-21860531 None:intergenic 30.0%
TGACATTGACCAATTATTTG+AGG + chr8_2:21860513-21860532 None:intergenic 30.0%
!!! AAAACATTTTGGTGTTGTCA+GGG - chr8_2:21860721-21860740 Msa1239830:intron 30.0%
ACTCATTTCATATATGGACT+TGG + chr8_2:21861030-21861049 None:intergenic 30.0%
! CTTTTACATGGGTCTATTAT+AGG + chr8_2:21861517-21861536 None:intergenic 30.0%
CTAAGAAACACTGTTATTAG+AGG + chr8_2:21861580-21861599 None:intergenic 30.0%
!! AATTGGCTTAATTGCAGTTT+TGG + chr8_2:21862112-21862131 None:intergenic 30.0%
!! TCTAAATTTTTGAACGGACT+TGG + chr8_2:21862264-21862283 None:intergenic 30.0%
GCCCAAATTAAAATGATTTG+GGG - chr8_2:21862374-21862393 Msa1239830:intron 30.0%
! AGTTTGAGTAAGACTTGTTT+GGG + chr8_2:21862413-21862432 None:intergenic 30.0%
! AAGTTTGAGTAAGACTTGTT+TGG + chr8_2:21862414-21862433 None:intergenic 30.0%
GTTAAAAAGTTGTCACAAAG+TGG + chr8_2:21862651-21862670 None:intergenic 30.0%
!! CATCGATTTATTGACAACTT+TGG + chr8_2:21862775-21862794 None:intergenic 30.0%
AAGAGAAAAACATGTACAAG+AGG - chr8_2:21862821-21862840 Msa1239830:intron 30.0%
AGAGAAAAACATGTACAAGA+GGG - chr8_2:21862822-21862841 Msa1239830:intron 30.0%
!!! CGTTTTTTGTTTCCTTTTGA+GGG + chr8_2:21862861-21862880 None:intergenic 30.0%
!!! TCGTTTTTTGTTTCCTTTTG+AGG + chr8_2:21862862-21862881 None:intergenic 30.0%
!!! TTATGGCCACTTTTCTTATT+TGG + chr8_2:21862907-21862926 None:intergenic 30.0%
! TGAGCATAACCTTTTCTTTA+TGG + chr8_2:21862924-21862943 None:intergenic 30.0%
!! GTTATAGAAATTGGCTTTGT+TGG - chr8_2:21862974-21862993 Msa1239830:intron 30.0%
TGAATTGCTTCGACAAATAA+GGG + chr8_2:21863066-21863085 None:intergenic 30.0%
TTGAATTGCTTCGACAAATA+AGG + chr8_2:21863067-21863086 None:intergenic 30.0%
CCATATAGCTACTAAGAAAA+CGG + chr8_2:21863130-21863149 None:intergenic 30.0%
! CGTTTTCTTAGTAGCTATAT+GGG - chr8_2:21863128-21863147 Msa1239830:intron 30.0%
! TGTATCTTTTCAATGTCGTT+GGG + chr8_2:21863173-21863192 None:intergenic 30.0%
! TTGTATCTTTTCAATGTCGT+TGG + chr8_2:21863174-21863193 None:intergenic 30.0%
CGACATTGAAAAGATACAAA+AGG - chr8_2:21863175-21863194 Msa1239830:intron 30.0%
TACAAAAGGAAATATACGAG+TGG - chr8_2:21863189-21863208 Msa1239830:intron 30.0%
TAGGTCACATAATATGAACA+TGG + chr8_2:21863279-21863298 None:intergenic 30.0%
TGCTTGAGCTTCATAACAAA+TGG + chr8_2:21858717-21858736 None:intergenic 35.0%
! TTTGTTATGAAGCTCAAGCA+AGG - chr8_2:21858717-21858736 Msa1239830:CDS 35.0%
TATCTTTACTCTTCAGCAAC+AGG - chr8_2:21858772-21858791 Msa1239830:CDS 35.0%
! ATTATAGCTAGCTAGCTTCT+AGG - chr8_2:21858966-21858985 Msa1239830:intron 35.0%
!!! GTAATTTTTAGCGGTATGCA+AGG - chr8_2:21859223-21859242 Msa1239830:intron 35.0%
ATGATGAGTAATTTACGGAG+CGG + chr8_2:21859282-21859301 None:intergenic 35.0%
AACAAACTTACAATGTGGCT+AGG + chr8_2:21859310-21859329 None:intergenic 35.0%
GATTAAGCCATAAACATCCT+TGG + chr8_2:21859335-21859354 None:intergenic 35.0%
TTCATGCAATGCTAGTAGTA+TGG - chr8_2:21859560-21859579 Msa1239830:intron 35.0%
! GCTAGTAGTATGGTTTTTCT+TGG - chr8_2:21859570-21859589 Msa1239830:intron 35.0%
GAAAGAGGAAAACAAGGTAT+AGG - chr8_2:21859658-21859677 Msa1239830:intron 35.0%
!!! TCATTGGTCTTAGTTTTTGC+TGG - chr8_2:21859830-21859849 Msa1239830:intron 35.0%
!! AAATGGTCGGTTAGTTTCTT+GGG - chr8_2:21859862-21859881 Msa1239830:intron 35.0%
!!! TGGGTTTTGGATATTGTGAT+AGG - chr8_2:21859881-21859900 Msa1239830:intron 35.0%
TGGGATTGCTATATAGTGAT+AGG + chr8_2:21859978-21859997 None:intergenic 35.0%
AAGTTAAGACACCATCAAAC+CGG - chr8_2:21860043-21860062 Msa1239830:intron 35.0%
AACGTTGAGATTAACTAGCT+AGG - chr8_2:21860213-21860232 Msa1239830:intron 35.0%
CTTTATGTTGACCACATTGT+TGG - chr8_2:21860260-21860279 Msa1239830:intron 35.0%
ATAGGGATTACAAACACGTA+GGG + chr8_2:21860488-21860507 None:intergenic 35.0%
! ACCAATTATTTGAGGGCATA+GGG + chr8_2:21860505-21860524 None:intergenic 35.0%
!! GAAGGAACCAAAGTCATTTT+GGG + chr8_2:21860635-21860654 None:intergenic 35.0%
! TGAAGGAACCAAAGTCATTT+TGG + chr8_2:21860636-21860655 None:intergenic 35.0%
! CTTTGAAAACTAACATCTCG+AGG + chr8_2:21860660-21860679 None:intergenic 35.0%
!!! CAAAACATTTTGGTGTTGTC+AGG - chr8_2:21860720-21860739 Msa1239830:intron 35.0%
!!! AAACATTTTGGTGTTGTCAG+GGG - chr8_2:21860722-21860741 Msa1239830:intron 35.0%
GTGCTAATTTCAAGAACTCA+GGG + chr8_2:21860784-21860803 None:intergenic 35.0%
TTGGTGCAACAACAAAATGA+GGG + chr8_2:21860837-21860856 None:intergenic 35.0%
AGATGAGTAGGTCTTTCTTT+GGG + chr8_2:21860867-21860886 None:intergenic 35.0%
! CATATATGGACTTGGTACAA+TGG + chr8_2:21861022-21861041 None:intergenic 35.0%
AGATGACTAAAAATGAGGGA+TGG + chr8_2:21861085-21861104 None:intergenic 35.0%
! AAGTTCTCCCTAAGAGTTTT+AGG - chr8_2:21861275-21861294 Msa1239830:intron 35.0%
! AGTTCTCCCTAAGAGTTTTA+GGG - chr8_2:21861276-21861295 Msa1239830:intron 35.0%
AGAAACACTGTTATTAGAGG+TGG + chr8_2:21861577-21861596 None:intergenic 35.0%
CTAACGACTGCTCTTAATTA+GGG - chr8_2:21861668-21861687 Msa1239830:intron 35.0%
TAGCCGTTGGTATAAACTAA+AGG + chr8_2:21862185-21862204 None:intergenic 35.0%
TTTACATAGACTTTAGCCGT+TGG + chr8_2:21862198-21862217 None:intergenic 35.0%
TATAACTGTCAAAATGGCAG+AGG - chr8_2:21862229-21862248 Msa1239830:intron 35.0%
!! ATTTTTGAACGGACTTGGTT+GGG + chr8_2:21862259-21862278 None:intergenic 35.0%
!! AATTTTTGAACGGACTTGGT+TGG + chr8_2:21862260-21862279 None:intergenic 35.0%
TGAACACAAGTTATAAGAGC+AGG - chr8_2:21862448-21862467 Msa1239830:intron 35.0%
GAACACAAGTTATAAGAGCA+GGG - chr8_2:21862449-21862468 Msa1239830:intron 35.0%
AACACAAGTTATAAGAGCAG+GGG - chr8_2:21862450-21862469 Msa1239830:intron 35.0%
! GTATTTTCGGCAAAACAGTT+TGG + chr8_2:21862570-21862589 None:intergenic 35.0%
TCATGTGCATATGAGAGAAA+AGG + chr8_2:21862676-21862695 None:intergenic 35.0%
GAGAAAAACATGTACAAGAG+GGG - chr8_2:21862823-21862842 Msa1239830:intron 35.0%
!! TTGTTTCCTTTTGAGGGTTT+TGG + chr8_2:21862855-21862874 None:intergenic 35.0%
GAAAAGTGGCCATAAAGAAA+AGG - chr8_2:21862912-21862931 Msa1239830:intron 35.0%
TTACGAAGAAGCAGAAGAAA+CGG + chr8_2:21863001-21863020 None:intergenic 35.0%
TTCTGCTTCTTCGTAAGATA+AGG - chr8_2:21863005-21863024 Msa1239830:intron 35.0%
TTCGTAAGATAAGGCGTAAA+CGG - chr8_2:21863014-21863033 Msa1239830:intron 35.0%
TATAGCTACTAAGAAAACGG+CGG + chr8_2:21863127-21863146 None:intergenic 35.0%
! CCGTTTTCTTAGTAGCTATA+TGG - chr8_2:21863127-21863146 Msa1239830:intron 35.0%
! GTATCTTTTCAATGTCGTTG+GGG + chr8_2:21863172-21863191 None:intergenic 35.0%
GAAGACAAGTCATATGTATC+TGG + chr8_2:21863471-21863490 None:intergenic 35.0%
ACATCATCCACTAGCAATAA+TGG - chr8_2:21863570-21863589 Msa1239830:CDS 35.0%
! AGAGAGCTTTTGCATAGATA+TGG - chr8_2:21863615-21863634 Msa1239830:CDS 35.0%
TGGAAAGAGAATGAGATGAT+GGG + chr8_2:21863671-21863690 None:intergenic 35.0%
TTGGAAAGAGAATGAGATGA+TGG + chr8_2:21863672-21863691 None:intergenic 35.0%
AGTATAAACTCCGGTTGTAG+CGG - chr8_2:21858467-21858486 Msa1239830:CDS 40.0%
! TTTGAGAAGGAAGTGTATCC+CGG - chr8_2:21858553-21858572 Msa1239830:CDS 40.0%
TAAGGCGCAAAAATACATCC+CGG + chr8_2:21858575-21858594 None:intergenic 40.0%
! TTTTGCGCCTTACTTCGATT+CGG - chr8_2:21858583-21858602 Msa1239830:CDS 40.0%
ATGAGCAACACAACCAAAGA+CGG + chr8_2:21858753-21858772 None:intergenic 40.0%
CTGGAAAAGCTTAGAGAGAA+AGG + chr8_2:21858944-21858963 None:intergenic 40.0%
AGCTAGCTAGCTATAATAGC+TGG + chr8_2:21858963-21858982 None:intergenic 40.0%
TACGGAGCGGAATGATAAAA+AGG + chr8_2:21859269-21859288 None:intergenic 40.0%
AAACTTACAATGTGGCTAGG+TGG + chr8_2:21859307-21859326 None:intergenic 40.0%
!! TGGGTGGGTATCTTTGATTT+TGG + chr8_2:21859357-21859376 None:intergenic 40.0%
TGCTTTATGCCTTCCAAAAG+AGG - chr8_2:21859607-21859626 Msa1239830:intron 40.0%
! ACCTTTGTTCCTCTTTTGGA+AGG + chr8_2:21859619-21859638 None:intergenic 40.0%
TCCAAAAGAGGAACAAAGGT+TGG - chr8_2:21859619-21859638 Msa1239830:intron 40.0%
CCAAAAGAGGAACAAAGGTT+GGG - chr8_2:21859620-21859639 Msa1239830:intron 40.0%
! AAGGTTGGGTTTGAGTCTTT+TGG - chr8_2:21859634-21859653 Msa1239830:intron 40.0%
! AGGTTGGGTTTGAGTCTTTT+GGG - chr8_2:21859635-21859654 Msa1239830:intron 40.0%
!! TTTGAGTCTTTTGGGGAAAG+AGG - chr8_2:21859643-21859662 Msa1239830:intron 40.0%
TTTGGGGAAAGAGGAAAACA+AGG - chr8_2:21859652-21859671 Msa1239830:intron 40.0%
TTAAGAAGTGATATGGTCGG+CGG - chr8_2:21859752-21859771 Msa1239830:intron 40.0%
!!! TTTGCTGGTTTTAGGGGAAA+TGG - chr8_2:21859845-21859864 Msa1239830:intron 40.0%
!! GAAATGGTCGGTTAGTTTCT+TGG - chr8_2:21859861-21859880 Msa1239830:intron 40.0%
!!! TCGGTTAGTTTCTTGGGTTT+TGG - chr8_2:21859868-21859887 Msa1239830:intron 40.0%
ACATAAAGCAGGAAAGGCTA+TGG + chr8_2:21860248-21860267 None:intergenic 40.0%
TGGTCAACATAAAGCAGGAA+AGG + chr8_2:21860254-21860273 None:intergenic 40.0%
CAATGTGGTCAACATAAAGC+AGG + chr8_2:21860259-21860278 None:intergenic 40.0%
CATAGGGATTACAAACACGT+AGG + chr8_2:21860489-21860508 None:intergenic 40.0%
TCCCTATGCCCTCAAATAAT+TGG - chr8_2:21860501-21860520 Msa1239830:intron 40.0%
! GACCAATTATTTGAGGGCAT+AGG + chr8_2:21860506-21860525 None:intergenic 40.0%
AACTAACATCTCGAGGTTGA+AGG + chr8_2:21860653-21860672 None:intergenic 40.0%
GGTGCTAATTTCAAGAACTC+AGG + chr8_2:21860785-21860804 None:intergenic 40.0%
! CTTGGTGCAACAACAAAATG+AGG + chr8_2:21860838-21860857 None:intergenic 40.0%
TCTTTCTTTGGGTCAAGACT+TGG + chr8_2:21860856-21860875 None:intergenic 40.0%
CAGATGAGTAGGTCTTTCTT+TGG + chr8_2:21860868-21860887 None:intergenic 40.0%
GGTTAATACGGACATTTCGA+GGG - chr8_2:21861237-21861256 Msa1239830:intron 40.0%
CAACAGCCCTAAAACTCTTA+GGG + chr8_2:21861285-21861304 None:intergenic 40.0%
!! ACAAAAGCGCTTAGATGAGA+CGG + chr8_2:21861364-21861383 None:intergenic 40.0%
GCTAACGACTGCTCTTAATT+AGG - chr8_2:21861667-21861686 Msa1239830:intron 40.0%
ATAAAAAATAGGACCTGGGC+TGG + chr8_2:21862512-21862531 None:intergenic 40.0%
! AACTCACGCATGGGTATTTT+CGG + chr8_2:21862583-21862602 None:intergenic 40.0%
ACCAAACCAAAACCCTCAAA+AGG - chr8_2:21862846-21862865 Msa1239830:intron 40.0%
!!! TCCTTTTGAGGGTTTTGGTT+TGG + chr8_2:21862850-21862869 None:intergenic 40.0%
TTTCTATAACACTCGCTCCA+CGG + chr8_2:21862964-21862983 None:intergenic 40.0%
GGAGCGAGTGTTATAGAAAT+TGG - chr8_2:21862965-21862984 Msa1239830:intron 40.0%
TACGAAGAAGCAGAAGAAAC+GGG + chr8_2:21863000-21863019 None:intergenic 40.0%
TTAGTAGCTATATGGGTCTC+CGG - chr8_2:21863135-21863154 Msa1239830:intron 40.0%
GTACTTCATATGTAGCTAGG+TGG + chr8_2:21863368-21863387 None:intergenic 40.0%
! GAGGTACTTCATATGTAGCT+AGG + chr8_2:21863371-21863390 None:intergenic 40.0%
CAAGTCATATGTATCTGGCA+TGG + chr8_2:21863466-21863485 None:intergenic 40.0%
AAGTACCCCAAACTTCATCA+TGG - chr8_2:21863499-21863518 Msa1239830:CDS 40.0%
AGTACCCCAAACTTCATCAT+GGG - chr8_2:21863500-21863519 Msa1239830:CDS 40.0%
ATGACCCATGATGAAGTTTG+GGG + chr8_2:21863507-21863526 None:intergenic 40.0%
CATGACCCATGATGAAGTTT+GGG + chr8_2:21863508-21863527 None:intergenic 40.0%
! ATGTGCCACTACCCAAATAT+TGG + chr8_2:21863554-21863573 None:intergenic 40.0%
TCATCCACTAGCAATAATGG+TGG - chr8_2:21863573-21863592 Msa1239830:CDS 40.0%
ATCACCACCATTATTGCTAG+TGG + chr8_2:21863580-21863599 None:intergenic 40.0%
GGAAAGAGAATGAGATGATG+GGG + chr8_2:21863670-21863689 None:intergenic 40.0%
AAAACTTGCACGCACCACAA+GGG + chr8_2:21858535-21858554 None:intergenic 45.0%
AAAAACTTGCACGCACCACA+AGG + chr8_2:21858536-21858555 None:intergenic 45.0%
!! GTGCGTGCAAGTTTTTGAGA+AGG - chr8_2:21858540-21858559 Msa1239830:CDS 45.0%
! TTGAGAAGGAAGTGTATCCC+GGG - chr8_2:21858554-21858573 Msa1239830:CDS 45.0%
AAGGCGCAAAAATACATCCC+GGG + chr8_2:21858574-21858593 None:intergenic 45.0%
! CAGCGGTTCACAAGGTTTTT+GGG - chr8_2:21858627-21858646 Msa1239830:CDS 45.0%
! AGCGGTTCACAAGGTTTTTG+GGG - chr8_2:21858628-21858647 Msa1239830:CDS 45.0%
TGAGCAACACAACCAAAGAC+GGG + chr8_2:21858752-21858771 None:intergenic 45.0%
GCCTTCCAAAAGAGGAACAA+AGG - chr8_2:21859615-21859634 Msa1239830:intron 45.0%
! CCCAACCTTTGTTCCTCTTT+TGG + chr8_2:21859623-21859642 None:intergenic 45.0%
! GGTTGGGTTTGAGTCTTTTG+GGG - chr8_2:21859636-21859655 Msa1239830:intron 45.0%
TTTGTTCCATGGCTCTTTGC+AGG + chr8_2:21859685-21859704 None:intergenic 45.0%
TGCAAAGAGCCATGGAACAA+AGG - chr8_2:21859684-21859703 Msa1239830:intron 45.0%
GCAAAGAGCCATGGAACAAA+GGG - chr8_2:21859685-21859704 Msa1239830:intron 45.0%
CAAAGAGCCATGGAACAAAG+GGG - chr8_2:21859686-21859705 Msa1239830:intron 45.0%
AAACTGTCCCCTTTGTTCCA+TGG + chr8_2:21859696-21859715 None:intergenic 45.0%
TCGGCGGTTACACATATGTA+TGG - chr8_2:21859768-21859787 Msa1239830:intron 45.0%
!!! CTGGTTTTAGGGGAAATGGT+CGG - chr8_2:21859849-21859868 Msa1239830:intron 45.0%
! CACAATTTAGGGCAGATTGC+CGG + chr8_2:21860065-21860084 None:intergenic 45.0%
! GGGTGTTTGAGTTCGATACT+CGG - chr8_2:21860462-21860481 Msa1239830:intron 45.0%
CGGTTAATACGGACATTTCG+AGG - chr8_2:21861236-21861255 Msa1239830:intron 45.0%
GCAACAGCCCTAAAACTCTT+AGG + chr8_2:21861286-21861305 None:intergenic 45.0%
TTAGGGCTGTTGCATTCCTA+AGG - chr8_2:21861293-21861312 Msa1239830:intron 45.0%
TGGATTCGAACCCAAGACTT+TGG - chr8_2:21861317-21861336 Msa1239830:intron 45.0%
! AAGGGTCTGCGCTTTTACAT+GGG + chr8_2:21861528-21861547 None:intergenic 45.0%
! AAAGGGTCTGCGCTTTTACA+TGG + chr8_2:21861529-21861548 None:intergenic 45.0%
ACAAGTTATAAGAGCAGGGG+CGG - chr8_2:21862453-21862472 Msa1239830:intron 45.0%
TTCTATAACACTCGCTCCAC+GGG + chr8_2:21862963-21862982 None:intergenic 45.0%
TCAATGTCCTTCTGCATCAC+CGG - chr8_2:21863083-21863102 Msa1239830:intron 45.0%
! CTTTTCAATGTCGTTGGGGT+GGG + chr8_2:21863168-21863187 None:intergenic 45.0%
! TCTTTTCAATGTCGTTGGGG+TGG + chr8_2:21863169-21863188 None:intergenic 45.0%
GCAGAACTCTCCTACTTACA+AGG - chr8_2:21863342-21863361 Msa1239830:intron 45.0%
TATCTGGCATGGCTGAAGAA+GGG + chr8_2:21863455-21863474 None:intergenic 45.0%
GCATGACCCATGATGAAGTT+TGG + chr8_2:21863509-21863528 None:intergenic 45.0%
AAATATTGGCGGGGCTCATT+GGG + chr8_2:21863540-21863559 None:intergenic 45.0%
AATGAGCCCCGCCAATATTT+GGG - chr8_2:21863540-21863559 Msa1239830:CDS 45.0%
TGCCACTACCCAAATATTGG+CGG + chr8_2:21863551-21863570 None:intergenic 45.0%
! TGGTGGTGATCTTCAAGCAT+TGG - chr8_2:21863590-21863609 Msa1239830:CDS 45.0%
!!! GTTAATAAATAATTTTTTTA+AGG + chr8_2:21861429-21861448 None:intergenic 5.0%
!!! AAAAAAGAAATATTAATTTT+AGG + chr8_2:21863298-21863317 None:intergenic 5.0%
CCTTGCTCCGAATCGAAGTA+AGG + chr8_2:21858593-21858612 None:intergenic 50.0%
!! CCTTACTTCGATTCGGAGCA+AGG - chr8_2:21858590-21858609 Msa1239830:CDS 50.0%
ACATTTCGCAGCGGTTCACA+AGG - chr8_2:21858619-21858638 Msa1239830:CDS 50.0%
! GCAGCGGTTCACAAGGTTTT+TGG - chr8_2:21858626-21858645 Msa1239830:CDS 50.0%
GCATCAAGACGCTTGTGTAC+CGG + chr8_2:21858686-21858705 None:intergenic 50.0%
GGTACACAAGCGTCTTGATG+CGG - chr8_2:21858685-21858704 Msa1239830:CDS 50.0%
AGGTTGAGAGATCCCGTCTT+TGG - chr8_2:21858737-21858756 Msa1239830:CDS 50.0%
ATAGGTCCTGCAAAGAGCCA+TGG - chr8_2:21859676-21859695 Msa1239830:intron 50.0%
CGGCAATCTGCCCTAAATTG+TGG - chr8_2:21860063-21860082 Msa1239830:intron 50.0%
!!! CATTTTGGTGTTGTCAGGGG+CGG - chr8_2:21860725-21860744 Msa1239830:intron 50.0%
TTCAAGAACTCAGGGTGTGC+AGG + chr8_2:21860776-21860795 None:intergenic 50.0%
CAAGGGCAACACAGATGAGT+AGG + chr8_2:21860879-21860898 None:intergenic 50.0%
GACATTTCGAGGGACCCAAA+TGG - chr8_2:21861247-21861266 Msa1239830:intron 50.0%
TTTCGAGGGACCCAAATGGA+CGG - chr8_2:21861251-21861270 Msa1239830:intron 50.0%
GGAGAACTTGCCGTCCATTT+GGG + chr8_2:21861264-21861283 None:intergenic 50.0%
TTGGGTTCGAATCCAGCCTT+AGG + chr8_2:21861312-21861331 None:intergenic 50.0%
AGCGCTTAGATGAGACGGAA+CGG + chr8_2:21861359-21861378 None:intergenic 50.0%
! GTTCGAGCGAAAAGTGCAGA+AGG + chr8_2:21862548-21862567 None:intergenic 50.0%
GCGTGAGTTAACTCACGCAT+GGG + chr8_2:21862592-21862611 None:intergenic 50.0%
CATGCGTGAGTTAACTCACG+CGG - chr8_2:21862591-21862610 Msa1239830:intron 50.0%
ATGCGTGAGTTAACTCACGC+GGG - chr8_2:21862592-21862611 Msa1239830:intron 50.0%
AGGTTATGCTCAACCACCCT+TGG - chr8_2:21862932-21862951 Msa1239830:intron 50.0%
GGTTATGCTCAACCACCCTT+GGG - chr8_2:21862933-21862952 Msa1239830:intron 50.0%
CAATGTCCTTCTGCATCACC+GGG - chr8_2:21863084-21863103 Msa1239830:intron 50.0%
!! AGCTAGGTGGCCTTGTAAGT+AGG + chr8_2:21863355-21863374 None:intergenic 50.0%
!! ATTGGAAGTGCTTGTGGTGG+AGG + chr8_2:21863405-21863424 None:intergenic 50.0%
TCCACCACAAGCACTTCCAA+TGG - chr8_2:21863404-21863423 Msa1239830:CDS 50.0%
!! ACCATTGGAAGTGCTTGTGG+TGG + chr8_2:21863408-21863427 None:intergenic 50.0%
!! GAGACCATTGGAAGTGCTTG+TGG + chr8_2:21863411-21863430 None:intergenic 50.0%
! AGGTTGGCTAGTGAGACCAT+TGG + chr8_2:21863423-21863442 None:intergenic 50.0%
TGGCTGAAGAAGGGGCTAAT+GGG + chr8_2:21863446-21863465 None:intergenic 50.0%
ATGGCTGAAGAAGGGGCTAA+TGG + chr8_2:21863447-21863466 None:intergenic 50.0%
ATCTGGCATGGCTGAAGAAG+GGG + chr8_2:21863454-21863473 None:intergenic 50.0%
GTATCTGGCATGGCTGAAGA+AGG + chr8_2:21863456-21863475 None:intergenic 50.0%
CAAATATTGGCGGGGCTCAT+TGG + chr8_2:21863541-21863560 None:intergenic 50.0%
CAATGAGCCCCGCCAATATT+TGG - chr8_2:21863539-21863558 Msa1239830:CDS 50.0%
CCACTACCCAAATATTGGCG+GGG + chr8_2:21863549-21863568 None:intergenic 50.0%
GCCACTACCCAAATATTGGC+GGG + chr8_2:21863550-21863569 None:intergenic 50.0%
GCATCAGAGCATGCAACATG+AGG + chr8_2:21863648-21863667 None:intergenic 50.0%
AACTCCGGTTGTAGCGGTAG+TGG - chr8_2:21858473-21858492 Msa1239830:CDS 55.0%
GCAACCACTACCGCTACAAC+CGG + chr8_2:21858480-21858499 None:intergenic 55.0%
! TGTAGCGGTAGTGGTTGCAG+TGG - chr8_2:21858482-21858501 Msa1239830:CDS 55.0%
!! AGTGGTGGTGGTGGAAACAG+TGG - chr8_2:21858500-21858519 Msa1239830:CDS 55.0%
GGTGGAAACAGTGGTGCTTG+TGG - chr8_2:21858509-21858528 Msa1239830:CDS 55.0%
AGGCGCTTCACATTTCGCAG+CGG - chr8_2:21858610-21858629 Msa1239830:CDS 55.0%
!! AGGGCAGATTGCCGGTTTGA+TGG + chr8_2:21860057-21860076 None:intergenic 55.0%
CATCTGTGTTGCCCTTGACG+TGG - chr8_2:21860882-21860901 Msa1239830:intron 55.0%
CAACTCAAGGGCCACGTCAA+GGG + chr8_2:21860896-21860915 None:intergenic 55.0%
ACAACTCAAGGGCCACGTCA+AGG + chr8_2:21860897-21860916 None:intergenic 55.0%
GGGAGAACTTGCCGTCCATT+TGG + chr8_2:21861265-21861284 None:intergenic 55.0%
GGCTGTTGCATTCCTAAGGC+TGG - chr8_2:21861297-21861316 Msa1239830:intron 55.0%
GCGCTTAGATGAGACGGAAC+GGG + chr8_2:21861358-21861377 None:intergenic 55.0%
AAATTTGCACCCCCTGCCTC+AGG - chr8_2:21861458-21861477 Msa1239830:intron 55.0%
AATTTGCACCCCCTGCCTCA+GGG - chr8_2:21861459-21861478 Msa1239830:intron 55.0%
!! ACGCCACTGGGTGTTGTTCA+AGG - chr8_2:21861490-21861509 Msa1239830:intron 55.0%
GGACCTTGAACAACACCCAG+TGG + chr8_2:21861496-21861515 None:intergenic 55.0%
!! AAATAGGACCTGGGCTGGTG+TGG + chr8_2:21862507-21862526 None:intergenic 55.0%
CGCGTGAGTTAACTCACGCA+TGG + chr8_2:21862593-21862612 None:intergenic 55.0%
! AGTGCTTGTGGTGGAGGTGT+TGG + chr8_2:21863399-21863418 None:intergenic 55.0%
AGAAGGGGCTAATGGGAGGT+TGG + chr8_2:21863439-21863458 None:intergenic 55.0%
CTGAAGAAGGGGCTAATGGG+AGG + chr8_2:21863443-21863462 None:intergenic 55.0%
CCCCGCCAATATTTGGGTAG+TGG - chr8_2:21863546-21863565 Msa1239830:CDS 55.0%
! AGCGGTAGTGGTTGCAGTGG+TGG - chr8_2:21858485-21858504 Msa1239830:CDS 60.0%
! GGTAGTGGTTGCAGTGGTGG+TGG - chr8_2:21858488-21858507 Msa1239830:CDS 60.0%
!! AGTGGTTGCAGTGGTGGTGG+TGG - chr8_2:21858491-21858510 Msa1239830:CDS 60.0%
AGTGGTGCTTGTGGCCCTTG+TGG - chr8_2:21858518-21858537 Msa1239830:CDS 60.0%
TGCTCACCCTCACATGCACC+TGG + chr8_2:21860753-21860772 None:intergenic 60.0%
TATCCAGGACCCTGAGGCAG+GGG + chr8_2:21861471-21861490 None:intergenic 60.0%
GTATCCAGGACCCTGAGGCA+GGG + chr8_2:21861472-21861491 None:intergenic 60.0%
AGGGTCCTGGATACGCCACT+GGG - chr8_2:21861478-21861497 Msa1239830:intron 60.0%
CAACACCCAGTGGCGTATCC+AGG + chr8_2:21861486-21861505 None:intergenic 60.0%
CGTTGGGGTGGGAAATGTGC+CGG + chr8_2:21863157-21863176 None:intergenic 60.0%
!! GGTGGAGGTGTTGGTGGTTG+AGG + chr8_2:21863390-21863409 None:intergenic 60.0%
!! GCTTGTGGTGGAGGTGTTGG+TGG + chr8_2:21863396-21863415 None:intergenic 60.0%
GCGGAGCCAGGTGCATGTGA+GGG - chr8_2:21860744-21860763 Msa1239830:intron 65.0%
ATCCAGGACCCTGAGGCAGG+GGG + chr8_2:21861470-21861489 None:intergenic 65.0%
CGTATCCAGGACCCTGAGGC+AGG + chr8_2:21861473-21861492 None:intergenic 65.0%
GTGGCGTATCCAGGACCCTG+AGG + chr8_2:21861477-21861496 None:intergenic 65.0%
CAGGGTCCTGGATACGCCAC+TGG - chr8_2:21861477-21861496 Msa1239830:intron 65.0%
GGCAATAGCCACACCAGCCC+AGG - chr8_2:21862496-21862515 Msa1239830:intron 65.0%
ACCACCCTTGGGTTCACCCG+TGG - chr8_2:21862944-21862963 Msa1239830:intron 65.0%
TCCACGGGTGAACCCAAGGG+TGG + chr8_2:21862948-21862967 None:intergenic 65.0%
CGCTCCACGGGTGAACCCAA+GGG + chr8_2:21862951-21862970 None:intergenic 65.0%
TCGCTCCACGGGTGAACCCA+AGG + chr8_2:21862952-21862971 None:intergenic 65.0%
CCTTCTGCATCACCGGGCAG+CGG - chr8_2:21863090-21863109 Msa1239830:intron 65.0%
GTGTTGTCAGGGGCGGAGCC+AGG - chr8_2:21860732-21860751 Msa1239830:intron 70.0%
GGCGGAGCCAGGTGCATGTG+AGG - chr8_2:21860743-21860762 Msa1239830:intron 70.0%
AGCAGGGGCGGACCTGAGCA+GGG - chr8_2:21862465-21862484 Msa1239830:intron 70.0%
GACCTGAGCAGGGCAGGGTG+TGG - chr8_2:21862475-21862494 Msa1239830:intron 70.0%
TGCCACACCCTGCCCTGCTC+AGG + chr8_2:21862480-21862499 None:intergenic 70.0%
CCGCTGCCCGGTGATGCAGA+AGG + chr8_2:21863093-21863112 None:intergenic 70.0%
GTTCCTCCTGCACCGCTGCC+CGG + chr8_2:21863105-21863124 None:intergenic 70.0%
CACCCCCTGCCTCAGGGTCC+TGG - chr8_2:21861465-21861484 Msa1239830:intron 75.0%
GAGCAGGGGCGGACCTGAGC+AGG - chr8_2:21862464-21862483 Msa1239830:intron 75.0%
GGGCGGACCTGAGCAGGGCA+GGG - chr8_2:21862470-21862489 Msa1239830:intron 75.0%
GCATCACCGGGCAGCGGTGC+AGG - chr8_2:21863096-21863115 Msa1239830:intron 75.0%
TCACCGGGCAGCGGTGCAGG+AGG - chr8_2:21863099-21863118 Msa1239830:intron 75.0%
! GGGGCGGACCTGAGCAGGGC+AGG - chr8_2:21862469-21862488 Msa1239830:intron 80.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 21858464 21863695 21858464 ID=Msa1239830;Name=Msa1239830
chr8_2 mRNA 21858464 21863695 21858464 ID=Msa1239830-mRNA-1;Parent=Msa1239830;Name=Msa1239830-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0|1|1|1|2|0|232
chr8_2 exon 21863366 21863695 21863366 ID=Msa1239830-mRNA-1:exon:7817;Parent=Msa1239830-mRNA-1
chr8_2 exon 21858464 21858832 21858464 ID=Msa1239830-mRNA-1:exon:7816;Parent=Msa1239830-mRNA-1
chr8_2 CDS 21863366 21863695 21863366 ID=Msa1239830-mRNA-1:cds;Parent=Msa1239830-mRNA-1
chr8_2 CDS 21858464 21858832 21858464 ID=Msa1239830-mRNA-1:cds;Parent=Msa1239830-mRNA-1
Gene Sequence

>Msa1239830

ATGAGTATAAACTCCGGTTGTAGCGGTAGTGGTTGCAGTGGTGGTGGTGGAAACAGTGGTGCTTGTGGCCCTTGTGGTGCGTGCAAGTTTTTGAGAAGGAAGTGTATCCCGGGATGTATTTTTGCGCCTTACTTCGATTCGGAGCAAGGCGCTTCACATTTCGCAGCGGTTCACAAGGTTTTTGGGGCTAGTAACGTTTCAAAGTTGCTACAAAATGTTCCGGTACACAAGCGTCTTGATGCGGTTATCACCATTTGTTATGAAGCTCAAGCAAGGTTGAGAGATCCCGTCTTTGGTTGTGTTGCTCATATCTTTACTCTTCAGCAACAGGTGATGAGTTTACAAGCAGAACTCTCCTACTTACAAGGCCACCTAGCTACATATGAAGTACCTCAACCACCAACACCTCCACCACAAGCACTTCCAATGGTCTCACTAGCCAACCTCCCATTAGCCCCTTCTTCAGCCATGCCAGATACATATGACTTGTCTTCACTATATGAAGTACCCCAAACTTCATCATGGGTCATGCAACAAAGACCCAATGAGCCCCGCCAATATTTGGGTAGTGGCACATCATCCACTAGCAATAATGGTGGTGATCTTCAAGCATTGGCTAGAGAGCTTTTGCATAGATATGGATCTATTCCTCATGTTGCATGCTCTGATGCCCCATCATCTCATTCTCTTTCCAAATGA

Protein sequence

>Msa1239830

MSINSGCSGSGCSGGGGNSGACGPCGACKFLRRKCIPGCIFAPYFDSEQGASHFAAVHKVFGASNVSKLLQNVPVHKRLDAVITICYEAQARLRDPVFGCVAHIFTLQQQVMSLQAELSYLQGHLATYEVPQPPTPPPQALPMVSLANLPLAPSSAMPDTYDLSSLYEVPQTSSWVMQQRPNEPRQYLGSGTSSTSNNGGDLQALARELLHRYGSIPHVACSDAPSSHSLSK*