AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0226410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226410 MtrunA17_Chr2g0332971 97.525 404 10 0 1 404 1 404 0.0 811
Msa0226410 MtrunA17_Chr5g0418411 45.679 405 204 5 5 402 1 396 3.31e-119 352
Msa0226410 MtrunA17_Chr3g0121891 44.581 406 206 6 5 402 1 395 3.17e-112 334
Msa0226410 MtrunA17_Chr4g0043661 42.857 406 212 6 5 402 1 394 7.48e-110 328
Msa0226410 MtrunA17_Chr3g0121881 42.079 404 222 4 1 402 6 399 7.95e-110 328
Msa0226410 MtrunA17_Chr4g0018151 44.769 411 198 6 5 402 46 440 5.86e-106 320
Msa0226410 MtrunA17_Chr8g0337571 43.276 409 200 10 5 402 1 388 1.88e-104 314
Msa0226410 MtrunA17_Chr6g0461181 40.670 418 194 7 27 402 29 434 1.29e-103 313
Msa0226410 MtrunA17_Chr2g0332801 42.350 366 205 5 28 392 59 419 9.90e-95 291
Msa0226410 MtrunA17_Chr7g0228411 40.244 410 207 8 19 401 31 429 3.51e-91 281
Msa0226410 MtrunA17_Chr1g0173451 41.667 348 191 3 23 370 71 406 4.43e-91 282
Msa0226410 MtrunA17_Chr8g0365901 39.945 363 210 5 29 390 66 421 3.26e-88 275
Msa0226410 MtrunA17_Chr8g0337581 39.512 410 215 11 5 402 1 389 3.18e-87 270
Msa0226410 MtrunA17_Chr1g0150291 38.144 388 226 7 8 393 25 400 9.42e-87 269
Msa0226410 MtrunA17_Chr6g0449961 38.281 384 221 10 23 404 40 409 2.16e-84 263
Msa0226410 MtrunA17_Chr3g0100091 40.053 377 164 6 28 402 30 346 7.98e-84 260
Msa0226410 MtrunA17_Chr1g0150301 36.548 394 233 8 5 393 1 382 1.24e-83 261
Msa0226410 MtrunA17_Chr4g0052621 36.340 388 235 7 23 402 60 443 2.43e-82 259
Msa0226410 MtrunA17_Chr1g0194231 36.364 385 235 7 28 404 81 463 3.08e-79 252
Msa0226410 MtrunA17_Chr4g0020771 39.650 343 199 5 30 370 76 412 7.13e-79 250
Msa0226410 MtrunA17_Chr5g0413411 35.222 406 229 10 25 402 118 517 7.92e-78 250
Msa0226410 MtrunA17_Chr7g0270361 34.197 386 241 7 28 404 67 448 1.08e-76 245
Msa0226410 MtrunA17_Chr8g0365891 35.294 408 229 10 24 402 103 504 1.50e-76 246
Msa0226410 MtrunA17_Chr5g0413141 34.771 371 232 6 27 392 58 423 6.98e-75 240
Msa0226410 MtrunA17_Chr3g0089021 40.741 351 200 5 23 372 66 409 1.68e-73 236
Msa0226410 MtrunA17_Chr1g0149241 34.975 406 215 9 5 404 2 364 4.40e-73 233
Msa0226410 MtrunA17_Chr7g0230891 35.533 394 236 10 14 402 20 400 2.83e-72 231
Msa0226410 MtrunA17_Chr8g0336481 44.238 269 133 6 90 356 14 267 6.60e-70 221
Msa0226410 MtrunA17_Chr7g0257701 38.663 344 165 6 21 328 57 390 7.37e-69 223
Msa0226410 MtrunA17_Chr4g0067631 38.268 358 207 10 22 373 46 395 1.43e-67 220
Msa0226410 MtrunA17_Chr7g0257721 43.321 277 150 5 12 287 60 330 2.13e-67 217
Msa0226410 MtrunA17_Chr2g0303941 36.203 395 231 13 1 390 1 379 5.26e-67 218
Msa0226410 MtrunA17_Chr1g0195221 36.415 357 216 7 28 381 35 383 7.24e-67 218
Msa0226410 MtrunA17_Chr4g0043431 37.566 378 221 9 28 402 35 400 1.28e-65 214
Msa0226410 MtrunA17_Chr8g0348981 34.115 384 232 9 28 402 27 398 3.83e-65 213
Msa0226410 MtrunA17_Chr8g0337521 40.068 292 147 7 5 287 1 273 7.08e-63 204
Msa0226410 MtrunA17_Chr2g0293681 33.679 386 212 7 24 402 63 411 3.59e-62 206
Msa0226410 MtrunA17_Chr8g0337601 44.444 243 129 2 160 402 4 240 5.57e-62 200
Msa0226410 MtrunA17_Chr8g0337511 44.017 234 124 3 158 391 5 231 1.58e-61 199
Msa0226410 MtrunA17_Chr2g0307831 34.324 370 233 7 9 373 3 367 2.31e-61 204
Msa0226410 MtrunA17_Chr2g0307821 34.324 370 233 7 9 373 3 367 2.31e-61 204
Msa0226410 MtrunA17_Chr2g0307811 34.584 373 228 9 9 373 3 367 5.21e-61 202
Msa0226410 MtrunA17_Chr2g0291841 36.000 350 199 11 62 402 29 362 2.08e-58 194
Msa0226410 MtrunA17_Chr5g0425811 38.246 285 156 9 46 325 3 272 3.38e-53 178
Msa0226410 MtrunA17_Chr2g0295451 37.755 294 173 7 29 318 54 341 6.86e-52 178
Msa0226410 MtrunA17_Chr5g0447901 34.076 314 188 10 13 319 10 311 1.85e-49 170
Msa0226410 MtrunA17_Chr3g0093011 36.889 225 139 1 168 389 24 248 1.27e-45 158
Msa0226410 MtrunA17_Chr8g0337351 42.690 171 97 1 168 337 1 171 1.19e-38 137
Msa0226410 MtrunA17_Chr8g0337551 49.219 128 65 0 160 287 7 134 7.04e-37 131
Msa0226410 MtrunA17_Chr7g0273191 43.165 139 76 2 134 271 2 138 9.82e-33 120
Msa0226410 MtrunA17_Chr8g0337541 38.323 167 80 7 5 161 1 154 8.10e-26 102
Msa0226410 MtrunA17_Chr3g0093021 38.028 142 75 6 11 146 5 139 5.25e-23 95.1
Msa0226410 MtrunA17_Chr7g0255311 28.710 310 167 12 32 305 67 358 6.47e-23 100
Msa0226410 MtrunA17_Chr7g0270821 25.293 427 246 16 27 396 42 452 1.08e-22 99.8
Msa0226410 MtrunA17_Chr1g0202641 24.937 397 253 12 32 397 559 941 3.55e-22 99.4
Msa0226410 MtrunA17_Chr1g0202641 25.316 395 254 11 32 397 59 441 4.15e-21 95.9
Msa0226410 MtrunA17_Chr8g0337561 42.609 115 60 2 290 404 8 116 1.21e-21 89.4
Msa0226410 MtrunA17_Chr4g0070281 25.245 408 236 14 28 392 75 456 1.22e-21 96.7
Msa0226410 MtrunA17_Chr1g0202651 27.852 298 171 8 32 298 59 343 2.99e-21 95.5
Msa0226410 MtrunA17_Chr8g0387391 24.734 376 220 13 29 354 45 407 1.38e-20 93.6
Msa0226410 MtrunA17_Chr8g0337531 39.535 129 71 3 274 402 10 131 1.50e-20 87.0
Msa0226410 MtrunA17_Chr2g0301091 25.248 404 241 13 28 392 56 437 2.31e-20 92.8
Msa0226410 MtrunA17_Chr1g0202621 24.745 392 254 9 32 397 52 428 2.32e-20 92.8
Msa0226410 MtrunA17_Chr8g0348491 23.928 443 276 12 3 397 12 441 1.38e-19 90.5
Msa0226410 MtrunA17_Chr2g0330221 29.000 200 125 8 10 205 7 193 3.09e-18 82.8
Msa0226410 MtrunA17_Chr3g0095221 26.791 321 186 9 27 314 46 350 6.19e-18 85.5
Msa0226410 MtrunA17_Chr7g0248451 27.575 301 174 10 29 298 56 343 1.06e-17 84.7
Msa0226410 MtrunA17_Chr5g0442221 25.688 327 187 12 25 314 41 348 1.30e-17 84.3
Msa0226410 MtrunA17_Chr1g0193961 25.387 323 196 9 27 318 42 350 3.74e-17 83.2
Msa0226410 MtrunA17_Chr3g0130251 27.301 326 169 14 30 312 78 378 9.01e-17 82.0
Msa0226410 MtrunA17_Chr8g0336471 42.045 88 43 3 5 85 1 87 1.73e-15 71.6
Msa0226410 MtrunA17_Chr8g0373171 42.500 80 46 0 163 242 12 91 9.98e-15 70.5
Msa0226410 MtrunA17_Chr4g0067811 24.513 359 215 12 27 348 39 378 8.79e-14 72.8
Msa0226410 MtrunA17_Chr8g0373161 42.857 70 39 1 23 92 28 96 1.60e-13 66.6
Msa0226410 MtrunA17_Chr7g0273181 35.714 84 53 1 310 393 6 88 1.69e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0226410 AT5G17200.1 44.186 430 189 8 8 402 6 419 4.29e-114 340
Msa0226410 AT5G27530.1 42.500 400 206 3 6 402 31 409 1.36e-107 325
Msa0226410 AT4G35670.1 42.394 401 215 4 5 402 1 388 9.08e-104 313
Msa0226410 AT5G44840.1 39.950 398 230 4 5 402 1 389 2.92e-102 308
Msa0226410 AT3G15720.3 39.950 398 221 7 10 402 4 388 8.03e-97 297
Msa0226410 AT3G15720.1 39.950 398 221 7 10 402 5 389 8.63e-97 297
Msa0226410 AT3G15720.2 39.950 398 218 8 10 402 4 385 2.53e-95 293
Msa0226410 AT4G32380.1 39.578 379 207 4 13 389 24 382 2.50e-92 285
Msa0226410 AT1G80170.1 39.623 371 219 4 24 393 49 415 4.57e-92 284
Msa0226410 AT3G57510.1 41.287 373 208 8 11 380 52 416 4.40e-90 279
Msa0226410 AT5G44830.1 40.974 349 187 3 54 402 1 330 9.40e-90 275
Msa0226410 AT1G56710.1 39.691 388 221 6 26 404 46 429 1.46e-89 278
Msa0226410 AT1G70500.1 38.259 379 222 5 15 390 54 423 3.15e-86 270
Msa0226410 AT2G41850.1 41.598 363 202 7 14 373 54 409 1.20e-85 267
Msa0226410 AT1G23460.2 38.843 363 214 5 29 390 44 399 1.36e-84 265
Msa0226410 AT1G23460.1 38.843 363 214 5 29 390 68 423 2.81e-84 265
Msa0226410 AT5G14650.1 38.583 381 223 8 24 402 47 418 7.34e-82 258
Msa0226410 AT1G02460.1 37.209 387 230 8 28 403 89 473 9.57e-81 256
Msa0226410 AT3G07970.1 39.828 349 203 5 23 370 66 408 1.71e-80 254
Msa0226410 AT4G01890.1 36.896 393 233 9 22 402 59 448 4.50e-80 254
Msa0226410 AT1G48100.1 35.897 390 238 7 23 404 75 460 5.11e-80 254
Msa0226410 AT1G10640.1 35.961 406 226 11 25 402 116 515 3.96e-79 253
Msa0226410 AT1G60590.1 35.437 412 229 10 22 402 117 522 2.28e-78 252
Msa0226410 AT3G15720.4 38.988 336 189 5 71 402 2 325 9.32e-78 246
Msa0226410 AT1G05660.1 36.591 399 235 10 8 402 8 392 4.30e-77 244
Msa0226410 AT4G32380.2 35.544 377 184 4 13 389 24 341 2.00e-76 243
Msa0226410 AT1G05650.1 37.371 388 225 10 8 391 8 381 2.81e-76 242
Msa0226410 AT3G26610.1 35.484 372 227 6 28 391 67 433 9.66e-75 240
Msa0226410 AT2G43890.1 37.921 356 206 9 11 362 10 354 2.24e-72 232
Msa0226410 AT4G35670.2 43.686 293 149 4 113 402 2 281 5.83e-72 227
Msa0226410 AT4G32370.1 38.369 331 187 6 1 322 4 326 8.75e-72 229
Msa0226410 AT2G43880.1 37.632 380 218 9 27 402 30 394 1.93e-71 229
Msa0226410 AT1G02790.1 38.012 342 194 9 26 365 50 375 2.93e-69 225
Msa0226410 AT1G78400.1 37.067 375 218 8 22 390 29 391 9.29e-69 223
Msa0226410 AT2G43860.1 38.021 384 219 12 26 404 31 400 1.94e-67 219
Msa0226410 AT1G65570.1 35.101 396 240 11 1 391 3 386 1.94e-66 217
Msa0226410 AT1G80170.2 42.322 267 149 4 24 289 49 311 2.73e-66 214
Msa0226410 AT5G39910.1 33.957 374 186 5 4 375 13 327 2.83e-66 216
Msa0226410 AT1G43080.1 34.243 403 242 11 13 402 11 403 5.19e-66 216
Msa0226410 AT4G32375.1 39.860 286 163 2 104 388 4 281 5.92e-66 216
Msa0226410 AT2G15460.1 35.829 374 220 11 28 392 31 393 9.04e-66 215
Msa0226410 AT1G80140.1 36.176 340 205 4 66 402 6 336 9.39e-66 213
Msa0226410 AT1G43090.1 35.310 371 222 10 28 390 31 391 2.76e-65 215
Msa0226410 AT2G15450.1 35.561 374 221 11 28 392 31 393 3.50e-65 214
Msa0226410 AT2G26620.1 34.771 371 226 9 28 392 31 391 5.90e-65 213
Msa0226410 AT2G40310.1 32.847 411 244 11 9 402 8 403 1.12e-64 212
Msa0226410 AT4G13760.1 35.230 369 216 11 9 365 8 365 1.22e-64 212
Msa0226410 AT1G17150.1 33.498 406 254 10 2 402 7 401 4.01e-64 211
Msa0226410 AT2G43870.1 34.336 399 239 14 10 402 3 384 4.88e-64 210
Msa0226410 AT1G43100.1 34.271 391 234 11 13 390 11 391 8.50e-64 211
Msa0226410 AT4G18180.1 34.367 387 233 8 1 372 1 381 8.83e-64 211
Msa0226410 AT2G15470.1 35.294 374 222 11 28 392 31 393 1.47e-63 209
Msa0226410 AT3G59850.1 37.249 349 202 10 27 370 22 358 4.20e-63 207
Msa0226410 AT3G59850.2 37.249 349 202 10 27 370 66 402 4.55e-63 209
Msa0226410 AT2G33160.1 35.215 372 220 10 28 390 32 391 1.58e-62 213
Msa0226410 AT3G07820.1 33.512 373 229 9 5 373 1 358 2.01e-59 198
Msa0226410 AT5G14650.2 41.199 267 148 6 24 289 47 305 8.94e-59 194
Msa0226410 AT5G48140.1 35.347 331 200 7 46 373 39 358 2.60e-58 195
Msa0226410 AT2G43880.2 38.667 300 173 7 27 325 30 319 3.91e-57 190
Msa0226410 AT3G07830.1 31.540 409 250 10 5 399 1 393 9.39e-56 189
Msa0226410 AT3G07840.1 33.333 366 225 10 11 373 10 359 2.10e-53 182
Msa0226410 AT3G07850.1 34.961 389 227 10 21 403 63 431 5.86e-53 182
Msa0226410 AT3G14040.1 35.248 383 222 10 27 403 70 432 7.47e-53 182
Msa0226410 AT2G23900.1 25.735 408 237 16 32 397 60 443 7.77e-25 106
Msa0226410 AT3G62110.1 25.187 401 265 10 27 401 42 433 4.29e-24 104
Msa0226410 AT3G62110.2 25.187 401 265 10 27 401 42 433 4.29e-24 104
Msa0226410 AT3G42950.1 26.716 408 230 13 28 392 66 447 1.07e-23 103
Msa0226410 AT3G48950.1 27.414 321 165 13 32 306 49 347 1.95e-22 99.4
Msa0226410 AT3G61490.4 28.333 300 173 9 29 298 159 446 3.57e-22 99.0
Msa0226410 AT3G61490.5 28.378 296 178 6 29 298 61 348 4.52e-22 98.2
Msa0226410 AT3G61490.2 28.378 296 178 6 29 298 46 333 6.79e-22 97.8
Msa0226410 AT3G61490.3 28.378 296 178 6 29 298 46 333 6.79e-22 97.8
Msa0226410 AT3G61490.1 28.378 296 178 6 29 298 46 333 6.79e-22 97.8
Msa0226410 AT4G33440.1 29.063 320 175 12 28 312 72 374 2.96e-21 95.9
Msa0226410 AT4G23500.1 24.064 374 221 12 32 355 72 432 2.55e-18 87.0
Msa0226410 AT5G41870.1 26.101 318 191 8 28 314 45 349 1.47e-17 84.7
Msa0226410 AT4G23820.1 26.814 317 187 10 29 314 42 344 2.94e-17 83.6
Msa0226410 AT1G19170.1 24.623 398 252 14 28 392 87 469 4.21e-16 80.5
Msa0226410 AT3G16850.1 23.380 355 200 11 27 329 39 373 6.05e-12 67.4
Msa0226410 AT5G49215.2 23.962 313 184 11 30 306 43 337 8.35e-11 63.9
Msa0226410 AT5G49215.1 23.962 313 184 11 30 306 45 339 9.17e-11 63.9

Find 93 sgRNAs with CRISPR-Local

Find 184 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCAATCCATGTGTTTATT+TGG 0.080796 2_1:-76902467 None:intergenic
ATATCAATGCCATCAGTATT+AGG 0.225865 2_1:-76903013 None:intergenic
TGCTATCGATTTCAAATAAA+AGG 0.252766 2_1:+76902893 Msa0226410:CDS
TTTGATTAACACAATAAAAT+TGG 0.261059 2_1:-76903744 None:intergenic
AACTCTAACAAGCTGCAAAA+AGG 0.263487 2_1:+76902949 Msa0226410:CDS
ACCAATCCATGTGTTTATTT+GGG 0.310797 2_1:-76902466 None:intergenic
TAAAATTGGTCAATCATAAT+GGG 0.312360 2_1:-76903730 None:intergenic
GGTTAGAGCACCCCACATTT+TGG 0.323169 2_1:-76903985 None:intergenic
GGTCAATCATAATGGGGTTA+TGG 0.323679 2_1:-76903723 None:intergenic
TGTTACATCACTCACTTTGA+TGG 0.324284 2_1:-76903906 None:intergenic
ACTTTCAATGTATTGCAATA+TGG 0.324810 2_1:+76901055 Msa0226410:CDS
TGCAGCTTGTTAGAGTTATA+TGG 0.325682 2_1:-76902943 None:intergenic
ATAAAATTGGTCAATCATAA+TGG 0.333850 2_1:-76903731 None:intergenic
AAGGAGAAAACCTTCATCTT+AGG 0.335531 2_1:-76904043 None:intergenic
TTCAACTAGCATATATTATA+TGG 0.344021 2_1:-76904148 None:intergenic
AAAACAAAATCGGAATATTC+AGG 0.348846 2_1:+76902441 Msa0226410:CDS
TGTTGTAGCATTGGATCATT+GGG 0.360291 2_1:+76903366 Msa0226410:intron
ACGTTGACTGAAACATTAAC+TGG 0.363004 2_1:+76903438 Msa0226410:CDS
CATGGACCACGGAAAGCTAT+TGG 0.364550 2_1:-76901340 None:intergenic
CTTAACTCTTTCATTGCAAC+TGG 0.372034 2_1:+76903061 Msa0226410:CDS
TTGAGCAAGCAGTTTAGAAT+TGG 0.374243 2_1:-76904103 None:intergenic
TTGTTGTAGCATTGGATCAT+TGG 0.378542 2_1:+76903365 Msa0226410:intron
GTCAATCATAATGGGGTTAT+GGG 0.383263 2_1:-76903722 None:intergenic
AGGCTCTTCCATGAGCATTA+TGG 0.387155 2_1:-76904069 None:intergenic
TTAATTTACAGGAGAATCAT+TGG 0.387802 2_1:-76901098 None:intergenic
TATCAATGCCATCAGTATTA+GGG 0.410347 2_1:-76903012 None:intergenic
CAAGCAGTTTAGAATTGGTT+TGG 0.412319 2_1:-76904098 None:intergenic
AGAGTTATATGGCTTCTTGC+TGG 0.423641 2_1:-76902932 None:intergenic
GGTTTGATTATAAGTGGAAA+AGG 0.427621 2_1:+76902504 Msa0226410:CDS
GTGGTCCAGGACATGGTATC+AGG 0.443137 2_1:+76903237 Msa0226410:CDS
AGTGGAAAAGGGACTATTGA+TGG 0.444615 2_1:+76902516 Msa0226410:CDS
ATGCACATCCTCTACAATAT+CGG 0.446275 2_1:-76903403 None:intergenic
AACATCCGTCTAATTGCTCC+TGG 0.450766 2_1:+76902983 Msa0226410:CDS
TGTTGCACCTAAAACAAAAT+CGG 0.452223 2_1:+76902431 Msa0226410:CDS
GTGAGTGATGTAACATATAG+AGG 0.462577 2_1:+76903914 Msa0226410:CDS
GATGTGTGTCAAAGCAAATC+AGG 0.463712 2_1:+76901271 Msa0226410:CDS
GTTTGATTATAAGTGGAAAA+GGG 0.469200 2_1:+76902505 Msa0226410:CDS
TCCTTCTGCCATAATGCTCA+TGG 0.470413 2_1:+76904061 Msa0226410:CDS
GTGAATGGTTTGATTATAAG+TGG 0.472070 2_1:+76902498 Msa0226410:CDS
GATTGCATTGCTATTAGTGC+TGG 0.472202 2_1:+76903182 Msa0226410:CDS
AGTAAGAATGTCTTGGCTGC+TGG 0.474123 2_1:-76901313 None:intergenic
ATTGGTTTCTCATTTGTGAA+TGG 0.475752 2_1:+76902483 Msa0226410:CDS
ATCTGCTGTTCCTAAGATGA+AGG 0.477417 2_1:+76904033 Msa0226410:CDS
CATTGTTGTGCTTTAGAACA+AGG 0.484511 2_1:-76900829 None:intergenic
TCCCAAATAAACACATGGAT+TGG 0.484532 2_1:+76902465 Msa0226410:CDS
AATTCTGAACAGGGTGGAGG+TGG 0.496437 2_1:+76903655 Msa0226410:intron
ATCTAATTATATTTACATTG+AGG 0.498845 2_1:+76901366 Msa0226410:CDS
GTAACATATAGAGGGATTAG+TGG 0.503191 2_1:+76903923 Msa0226410:CDS
GTATTGCAATATGGAGCAGT+TGG 0.517751 2_1:+76901064 Msa0226410:CDS
TAAATATAATTAGATTTGCA+TGG 0.520032 2_1:-76901358 None:intergenic
CAATATGGAGCAGTTGGAGA+TGG 0.520589 2_1:+76901070 Msa0226410:CDS
CACAACAATGTTTCATACAA+TGG 0.525087 2_1:+76900842 Msa0226410:exon
TGGCCTCAGTAAGAATGTCT+TGG 0.534716 2_1:-76901320 None:intergenic
ACTAACCTGATACCATGTCC+TGG 0.541363 2_1:-76903242 None:intergenic
TTTGAACTGCGACCAAAATG+TGG 0.542733 2_1:+76903973 Msa0226410:CDS
AGTAAGAATCAAGACAAAGC+AGG 0.556906 2_1:+76903461 Msa0226410:CDS
TCAGTATTAGGGCTCTCTCC+AGG 0.559038 2_1:-76903001 None:intergenic
TGCAACTATTATGATTCCAA+AGG 0.560466 2_1:-76904188 None:intergenic
CATAAACACGATCAAATACA+AGG 0.567940 2_1:-76904006 None:intergenic
TGTAATTCTGAACAGGGTGG+AGG 0.571596 2_1:+76903652 Msa0226410:intron
TAGGTACTACTTACTGTTGG+TGG 0.572062 2_1:-76902732 None:intergenic
ATTCTAAGTATGTTTAAACT+CGG 0.572318 2_1:+76901016 Msa0226410:CDS
ACTGCTATAACATGTGGTCC+AGG 0.572929 2_1:+76903224 Msa0226410:CDS
TAGAATTGGTTTGGTGTGTG+AGG 0.574986 2_1:-76904089 None:intergenic
GGTGGTGGATTTCCTATGCA+AGG 0.577836 2_1:-76902564 None:intergenic
AGGGTGGAGGTGGATTTGCT+AGG 0.585416 2_1:+76903665 Msa0226410:intron
GTGGAGGTGGATTTGCTAGG+AGG 0.587173 2_1:+76903668 Msa0226410:CDS
TTGTAGCATTGGATCATTGG+GGG 0.588643 2_1:+76903368 Msa0226410:intron
AAAGGGACTATTGATGGTCG+AGG 0.592324 2_1:+76902522 Msa0226410:CDS
GGAGAGAGCCCTAATACTGA+TGG 0.597997 2_1:+76903004 Msa0226410:CDS
TCTCTCCAGGAGCAATTAGA+CGG 0.599323 2_1:-76902988 None:intergenic
TCCATGAGCATTATGGCAGA+AGG 0.604867 2_1:-76904062 None:intergenic
ATAACATGTGGTCCAGGACA+TGG 0.613113 2_1:+76903230 Msa0226410:CDS
TGAGTGATGTAACATATAGA+GGG 0.613324 2_1:+76903915 Msa0226410:CDS
CTGAGGCCAATAGCTTTCCG+TGG 0.613352 2_1:+76901334 Msa0226410:CDS
TGGTGGAAACAACCTTGCAT+AGG 0.613636 2_1:+76902552 Msa0226410:CDS
CAGGATCCCAAATAAACACA+TGG 0.616392 2_1:+76902460 Msa0226410:CDS
AATTAGATTTGCATGGACCA+CGG 0.624578 2_1:-76901351 None:intergenic
TACTACTTACTGTTGGTGGA+CGG 0.626963 2_1:-76902728 None:intergenic
AAAATAACTGCTATAACATG+TGG 0.629212 2_1:+76903218 Msa0226410:CDS
TTGAACTGCGACCAAAATGT+GGG 0.634447 2_1:+76903974 Msa0226410:CDS
AAGCACTTGAATGTCTCTTG+AGG 0.634460 2_1:-76903041 None:intergenic
GCTCAAGTAGCTAGCTACCT+CGG 0.636157 2_1:+76904120 Msa0226410:exon
AAAATTGGTCAATCATAATG+GGG 0.641528 2_1:-76903729 None:intergenic
GTTGTAGCATTGGATCATTG+GGG 0.669066 2_1:+76903367 Msa0226410:intron
TGGAGACACCGATATTGTAG+AGG 0.670467 2_1:+76903395 Msa0226410:CDS
TGGAACATCATTAACAGACA+AGG 0.670604 2_1:+76903943 Msa0226410:CDS
CAGCCAAGACATTCTTACTG+AGG 0.677474 2_1:+76901317 Msa0226410:CDS
TTGATGGTCGAGGCTCTATG+TGG 0.678132 2_1:+76902532 Msa0226410:CDS
ATGGTCGAGGCTCTATGTGG+TGG 0.681626 2_1:+76902535 Msa0226410:CDS
AAAGACACGGTAATCGTACA+CGG 0.682275 2_1:-76904251 None:intergenic
TATATTATATGGTAGCTCCG+AGG 0.755322 2_1:-76904137 None:intergenic
TGAACTGCGACCAAAATGTG+GGG 0.756518 2_1:+76903975 Msa0226410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GGAAAAAATAAAATAAAATA+AGG + chr2_1:76901532-76901551 Msa0226410:intron 10.0%
!!! AAATAAAATAAGGTATTAAA+AGG + chr2_1:76901542-76901561 Msa0226410:intron 10.0%
!!! TTTTTTTTTTTGTTAAATCA+AGG - chr2_1:76902136-76902155 None:intergenic 10.0%
!! GATTTAACAAAAAAAAAAAA+TGG + chr2_1:76902137-76902156 Msa0226410:intron 10.0%
!! TACATATAAAAATTTACTTA+CGG - chr2_1:76902589-76902608 None:intergenic 10.0%
!!! AATAAGTATTTTCTTAATTA+AGG - chr2_1:76903340-76903359 None:intergenic 10.0%
!!! TTTTATCATTTTTCACATTA+TGG + chr2_1:76900880-76900899 Msa0226410:intron 15.0%
!! AGCATATACTTTAAATTATT+AGG - chr2_1:76901212-76901231 None:intergenic 15.0%
!!! TGCTATAATATTTTTTCAAT+AGG + chr2_1:76901228-76901247 Msa0226410:intron 15.0%
!! TAAATATAATTAGATTTGCA+TGG - chr2_1:76901361-76901380 None:intergenic 15.0%
!! ATCTAATTATATTTACATTG+AGG + chr2_1:76901366-76901385 Msa0226410:CDS 15.0%
!! AAAAATACTTTGGTAAATTA+AGG - chr2_1:76902086-76902105 None:intergenic 15.0%
!!! TTTACCAAAGTATTTTTAAA+TGG + chr2_1:76902089-76902108 Msa0226410:intron 15.0%
!! ATATCCATTTAAAAATACTT+TGG - chr2_1:76902096-76902115 None:intergenic 15.0%
!! TAAAATAAAATAATCCACAA+AGG + chr2_1:76902316-76902335 Msa0226410:intron 15.0%
!! ACATATAAAAATTTACTTAC+GGG - chr2_1:76902588-76902607 None:intergenic 15.0%
!! ATTGTATCTAATCATATTAT+AGG + chr2_1:76903155-76903174 Msa0226410:intron 15.0%
!!! TTTCACTTATACTATAATTT+TGG + chr2_1:76903569-76903588 Msa0226410:intron 15.0%
!! TTTGATTAACACAATAAAAT+TGG - chr2_1:76903747-76903766 None:intergenic 15.0%
!!! ATTTTATTGTGTTAATCAAA+TGG + chr2_1:76903747-76903766 Msa0226410:CDS 15.0%
!! ATAAAATGTTAATTTCATGC+AGG + chr2_1:76900970-76900989 Msa0226410:intron 20.0%
!! ATTCTAAGTATGTTTAAACT+CGG + chr2_1:76901016-76901035 Msa0226410:CDS 20.0%
!!! TATTTTATTTTTTCCGTTGA+AGG - chr2_1:76901527-76901546 None:intergenic 20.0%
!!! AAAATAAGGTATTAAAAGGA+TGG + chr2_1:76901546-76901565 Msa0226410:intron 20.0%
!! TTCATTAAAAGTGAATACTT+AGG - chr2_1:76901626-76901645 None:intergenic 20.0%
!!! GTTGATATGTTATTTTGTTT+AGG + chr2_1:76901747-76901766 Msa0226410:intron 20.0%
!! TTAATTGATCTTCACATTAA+TGG - chr2_1:76901819-76901838 None:intergenic 20.0%
!! ATTAATGTGAAGATCAATTA+AGG + chr2_1:76901818-76901837 Msa0226410:intron 20.0%
!! TTAATGTGAAGATCAATTAA+GGG + chr2_1:76901819-76901838 Msa0226410:intron 20.0%
!! GAAAAAACATATGTTATAAG+AGG + chr2_1:76902023-76902042 Msa0226410:intron 20.0%
!!! TAAGAGGTCAAATTTTTAAA+TGG + chr2_1:76902039-76902058 Msa0226410:intron 20.0%
!! CAAGTAGTAAAATTCATTAA+AGG + chr2_1:76902253-76902272 Msa0226410:intron 20.0%
!! AATAACGAAATACTTTACAA+TGG + chr2_1:76902280-76902299 Msa0226410:intron 20.0%
!!! ATTTTTTTCTTTCCTTTTTC+AGG + chr2_1:76902695-76902714 Msa0226410:intron 20.0%
!!! TTTTTTTCTTTCCTTTTTCA+GGG + chr2_1:76902696-76902715 Msa0226410:intron 20.0%
!! AAAATAAATACCAGTTCATA+TGG - chr2_1:76902834-76902853 None:intergenic 20.0%
!!! TATTTATTTTTGTGTGTGTA+TGG + chr2_1:76902844-76902863 Msa0226410:intron 20.0%
!!! ATTTTAATTTGTTGTAGCAT+TGG + chr2_1:76903357-76903376 Msa0226410:intron 20.0%
!! ACCAAAATAACTAACATTAT+TGG + chr2_1:76903497-76903516 Msa0226410:intron 20.0%
!!! ACCAATAATGTTAGTTATTT+TGG - chr2_1:76903501-76903520 None:intergenic 20.0%
!! TAAAATTGGTCAATCATAAT+GGG - chr2_1:76903733-76903752 None:intergenic 20.0%
!! ATAAAATTGGTCAATCATAA+TGG - chr2_1:76903734-76903753 None:intergenic 20.0%
!! AGTAACATACATAAGAAAAA+TGG - chr2_1:76903811-76903830 None:intergenic 20.0%
!! TTCAACTAGCATATATTATA+TGG - chr2_1:76904151-76904170 None:intergenic 20.0%
! ACTTTCAATGTATTGCAATA+TGG + chr2_1:76901055-76901074 Msa0226410:CDS 25.0%
! TTAATTTACAGGAGAATCAT+TGG - chr2_1:76901101-76901120 None:intergenic 25.0%
! AGAGATCATAGTTAATTTAC+AGG - chr2_1:76901112-76901131 None:intergenic 25.0%
! AATACTTAGGATCAATGATA+TGG - chr2_1:76901613-76901632 None:intergenic 25.0%
! AAAATAACATATCAACCACA+AGG - chr2_1:76901743-76901762 None:intergenic 25.0%
! AAAAATGGTATAACAATCCA+TGG + chr2_1:76902152-76902171 Msa0226410:intron 25.0%
! ATGATAACATCAAAGATTGA+TGG - chr2_1:76902178-76902197 None:intergenic 25.0%
!! GAATTTTACTACTTGTCTAA+AGG - chr2_1:76902248-76902267 None:intergenic 25.0%
!!! GAATATTCCGATTTTGTTTT+AGG - chr2_1:76902441-76902460 None:intergenic 25.0%
! AAAACAAAATCGGAATATTC+AGG + chr2_1:76902441-76902460 Msa0226410:CDS 25.0%
! GTTTGATTATAAGTGGAAAA+GGG + chr2_1:76902505-76902524 Msa0226410:CDS 25.0%
! TATAAAAATTTACTTACGGG+TGG - chr2_1:76902585-76902604 None:intergenic 25.0%
! TGATGCAAGTATTACTATAA+AGG - chr2_1:76902666-76902685 None:intergenic 25.0%
!!! TTTTTTCTTTCCTTTTTCAG+GGG + chr2_1:76902697-76902716 Msa0226410:intron 25.0%
!! TCTATAGTATGTATTTTGCA+AGG - chr2_1:76902771-76902790 None:intergenic 25.0%
!!! TGCTATCGATTTCAAATAAA+AGG + chr2_1:76902893-76902912 Msa0226410:CDS 25.0%
! AAAATAACTGCTATAACATG+TGG + chr2_1:76903218-76903237 Msa0226410:CDS 25.0%
! GCTAAAGAAATTAATACTCA+TGG - chr2_1:76903532-76903551 None:intergenic 25.0%
! TTTCTATTGTAATTCTGAAC+AGG + chr2_1:76903645-76903664 Msa0226410:intron 25.0%
! TTCTATTGTAATTCTGAACA+GGG + chr2_1:76903646-76903665 Msa0226410:intron 25.0%
! AAAATTGGTCAATCATAATG+GGG - chr2_1:76903732-76903751 None:intergenic 25.0%
!!! ATCTTTTTTTCTTCTTCCTT+TGG + chr2_1:76904172-76904191 Msa0226410:three_prime_UTR 25.0%
CACAACAATGTTTCATACAA+TGG + chr2_1:76900842-76900861 Msa0226410:exon 30.0%
CAATGTTTCATACAATGGTT+AGG + chr2_1:76900847-76900866 Msa0226410:intron 30.0%
! ACCTCATCAAGTGAAAATTT+TGG + chr2_1:76901426-76901445 Msa0226410:intron 30.0%
! TCCAAAATTTTCACTTGATG+AGG - chr2_1:76901430-76901449 None:intergenic 30.0%
!!! CAAGTGAAAATTTTGGAACT+TGG + chr2_1:76901433-76901452 Msa0226410:intron 30.0%
!!! TGAAAATTTTGGAACTTGGT+CGG + chr2_1:76901437-76901456 Msa0226410:intron 30.0%
TTCAACCATAATTCCTTCAA+CGG + chr2_1:76901511-76901530 Msa0226410:intron 30.0%
! TTTTTCCGTTGAAGGAATTA+TGG - chr2_1:76901519-76901538 None:intergenic 30.0%
AACTTAAGACATTGCATAAG+CGG + chr2_1:76901686-76901705 Msa0226410:intron 30.0%
ATTGATCTTCACATTAATGG+TGG - chr2_1:76901816-76901835 None:intergenic 30.0%
TGTTGCACCTAAAACAAAAT+CGG + chr2_1:76902431-76902450 Msa0226410:CDS 30.0%
ACCAATCCATGTGTTTATTT+GGG - chr2_1:76902469-76902488 None:intergenic 30.0%
AACCAATCCATGTGTTTATT+TGG - chr2_1:76902470-76902489 None:intergenic 30.0%
! ATTGGTTTCTCATTTGTGAA+TGG + chr2_1:76902483-76902502 Msa0226410:CDS 30.0%
GTGAATGGTTTGATTATAAG+TGG + chr2_1:76902498-76902517 Msa0226410:CDS 30.0%
GGTTTGATTATAAGTGGAAA+AGG + chr2_1:76902504-76902523 Msa0226410:CDS 30.0%
TATCAATGCCATCAGTATTA+GGG - chr2_1:76903015-76903034 None:intergenic 30.0%
ATATCAATGCCATCAGTATT+AGG - chr2_1:76903016-76903035 None:intergenic 30.0%
TCTTTAGCACTACTACTATA+AGG + chr2_1:76903544-76903563 Msa0226410:intron 30.0%
!! TAATTTTGGTCACATGACTT+AGG + chr2_1:76903583-76903602 Msa0226410:intron 30.0%
TGAGTGATGTAACATATAGA+GGG + chr2_1:76903915-76903934 Msa0226410:CDS 30.0%
CATAAACACGATCAAATACA+AGG - chr2_1:76904009-76904028 None:intergenic 30.0%
TGCAACTATTATGATTCCAA+AGG - chr2_1:76904191-76904210 None:intergenic 30.0%
!! CATTGTTGTGCTTTAGAACA+AGG - chr2_1:76900832-76900851 None:intergenic 35.0%
!!! ACATGCAGAAGAGTATTTTG+AGG - chr2_1:76901153-76901172 None:intergenic 35.0%
!! AATAGGCTTTTCTGAAAGCA+TGG + chr2_1:76901245-76901264 Msa0226410:intron 35.0%
AATTAGATTTGCATGGACCA+CGG - chr2_1:76901354-76901373 None:intergenic 35.0%
TGTCTTAAGTTCAAACGTTG+TGG - chr2_1:76901677-76901696 None:intergenic 35.0%
TATCAACCACAAGGTTACAT+TGG - chr2_1:76901734-76901753 None:intergenic 35.0%
! GGTAAATTAAGGTATCTTCG+AGG - chr2_1:76902075-76902094 None:intergenic 35.0%
! TTTTGTGAACTCAGCTTTCA+GGG + chr2_1:76902403-76902422 Msa0226410:intron 35.0%
TCCCAAATAAACACATGGAT+TGG + chr2_1:76902465-76902484 Msa0226410:CDS 35.0%
AAAAATTTACTTACGGGTGG+TGG - chr2_1:76902582-76902601 None:intergenic 35.0%
TTGTGTGTGTATGGATGTAT+AGG + chr2_1:76902853-76902872 Msa0226410:intron 35.0%
!! TGCAGCTTGTTAGAGTTATA+TGG - chr2_1:76902946-76902965 None:intergenic 35.0%
AACTCTAACAAGCTGCAAAA+AGG + chr2_1:76902949-76902968 Msa0226410:CDS 35.0%
ACTCTAACAAGCTGCAAAAA+GGG + chr2_1:76902950-76902969 Msa0226410:CDS 35.0%
CTTAACTCTTTCATTGCAAC+TGG + chr2_1:76903061-76903080 Msa0226410:CDS 35.0%
! TTGTTGTAGCATTGGATCAT+TGG + chr2_1:76903365-76903384 Msa0226410:intron 35.0%
! TGTTGTAGCATTGGATCATT+GGG + chr2_1:76903366-76903385 Msa0226410:intron 35.0%
ATGCACATCCTCTACAATAT+CGG - chr2_1:76903406-76903425 None:intergenic 35.0%
! ACGTTGACTGAAACATTAAC+TGG + chr2_1:76903438-76903457 Msa0226410:CDS 35.0%
AGTAAGAATCAAGACAAAGC+AGG + chr2_1:76903461-76903480 Msa0226410:CDS 35.0%
TATTGTAATTCTGAACAGGG+TGG + chr2_1:76903649-76903668 Msa0226410:intron 35.0%
! GTCAATCATAATGGGGTTAT+GGG - chr2_1:76903725-76903744 None:intergenic 35.0%
TCAAATGGTCTGCAAAAACA+TGG + chr2_1:76903762-76903781 Msa0226410:CDS 35.0%
TGTTACATCACTCACTTTGA+TGG - chr2_1:76903909-76903928 None:intergenic 35.0%
GTGAGTGATGTAACATATAG+AGG + chr2_1:76903914-76903933 Msa0226410:CDS 35.0%
GTAACATATAGAGGGATTAG+TGG + chr2_1:76903923-76903942 Msa0226410:CDS 35.0%
TGGAACATCATTAACAGACA+AGG + chr2_1:76903943-76903962 Msa0226410:CDS 35.0%
AAGGAGAAAACCTTCATCTT+AGG - chr2_1:76904046-76904065 None:intergenic 35.0%
! CAAGCAGTTTAGAATTGGTT+TGG - chr2_1:76904101-76904120 None:intergenic 35.0%
! TTGAGCAAGCAGTTTAGAAT+TGG - chr2_1:76904106-76904125 None:intergenic 35.0%
TATATTATATGGTAGCTCCG+AGG - chr2_1:76904140-76904159 None:intergenic 35.0%
GTATTGCAATATGGAGCAGT+TGG + chr2_1:76901064-76901083 Msa0226410:CDS 40.0%
GATGTGTGTCAAAGCAAATC+AGG + chr2_1:76901271-76901290 Msa0226410:CDS 40.0%
!!! AAATTTTGGAACTTGGTCGG+TGG + chr2_1:76901440-76901459 Msa0226410:intron 40.0%
AGAAATGTGGTTGAGAGAAG+AGG - chr2_1:76901649-76901668 None:intergenic 40.0%
CGTTGTGGATGAAAGAAATG+TGG - chr2_1:76901662-76901681 None:intergenic 40.0%
GGTCTGAGTAGAACTATACT+TGG - chr2_1:76901713-76901732 None:intergenic 40.0%
! ACATGATAGTGTGACACAAG+TGG + chr2_1:76901941-76901960 Msa0226410:intron 40.0%
! ACATCAAAGATTGATGGCCA+TGG - chr2_1:76902172-76902191 None:intergenic 40.0%
! CTTTTGTGAACTCAGCTTTC+AGG + chr2_1:76902402-76902421 Msa0226410:intron 40.0%
CAGGATCCCAAATAAACACA+TGG + chr2_1:76902460-76902479 Msa0226410:CDS 40.0%
AGTGGAAAAGGGACTATTGA+TGG + chr2_1:76902516-76902535 Msa0226410:CDS 40.0%
! TACTACTTACTGTTGGTGGA+CGG - chr2_1:76902731-76902750 None:intergenic 40.0%
TAGGTACTACTTACTGTTGG+TGG - chr2_1:76902735-76902754 None:intergenic 40.0%
GAGTAGGTACTACTTACTGT+TGG - chr2_1:76902738-76902757 None:intergenic 40.0%
GCAAGGATCAATACAAGAGT+AGG - chr2_1:76902754-76902773 None:intergenic 40.0%
CTGTTACGTACCATATGAAC+TGG + chr2_1:76902821-76902840 Msa0226410:intron 40.0%
AGAGTTATATGGCTTCTTGC+TGG - chr2_1:76902935-76902954 None:intergenic 40.0%
AAGCACTTGAATGTCTCTTG+AGG - chr2_1:76903044-76903063 None:intergenic 40.0%
! GATTGCATTGCTATTAGTGC+TGG + chr2_1:76903182-76903201 Msa0226410:CDS 40.0%
! GTTGTAGCATTGGATCATTG+GGG + chr2_1:76903367-76903386 Msa0226410:intron 40.0%
! TTGTAGCATTGGATCATTGG+GGG + chr2_1:76903368-76903387 Msa0226410:intron 40.0%
! GGTCAATCATAATGGGGTTA+TGG - chr2_1:76903726-76903745 None:intergenic 40.0%
TTTGAACTGCGACCAAAATG+TGG + chr2_1:76903973-76903992 Msa0226410:CDS 40.0%
TTGAACTGCGACCAAAATGT+GGG + chr2_1:76903974-76903993 Msa0226410:CDS 40.0%
ATCTGCTGTTCCTAAGATGA+AGG + chr2_1:76904033-76904052 Msa0226410:CDS 40.0%
!! TAGAATTGGTTTGGTGTGTG+AGG - chr2_1:76904092-76904111 None:intergenic 40.0%
CAATATGGAGCAGTTGGAGA+TGG + chr2_1:76901070-76901089 Msa0226410:CDS 45.0%
AGTAAGAATGTCTTGGCTGC+TGG - chr2_1:76901316-76901335 None:intergenic 45.0%
CAGCCAAGACATTCTTACTG+AGG + chr2_1:76901317-76901336 Msa0226410:CDS 45.0%
TGGCCTCAGTAAGAATGTCT+TGG - chr2_1:76901323-76901342 None:intergenic 45.0%
CTCAGACCAATGTAACCTTG+TGG + chr2_1:76901725-76901744 Msa0226410:intron 45.0%
! TGATAGTGTGACACAAGTGG+TGG + chr2_1:76901944-76901963 Msa0226410:intron 45.0%
GATAGTGTGACACAAGTGGT+GGG + chr2_1:76901945-76901964 Msa0226410:intron 45.0%
CTAGAGACTGTTCTCCTTTG+TGG - chr2_1:76902333-76902352 None:intergenic 45.0%
! AAAGGGACTATTGATGGTCG+AGG + chr2_1:76902522-76902541 Msa0226410:CDS 45.0%
TGGTGGAAACAACCTTGCAT+AGG + chr2_1:76902552-76902571 Msa0226410:CDS 45.0%
AACATCCGTCTAATTGCTCC+TGG + chr2_1:76902983-76903002 Msa0226410:CDS 45.0%
TCTCTCCAGGAGCAATTAGA+CGG - chr2_1:76902991-76903010 None:intergenic 45.0%
ACTGCTATAACATGTGGTCC+AGG + chr2_1:76903224-76903243 Msa0226410:CDS 45.0%
ATAACATGTGGTCCAGGACA+TGG + chr2_1:76903230-76903249 Msa0226410:CDS 45.0%
ACTAACCTGATACCATGTCC+TGG - chr2_1:76903245-76903264 None:intergenic 45.0%
TGGAGACACCGATATTGTAG+AGG + chr2_1:76903395-76903414 Msa0226410:CDS 45.0%
TGTAATTCTGAACAGGGTGG+AGG + chr2_1:76903652-76903671 Msa0226410:intron 45.0%
TGAACTGCGACCAAAATGTG+GGG + chr2_1:76903975-76903994 Msa0226410:CDS 45.0%
TCCTTCTGCCATAATGCTCA+TGG + chr2_1:76904061-76904080 Msa0226410:CDS 45.0%
TCCATGAGCATTATGGCAGA+AGG - chr2_1:76904065-76904084 None:intergenic 45.0%
AGGCTCTTCCATGAGCATTA+TGG - chr2_1:76904072-76904091 None:intergenic 45.0%
!!! GAAAATTAATTTATTTTTTA+GGG - chr2_1:76903834-76903853 None:intergenic 5.0%
!!! AGAAAATTAATTTATTTTTT+AGG - chr2_1:76903835-76903854 None:intergenic 5.0%
CATGGACCACGGAAAGCTAT+TGG - chr2_1:76901343-76901362 None:intergenic 50.0%
! TTGATGGTCGAGGCTCTATG+TGG + chr2_1:76902532-76902551 Msa0226410:CDS 50.0%
!! GGTGGTGGATTTCCTATGCA+AGG - chr2_1:76902567-76902586 None:intergenic 50.0%
GGCAACTTGTCCCCTGAAAA+AGG - chr2_1:76902710-76902729 None:intergenic 50.0%
TCAGTATTAGGGCTCTCTCC+AGG - chr2_1:76903004-76903023 None:intergenic 50.0%
GGAGAGAGCCCTAATACTGA+TGG + chr2_1:76903004-76903023 Msa0226410:CDS 50.0%
AATTCTGAACAGGGTGGAGG+TGG + chr2_1:76903655-76903674 Msa0226410:intron 50.0%
!! GGTTAGAGCACCCCACATTT+TGG - chr2_1:76903988-76904007 None:intergenic 50.0%
GCTCAAGTAGCTAGCTACCT+CGG + chr2_1:76904120-76904139 Msa0226410:exon 50.0%
CTGAGGCCAATAGCTTTCCG+TGG + chr2_1:76901334-76901353 Msa0226410:CDS 55.0%
ATGGTCGAGGCTCTATGTGG+TGG + chr2_1:76902535-76902554 Msa0226410:CDS 55.0%
GTGGTCCAGGACATGGTATC+AGG + chr2_1:76903237-76903256 Msa0226410:CDS 55.0%
! ATTGGATCATTGGGGGCACG+TGG + chr2_1:76903375-76903394 Msa0226410:CDS 55.0%
! AGGGTGGAGGTGGATTTGCT+AGG + chr2_1:76903665-76903684 Msa0226410:intron 55.0%
!! GTGGAGGTGGATTTGCTAGG+AGG + chr2_1:76903668-76903687 Msa0226410:CDS 55.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 76900821 76904266 76900821 ID=Msa0226410;Name=Msa0226410
chr2_1 mRNA 76900821 76904266 76900821 ID=Msa0226410-mRNA-1;Parent=Msa0226410;Name=Msa0226410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=28|1|1|1|0.88|0.9|10|137|404
chr2_1 exon 76900821 76900863 76900821 ID=Msa0226410-mRNA-1:exon:23284;Parent=Msa0226410-mRNA-1
chr2_1 exon 76900992 76901111 76900992 ID=Msa0226410-mRNA-1:exon:23285;Parent=Msa0226410-mRNA-1
chr2_1 exon 76901250 76901387 76901250 ID=Msa0226410-mRNA-1:exon:23286;Parent=Msa0226410-mRNA-1
chr2_1 exon 76902417 76902587 76902417 ID=Msa0226410-mRNA-1:exon:23287;Parent=Msa0226410-mRNA-1
chr2_1 exon 76902717 76902740 76902717 ID=Msa0226410-mRNA-1:exon:23288;Parent=Msa0226410-mRNA-1
chr2_1 exon 76902875 76903082 76902875 ID=Msa0226410-mRNA-1:exon:23289;Parent=Msa0226410-mRNA-1
chr2_1 exon 76903177 76903258 76903177 ID=Msa0226410-mRNA-1:exon:23290;Parent=Msa0226410-mRNA-1
chr2_1 exon 76903374 76903482 76903374 ID=Msa0226410-mRNA-1:exon:23291;Parent=Msa0226410-mRNA-1
chr2_1 exon 76903667 76903783 76903667 ID=Msa0226410-mRNA-1:exon:23292;Parent=Msa0226410-mRNA-1
chr2_1 exon 76903899 76904266 76903899 ID=Msa0226410-mRNA-1:exon:23293;Parent=Msa0226410-mRNA-1
chr2_1 five_prime_UTR 76900821 76900848 76900821 ID=Msa0226410-mRNA-1:five_prime_utr;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76900849 76900863 76900849 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76900992 76901111 76900992 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76901250 76901387 76901250 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76902417 76902587 76902417 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76902717 76902740 76902717 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76902875 76903082 76902875 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76903177 76903258 76903177 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76903374 76903482 76903374 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76903667 76903783 76903667 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 CDS 76903899 76904129 76903899 ID=Msa0226410-mRNA-1:cds;Parent=Msa0226410-mRNA-1
chr2_1 three_prime_UTR 76904130 76904266 76904130 ID=Msa0226410-mRNA-1:three_prime_utr;Parent=Msa0226410-mRNA-1
Gene Sequence

>Msa0226410

ATGTTTCATACAATGGAGTGTTTTTTCACATTGTTAATGATTCTAAGTATGTTTAAACTCGGATTGAGTAGCACAACAACTTTCAATGTATTGCAATATGGAGCAGTTGGAGATGGAAAAACCAATGATTCTCCTGCTTTTCTGAAAGCATGGAAAGATGTGTGTCAAAGCAAATCAGGCACATCTCGTCTCATCATACCAGCAGCCAAGACATTCTTACTGAGGCCAATAGCTTTCCGTGGTCCATGCAAATCTAATTATATTTACATTGAGCTTTCAGGGAATATTGTTGCACCTAAAACAAAATCGGAATATTCAGGATCCCAAATAAACACATGGATTGGTTTCTCATTTGTGAATGGTTTGATTATAAGTGGAAAAGGGACTATTGATGGTCGAGGCTCTATGTGGTGGAAACAACCTTGCATAGGAAATCCACCACCCGGGACAAGTTGCCGTCCACCAACAGCAATAACATTGAATAGATGCTATCGATTTCAAATAAAAGGATATACAAGTGTTAATCCAGCAAGAAGCCATATAACTCTAACAAGCTGCAAAAAGGGCATTATCTCTAACATCCGTCTAATTGCTCCTGGAGAGAGCCCTAATACTGATGGCATTGATATTTCTGCCTCAAGAGACATTCAAGTGCTTAACTCTTTCATTGCAACTGGTGATGATTGCATTGCTATTAGTGCTGGATCATCAGTAATCAAAATAACTGCTATAACATGTGGTCCAGGACATGGTATCAGCATTGGATCATTGGGGGCACGTGGAGACACCGATATTGTAGAGGATGTGCATGTGAAGAATTGTACGTTGACTGAAACATTAACTGGAGTAAGAATCAAGACAAAGCAGGGTGGAGGTGGATTTGCTAGGAGGATCACGTTTGAAAATATTAGATTTGTTCGAGCCCATAACCCCATTATGATTGACCAATTTTATTGTGTTAATCAAATGGTCTGCAAAAACATGACTAAAGCCATCAAAGTGAGTGATGTAACATATAGAGGGATTAGTGGAACATCATTAACAGACAAGGCAATAAATTTGAACTGCGACCAAAATGTGGGGTGCTCTAACCTTGTATTTGATCGTGTTTATGTAAGATCTGCTGTTCCTAAGATGAAGGTTTTCTCCTTCTGCCATAATGCTCATGGAAGAGCCTCACACACCAAACCAATTCTAAACTGCTTGCTCAAGTAG
Protein sequence

>Msa0226410

MFHTMECFFTLLMILSMFKLGLSSTTTFNVLQYGAVGDGKTNDSPAFLKAWKDVCQSKSGTSRLIIPAAKTFLLRPIAFRGPCKSNYIYIELSGNIVAPKTKSEYSGSQINTWIGFSFVNGLIISGKGTIDGRGSMWWKQPCIGNPPPGTSCRPPTAITLNRCYRFQIKGYTSVNPARSHITLTSCKKGIISNIRLIAPGESPNTDGIDISASRDIQVLNSFIATGDDCIAISAGSSVIKITAITCGPGHGISIGSLGARGDTDIVEDVHVKNCTLTETLTGVRIKTKQGGGGFARRITFENIRFVRAHNPIMIDQFYCVNQMVCKNMTKAIKVSDVTYRGISGTSLTDKAINLNCDQNVGCSNLVFDRVYVRSAVPKMKVFSFCHNAHGRASHTKPILNCLLK*