AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0676570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0676570 MtrunA17_Chr4g0020051 97.778 360 7 1 1 360 1 359 0.0 719
Msa0676570 MtrunA17_Chr4g0041341 40.741 216 121 2 144 352 227 442 1.72e-41 150
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0676570 AT3G63490.1 65.439 353 101 7 13 356 1 341 7.51e-157 444
Msa0676570 AT3G63490.2 58.923 297 98 8 13 300 1 282 3.10e-103 306
Msa0676570 AT2G42710.1 42.326 215 118 2 144 352 188 402 1.50e-51 177

Find 114 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTTGATCATTATATTT+AGG 0.131759 4_4:-27490563 None:intergenic
TATTGATTTAGTCAGCTTTA+TGG 0.187625 4_4:+27493675 Msa0676570:three_prime_UTR
TTCATTATATTATCTATCTA+TGG 0.274152 4_4:+27493878 Msa0676570:three_prime_UTR
GGAATCGTTCACTTGCCTTT+TGG 0.287837 4_4:+27493368 Msa0676570:CDS
ACTGTTGATCATTATATTTA+GGG 0.290232 4_4:-27490562 None:intergenic
GGGAGAGAGGAAGAAGGTTC+TGG 0.298442 4_4:-27488153 None:intergenic
ATTGATTTAGTCAGCTTTAT+GGG 0.306238 4_4:+27493676 Msa0676570:three_prime_UTR
CTTGAAGACAGCAATTTCTT+TGG 0.313872 4_4:+27490475 Msa0676570:CDS
ATGAAATTATAGCCCGTTCT+TGG 0.314672 4_4:-27493999 None:intergenic
AGAAGAAGGAGAAAGGTCTT+GGG 0.330843 4_4:-27488117 None:intergenic
CATTACTTCTCAAGAGTGAT+AGG 0.340890 4_4:+27488360 Msa0676570:CDS
AAAACTTGCAGGAGCAGATT+TGG 0.343136 4_4:+27492315 Msa0676570:CDS
GGTCAATGTTGAGGCGGAAA+TGG 0.347628 4_4:-27490541 None:intergenic
GCTGTTACAGTGCCAGCTTT+TGG 0.356409 4_4:-27493137 None:intergenic
GGAGAGAGGAAGAAGGTTCT+GGG 0.357732 4_4:-27488152 None:intergenic
CAGAATAGATCACTTGAATA+TGG 0.363358 4_4:+27493649 Msa0676570:exon
TTCGATGAAGCAAAACTTGC+AGG 0.364692 4_4:+27492304 Msa0676570:CDS
TGCTAGCCTAGGGAAGATTC+TGG 0.368120 4_4:+27493091 Msa0676570:CDS
GAGAAGAAGGAGAAAGGTCT+TGG 0.368226 4_4:-27488118 None:intergenic
GTAAGTCTGCCGAAGGGAAC+TGG 0.379100 4_4:+27490699 Msa0676570:CDS
TACAAGGAAAATCCTCATCT+TGG 0.380572 4_4:-27493824 None:intergenic
AGATAATATAATGAAATCTA+AGG 0.382055 4_4:-27493870 None:intergenic
AATGCAGCTTTCCCTTTCTT+AGG 0.383121 4_4:-27488341 None:intergenic
GGTGAGATCTAAGAGATTCT+TGG 0.384948 4_4:+27490415 Msa0676570:intron
CTATGTTGTGTGCACACTTT+TGG 0.391436 4_4:-27493792 None:intergenic
GGATTTGGCATGAGTCCTCT+TGG 0.392084 4_4:-27493116 None:intergenic
AACACCTTAGGCATCATATC+TGG 0.401176 4_4:-27492406 None:intergenic
GGCTATAGCAGAATTCAAAC+AGG 0.402560 4_4:+27493316 Msa0676570:intron
TTCTACTGTTTCTACAAACT+TGG 0.402665 4_4:-27490516 None:intergenic
GCTAGCCTAGGGAAGATTCT+GGG 0.405793 4_4:+27493092 Msa0676570:CDS
GATCTGATAGAAGAGATAAA+AGG 0.407945 4_4:+27492349 Msa0676570:CDS
TACATATACAGGGATGAGTT+TGG 0.413538 4_4:+27493741 Msa0676570:three_prime_UTR
GTTGTACATGAAGCCATGTT+TGG 0.414703 4_4:-27488038 None:intergenic
GTTACCAAGGTTACATATAC+AGG 0.419332 4_4:+27493730 Msa0676570:three_prime_UTR
AACAGGGAAAAGTTGAATAC+AGG 0.442667 4_4:+27493333 Msa0676570:CDS
CAGCAATGGGGCCTTCAGTC+AGG 0.443694 4_4:+27493589 Msa0676570:CDS
GCGCACATATGCTCAGCAAT+GGG 0.454736 4_4:+27493576 Msa0676570:CDS
AGAGATAAAAGGAGGATACA+TGG 0.455640 4_4:+27492360 Msa0676570:CDS
ATGTGGACCGTGCCAAGAAC+GGG 0.459693 4_4:+27493987 Msa0676570:three_prime_UTR
GTCAATGTTGAGGCGGAAAT+GGG 0.464039 4_4:-27490540 None:intergenic
ACAAGGAAAATCCTCATCTT+GGG 0.467492 4_4:-27493823 None:intergenic
TTGTTTCAGGTTGCTAGCCT+AGG 0.472690 4_4:+27493080 Msa0676570:intron
GAATACAGGGCAGATAAAAC+AGG 0.473583 4_4:+27493347 Msa0676570:CDS
TTCAGTCAGGTTAAATATCA+AGG 0.479582 4_4:+27493602 Msa0676570:CDS
GTTACTACTAAGCCTAAGAA+AGG 0.488925 4_4:+27488329 Msa0676570:CDS
GTTAGATTAACCGACTTAGT+AGG 0.492831 4_4:-27488188 None:intergenic
GTGCACACAACATAGTCCTT+TGG 0.501143 4_4:+27493800 Msa0676570:three_prime_UTR
CGGGTGCGAAAGGTGTGTAC+TGG 0.503896 4_4:+27493547 Msa0676570:CDS
GAGAGTGTGGTGGTGAAAGC+AGG 0.504363 4_4:-27488012 None:intergenic
GGAAAAGAACGGAGAGAAGA+AGG 0.505919 4_4:-27488131 None:intergenic
GAAGAAGGAGAAAGGTCTTG+GGG 0.510778 4_4:-27488116 None:intergenic
TTGTACATGAAGCCATGTTT+GGG 0.512407 4_4:-27488037 None:intergenic
TGGTGAAAGCAGGACATTAG+AGG 0.518128 4_4:-27488002 None:intergenic
TTAATCTAACCTACCAGTCT+AGG 0.519742 4_4:+27488201 Msa0676570:CDS
CATCCCTGTATATGTAACCT+TGG 0.524171 4_4:-27493734 None:intergenic
GTTATCTATTCGTTTGCCGA+TGG 0.524222 4_4:-27487977 None:intergenic
TGCGCACATATGCTCAGCAA+TGG 0.525735 4_4:+27493575 Msa0676570:CDS
TATACAGGGATGAGTTTGGT+TGG 0.530491 4_4:+27493745 Msa0676570:three_prime_UTR
GTAAAATCGAAGACCTAGAC+TGG 0.533354 4_4:-27488214 None:intergenic
TGTTTCAGGTTGCTAGCCTA+GGG 0.533363 4_4:+27493081 Msa0676570:intron
AAATCCTCATCTTGGGCCAA+AGG 0.535268 4_4:-27493816 None:intergenic
CTCATGCCAAATCCAAAAGC+TGG 0.536274 4_4:+27493125 Msa0676570:CDS
TATATTTAGGGTCAATGTTG+AGG 0.541178 4_4:-27490550 None:intergenic
AAGAAGGAGAAAGGTCTTGG+GGG 0.541318 4_4:-27488115 None:intergenic
ATTATAGCCCGTTCTTGGCA+CGG 0.548301 4_4:-27493994 None:intergenic
GCTTCAAAACGAGGGGAGAG+AGG 0.550446 4_4:-27488166 None:intergenic
AACGGAGAGAAGAAGGAGAA+AGG 0.551129 4_4:-27488124 None:intergenic
AACAAACCATCGGGTGCGAA+AGG 0.555511 4_4:+27493537 Msa0676570:CDS
CTGATAGAAGAGATAAAAGG+AGG 0.556066 4_4:+27492352 Msa0676570:CDS
CCACACTCTCTTCCCAAACA+TGG 0.557526 4_4:+27488025 Msa0676570:CDS
TTGGCCCCAGAATCTTCCCT+AGG 0.558256 4_4:-27493097 None:intergenic
GTAGAGGCAAACAAACCATC+GGG 0.559336 4_4:+27493528 Msa0676570:CDS
TATGTGGACCGTGCCAAGAA+CGG 0.559425 4_4:+27493986 Msa0676570:three_prime_UTR
AAAATAGCCGTTCTTACTCA+AGG 0.563803 4_4:+27490732 Msa0676570:CDS
AGCAGATTTGGTAGGTGGAG+AGG 0.564195 4_4:+27492327 Msa0676570:CDS
TACACACCTTTCGCACCCGA+TGG 0.566838 4_4:-27493543 None:intergenic
TTCTCCAGATATGATGCCTA+AGG 0.567948 4_4:+27492402 Msa0676570:CDS
TAGTCCTTTGGCCCAAGATG+AGG 0.571677 4_4:+27493812 Msa0676570:three_prime_UTR
AACGAGGGGAGAGAGGAAGA+AGG 0.573710 4_4:-27488159 None:intergenic
GAGAAGGATGGTGTTGATGA+TGG 0.575832 4_4:+27488284 Msa0676570:CDS
ATTACTTCTCAAGAGTGATA+GGG 0.582083 4_4:+27488361 Msa0676570:CDS
ATAATCACCTTGAGTAAGAA+CGG 0.583105 4_4:-27490739 None:intergenic
TTGATATTTAACCTGACTGA+AGG 0.584092 4_4:-27493600 None:intergenic
TTACTACTAAGCCTAAGAAA+GGG 0.585009 4_4:+27488330 Msa0676570:CDS
AGTAGAGGCAAACAAACCAT+CGG 0.588958 4_4:+27493527 Msa0676570:CDS
GCAGGAGCAGATTTGGTAGG+TGG 0.594774 4_4:+27492322 Msa0676570:CDS
AACTGTTGATGAAGATGAGA+AGG 0.595375 4_4:+27488268 Msa0676570:CDS
CTTGCAGGAGCAGATTTGGT+AGG 0.596280 4_4:+27492319 Msa0676570:CDS
GGGGTGAGAATAGAAGAAGA+GGG 0.598380 4_4:-27488095 None:intergenic
TGTAACAGCTAATATTACTC+AGG 0.602046 4_4:+27493151 Msa0676570:CDS
TTAATAGGTAAGTCTGCCGA+AGG 0.603199 4_4:+27490692 Msa0676570:intron
ACTTAGTAGGCTTCAAAACG+AGG 0.603839 4_4:-27488175 None:intergenic
ACAGGGAAAAGTTGAATACA+GGG 0.604006 4_4:+27493334 Msa0676570:CDS
AATCGAAGACCTAGACTGGT+AGG 0.609515 4_4:-27488210 None:intergenic
GGGTGAGAATAGAAGAAGAG+GGG 0.614380 4_4:-27488094 None:intergenic
AGAAGGAGAAAGGTCTTGGG+GGG 0.616732 4_4:-27488114 None:intergenic
CTAGCCTAGGGAAGATTCTG+GGG 0.617778 4_4:+27493093 Msa0676570:CDS
TACAAAGTAATAATAATACA+AGG 0.623495 4_4:-27493840 None:intergenic
CTTGTCAAAAGATGTTACCA+AGG 0.627029 4_4:+27493717 Msa0676570:three_prime_UTR
AGAAGGTTCTGGGAAAAGAA+CGG 0.632360 4_4:-27488142 None:intergenic
ATTTAGGGTCAATGTTGAGG+CGG 0.636560 4_4:-27490547 None:intergenic
GGGAAGATTCTGGGGCCAAG+AGG 0.638508 4_4:+27493101 Msa0676570:CDS
CCATGTTTGGGAAGAGAGTG+TGG 0.639849 4_4:-27488025 None:intergenic
TAATTTGCAGAAATCAGTAG+AGG 0.640381 4_4:+27493512 Msa0676570:intron
CTTAGTAGGCTTCAAAACGA+GGG 0.651809 4_4:-27488174 None:intergenic
AGCAACATCAGCAGTGACAG+CGG 0.657412 4_4:-27488243 None:intergenic
GTTGATGAAGATGAGAAGGA+TGG 0.658305 4_4:+27488272 Msa0676570:CDS
TTAGTAGGCTTCAAAACGAG+GGG 0.672051 4_4:-27488173 None:intergenic
CGCACATATGCTCAGCAATG+GGG 0.673772 4_4:+27493577 Msa0676570:CDS
TTACCAAGGTTACATATACA+GGG 0.678915 4_4:+27493731 Msa0676570:three_prime_UTR
TAATAGGTAAGTCTGCCGAA+GGG 0.688585 4_4:+27490693 Msa0676570:intron
TGAAAGCAGGACATTAGAGG+TGG 0.695588 4_4:-27487999 None:intergenic
GCTATAGCAGAATTCAAACA+GGG 0.697806 4_4:+27493317 Msa0676570:CDS
TGTTTGGGAAGAGAGTGTGG+TGG 0.778971 4_4:-27488022 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTGTTGATTTTTTTTTT+TGG + chr4_4:27488428-27488447 Msa0676570:intron 10.0%
!! ATAATTTCATAAAATATACA+TGG + chr4_4:27490013-27490032 Msa0676570:intron 10.0%
!! ACAATTATTCATAAAATAAA+TGG - chr4_4:27490370-27490389 None:intergenic 10.0%
!! CAATACATATAATTAAAAAA+AGG - chr4_4:27491463-27491482 None:intergenic 10.0%
!! TAACAAATTATCTAGAAAAT+TGG - chr4_4:27488810-27488829 None:intergenic 15.0%
!!! AAAAAAACATTTTCTTGTAA+AGG + chr4_4:27490815-27490834 Msa0676570:intron 15.0%
!!! AAAAAACATTTTCTTGTAAA+GGG + chr4_4:27490816-27490835 Msa0676570:intron 15.0%
!!! ATGTCCATATATTTTTAAAA+TGG + chr4_4:27491270-27491289 Msa0676570:intron 15.0%
!!! ACAACCATTTTAAAAATATA+TGG - chr4_4:27491277-27491296 None:intergenic 15.0%
!! AAAAAATATTAGTTAGAATG+AGG + chr4_4:27491602-27491621 Msa0676570:intron 15.0%
!! AAAATAAAAAAAATACAGCA+AGG - chr4_4:27491775-27491794 None:intergenic 15.0%
!! ATTAGATTGAACATTAAATT+GGG + chr4_4:27491957-27491976 Msa0676570:intron 15.0%
!! TAAAGTTAAACAATATAAAG+TGG + chr4_4:27492023-27492042 Msa0676570:intron 15.0%
!!! TGTTTTTAGCATTTATTATT+TGG + chr4_4:27493028-27493047 Msa0676570:intron 15.0%
!!! TACATTTTGATAAAAAGAAA+AGG - chr4_4:27493261-27493280 None:intergenic 15.0%
!! TACAAAGTAATAATAATACA+AGG - chr4_4:27493843-27493862 None:intergenic 15.0%
!! AGATAATATAATGAAATCTA+AGG - chr4_4:27493873-27493892 None:intergenic 15.0%
!! TTCATTATATTATCTATCTA+TGG + chr4_4:27493878-27493897 Msa0676570:three_prime_UTR 15.0%
!!! TTATTGTTTTCTTGTTTTTC+TGG + chr4_4:27488400-27488419 Msa0676570:intron 20.0%
!!! ATTTTTTTTTTTGGTCAAGT+GGG + chr4_4:27488437-27488456 Msa0676570:intron 20.0%
!!! AATTTTAATAACTACAGTTG+TGG + chr4_4:27488469-27488488 Msa0676570:intron 20.0%
!!! CAATCGATGTAAATATTTTA+CGG + chr4_4:27489223-27489242 Msa0676570:intron 20.0%
!! TTTATAATGAACCCAAATTA+CGG + chr4_4:27489309-27489328 Msa0676570:intron 20.0%
!! AAATTATTGCATATAATGGT+AGG - chr4_4:27490201-27490220 None:intergenic 20.0%
!!! ATCATTGAATTTTTCATGTT+TGG + chr4_4:27490333-27490352 Msa0676570:intron 20.0%
!! ACTGTTGATCATTATATTTA+GGG - chr4_4:27490565-27490584 None:intergenic 20.0%
!! AACTGTTGATCATTATATTT+AGG - chr4_4:27490566-27490585 None:intergenic 20.0%
!!! TTTTCGATTTCAATTTTTGT+AGG - chr4_4:27491245-27491264 None:intergenic 20.0%
!! TTAAAATGGTTGTAATTACT+AGG + chr4_4:27491284-27491303 Msa0676570:intron 20.0%
!! AAATTAAAGGTAGATATTGT+AGG - chr4_4:27491371-27491390 None:intergenic 20.0%
!! GATTAGATTGAACATTAAAT+TGG + chr4_4:27491956-27491975 Msa0676570:intron 20.0%
!! ATTCCAATTAACAAGTTATT+GGG - chr4_4:27492103-27492122 None:intergenic 20.0%
!! TATTCCAATTAACAAGTTAT+TGG - chr4_4:27492104-27492123 None:intergenic 20.0%
!!! TAACTTGTTAATTGGAATAT+TGG + chr4_4:27492105-27492124 Msa0676570:intron 20.0%
!!! TAATTTATAGTTCATTTTGC+AGG + chr4_4:27492274-27492293 Msa0676570:intron 20.0%
!! TGAAACTAAATTTATCAACT+TGG - chr4_4:27492598-27492617 None:intergenic 20.0%
!! ATAATGATGACTATAATCAA+CGG - chr4_4:27492857-27492876 None:intergenic 20.0%
!! TTTAGCATTTATTATTTGGA+TGG + chr4_4:27493032-27493051 Msa0676570:intron 20.0%
!! TAAAAAGAATTATGCAATCA+TGG - chr4_4:27493294-27493313 None:intergenic 20.0%
!!! TGCAATTGATATGTTTTTTT+AGG + chr4_4:27493955-27493974 Msa0676570:three_prime_UTR 20.0%
!!! GCAATTGATATGTTTTTTTA+GGG + chr4_4:27493956-27493975 Msa0676570:three_prime_UTR 20.0%
!! ATTCATTTTCATATCACCAT+CGG + chr4_4:27487961-27487980 Msa0676570:five_prime_UTR 25.0%
!!! GATTTTTTTTTTTGGTCAAG+TGG + chr4_4:27488436-27488455 Msa0676570:intron 25.0%
! ATTAAGGGAATTAATTGTGT+TGG + chr4_4:27488533-27488552 Msa0676570:intron 25.0%
!!! CAATTTTTTGTTCGTAATTG+TGG - chr4_4:27488743-27488762 None:intergenic 25.0%
! TTCACAAAAGTAGAACAAAT+CGG - chr4_4:27488777-27488796 None:intergenic 25.0%
!!! TTTGTTCTACTTTTGTGAAT+TGG + chr4_4:27488778-27488797 Msa0676570:intron 25.0%
! TAGAACTGAGTTATCTTATA+TGG + chr4_4:27488836-27488855 Msa0676570:intron 25.0%
! TTATATGGTTTAATGAGATC+CGG + chr4_4:27488851-27488870 Msa0676570:intron 25.0%
!! TCTTTTGTCTTACTTTAAAC+TGG - chr4_4:27488973-27488992 None:intergenic 25.0%
!!! TTTTTAGAACCAGTGAATTT+AGG + chr4_4:27489080-27489099 Msa0676570:intron 25.0%
! CGTAAAATATTTACATCGAT+TGG - chr4_4:27489225-27489244 None:intergenic 25.0%
!! GTTTTCACACATATTATCTA+GGG + chr4_4:27489421-27489440 Msa0676570:intron 25.0%
!!! TATTAGTTGATGCTACATTT+TGG + chr4_4:27489583-27489602 Msa0676570:intron 25.0%
! AAGATATAGTGAGAAATTGT+TGG + chr4_4:27489732-27489751 Msa0676570:intron 25.0%
!!! TATTTCAGTTTTTCAACAGA+TGG - chr4_4:27489861-27489880 None:intergenic 25.0%
! ATGAAGGAAAAAAAATTCAC+TGG + chr4_4:27489952-27489971 Msa0676570:intron 25.0%
! AAATTTCAGAAGATATTGGA+AGG - chr4_4:27490125-27490144 None:intergenic 25.0%
! TGCTAAATTTCAGAAGATAT+TGG - chr4_4:27490129-27490148 None:intergenic 25.0%
! AGCGAAATTATTGCATATAA+TGG - chr4_4:27490205-27490224 None:intergenic 25.0%
! TTATATGCAATAATTTCGCT+TGG + chr4_4:27490205-27490224 Msa0676570:intron 25.0%
! TGATCTTAGAAAGAAACAAA+TGG - chr4_4:27490299-27490318 None:intergenic 25.0%
! TCTTGGAAATTCAAAAATTG+AGG + chr4_4:27490432-27490451 Msa0676570:CDS 25.0%
! CTTGGAAATTCAAAAATTGA+GGG + chr4_4:27490433-27490452 Msa0676570:CDS 25.0%
!!! AATTTTAAGTGACTAGTACT+CGG + chr4_4:27491000-27491019 Msa0676570:intron 25.0%
! AATAGTTAATACACAACCAT+AGG - chr4_4:27491138-27491157 None:intergenic 25.0%
! ATCATAACAAATCAAGAGTT+TGG - chr4_4:27491345-27491364 None:intergenic 25.0%
!! ACCTTTAATTTACTAGCTAA+CGG + chr4_4:27491380-27491399 Msa0676570:intron 25.0%
!!! CTAACTTTAGAATGTAATGT+GGG - chr4_4:27491415-27491434 None:intergenic 25.0%
! AAATATTAGTTAGAATGAGG+AGG + chr4_4:27491605-27491624 Msa0676570:intron 25.0%
!! ATGAAACATAGCATTTTCAA+TGG + chr4_4:27491714-27491733 Msa0676570:intron 25.0%
! GTTAAACAATATAAAGTGGA+CGG + chr4_4:27492027-27492046 Msa0676570:intron 25.0%
! TTAAACAATATAAAGTGGAC+GGG + chr4_4:27492028-27492047 Msa0676570:intron 25.0%
! TTAACTTATCTATGATGTCT+AGG - chr4_4:27492060-27492079 None:intergenic 25.0%
! AGACATCATAGATAAGTTAA+TGG + chr4_4:27492060-27492079 Msa0676570:intron 25.0%
! GACATCATAGATAAGTTAAT+GGG + chr4_4:27492061-27492080 Msa0676570:intron 25.0%
! TTCCAATTAACAAGTTATTG+GGG - chr4_4:27492102-27492121 None:intergenic 25.0%
!! GTTCTTAACAATTTTCTGAT+AGG + chr4_4:27492131-27492150 Msa0676570:intron 25.0%
! AATTAGAATAACCAAAGAGA+CGG - chr4_4:27492259-27492278 None:intergenic 25.0%
! AAGATTCAAAAGTTAGTAAC+TGG + chr4_4:27492521-27492540 Msa0676570:intron 25.0%
! AATGCTAAAAACAATGTGAT+GGG - chr4_4:27493021-27493040 None:intergenic 25.0%
! AAATGCTAAAAACAATGTGA+TGG - chr4_4:27493022-27493041 None:intergenic 25.0%
!! GATTGCATAATTCTTTTTAC+AGG + chr4_4:27493295-27493314 Msa0676570:intron 25.0%
! CAGATAGAAAATTCAATTTG+GGG - chr4_4:27493456-27493475 None:intergenic 25.0%
! GCAGATAGAAAATTCAATTT+GGG - chr4_4:27493457-27493476 None:intergenic 25.0%
! TGCAGATAGAAAATTCAATT+TGG - chr4_4:27493458-27493477 None:intergenic 25.0%
! TTTCTGCAAATTAGAACAAT+GGG - chr4_4:27493505-27493524 None:intergenic 25.0%
! ATTTCTGCAAATTAGAACAA+TGG - chr4_4:27493506-27493525 None:intergenic 25.0%
!!! TATTGATTTAGTCAGCTTTA+TGG + chr4_4:27493675-27493694 Msa0676570:three_prime_UTR 25.0%
!! ATTGATTTAGTCAGCTTTAT+GGG + chr4_4:27493676-27493695 Msa0676570:three_prime_UTR 25.0%
!! ACATCTTTTGACAAGATATT+TGG - chr4_4:27493712-27493731 None:intergenic 25.0%
TTACTACTAAGCCTAAGAAA+GGG + chr4_4:27488330-27488349 Msa0676570:CDS 30.0%
ATTACTTCTCAAGAGTGATA+GGG + chr4_4:27488361-27488380 Msa0676570:CDS 30.0%
!!! TGTTTTCTTGTTTTTCTGGA+TGG + chr4_4:27488404-27488423 Msa0676570:intron 30.0%
!!! GTTTTCTTGTTTTTCTGGAT+GGG + chr4_4:27488405-27488424 Msa0676570:intron 30.0%
AATAGATAAGTCACTGAATC+CGG - chr4_4:27488873-27488892 None:intergenic 30.0%
AGTGAATTTAGGAAGATGAA+GGG + chr4_4:27489091-27489110 Msa0676570:intron 30.0%
ACTTGGAAAAATTGTTCTGA+AGG + chr4_4:27489133-27489152 Msa0676570:intron 30.0%
! ACGTGATTTTCAATTCTCTT+CGG - chr4_4:27489394-27489413 None:intergenic 30.0%
! GGTTTTCACACATATTATCT+AGG + chr4_4:27489420-27489439 Msa0676570:intron 30.0%
ACCAGTAATAGAACAATTTG+TGG - chr4_4:27489478-27489497 None:intergenic 30.0%
AAATTGTTCTATTACTGGTG+TGG + chr4_4:27489479-27489498 Msa0676570:intron 30.0%
AATTGTTCTATTACTGGTGT+GGG + chr4_4:27489480-27489499 Msa0676570:intron 30.0%
TCTAAAAATACCGAATCAGT+TGG - chr4_4:27489508-27489527 None:intergenic 30.0%
!!! ACTGATTCGGTATTTTTAGA+TGG + chr4_4:27489508-27489527 Msa0676570:intron 30.0%
TAACGATTAACATCTCATGT+AGG + chr4_4:27489908-27489927 Msa0676570:intron 30.0%
AACGATTAACATCTCATGTA+GGG + chr4_4:27489909-27489928 Msa0676570:intron 30.0%
!! TTTCCTTCATCACACTTTTT+AGG - chr4_4:27489942-27489961 None:intergenic 30.0%
GGTTCACGTATTTATGTTAT+AGG + chr4_4:27489973-27489992 Msa0676570:intron 30.0%
!! CTAAGATCAAGTTGATTGTT+TGG + chr4_4:27490310-27490329 Msa0676570:intron 30.0%
!! TTCTACTGTTTCTACAAACT+TGG - chr4_4:27490519-27490538 None:intergenic 30.0%
! TATATTTAGGGTCAATGTTG+AGG - chr4_4:27490553-27490572 None:intergenic 30.0%
TTCATCCATCTTCTCTTAAT+AGG + chr4_4:27490677-27490696 Msa0676570:intron 30.0%
ACTTACCTATTAAGAGAAGA+TGG - chr4_4:27490685-27490704 None:intergenic 30.0%
!!! GTAAGAACGGCTATTTTTAT+GGG - chr4_4:27490729-27490748 None:intergenic 30.0%
!!! AGTAAGAACGGCTATTTTTA+TGG - chr4_4:27490730-27490749 None:intergenic 30.0%
ATAATCACCTTGAGTAAGAA+CGG - chr4_4:27490742-27490761 None:intergenic 30.0%
CAATTATGTAAACTGCCTTA+TGG + chr4_4:27490861-27490880 Msa0676570:intron 30.0%
ACGATTATATATGTATGCAG+TGG - chr4_4:27490975-27490994 None:intergenic 30.0%
AAGTAGATGTACTTGATTCA+TGG - chr4_4:27491048-27491067 None:intergenic 30.0%
! GAATCAAGTACATCTACTTT+TGG + chr4_4:27491049-27491068 Msa0676570:intron 30.0%
AACGCAAATATCAAGAAACT+CGG - chr4_4:27491192-27491211 None:intergenic 30.0%
ATAACAAATCAAGAGTTTGG+AGG - chr4_4:27491342-27491361 None:intergenic 30.0%
ACCGTTAGCTAGTAAATTAA+AGG - chr4_4:27491384-27491403 None:intergenic 30.0%
!! GCTAACTTTAGAATGTAATG+TGG - chr4_4:27491416-27491435 None:intergenic 30.0%
! TTTTATCCCTAAGTCTATTG+TGG + chr4_4:27491664-27491683 Msa0676570:intron 30.0%
! TGGAATTGGCATGTTATTTA+TGG + chr4_4:27491684-27491703 Msa0676570:intron 30.0%
TGATATTCCTCATCAAAACA+TGG + chr4_4:27491983-27492002 Msa0676570:intron 30.0%
ATCATAGATAAGTTAATGGG+TGG + chr4_4:27492064-27492083 Msa0676570:intron 30.0%
TTGTTAATTGGAATATTGGC+TGG + chr4_4:27492109-27492128 Msa0676570:intron 30.0%
TTATTAAGCAGCGATTCAAT+TGG - chr4_4:27492217-27492236 None:intergenic 30.0%
GATCTGATAGAAGAGATAAA+AGG + chr4_4:27492349-27492368 Msa0676570:CDS 30.0%
ATTTATCCTCAACACACATT+AGG - chr4_4:27492572-27492591 None:intergenic 30.0%
GTTCTATGTTCATTCAAATC+AGG + chr4_4:27492629-27492648 Msa0676570:intron 30.0%
TTCATTCAAATCAGGTTCTT+TGG + chr4_4:27492637-27492656 Msa0676570:intron 30.0%
TGTAACAGCTAATATTACTC+AGG + chr4_4:27493151-27493170 Msa0676570:CDS 30.0%
! AAGATCCTCTTCTGAAAAAT+CGG - chr4_4:27493399-27493418 None:intergenic 30.0%
! TAATTTGCAGAAATCAGTAG+AGG + chr4_4:27493512-27493531 Msa0676570:intron 30.0%
TTGATATTTAACCTGACTGA+AGG - chr4_4:27493603-27493622 None:intergenic 30.0%
TTCAGTCAGGTTAAATATCA+AGG + chr4_4:27493602-27493621 Msa0676570:CDS 30.0%
CAGAATAGATCACTTGAATA+TGG + chr4_4:27493649-27493668 Msa0676570:exon 30.0%
TTACCAAGGTTACATATACA+GGG + chr4_4:27493731-27493750 Msa0676570:three_prime_UTR 30.0%
!! TTTTTAGGGAAACTAGTATG+TGG + chr4_4:27493970-27493989 Msa0676570:three_prime_UTR 30.0%
TTGTACATGAAGCCATGTTT+GGG - chr4_4:27488040-27488059 None:intergenic 35.0%
! GTTAGATTAACCGACTTAGT+AGG - chr4_4:27488191-27488210 None:intergenic 35.0%
TTAATCTAACCTACCAGTCT+AGG + chr4_4:27488201-27488220 Msa0676570:CDS 35.0%
! AACTGTTGATGAAGATGAGA+AGG + chr4_4:27488268-27488287 Msa0676570:CDS 35.0%
GTTACTACTAAGCCTAAGAA+AGG + chr4_4:27488329-27488348 Msa0676570:CDS 35.0%
CATTACTTCTCAAGAGTGAT+AGG + chr4_4:27488360-27488379 Msa0676570:CDS 35.0%
AATAACTACAGTTGTGGTTC+TGG + chr4_4:27488475-27488494 Msa0676570:intron 35.0%
AAGGGAATTAATTGTGTTGG+TGG + chr4_4:27488536-27488555 Msa0676570:intron 35.0%
! AGGGAATTAATTGTGTTGGT+GGG + chr4_4:27488537-27488556 Msa0676570:intron 35.0%
ATCCGAATTCAGTGACTTTA+AGG - chr4_4:27488950-27488969 None:intergenic 35.0%
TATGACAGTAGAAGAGTCAA+AGG + chr4_4:27489002-27489021 Msa0676570:intron 35.0%
! ATCTCTTTTCTCATTGCGAT+CGG + chr4_4:27489037-27489056 Msa0676570:intron 35.0%
CTTCATCTTCCTAAATTCAC+TGG - chr4_4:27489092-27489111 None:intergenic 35.0%
CAGTGAATTTAGGAAGATGA+AGG + chr4_4:27489090-27489109 Msa0676570:intron 35.0%
GTGAATTTAGGAAGATGAAG+GGG + chr4_4:27489092-27489111 Msa0676570:intron 35.0%
! CGATGTAAATATTTTACGGC+AGG + chr4_4:27489227-27489246 Msa0676570:intron 35.0%
!! TACCAAGGATTGGTTACATT+GGG - chr4_4:27489343-27489362 None:intergenic 35.0%
AATTGAAAATCACGTGACTG+TGG + chr4_4:27489399-27489418 Msa0676570:intron 35.0%
GTAATAGAACAATTTGTGGC+CGG - chr4_4:27489474-27489493 None:intergenic 35.0%
GCCACAAATTGTTCTATTAC+TGG + chr4_4:27489474-27489493 Msa0676570:intron 35.0%
!!! GATTCGGTATTTTTAGATGG+AGG + chr4_4:27489511-27489530 Msa0676570:intron 35.0%
CAGTAGCTAATGACTACAAA+TGG + chr4_4:27489765-27489784 Msa0676570:intron 35.0%
ACGATTAACATCTCATGTAG+GGG + chr4_4:27489910-27489929 Msa0676570:intron 35.0%
! ACTCCTAAAAAGTGTGATGA+AGG + chr4_4:27489936-27489955 Msa0676570:intron 35.0%
TTATGTTATAGGAGCTTCAG+AGG + chr4_4:27489984-27490003 Msa0676570:intron 35.0%
TTATAGCCAGACTTTCTCTT+TGG + chr4_4:27490067-27490086 Msa0676570:intron 35.0%
! TCTGAAATTTAGCATGAGTG+AGG + chr4_4:27490135-27490154 Msa0676570:intron 35.0%
CTGAAATTTAGCATGAGTGA+GGG + chr4_4:27490136-27490155 Msa0676570:intron 35.0%
ATGCAATAATTTCGCTTGGT+TGG + chr4_4:27490209-27490228 Msa0676570:intron 35.0%
AAGTAGGCAATCAAATATGC+TGG - chr4_4:27490245-27490264 None:intergenic 35.0%
AGCATATTTGATTGCCTACT+TGG + chr4_4:27490244-27490263 Msa0676570:intron 35.0%
TACACAATCACTATCCAAGT+AGG - chr4_4:27490261-27490280 None:intergenic 35.0%
CTTGAAGACAGCAATTTCTT+TGG + chr4_4:27490475-27490494 Msa0676570:CDS 35.0%
AAAATAGCCGTTCTTACTCA+AGG + chr4_4:27490732-27490751 Msa0676570:CDS 35.0%
TGTAAAGGGATGTGTATGAA+AGG + chr4_4:27490830-27490849 Msa0676570:intron 35.0%
TATGTAAACTGCCTTATGGA+TGG + chr4_4:27490865-27490884 Msa0676570:intron 35.0%
!! ATCTACTTTTGGTAGAGTGA+TGG + chr4_4:27491060-27491079 Msa0676570:intron 35.0%
!! TCTACTTTTGGTAGAGTGAT+GGG + chr4_4:27491061-27491080 Msa0676570:intron 35.0%
AATGGTTGTAATTACTAGGC+TGG + chr4_4:27491288-27491307 Msa0676570:intron 35.0%
CAGAACCTACTCAAAATTCA+AGG - chr4_4:27491570-27491589 None:intergenic 35.0%
AATGAGGAGGCAAACTATTA+TGG + chr4_4:27491618-27491637 Msa0676570:intron 35.0%
CCAATTCCACAATAGACTTA+GGG - chr4_4:27491673-27491692 None:intergenic 35.0%
AAAATTATCCGCCAAAGAGA+AGG - chr4_4:27491820-27491839 None:intergenic 35.0%
! TTGAAAGTCTAGTTTGAGCT+TGG + chr4_4:27491896-27491915 Msa0676570:intron 35.0%
! TGAAAGTCTAGTTTGAGCTT+GGG + chr4_4:27491897-27491916 Msa0676570:intron 35.0%
!! CACCCCAATAACTTGTTAAT+TGG + chr4_4:27492097-27492116 Msa0676570:intron 35.0%
GTTGTGCAAAGTAAAATGGT+AGG - chr4_4:27492186-27492205 None:intergenic 35.0%
! ACCATTTTACTTTGCACAAC+TGG + chr4_4:27492186-27492205 Msa0676570:intron 35.0%
! CCATTTTACTTTGCACAACT+GGG + chr4_4:27492187-27492206 Msa0676570:intron 35.0%
CTATTTATTGTCCGTCTCTT+TGG + chr4_4:27492245-27492264 Msa0676570:intron 35.0%
CTGATAGAAGAGATAAAAGG+AGG + chr4_4:27492352-27492371 Msa0676570:CDS 35.0%
AGAGATAAAAGGAGGATACA+TGG + chr4_4:27492360-27492379 Msa0676570:CDS 35.0%
AAGATATTGAGCAACACCTT+AGG - chr4_4:27492421-27492440 None:intergenic 35.0%
! AGGAGAACATGATTTGCAAA+TGG - chr4_4:27492552-27492571 None:intergenic 35.0%
! TTGCCATTGTTGATTGTTTC+AGG + chr4_4:27493067-27493086 Msa0676570:intron 35.0%
CAACCTGAAACAATCAACAA+TGG - chr4_4:27493073-27493092 None:intergenic 35.0%
GCTATAGCAGAATTCAAACA+GGG + chr4_4:27493317-27493336 Msa0676570:CDS 35.0%
AACAGGGAAAAGTTGAATAC+AGG + chr4_4:27493333-27493352 Msa0676570:CDS 35.0%
ACAGGGAAAAGTTGAATACA+GGG + chr4_4:27493334-27493353 Msa0676570:CDS 35.0%
!! GAAAAATCGGCTTTTCCAAA+AGG - chr4_4:27493386-27493405 None:intergenic 35.0%
!! AAAAGCCGATTTTTCAGAAG+AGG + chr4_4:27493391-27493410 Msa0676570:CDS 35.0%
CTTGTCAAAAGATGTTACCA+AGG + chr4_4:27493717-27493736 Msa0676570:three_prime_UTR 35.0%
GTTACCAAGGTTACATATAC+AGG + chr4_4:27493730-27493749 Msa0676570:three_prime_UTR 35.0%
TACATATACAGGGATGAGTT+TGG + chr4_4:27493741-27493760 Msa0676570:three_prime_UTR 35.0%
ACAAGGAAAATCCTCATCTT+GGG - chr4_4:27493826-27493845 None:intergenic 35.0%
TACAAGGAAAATCCTCATCT+TGG - chr4_4:27493827-27493846 None:intergenic 35.0%
CTCACTGCTAATAGCAAAAA+TGG - chr4_4:27493914-27493933 None:intergenic 35.0%
!!! CATTTTTGCTATTAGCAGTG+AGG + chr4_4:27493912-27493931 Msa0676570:three_prime_UTR 35.0%
GTTATCTATTCGTTTGCCGA+TGG - chr4_4:27487980-27487999 None:intergenic 40.0%
GTTGTACATGAAGCCATGTT+TGG - chr4_4:27488041-27488060 None:intergenic 40.0%
AGAAGAAGGAGAAAGGTCTT+GGG - chr4_4:27488120-27488139 None:intergenic 40.0%
!! AGAAGGTTCTGGGAAAAGAA+CGG - chr4_4:27488145-27488164 None:intergenic 40.0%
TTAGTAGGCTTCAAAACGAG+GGG - chr4_4:27488176-27488195 None:intergenic 40.0%
CTTAGTAGGCTTCAAAACGA+GGG - chr4_4:27488177-27488196 None:intergenic 40.0%
ACTTAGTAGGCTTCAAAACG+AGG - chr4_4:27488178-27488197 None:intergenic 40.0%
!!! CGTTTTGAAGCCTACTAAGT+CGG + chr4_4:27488178-27488197 Msa0676570:CDS 40.0%
GTAAAATCGAAGACCTAGAC+TGG - chr4_4:27488217-27488236 None:intergenic 40.0%
! GTTGATGAAGATGAGAAGGA+TGG + chr4_4:27488272-27488291 Msa0676570:CDS 40.0%
AATGCAGCTTTCCCTTTCTT+AGG - chr4_4:27488344-27488363 None:intergenic 40.0%
! ACGTCGTCAATCAAAAGTGT+GGG + chr4_4:27488701-27488720 Msa0676570:intron 40.0%
CTGAAGTCACCTTGAATTAC+CGG + chr4_4:27488924-27488943 Msa0676570:intron 40.0%
!! ACTTTAAGGCCGGTAATTCA+AGG - chr4_4:27488936-27488955 None:intergenic 40.0%
!! GAATTCAGTGACTTTAAGGC+CGG - chr4_4:27488946-27488965 None:intergenic 40.0%
GGCCTTAAAGTCACTGAATT+CGG + chr4_4:27488945-27488964 Msa0676570:intron 40.0%
! GGGGGTATAATCCGTAATTT+GGG - chr4_4:27489323-27489342 None:intergenic 40.0%
! TGGGGGTATAATCCGTAATT+TGG - chr4_4:27489324-27489343 None:intergenic 40.0%
!! ACCAAGGATTGGTTACATTG+GGG - chr4_4:27489342-27489361 None:intergenic 40.0%
!! CTACCAAGGATTGGTTACAT+TGG - chr4_4:27489344-27489363 None:intergenic 40.0%
CAATGTAACCAATCCTTGGT+AGG + chr4_4:27489342-27489361 Msa0676570:intron 40.0%
CGGTATGTGTTACGTGTATA+CGG - chr4_4:27489374-27489393 None:intergenic 40.0%
GCTACAAGGTTAGGTATAAG+TGG - chr4_4:27489544-27489563 None:intergenic 40.0%
TGCTGTACGTGAAAATTCTC+AGG - chr4_4:27489658-27489677 None:intergenic 40.0%
GTAGTCATTAGCTACTGAAG+AGG - chr4_4:27489762-27489781 None:intergenic 40.0%
! TTTTGTGCTCACTGCTCATT+TGG + chr4_4:27489820-27489839 Msa0676570:intron 40.0%
TTTCCACCAAAGAGAAAGTC+TGG - chr4_4:27490076-27490095 None:intergenic 40.0%
TTCACTTTCCATGTTTCACC+AGG + chr4_4:27490394-27490413 Msa0676570:intron 40.0%
AGAATCTCTTAGATCTCACC+TGG - chr4_4:27490415-27490434 None:intergenic 40.0%
GGTGAGATCTAAGAGATTCT+TGG + chr4_4:27490415-27490434 Msa0676570:intron 40.0%
! ATTTAGGGTCAATGTTGAGG+CGG - chr4_4:27490550-27490569 None:intergenic 40.0%
TTAATAGGTAAGTCTGCCGA+AGG + chr4_4:27490692-27490711 Msa0676570:intron 40.0%
TAATAGGTAAGTCTGCCGAA+GGG + chr4_4:27490693-27490712 Msa0676570:intron 40.0%
TATGTCCATGTCCATCCATA+AGG - chr4_4:27490879-27490898 None:intergenic 40.0%
GGACATGGACATAAGATGAT+AGG + chr4_4:27490886-27490905 Msa0676570:intron 40.0%
! ATAGGTCTTTTCTCTCGAAG+TGG + chr4_4:27490904-27490923 Msa0676570:intron 40.0%
CTTCGTGTGTGGATAACTAT+GGG + chr4_4:27491100-27491119 Msa0676570:intron 40.0%
ACTCGGTTGTTATGCACAAA+TGG - chr4_4:27491175-27491194 None:intergenic 40.0%
!! AAGTTAGCTGCTCACTTTTG+AGG + chr4_4:27491428-27491447 Msa0676570:intron 40.0%
!! ACGCACCTTGAATTTTGAGT+AGG + chr4_4:27491562-27491581 Msa0676570:intron 40.0%
AGGAGGCAAACTATTATGGA+GGG + chr4_4:27491622-27491641 Msa0676570:intron 40.0%
CCCTAAGTCTATTGTGGAAT+TGG + chr4_4:27491670-27491689 Msa0676570:intron 40.0%
GCCAATTCCACAATAGACTT+AGG - chr4_4:27491674-27491693 None:intergenic 40.0%
GTCCTTAAATGCCAAGTAAC+TGG + chr4_4:27491745-27491764 Msa0676570:intron 40.0%
GTCCAGTTACTTGGCATTTA+AGG - chr4_4:27491750-27491769 None:intergenic 40.0%
AGAGAAGGATCAAAGGAACA+GGG - chr4_4:27491805-27491824 None:intergenic 40.0%
AAGAGAAGGATCAAAGGAAC+AGG - chr4_4:27491806-27491825 None:intergenic 40.0%
GTTCCTTTGATCCTTCTCTT+TGG + chr4_4:27491806-27491825 Msa0676570:intron 40.0%
AAAACATGGACGATGGTTGA+TGG + chr4_4:27491997-27492016 Msa0676570:intron 40.0%
CCCAGTTGTGCAAAGTAAAA+TGG - chr4_4:27492190-27492209 None:intergenic 40.0%
TTCGATGAAGCAAAACTTGC+AGG + chr4_4:27492304-27492323 Msa0676570:CDS 40.0%
AAAACTTGCAGGAGCAGATT+TGG + chr4_4:27492315-27492334 Msa0676570:CDS 40.0%
TTCTCCAGATATGATGCCTA+AGG + chr4_4:27492402-27492421 Msa0676570:CDS 40.0%
AACACCTTAGGCATCATATC+TGG - chr4_4:27492409-27492428 None:intergenic 40.0%
TGTTCTCCTAATGTGTGTTG+AGG + chr4_4:27492563-27492582 Msa0676570:intron 40.0%
TCTGAGCATAGCATCAAGTA+TGG - chr4_4:27492734-27492753 None:intergenic 40.0%
TGATGCTATGCTCAGATTCA+TGG + chr4_4:27492738-27492757 Msa0676570:intron 40.0%
GGCTATAGCAGAATTCAAAC+AGG + chr4_4:27493316-27493335 Msa0676570:intron 40.0%
GAATACAGGGCAGATAAAAC+AGG + chr4_4:27493347-27493366 Msa0676570:CDS 40.0%
AGTAGAGGCAAACAAACCAT+CGG + chr4_4:27493527-27493546 Msa0676570:CDS 40.0%
CATCCCTGTATATGTAACCT+TGG - chr4_4:27493737-27493756 None:intergenic 40.0%
TATACAGGGATGAGTTTGGT+TGG + chr4_4:27493745-27493764 Msa0676570:three_prime_UTR 40.0%
! CTATGTTGTGTGCACACTTT+TGG - chr4_4:27493795-27493814 None:intergenic 40.0%
TGAAAGCAGGACATTAGAGG+TGG - chr4_4:27488002-27488021 None:intergenic 45.0%
TGGTGAAAGCAGGACATTAG+AGG - chr4_4:27488005-27488024 None:intergenic 45.0%
GGGTGAGAATAGAAGAAGAG+GGG - chr4_4:27488097-27488116 None:intergenic 45.0%
GGGGTGAGAATAGAAGAAGA+GGG - chr4_4:27488098-27488117 None:intergenic 45.0%
AAGAAGGAGAAAGGTCTTGG+GGG - chr4_4:27488118-27488137 None:intergenic 45.0%
GAAGAAGGAGAAAGGTCTTG+GGG - chr4_4:27488119-27488138 None:intergenic 45.0%
GAGAAGAAGGAGAAAGGTCT+TGG - chr4_4:27488121-27488140 None:intergenic 45.0%
AACGGAGAGAAGAAGGAGAA+AGG - chr4_4:27488127-27488146 None:intergenic 45.0%
GGAAAAGAACGGAGAGAAGA+AGG - chr4_4:27488134-27488153 None:intergenic 45.0%
AATCGAAGACCTAGACTGGT+AGG - chr4_4:27488213-27488232 None:intergenic 45.0%
!! GAGAAGGATGGTGTTGATGA+TGG + chr4_4:27488284-27488303 Msa0676570:CDS 45.0%
!! CAGTTGTGGTTCTGGTTTCA+TGG + chr4_4:27488483-27488502 Msa0676570:intron 45.0%
GTTCGCGACTATGCTTCATA+TGG - chr4_4:27488568-27488587 None:intergenic 45.0%
GTAAGTACACTGTCAGACAG+TGG + chr4_4:27488659-27488678 Msa0676570:intron 45.0%
CACGTCGTCAATCAAAAGTG+TGG + chr4_4:27488700-27488719 Msa0676570:intron 45.0%
TTTCTCATTGCGATCGGAAG+TGG + chr4_4:27489043-27489062 Msa0676570:intron 45.0%
!! CCAAGGATTGGTTACATTGG+GGG - chr4_4:27489341-27489360 None:intergenic 45.0%
TAACCTTGTAGCTGTGTCGT+GGG + chr4_4:27489552-27489571 Msa0676570:intron 45.0%
TAGCCAGACTTTCTCTTTGG+TGG + chr4_4:27490070-27490089 Msa0676570:intron 45.0%
AGATCTCACCTGGTGAAACA+TGG - chr4_4:27490405-27490424 None:intergenic 45.0%
GTCAATGTTGAGGCGGAAAT+GGG - chr4_4:27490543-27490562 None:intergenic 45.0%
ACTAGAATCAAGCGAAGAGC+AGG - chr4_4:27490607-27490626 None:intergenic 45.0%
! ATGGGTTTTCCAGTTCCCTT+CGG - chr4_4:27490711-27490730 None:intergenic 45.0%
AACTGCCTTATGGATGGACA+TGG + chr4_4:27490871-27490890 Msa0676570:intron 45.0%
!! TTGTCCTGGCATTGACATAG+AGG + chr4_4:27490938-27490957 Msa0676570:intron 45.0%
!! TTTGGTAGAGTGATGGGTCA+CGG + chr4_4:27491067-27491086 Msa0676570:intron 45.0%
GAATTGAACTGCTTCGTGTG+TGG + chr4_4:27491089-27491108 Msa0676570:intron 45.0%
GCTTCGTGTGTGGATAACTA+TGG + chr4_4:27491099-27491118 Msa0676570:intron 45.0%
! TGGGTTCATTGAGTTGCCTA+TGG + chr4_4:27491119-27491138 Msa0676570:intron 45.0%
TGGTTCCAAACCCTCTTTGA+AGG + chr4_4:27491308-27491327 Msa0676570:intron 45.0%
GGTTCCAAACCCTCTTTGAA+GGG + chr4_4:27491309-27491328 Msa0676570:intron 45.0%
GAGGAGGCAAACTATTATGG+AGG + chr4_4:27491621-27491640 Msa0676570:intron 45.0%
GCAAACTATTATGGAGGGTG+AGG + chr4_4:27491627-27491646 Msa0676570:intron 45.0%
CCTTTGATCCTTCTCTTTGG+CGG + chr4_4:27491809-27491828 Msa0676570:intron 45.0%
!!! CCATCGTCCATGTTTTGATG+AGG - chr4_4:27491993-27492012 None:intergenic 45.0%
CCTCATCAAAACATGGACGA+TGG + chr4_4:27491990-27492009 Msa0676570:intron 45.0%
TAAGCAGCGATTCAATTGGC+TGG - chr4_4:27492213-27492232 None:intergenic 45.0%
CTTCGCTTGCATATCCTTCA+TGG + chr4_4:27492684-27492703 Msa0676570:intron 45.0%
GTTGCAGATTTCAGCCATGA+AGG - chr4_4:27492701-27492720 None:intergenic 45.0%
GAGCATAGCATCAAGTATGG+TGG - chr4_4:27492731-27492750 None:intergenic 45.0%
ACACAGAATCCCCCAAAAGA+AGG - chr4_4:27492934-27492953 None:intergenic 45.0%
CATCAGAGCGTGACAATACA+GGG + chr4_4:27492986-27493005 Msa0676570:intron 45.0%
GTGACAATACAGGGACCAAT+GGG + chr4_4:27492995-27493014 Msa0676570:intron 45.0%
!! AAACAATGTGATGGGCCCAT+TGG - chr4_4:27493013-27493032 None:intergenic 45.0%
TCAACAATGGCAACTGACTG+AGG - chr4_4:27493060-27493079 None:intergenic 45.0%
!! TTGTTTCAGGTTGCTAGCCT+AGG + chr4_4:27493080-27493099 Msa0676570:intron 45.0%
!! TGTTTCAGGTTGCTAGCCTA+GGG + chr4_4:27493081-27493100 Msa0676570:intron 45.0%
CTCATGCCAAATCCAAAAGC+TGG + chr4_4:27493125-27493144 Msa0676570:CDS 45.0%
! ACAGTGCCAGCTTTTGGATT+TGG - chr4_4:27493134-27493153 None:intergenic 45.0%
! GGAATCGTTCACTTGCCTTT+TGG + chr4_4:27493368-27493387 Msa0676570:CDS 45.0%
GTAGAGGCAAACAAACCATC+GGG + chr4_4:27493528-27493547 Msa0676570:CDS 45.0%
GTGCACACAACATAGTCCTT+TGG + chr4_4:27493800-27493819 Msa0676570:three_prime_UTR 45.0%
AAATCCTCATCTTGGGCCAA+AGG - chr4_4:27493819-27493838 None:intergenic 45.0%
ATTATAGCCCGTTCTTGGCA+CGG - chr4_4:27493997-27494016 None:intergenic 45.0%
!! ATTATTAGTATTTATTATTA+AGG + chr4_4:27488517-27488536 Msa0676570:intron 5.0%
!! TTATTAGTATTTATTATTAA+GGG + chr4_4:27488518-27488537 Msa0676570:intron 5.0%
!! AATACATATAATTAAAAAAA+GGG - chr4_4:27491462-27491481 None:intergenic 5.0%
! TGTTTGGGAAGAGAGTGTGG+TGG - chr4_4:27488025-27488044 None:intergenic 50.0%
CCATGTTTGGGAAGAGAGTG+TGG - chr4_4:27488028-27488047 None:intergenic 50.0%
CCACACTCTCTTCCCAAACA+TGG + chr4_4:27488025-27488044 Msa0676570:CDS 50.0%
GGGGGTGAGAATAGAAGAAG+AGG - chr4_4:27488099-27488118 None:intergenic 50.0%
AGAAGGAGAAAGGTCTTGGG+GGG - chr4_4:27488117-27488136 None:intergenic 50.0%
GGAGAGAGGAAGAAGGTTCT+GGG - chr4_4:27488155-27488174 None:intergenic 50.0%
AGCAACATCAGCAGTGACAG+CGG - chr4_4:27488246-27488265 None:intergenic 50.0%
TGTCAGACAGTGGCATGTGT+CGG + chr4_4:27488669-27488688 Msa0676570:intron 50.0%
CCCCCAATGTAACCAATCCT+TGG + chr4_4:27489338-27489357 Msa0676570:intron 50.0%
TGTGTTCAGCCAAGAGGTGA+GGG + chr4_4:27489444-27489463 Msa0676570:intron 50.0%
GGTGTGGGTACCAACTGATT+CGG + chr4_4:27489495-27489514 Msa0676570:intron 50.0%
CACGACACAGCTACAAGGTT+AGG - chr4_4:27489553-27489572 None:intergenic 50.0%
CTAACCTTGTAGCTGTGTCG+TGG + chr4_4:27489551-27489570 Msa0676570:intron 50.0%
ATACCCACGACACAGCTACA+AGG - chr4_4:27489558-27489577 None:intergenic 50.0%
GGTCAATGTTGAGGCGGAAA+TGG - chr4_4:27490544-27490563 None:intergenic 50.0%
TGGTAGACATTGCGTTGTCC+TGG + chr4_4:27490924-27490943 Msa0676570:intron 50.0%
ACGTCCTCTATGTCAATGCC+AGG - chr4_4:27490945-27490964 None:intergenic 50.0%
CTTGCCCTTCAAAGAGGGTT+TGG - chr4_4:27491316-27491335 None:intergenic 50.0%
! CAAACCCTCTTTGAAGGGCA+AGG + chr4_4:27491314-27491333 Msa0676570:intron 50.0%
GGATCCTTGCCCTTCAAAGA+GGG - chr4_4:27491321-27491340 None:intergenic 50.0%
AGGATCCTTGCCCTTCAAAG+AGG - chr4_4:27491322-27491341 None:intergenic 50.0%
AGCAAGGCTGTCCAGTTACT+TGG - chr4_4:27491759-27491778 None:intergenic 50.0%
CCGCCAAAGAGAAGGATCAA+AGG - chr4_4:27491812-27491831 None:intergenic 50.0%
! CTTGCAGGAGCAGATTTGGT+AGG + chr4_4:27492319-27492338 Msa0676570:CDS 50.0%
! AGCAGATTTGGTAGGTGGAG+AGG + chr4_4:27492327-27492346 Msa0676570:CDS 50.0%
GCATCAGAGCGTGACAATAC+AGG + chr4_4:27492985-27493004 Msa0676570:intron 50.0%
CGTGACAATACAGGGACCAA+TGG + chr4_4:27492994-27493013 Msa0676570:intron 50.0%
! TGCTAGCCTAGGGAAGATTC+TGG + chr4_4:27493091-27493110 Msa0676570:CDS 50.0%
! GCTAGCCTAGGGAAGATTCT+GGG + chr4_4:27493092-27493111 Msa0676570:CDS 50.0%
CTAGCCTAGGGAAGATTCTG+GGG + chr4_4:27493093-27493112 Msa0676570:CDS 50.0%
GGATTTGGCATGAGTCCTCT+TGG - chr4_4:27493119-27493138 None:intergenic 50.0%
! GCTGTTACAGTGCCAGCTTT+TGG - chr4_4:27493140-27493159 None:intergenic 50.0%
AACAAACCATCGGGTGCGAA+AGG + chr4_4:27493537-27493556 Msa0676570:CDS 50.0%
TGCGCACATATGCTCAGCAA+TGG + chr4_4:27493575-27493594 Msa0676570:CDS 50.0%
GCGCACATATGCTCAGCAAT+GGG + chr4_4:27493576-27493595 Msa0676570:CDS 50.0%
CGCACATATGCTCAGCAATG+GGG + chr4_4:27493577-27493596 Msa0676570:CDS 50.0%
TAGTCCTTTGGCCCAAGATG+AGG + chr4_4:27493812-27493831 Msa0676570:three_prime_UTR 50.0%
TATGTGGACCGTGCCAAGAA+CGG + chr4_4:27493986-27494005 Msa0676570:three_prime_UTR 50.0%
! GAGAGTGTGGTGGTGAAAGC+AGG - chr4_4:27488015-27488034 None:intergenic 55.0%
GGGAGAGAGGAAGAAGGTTC+TGG - chr4_4:27488156-27488175 None:intergenic 55.0%
AACGAGGGGAGAGAGGAAGA+AGG - chr4_4:27488162-27488181 None:intergenic 55.0%
GCTTCAAAACGAGGGGAGAG+AGG - chr4_4:27488169-27488188 None:intergenic 55.0%
GAAGGGGTTCATCGTTCACG+CGG + chr4_4:27489108-27489127 Msa0676570:intron 55.0%
TCATCGTTCACGCGGAGACT+TGG + chr4_4:27489116-27489135 Msa0676570:intron 55.0%
TATACGGCTGCTGCCTACCA+AGG - chr4_4:27489358-27489377 None:intergenic 55.0%
CTAGGGTGTGTTCAGCCAAG+AGG + chr4_4:27489438-27489457 Msa0676570:intron 55.0%
GTGTGTTCAGCCAAGAGGTG+AGG + chr4_4:27489443-27489462 Msa0676570:intron 55.0%
GTAAGTCTGCCGAAGGGAAC+TGG + chr4_4:27490699-27490718 Msa0676570:CDS 55.0%
! GCAGGAGCAGATTTGGTAGG+TGG + chr4_4:27492322-27492341 Msa0676570:CDS 55.0%
TTGGCCCCAGAATCTTCCCT+AGG - chr4_4:27493100-27493119 None:intergenic 55.0%
TACACACCTTTCGCACCCGA+TGG - chr4_4:27493546-27493565 None:intergenic 55.0%
ATGTGGACCGTGCCAAGAAC+GGG + chr4_4:27493987-27494006 Msa0676570:three_prime_UTR 55.0%
GGCTGCTGCCTACCAAGGAT+TGG - chr4_4:27489353-27489372 None:intergenic 60.0%
GCCAAGAGGTGAGGGAACTC+CGG + chr4_4:27489452-27489471 Msa0676570:intron 60.0%
!! GGGAAGATTCTGGGGCCAAG+AGG + chr4_4:27493101-27493120 Msa0676570:CDS 60.0%
! CGGGTGCGAAAGGTGTGTAC+TGG + chr4_4:27493547-27493566 Msa0676570:CDS 60.0%
CAGCAATGGGGCCTTCAGTC+AGG + chr4_4:27493589-27493608 Msa0676570:CDS 60.0%
GCCGGAGTTCCCTCACCTCT+TGG - chr4_4:27489456-27489475 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 27487927 27494020 27487927 ID=Msa0676570;Name=Msa0676570
chr4_4 mRNA 27487927 27494020 27487927 ID=Msa0676570-mRNA-1;Parent=Msa0676570;Name=Msa0676570-mRNA-1;_AED=0.07;_eAED=0.07;_QI=81|1|1|1|1|1|7|364|360
chr4_4 exon 27487927 27488382 27487927 ID=Msa0676570-mRNA-1:exon:7258;Parent=Msa0676570-mRNA-1
chr4_4 exon 27490416 27490595 27490416 ID=Msa0676570-mRNA-1:exon:7259;Parent=Msa0676570-mRNA-1
chr4_4 exon 27490699 27490753 27490699 ID=Msa0676570-mRNA-1:exon:7260;Parent=Msa0676570-mRNA-1
chr4_4 exon 27492296 27492423 27492296 ID=Msa0676570-mRNA-1:exon:7261;Parent=Msa0676570-mRNA-1
chr4_4 exon 27493089 27493172 27493089 ID=Msa0676570-mRNA-1:exon:7262;Parent=Msa0676570-mRNA-1
chr4_4 exon 27493317 27493442 27493317 ID=Msa0676570-mRNA-1:exon:7263;Parent=Msa0676570-mRNA-1
chr4_4 exon 27493522 27494020 27493522 ID=Msa0676570-mRNA-1:exon:7264;Parent=Msa0676570-mRNA-1
chr4_4 five_prime_UTR 27487927 27488007 27487927 ID=Msa0676570-mRNA-1:five_prime_utr;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27488008 27488382 27488008 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27490416 27490595 27490416 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27490699 27490753 27490699 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27492296 27492423 27492296 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27493089 27493172 27493089 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27493317 27493442 27493317 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 CDS 27493522 27493656 27493522 ID=Msa0676570-mRNA-1:cds;Parent=Msa0676570-mRNA-1
chr4_4 three_prime_UTR 27493657 27494020 27493657 ID=Msa0676570-mRNA-1:three_prime_utr;Parent=Msa0676570-mRNA-1
Gene Sequence

>Msa0676570

ATGTCCTGCTTTCACCACCACACTCTCTTCCCAAACATGGCTTCATGTACAACAACAACTTCATCATCTTCTCTTATGCTAACACACCCCTCTTCTTCTATTCTCACCCCCCAAGACCTTTCTCCTTCTTCTCTCCGTTCTTTTCCCAGAACCTTCTTCCTCTCTCCCCTCGTTTTGAAGCCTACTAAGTCGGTTAATCTAACCTACCAGTCTAGGTCTTCGATTTTACTTGCTTCCGCTGTCACTGCTGATGTTGCTGAAACTGTTGATGAAGATGAGAAGGATGGTGTTGATGATGGTGTTGCTGAAACTGTGACTGTTGTTACTACTAAGCCTAAGAAAGGGAAAGCTGCATTACTTCTCAAGAGTGATAGGGTGAGATCTAAGAGATTCTTGGAAATTCAAAAATTGAGGGAGTTTAAGAAAGAGTACGACTTGAAGACAGCAATTTCTTTGGTAAAAGAAACAGCTAAAACCAAGTTTGTAGAAACAGTAGAAGCCCATTTCCGCCTCAACATTGACCCTAAATATAATGATCAACAGTTAAGAGCTACAGTAAGTCTGCCGAAGGGAACTGGAAAACCCATAAAAATAGCCGTTCTTACTCAAGGTGAAAAGTTCGATGAAGCAAAACTTGCAGGAGCAGATTTGGTAGGTGGAGAGGATCTGATAGAAGAGATAAAAGGAGGATACATGGAATTTGATAAATTAATTGCTTCTCCAGATATGATGCCTAAGGTTGCTAGCCTAGGGAAGATTCTGGGGCCAAGAGGACTCATGCCAAATCCAAAAGCTGGCACTGTAACAGCTAATATTACTCAGGCTATAGCAGAATTCAAACAGGGAAAAGTTGAATACAGGGCAGATAAAACAGGAATCGTTCACTTGCCTTTTGGAAAAGCCGATTTTTCAGAAGAGGATCTTCTTACAAACTTGCTCTCTGCAATAAAATCAGTAGAGGCAAACAAACCATCGGGTGCGAAAGGTGTGTACTGGAAAAGTGCGCACATATGCTCAGCAATGGGGCCTTCAGTCAGGTTAAATATCAAGGAGATGCTTGATTACAGACTTCAATCAGAATAG

Protein sequence

>Msa0676570

MSCFHHHTLFPNMASCTTTTSSSSLMLTHPSSSILTPQDLSPSSLRSFPRTFFLSPLVLKPTKSVNLTYQSRSSILLASAVTADVAETVDEDEKDGVDDGVAETVTVVTTKPKKGKAALLLKSDRVRSKRFLEIQKLREFKKEYDLKTAISLVKETAKTKFVETVEAHFRLNIDPKYNDQQLRATVSLPKGTGKPIKIAVLTQGEKFDEAKLAGADLVGGEDLIEEIKGGYMEFDKLIASPDMMPKVASLGKILGPRGLMPNPKAGTVTANITQAIAEFKQGKVEYRADKTGIVHLPFGKADFSEEDLLTNLLSAIKSVEANKPSGAKGVYWKSAHICSAMGPSVRLNIKEMLDYRLQSE*