AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0480900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480900 MtrunA17_Chr4g0056891 98.276 232 4 0 4 235 1 232 1.54e-170 468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0480900 AT1G62850.2 66.518 224 63 4 16 235 20 235 6.30e-94 275
Msa0480900 AT1G62850.3 66.518 224 63 4 16 235 20 235 6.30e-94 275
Msa0480900 AT1G62850.4 66.667 195 53 4 16 206 20 206 2.34e-80 239

Find 93 sgRNAs with CRISPR-Local

Find 396 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTTTAATACTACCATAAT+TGG 0.127862 3_3:-86557682 Msa0480900:three_prime_UTR
TCCAATTATGGTAGTATTAA+AGG 0.179603 3_3:+86557681 None:intergenic
GATAGATAGTTTAAAGATTC+TGG 0.203643 3_3:+86557835 None:intergenic
GCTTCCTCAGCTTCAGATTC+TGG 0.206596 3_3:-86562761 Msa0480900:CDS
TAGATCGATGTTCGGCTTCT+TGG 0.249968 3_3:+86562693 None:intergenic
AAACTTCTGTGTTCTAGTTT+TGG 0.258270 3_3:+86559485 None:intergenic
ATGTATGATGTATCCAATTA+TGG 0.303636 3_3:+86557669 None:intergenic
GGATGCTTTGGCAAAGCTTC+AGG 0.322950 3_3:-86559366 Msa0480900:intron
TGCTCTTCTGAGGGAGGTGG+TGG 0.329151 3_3:+86558126 None:intergenic
GAATTCGACATGTGTCTTTA+CGG 0.331461 3_3:-86557429 Msa0480900:three_prime_UTR
AATGTTACCTTCACTTGATA+AGG 0.333324 3_3:-86557277 Msa0480900:three_prime_UTR
AAGCAATGTACTACTGGAAT+TGG 0.353382 3_3:+86557316 None:intergenic
ATTAATGTTGTTTGAATCCT+TGG 0.353412 3_3:+86557609 None:intergenic
TTTGTACTTGGGAGAAGGTT+GGG 0.373564 3_3:-86557375 Msa0480900:three_prime_UTR
GTTAAAGAAATATTTATGTT+TGG 0.375505 3_3:+86557141 None:intergenic
GTCAGCTTAAGCCGCAATTA+CGG 0.379476 3_3:-86557452 Msa0480900:three_prime_UTR
ACCTTCACTTGATAAGGGTT+TGG 0.380483 3_3:-86557271 Msa0480900:three_prime_UTR
TCAGCTTAAGCCGCAATTAC+GGG 0.387371 3_3:-86557451 Msa0480900:three_prime_UTR
CTTCCTCAGCTTCAGATTCT+GGG 0.393020 3_3:-86562760 Msa0480900:CDS
CCCATTCCTAAAATCACTTT+GGG 0.395822 3_3:-86562650 Msa0480900:intron
TGAAGAGAGGAGAGGAAGAA+AGG 0.398042 3_3:+86562821 None:intergenic
CCCCATTCCTAAAATCACTT+TGG 0.402112 3_3:-86562651 Msa0480900:CDS
ATGTTACCTTCACTTGATAA+GGG 0.403161 3_3:-86557276 Msa0480900:three_prime_UTR
AATTCGACATGTGTCTTTAC+GGG 0.406954 3_3:-86557428 Msa0480900:three_prime_UTR
TGAAACAAAACTTGGATGTA+TGG 0.414686 3_3:-86562947 Msa0480900:exon
ATAGTAAAGCAATGTACTAC+TGG 0.416302 3_3:+86557310 None:intergenic
AGAGGAAGAAAGGGCGAGAA+AGG 0.436039 3_3:+86562831 None:intergenic
GAAGGTTGGGATTGTGGACG+TGG 0.441007 3_3:-86562978 Msa0480900:five_prime_UTR
GAAGAGAGGAGAGGAAGAAA+GGG 0.445403 3_3:+86562822 None:intergenic
AAAGAAGAAGTAAAAGTAGT+TGG 0.447871 3_3:-86557875 Msa0480900:CDS
CGGCTTCTTGGAGAAGCTCA+TGG 0.448424 3_3:+86562705 None:intergenic
ATTGGCTAAGTGAAAGGGTC+AGG 0.448821 3_3:-86560308 Msa0480900:CDS
GGGTAACATTGAGGATGCTT+TGG 0.448922 3_3:-86559378 Msa0480900:CDS
AAAAGAAAAGAAAGAAGGTT+GGG 0.449210 3_3:-86562991 Msa0480900:five_prime_UTR
GAAAAGAAAAGAAAGAAGGT+TGG 0.452513 3_3:-86562992 Msa0480900:five_prime_UTR
CAGGGAGAAGATTATGCAAA+TGG 0.463990 3_3:-86560289 Msa0480900:intron
AAGAAAGAAGGTTGGGATTG+TGG 0.466490 3_3:-86562984 Msa0480900:five_prime_UTR
GAGCTACGATTTAATGCAAT+AGG 0.468093 3_3:-86557526 Msa0480900:three_prime_UTR
AAGAAGAAGTAAAAGTAGTT+GGG 0.476573 3_3:-86557874 Msa0480900:CDS
GAGACGTTTGTGCTCTCCTA+TGG 0.480721 3_3:+86557932 None:intergenic
TTTAAACCTGAAACAAAACT+TGG 0.487818 3_3:-86562955 Msa0480900:five_prime_UTR
ACATCATGACATCAGATGAT+TGG 0.489650 3_3:-86557644 Msa0480900:three_prime_UTR
GTAATGCCAAGAAGAGAAGA+AGG 0.499941 3_3:+86562860 None:intergenic
GTCGACATGCGGTTCAATGT+TGG 0.505525 3_3:-86560339 Msa0480900:CDS
AAAAGAAAAGAAAAGAAAGA+AGG 0.508611 3_3:-86562996 Msa0480900:five_prime_UTR
TTGTAGATAAAAGCAACATA+TGG 0.511382 3_3:+86557484 None:intergenic
CAAAACTTGGATGTATGGTA+TGG 0.514654 3_3:-86562942 Msa0480900:exon
GGCTTCAACAACCACTAGAA+TGG 0.521120 3_3:-86562921 Msa0480900:CDS
ATGCAGCAATAAAACCACTT+TGG 0.530385 3_3:+86557571 None:intergenic
TTTCTTCAGGGGTAACATTG+AGG 0.534771 3_3:-86559387 Msa0480900:intron
GCTCTTCTGAGGGAGGTGGT+GGG 0.534879 3_3:+86558127 None:intergenic
GCGCATCGAATTGCAGTGGC+GGG 0.539361 3_3:+86562782 None:intergenic
AGTATCCTCTCGGCTTTCGC+AGG 0.539470 3_3:-86562729 Msa0480900:CDS
AGCGGAGATAGATCGATGTT+CGG 0.541156 3_3:+86562685 None:intergenic
ATTGAACCGCATGTCGACCT+TGG 0.541896 3_3:+86560344 None:intergenic
TTTGCCAGAAGTGGAGGACC+TGG 0.545145 3_3:-86562503 Msa0480900:CDS
GGCACATTGGCTAAGTGAAA+GGG 0.546502 3_3:-86560313 Msa0480900:CDS
TATTCCTTTCACCATTCTAG+TGG 0.547459 3_3:+86562910 None:intergenic
CACTTCTGTAGGGCTGCCAT+AGG 0.548523 3_3:-86557948 Msa0480900:intron
AAAATCGTATGAACAAGGAT+GGG 0.550226 3_3:-86559527 Msa0480900:CDS
TGCCAGAAGTGGAGGACCTG+GGG 0.553451 3_3:-86562501 Msa0480900:CDS
AGGCACATTGGCTAAGTGAA+AGG 0.561094 3_3:-86560314 Msa0480900:CDS
TTGCCAGAAGTGGAGGACCT+GGG 0.565073 3_3:-86562502 Msa0480900:CDS
TACGGGAAGTCAACAACCCT+GGG 0.571478 3_3:-86557411 Msa0480900:three_prime_UTR
AACAACATTAATCAACATGA+AGG 0.575498 3_3:-86557598 Msa0480900:three_prime_UTR
GCCAAACCCTTATCAAGTGA+AGG 0.576756 3_3:+86557270 None:intergenic
CTATCAGAAACTAAATCACA+AGG 0.584249 3_3:+86557350 None:intergenic
TAATGCCAAGAAGAGAAGAA+GGG 0.585098 3_3:+86562861 None:intergenic
CATGCGGTTCAATGTTGGAA+AGG 0.591093 3_3:-86560334 Msa0480900:CDS
ATGTCGAATTCCCGTAATTG+CGG 0.592225 3_3:+86557441 None:intergenic
AGTGTTGGTCAAATTTGTGA+TGG 0.593127 3_3:-86557548 Msa0480900:three_prime_UTR
AGCGCATCGAATTGCAGTGG+CGG 0.596376 3_3:+86562781 None:intergenic
GGAACAACAAAGTATCCTCT+CGG 0.606425 3_3:-86562739 Msa0480900:CDS
CAAACGTCTCAAAAGCAAGA+AGG 0.607475 3_3:-86557919 Msa0480900:CDS
TTACGGGAAGTCAACAACCC+TGG 0.618750 3_3:-86557412 Msa0480900:three_prime_UTR
TCAATGTTGGAAAGGCACAT+TGG 0.618902 3_3:-86560326 Msa0480900:CDS
AAATCGTATGAACAAGGATG+GGG 0.621165 3_3:-86559526 Msa0480900:CDS
GTTCCCAGAATCTGAAGCTG+AGG 0.628074 3_3:+86562757 None:intergenic
AATGCCAAGAAGAGAAGAAG+GGG 0.634269 3_3:+86562862 None:intergenic
TTGGCTAAGTGAAAGGGTCA+GGG 0.636328 3_3:-86560307 Msa0480900:CDS
CGAGCGCTGTAATTGAAGAG+AGG 0.641440 3_3:+86562808 None:intergenic
ACAACCACTAGAATGGTGAA+AGG 0.641721 3_3:-86562914 Msa0480900:CDS
GCCAGAAGTGGAGGACCTGG+GGG 0.642506 3_3:-86562500 Msa0480900:CDS
AACATGAAGGATATCCAAAG+TGG 0.646604 3_3:-86557585 Msa0480900:three_prime_UTR
ATTGGTTGAAGATATAACCA+AGG 0.657210 3_3:-86557626 Msa0480900:three_prime_UTR
AATTGCGGCTTAAGCTGACA+AGG 0.663038 3_3:+86557456 None:intergenic
TATCAGAAACTAAATCACAA+GGG 0.677403 3_3:+86557351 None:intergenic
GCTGTAATTGAAGAGAGGAG+AGG 0.684565 3_3:+86562813 None:intergenic
GGAAGCGCATCGAATTGCAG+TGG 0.684620 3_3:+86562778 None:intergenic
ATGGACCTGCGAAAGCCGAG+AGG 0.719112 3_3:+86562724 None:intergenic
TGAACACCAAGGTCGACATG+CGG 0.719333 3_3:-86560350 Msa0480900:CDS
ATGCCAAGAAGAGAAGAAGG+GGG 0.741371 3_3:+86562863 None:intergenic
TGATTGTACAGTGAACACCA+AGG 0.820851 3_3:-86560361 Msa0480900:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAAAAAAATATTAGA+TGG - chr3_3:86560203-86560222 Msa0480900:intron 10.0%
!! AATATGTTTCTTATAAATAA+TGG + chr3_3:86560468-86560487 None:intergenic 10.0%
!! TTTATAAGAAACATATTTAT+AGG - chr3_3:86560471-86560490 Msa0480900:intron 10.0%
!!! TGATTTTTATATAGTTTTGT+TGG - chr3_3:86557605-86557624 Msa0480900:three_prime_UTR 15.0%
!!! GATTTTTATATAGTTTTGTT+GGG - chr3_3:86557606-86557625 Msa0480900:three_prime_UTR 15.0%
!!! AATTCATTTTATAAGGTATT+AGG - chr3_3:86557749-86557768 Msa0480900:intron 15.0%
!! TAAAATAAATCAATCTTCAA+AGG - chr3_3:86557981-86558000 Msa0480900:intron 15.0%
!!! TATCTAATGTAAATTTTGTA+GGG - chr3_3:86559395-86559414 Msa0480900:intron 15.0%
!! TAGTTAAATTTCATACAAAA+TGG - chr3_3:86560046-86560065 Msa0480900:intron 15.0%
!! AGTTAAATTTCATACAAAAT+GGG - chr3_3:86560047-86560066 Msa0480900:intron 15.0%
!! TATTTATAGAGAAAAAGAAA+GGG + chr3_3:86560296-86560315 None:intergenic 15.0%
!! ATATTTATAGAGAAAAAGAA+AGG + chr3_3:86560297-86560316 None:intergenic 15.0%
!! ATAAATATTTGTAAGCTAAT+AGG - chr3_3:86560309-86560328 Msa0480900:CDS 15.0%
!! TAAATATTTGTAAGCTAATA+GGG - chr3_3:86560310-86560329 Msa0480900:CDS 15.0%
!! AATACAAAAATTCAATAGAA+GGG + chr3_3:86560703-86560722 None:intergenic 15.0%
!! AAATACAAAAATTCAATAGA+AGG + chr3_3:86560704-86560723 None:intergenic 15.0%
!! CATATAATTATAACTTCAAA+GGG + chr3_3:86561802-86561821 None:intergenic 15.0%
!! ACATATAATTATAACTTCAA+AGG + chr3_3:86561803-86561822 None:intergenic 15.0%
!!! TTTTATTAATTCAACTGTTT+TGG - chr3_3:86562954-86562973 Msa0480900:exon 15.0%
!! GTTAAAGAAATATTTATGTT+TGG + chr3_3:86563017-86563036 None:intergenic 15.0%
!! AAAAGAAAAGAAAAGAAAGA+AGG - chr3_3:86557159-86557178 Msa0480900:three_prime_UTR 20.0%
!!! GTGTAAGAATTCATTTTATA+AGG - chr3_3:86557742-86557761 Msa0480900:intron 20.0%
!! TTAATTCAACATGATATACA+AGG + chr3_3:86557799-86557818 None:intergenic 20.0%
!! GAAAAAAATCTTAATAGCTA+AGG - chr3_3:86557833-86557852 Msa0480900:three_prime_UTR 20.0%
!! AAATACTTTAAACATCTTGA+AGG - chr3_3:86558199-86558218 Msa0480900:intron 20.0%
!! AAAACATTCATAAATAACAG+AGG - chr3_3:86558561-86558580 Msa0480900:intron 20.0%
!! AAACATTCATAAATAACAGA+GGG - chr3_3:86558562-86558581 Msa0480900:intron 20.0%
!! TATAATTGTTGAGAAAAAAG+TGG - chr3_3:86558651-86558670 Msa0480900:intron 20.0%
!!! CTATTTTAAGTTTTTTTGCT+TGG - chr3_3:86558921-86558940 Msa0480900:intron 20.0%
!! TCAATTTAAACTGATATGAA+GGG + chr3_3:86559084-86559103 None:intergenic 20.0%
!!! TTTTGTAATTTGTAGGATTA+TGG + chr3_3:86559355-86559374 None:intergenic 20.0%
!! CAAAATTTACATTAGATACA+GGG + chr3_3:86559393-86559412 None:intergenic 20.0%
!! ACAAAATTTACATTAGATAC+AGG + chr3_3:86559394-86559413 None:intergenic 20.0%
!!! GTATCTAATGTAAATTTTGT+AGG - chr3_3:86559394-86559413 Msa0480900:intron 20.0%
!!! ATCTAATGTAAATTTTGTAG+GGG - chr3_3:86559396-86559415 Msa0480900:intron 20.0%
!!! ACTGAAGTATTTAAGTTTTA+AGG + chr3_3:86560888-86560907 None:intergenic 20.0%
!!! TTTAAAATGCCACTATTATT+GGG + chr3_3:86561019-86561038 None:intergenic 20.0%
!!! ATTTAAAATGCCACTATTAT+TGG + chr3_3:86561020-86561039 None:intergenic 20.0%
!!! TTCTATTACTTATTTTTCTC+TGG - chr3_3:86561112-86561131 Msa0480900:intron 20.0%
!!! TAGAATTTGATTTACTATGA+GGG + chr3_3:86561278-86561297 None:intergenic 20.0%
!!! TTAGAATTTGATTTACTATG+AGG + chr3_3:86561279-86561298 None:intergenic 20.0%
!!! AAATCAAATTCTAAGAGTTT+TGG - chr3_3:86561285-86561304 Msa0480900:intron 20.0%
!!! ATTCTTGATTGAAGTATTAA+AGG - chr3_3:86561362-86561381 Msa0480900:intron 20.0%
!! TTCTTCTTTACTATCTATAT+TGG - chr3_3:86561413-86561432 Msa0480900:intron 20.0%
!! TAATTATATGTAACTCTTTG+TGG - chr3_3:86561812-86561831 Msa0480900:intron 20.0%
!! TGTAATTGAAAAGGAATTAA+GGG + chr3_3:86561903-86561922 None:intergenic 20.0%
!!! TGTTTTGAAAGATATAACAA+TGG - chr3_3:86561946-86561965 Msa0480900:intron 20.0%
!! ATACATATTCTTTATTCTTC+AGG - chr3_3:86562096-86562115 Msa0480900:intron 20.0%
!!! TTATTCTTCAGGTTAAAATA+CGG - chr3_3:86562107-86562126 Msa0480900:intron 20.0%
!! AGAATGACATAAAAGAAATT+TGG + chr3_3:86562404-86562423 None:intergenic 20.0%
! AAAAGAAAAGAAAGAAGGTT+GGG - chr3_3:86557164-86557183 Msa0480900:three_prime_UTR 25.0%
! TTTAAACCTGAAACAAAACT+TGG - chr3_3:86557200-86557219 Msa0480900:three_prime_UTR 25.0%
!!! GTCTATGTTTTTTTTGCTTA+AGG - chr3_3:86557720-86557739 Msa0480900:intron 25.0%
! TTAAAACTCAATTGAAGCTA+CGG + chr3_3:86557885-86557904 None:intergenic 25.0%
! ATTAAATCAGGTAAAAGCTA+CGG + chr3_3:86557921-86557940 None:intergenic 25.0%
!! ATGATTTCAGTAGAATGTTT+TGG - chr3_3:86558451-86558470 Msa0480900:intron 25.0%
! ATAGCTAAGAAAATCAACAT+GGG + chr3_3:86558905-86558924 None:intergenic 25.0%
! AATAGCTAAGAAAATCAACA+TGG + chr3_3:86558906-86558925 None:intergenic 25.0%
! GTTCATGAATACATAAGTAA+AGG + chr3_3:86558984-86559003 None:intergenic 25.0%
! GTCAATTTAAACTGATATGA+AGG + chr3_3:86559085-86559104 None:intergenic 25.0%
! ACTAAGTTGTTTATCCAAAT+AGG - chr3_3:86559329-86559348 Msa0480900:intron 25.0%
!! ATTCGTTTTATATCCATGTT+GGG - chr3_3:86559437-86559456 Msa0480900:intron 25.0%
!! TTTAAGTTATTAACTGCAAG+TGG + chr3_3:86559761-86559780 None:intergenic 25.0%
! AATTTATGACTCTTTACCTA+CGG + chr3_3:86560342-86560361 None:intergenic 25.0%
! ACATAAACCTTAACTTTGTA+CGG - chr3_3:86560439-86560458 Msa0480900:intron 25.0%
!!! GTATTTTTTTCATTGTATGC+TGG - chr3_3:86560718-86560737 Msa0480900:intron 25.0%
! TTATTCTTTCCCAATAATAG+TGG - chr3_3:86561007-86561026 Msa0480900:intron 25.0%
!!! TATTACTTATTTTTCTCTGG+TGG - chr3_3:86561115-86561134 Msa0480900:intron 25.0%
!! TCATTCATTTTCTTCATTCT+CGG - chr3_3:86561247-86561266 Msa0480900:intron 25.0%
!!! ACTTTTGTTATAAAGACAGT+AGG + chr3_3:86561480-86561499 None:intergenic 25.0%
!!! CTTTTCTTTGAGGAAATTAT+TGG + chr3_3:86561627-86561646 None:intergenic 25.0%
! AAATGGATCTTATATTAAGG+GGG + chr3_3:86561705-86561724 None:intergenic 25.0%
! GAAATGGATCTTATATTAAG+GGG + chr3_3:86561706-86561725 None:intergenic 25.0%
! GGAAATGGATCTTATATTAA+GGG + chr3_3:86561707-86561726 None:intergenic 25.0%
! TGGAAATGGATCTTATATTA+AGG + chr3_3:86561708-86561727 None:intergenic 25.0%
! GTAATTGAAAAGGAATTAAG+GGG + chr3_3:86561902-86561921 None:intergenic 25.0%
! GTGTAATTGAAAAGGAATTA+AGG + chr3_3:86561904-86561923 None:intergenic 25.0%
!! TGCTTTTCTGTTTATGAAAT+GGG - chr3_3:86561969-86561988 Msa0480900:intron 25.0%
! TTATGAAATGGGGAAAAAAT+AGG - chr3_3:86561980-86561999 Msa0480900:intron 25.0%
! AAAGAAGAAGTAAAAGTAGT+TGG - chr3_3:86562280-86562299 Msa0480900:intron 25.0%
! AAGAAGAAGTAAAAGTAGTT+GGG - chr3_3:86562281-86562300 Msa0480900:intron 25.0%
! GATAGATAGTTTAAAGATTC+TGG + chr3_3:86562323-86562342 None:intergenic 25.0%
!! AAAAGAAATTTGGTAATAGC+AGG + chr3_3:86562394-86562413 None:intergenic 25.0%
! TCCTTTAATACTACCATAAT+TGG - chr3_3:86562473-86562492 Msa0480900:intron 25.0%
! TCCAATTATGGTAGTATTAA+AGG + chr3_3:86562477-86562496 None:intergenic 25.0%
! ATGTATGATGTATCCAATTA+TGG + chr3_3:86562489-86562508 None:intergenic 25.0%
!! ATTAATGTTGTTTGAATCCT+TGG + chr3_3:86562549-86562568 None:intergenic 25.0%
! AACAACATTAATCAACATGA+AGG - chr3_3:86562557-86562576 Msa0480900:intron 25.0%
! TTGTAGATAAAAGCAACATA+TGG + chr3_3:86562674-86562693 None:intergenic 25.0%
! TATCAGAAACTAAATCACAA+GGG + chr3_3:86562807-86562826 None:intergenic 25.0%
GAAAAGAAAAGAAAGAAGGT+TGG - chr3_3:86557163-86557182 Msa0480900:three_prime_UTR 30.0%
!!! ATACATCCAAGTTTTGTTTC+AGG + chr3_3:86557209-86557228 None:intergenic 30.0%
TGAAACAAAACTTGGATGTA+TGG - chr3_3:86557208-86557227 Msa0480900:three_prime_UTR 30.0%
TCAAGGAATGAGAAAATTGA+TGG + chr3_3:86557543-86557562 None:intergenic 30.0%
GGAGTAGAAATCATATAGAA+AGG - chr3_3:86557770-86557789 Msa0480900:intron 30.0%
AATAGCTAAGGAAATCAACA+TGG - chr3_3:86557845-86557864 Msa0480900:three_prime_UTR 30.0%
ATAGCTAAGGAAATCAACAT+GGG - chr3_3:86557846-86557865 Msa0480900:three_prime_UTR 30.0%
!!! TTGAGTTTTAAGACATTTCC+TGG - chr3_3:86557894-86557913 Msa0480900:CDS 30.0%
GCAATGTTGGAAATTAAATC+AGG + chr3_3:86557933-86557952 None:intergenic 30.0%
GTTGAAGATGCTTGATATAA+GGG + chr3_3:86557958-86557977 None:intergenic 30.0%
AGTTGAAGATGCTTGATATA+AGG + chr3_3:86557959-86557978 None:intergenic 30.0%
GTATTTGTAGAGTAACAAAG+TGG + chr3_3:86558185-86558204 None:intergenic 30.0%
! AAATGCTTTAAACGTCTTGA+AGG + chr3_3:86558514-86558533 None:intergenic 30.0%
ACAAACATCTTTGAGCAATA+TGG - chr3_3:86558603-86558622 Msa0480900:intron 30.0%
TAGAACAACTCAATCTTCAA+AGG + chr3_3:86558716-86558735 None:intergenic 30.0%
! TACAAGTTGAAGAAGATGTT+TGG - chr3_3:86558734-86558753 Msa0480900:intron 30.0%
! ACAAGTTGAAGAAGATGTTT+GGG - chr3_3:86558735-86558754 Msa0480900:intron 30.0%
CATGAATACATAAGTAAAGG+AGG + chr3_3:86558981-86559000 None:intergenic 30.0%
ACTTATTAGAGCTTATGTAC+TGG - chr3_3:86559103-86559122 Msa0480900:intron 30.0%
TTTGGATAAACAACTTAGTG+AGG + chr3_3:86559328-86559347 None:intergenic 30.0%
!!! CATGTGGTTTTGTAATTTGT+AGG + chr3_3:86559362-86559381 None:intergenic 30.0%
CAACATGGATATAAAACGAA+TGG + chr3_3:86559438-86559457 None:intergenic 30.0%
! CATTCGTTTTATATCCATGT+TGG - chr3_3:86559436-86559455 Msa0480900:intron 30.0%
TGTGTGTATTGTGATATGAT+AGG - chr3_3:86559476-86559495 Msa0480900:intron 30.0%
ATTGTGATATGATAGGAAAC+TGG - chr3_3:86559483-86559502 Msa0480900:intron 30.0%
GACTTTCTGTTATAGAAGAA+AGG - chr3_3:86559578-86559597 Msa0480900:intron 30.0%
TCTGTTATAGAAGAAAGGAT+AGG - chr3_3:86559583-86559602 Msa0480900:intron 30.0%
CTGTTATAGAAGAAAGGATA+GGG - chr3_3:86559584-86559603 Msa0480900:intron 30.0%
TGTTATAGAAGAAAGGATAG+GGG - chr3_3:86559585-86559604 Msa0480900:intron 30.0%
!! AGAGTTGTTTAGAGTCATTT+TGG - chr3_3:86559627-86559646 Msa0480900:intron 30.0%
AAACAGTCAATCACATGATT+TGG + chr3_3:86559922-86559941 None:intergenic 30.0%
!!! AGTATTTTAGGTTTGAAGCA+GGG + chr3_3:86560089-86560108 None:intergenic 30.0%
CTCAAGTTAAAGCACATTAT+TGG + chr3_3:86560144-86560163 None:intergenic 30.0%
TGTAAACAATGTTAGTCATG+AGG + chr3_3:86560422-86560441 None:intergenic 30.0%
ACCATTTGTGTATATCTAGT+TGG - chr3_3:86560525-86560544 Msa0480900:intron 30.0%
CCATTTGTGTATATCTAGTT+GGG - chr3_3:86560526-86560545 Msa0480900:intron 30.0%
TCTTGAATTGTATTGTTCCT+TGG - chr3_3:86560598-86560617 Msa0480900:intron 30.0%
AAAAATCGTATGAACAAGGA+TGG - chr3_3:86560627-86560646 Msa0480900:intron 30.0%
AAAATCGTATGAACAAGGAT+GGG - chr3_3:86560628-86560647 Msa0480900:intron 30.0%
!!! AAACTTCTGTGTTCTAGTTT+TGG + chr3_3:86560673-86560692 None:intergenic 30.0%
AAAATTCAATAGAAGGGAAG+AGG + chr3_3:86560697-86560716 None:intergenic 30.0%
TGAAGAAAAATCGCAGAATA+AGG + chr3_3:86560756-86560775 None:intergenic 30.0%
! TTATTCTGCGATTTTTCTTC+AGG - chr3_3:86560755-86560774 Msa0480900:intron 30.0%
! TATTCTGCGATTTTTCTTCA+GGG - chr3_3:86560756-86560775 Msa0480900:intron 30.0%
!! TCTTGATAGTGAACAAACTA+GGG - chr3_3:86561192-86561211 Msa0480900:intron 30.0%
! CATTCATTTTCTTCATTCTC+GGG - chr3_3:86561248-86561267 Msa0480900:intron 30.0%
!!! ACTATTTTTATGATTCTCCG+AGG - chr3_3:86561313-86561332 Msa0480900:intron 30.0%
TATTAAAGGACTTCGCAAAT+TGG - chr3_3:86561376-86561395 Msa0480900:intron 30.0%
AAGTCCATAGTCTACTTATT+TGG - chr3_3:86561496-86561515 Msa0480900:intron 30.0%
! TTTTCCTTCTCTTTAATCCT+TGG + chr3_3:86561528-86561547 None:intergenic 30.0%
AGGATTAAAGAGAAGGAAAA+TGG - chr3_3:86561528-86561547 Msa0480900:intron 30.0%
GGATTAAAGAGAAGGAAAAT+GGG - chr3_3:86561529-86561548 Msa0480900:intron 30.0%
GATTAAAGAGAAGGAAAATG+GGG - chr3_3:86561530-86561549 Msa0480900:intron 30.0%
AATGGATCTTATATTAAGGG+GGG + chr3_3:86561704-86561723 None:intergenic 30.0%
AACACTTTCTTACCATAAAG+GGG + chr3_3:86561751-86561770 None:intergenic 30.0%
CAACACTTTCTTACCATAAA+GGG + chr3_3:86561752-86561771 None:intergenic 30.0%
TCAACACTTTCTTACCATAA+AGG + chr3_3:86561753-86561772 None:intergenic 30.0%
ATTATAACTTCAAAGGGAAG+AGG + chr3_3:86561796-86561815 None:intergenic 30.0%
CTAAGTCTGTGTAATTGAAA+AGG + chr3_3:86561912-86561931 None:intergenic 30.0%
! GTGCTTTTCTGTTTATGAAA+TGG - chr3_3:86561968-86561987 Msa0480900:intron 30.0%
! GCTTTTCTGTTTATGAAATG+GGG - chr3_3:86561970-86561989 Msa0480900:intron 30.0%
TGTTAGCATTAGAATTACCA+AGG - chr3_3:86562164-86562183 Msa0480900:intron 30.0%
GTTAGCATTAGAATTACCAA+GGG - chr3_3:86562165-86562184 Msa0480900:intron 30.0%
CTTAGTAAGTTCGTGATTAT+TGG - chr3_3:86562345-86562364 Msa0480900:intron 30.0%
!! AATGTGTTACTTGAATCTCT+TGG - chr3_3:86562429-86562448 Msa0480900:intron 30.0%
ATTGGTTGAAGATATAACCA+AGG - chr3_3:86562529-86562548 Msa0480900:intron 30.0%
!! AACATGTCCATTTTTGTACT+TGG - chr3_3:86562768-86562787 Msa0480900:CDS 30.0%
!! ACATGTCCATTTTTGTACTT+GGG - chr3_3:86562769-86562788 Msa0480900:CDS 30.0%
CTATCAGAAACTAAATCACA+AGG + chr3_3:86562808-86562827 None:intergenic 30.0%
ATAGTAAAGCAATGTACTAC+TGG + chr3_3:86562848-86562867 None:intergenic 30.0%
AATGTTACCTTCACTTGATA+AGG - chr3_3:86562878-86562897 Msa0480900:CDS 30.0%
ATGTTACCTTCACTTGATAA+GGG - chr3_3:86562879-86562898 Msa0480900:CDS 30.0%
CAAAACTTGGATGTATGGTA+TGG - chr3_3:86557213-86557232 Msa0480900:three_prime_UTR 35.0%
TATTCCTTTCACCATTCTAG+TGG + chr3_3:86557248-86557267 None:intergenic 35.0%
TAATGCCAAGAAGAGAAGAA+GGG + chr3_3:86557297-86557316 None:intergenic 35.0%
!! CAAAGTGATTTTAGGAATGG+GGG + chr3_3:86557506-86557525 None:intergenic 35.0%
!! CCAAAGTGATTTTAGGAATG+GGG + chr3_3:86557507-86557526 None:intergenic 35.0%
!! CCCAAAGTGATTTTAGGAAT+GGG + chr3_3:86557508-86557527 None:intergenic 35.0%
CCCATTCCTAAAATCACTTT+GGG - chr3_3:86557505-86557524 Msa0480900:three_prime_UTR 35.0%
!! ACCCAAAGTGATTTTAGGAA+TGG + chr3_3:86557509-86557528 None:intergenic 35.0%
! AACAGACCCAAAGTGATTTT+AGG + chr3_3:86557514-86557533 None:intergenic 35.0%
TAAGGAAATCAACATGGGAA+AGG - chr3_3:86557851-86557870 Msa0480900:exon 35.0%
GAAGGTAATTGCTAAGAAAG+AGG + chr3_3:86558060-86558079 None:intergenic 35.0%
TTTGTAGAGTAACAAAGTGG+TGG + chr3_3:86558182-86558201 None:intergenic 35.0%
! AATAAAGTACTCCAACTACC+AGG - chr3_3:86558264-86558283 Msa0480900:intron 35.0%
! TTTATCCCTCCAAGACTTTT+CGG - chr3_3:86558338-86558357 Msa0480900:intron 35.0%
TTTCTTAGTCCGAAAAGTCT+TGG + chr3_3:86558350-86558369 None:intergenic 35.0%
GCATTTGTAGAGAAACAAAG+TGG - chr3_3:86558528-86558547 Msa0480900:intron 35.0%
GCTAGAAGATTATAAAAGCC+TGG - chr3_3:86558806-86558825 Msa0480900:intron 35.0%
AAGATTATAAAAGCCTGGCA+TGG - chr3_3:86558811-86558830 Msa0480900:intron 35.0%
GGCGTTATACTTTGTCATTA+AGG - chr3_3:86558832-86558851 Msa0480900:intron 35.0%
TAAGAAAATCAACATGGGCA+AGG + chr3_3:86558900-86558919 None:intergenic 35.0%
GAATACATAAGTAAAGGAGG+AGG + chr3_3:86558978-86558997 None:intergenic 35.0%
!!! GGAGTGACTTGCTTTTTTAT+AGG + chr3_3:86559011-86559030 None:intergenic 35.0%
!! GTACTGGTATAAGCATTTTG+TGG - chr3_3:86559119-86559138 Msa0480900:intron 35.0%
! AAGCATTTTGTGGTACTACT+TGG - chr3_3:86559129-86559148 Msa0480900:intron 35.0%
TTGTAGGATTATGGCCTATT+TGG + chr3_3:86559346-86559365 None:intergenic 35.0%
TATATCCATGTTGGGATCAT+TGG - chr3_3:86559445-86559464 Msa0480900:intron 35.0%
!! ATTTTGGAGAGTTCTCTCTT+TGG - chr3_3:86559643-86559662 Msa0480900:intron 35.0%
! TTTGTTTCTCCAGCATTGTA+AGG - chr3_3:86559721-86559740 Msa0480900:intron 35.0%
! TTGTTTCTCCAGCATTGTAA+GGG - chr3_3:86559722-86559741 Msa0480900:intron 35.0%
AGTTATTAACTGCAAGTGGA+TGG + chr3_3:86559757-86559776 None:intergenic 35.0%
!! TGATTTGGTAGTGATGAGAA+AGG + chr3_3:86559907-86559926 None:intergenic 35.0%
!!! GCTTTTGAAATGTTGAGTCA+TGG - chr3_3:86559972-86559991 Msa0480900:intron 35.0%
!!! GAGTATTTTAGGTTTGAAGC+AGG + chr3_3:86560090-86560109 None:intergenic 35.0%
!!! AGCTCAAGCAAGAGTATTTT+AGG + chr3_3:86560101-86560120 None:intergenic 35.0%
TTAGATGGACCTCATAAGAA+CGG - chr3_3:86560218-86560237 Msa0480900:intron 35.0%
CCCAACTAGATATACACAAA+TGG + chr3_3:86560529-86560548 None:intergenic 35.0%
GGAGAAAAATCGTATGAACA+AGG - chr3_3:86560623-86560642 Msa0480900:intron 35.0%
AAATCGTATGAACAAGGATG+GGG - chr3_3:86560629-86560648 Msa0480900:intron 35.0%
! ATTCTGCGATTTTTCTTCAG+GGG - chr3_3:86560757-86560776 Msa0480900:intron 35.0%
CTGTAACAGTTATCATTGCT+TGG - chr3_3:86560926-86560945 Msa0480900:intron 35.0%
AACAGTTATCATTGCTTGGT+AGG - chr3_3:86560930-86560949 Msa0480900:intron 35.0%
GAAAGAATAATGTCTCTGGT+AGG + chr3_3:86560997-86561016 None:intergenic 35.0%
TTGGGAAAGAATAATGTCTC+TGG + chr3_3:86561001-86561020 None:intergenic 35.0%
!! TACTTATTTTTCTCTGGTGG+TGG - chr3_3:86561118-86561137 Msa0480900:intron 35.0%
! AGTTTGTTCACTATCAAGAC+AGG + chr3_3:86561191-86561210 None:intergenic 35.0%
!! GTCTTGATAGTGAACAAACT+AGG - chr3_3:86561191-86561210 Msa0480900:intron 35.0%
!! CTTGATAGTGAACAAACTAG+GGG - chr3_3:86561193-86561212 Msa0480900:intron 35.0%
!! TTGATAGTGAACAAACTAGG+GGG - chr3_3:86561194-86561213 Msa0480900:intron 35.0%
TATTATAACTTCCTCGTCCT+CGG + chr3_3:86561333-86561352 None:intergenic 35.0%
!!! TATTCCTTTTGCTGTTGAGT+TGG - chr3_3:86561441-86561460 Msa0480900:intron 35.0%
GGTTCCAAATAAGTAGACTA+TGG + chr3_3:86561503-86561522 None:intergenic 35.0%
! TACTTATTTGGAACCATCCA+AGG - chr3_3:86561508-86561527 Msa0480900:intron 35.0%
!!! CTGTTGTCTCAGTTTTATTG+TGG - chr3_3:86561561-86561580 Msa0480900:intron 35.0%
! GTTGATACGACTTTTCTTTG+AGG + chr3_3:86561637-86561656 None:intergenic 35.0%
TTTCAACAACCCTCTCTTAT+TGG - chr3_3:86561671-86561690 Msa0480900:intron 35.0%
TTCAACAACCCTCTCTTATT+GGG - chr3_3:86561672-86561691 Msa0480900:intron 35.0%
! TCACATGAAACTTCTGGAAA+TGG + chr3_3:86561722-86561741 None:intergenic 35.0%
TGGAATTCACATGAAACTTC+TGG + chr3_3:86561728-86561747 None:intergenic 35.0%
AAAGGAATTAAGGGGAAGAA+AGG + chr3_3:86561894-86561913 None:intergenic 35.0%
! TTCTTCTTTTGCTCTTCTGA+GGG + chr3_3:86562041-86562060 None:intergenic 35.0%
! TTTCTTCTTTTGCTCTTCTG+AGG + chr3_3:86562042-86562061 None:intergenic 35.0%
ATCAAATGTGCACTTCTGTA+GGG - chr3_3:86562197-86562216 Msa0480900:intron 35.0%
ACATCATGACATCAGATGAT+TGG - chr3_3:86562511-86562530 Msa0480900:CDS 35.0%
AACATGAAGGATATCCAAAG+TGG - chr3_3:86562570-86562589 Msa0480900:intron 35.0%
ATGCAGCAATAAAACCACTT+TGG + chr3_3:86562587-86562606 None:intergenic 35.0%
!! GTTTTATTGCTGCATAGTGT+TGG - chr3_3:86562592-86562611 Msa0480900:intron 35.0%
!! AGTGTTGGTCAAATTTGTGA+TGG - chr3_3:86562607-86562626 Msa0480900:intron 35.0%
GAGCTACGATTTAATGCAAT+AGG - chr3_3:86562629-86562648 Msa0480900:intron 35.0%
GAATTCGACATGTGTCTTTA+CGG - chr3_3:86562726-86562745 Msa0480900:CDS 35.0%
AATTCGACATGTGTCTTTAC+GGG - chr3_3:86562727-86562746 Msa0480900:CDS 35.0%
AAAAATGGACATGTTACCCA+GGG + chr3_3:86562763-86562782 None:intergenic 35.0%
AAGCAATGTACTACTGGAAT+TGG + chr3_3:86562842-86562861 None:intergenic 35.0%
AAGAAAGAAGGTTGGGATTG+TGG - chr3_3:86557171-86557190 Msa0480900:three_prime_UTR 40.0%
ACAACCACTAGAATGGTGAA+AGG - chr3_3:86557241-86557260 Msa0480900:three_prime_UTR 40.0%
AATGCCAAGAAGAGAAGAAG+GGG + chr3_3:86557296-86557315 None:intergenic 40.0%
GTAATGCCAAGAAGAGAAGA+AGG + chr3_3:86557298-86557317 None:intergenic 40.0%
! GGAACAACAAAGTATCCTCT+CGG - chr3_3:86557416-86557435 Msa0480900:three_prime_UTR 40.0%
CCCCATTCCTAAAATCACTT+TGG - chr3_3:86557504-86557523 Msa0480900:three_prime_UTR 40.0%
! ACTGTGAATTTTGCCAGAAG+TGG - chr3_3:86557643-86557662 Msa0480900:three_prime_UTR 40.0%
ATCAACATGGGAAAGGATCA+AGG - chr3_3:86557858-86557877 Msa0480900:exon 40.0%
TGATATAAGGGAGGCAATGT+TGG + chr3_3:86557946-86557965 None:intergenic 40.0%
GAAGATGCTTGATATAAGGG+AGG + chr3_3:86557955-86557974 None:intergenic 40.0%
! ATCTGCAACTTGTTCTTCAG+CGG - chr3_3:86558016-86558035 Msa0480900:intron 40.0%
GGTAATTGCTAAGAAAGAGG+TGG + chr3_3:86558057-86558076 None:intergenic 40.0%
ATACACGATGTCTCAACAGA+AGG + chr3_3:86558078-86558097 None:intergenic 40.0%
AAATACCAACACCTGGTAGT+TGG + chr3_3:86558278-86558297 None:intergenic 40.0%
TCAGTTGAAATACCAACACC+TGG + chr3_3:86558400-86558419 None:intergenic 40.0%
TTAGTCCGAAAAGTCTTGGA+GGG + chr3_3:86558346-86558365 None:intergenic 40.0%
GTTGAAATACCAACACCTTG+TGG - chr3_3:86558403-86558422 Msa0480900:intron 40.0%
! ATAAAGTACCTGCAACCACA+AGG + chr3_3:86558421-86558440 None:intergenic 40.0%
! AAGAAGATGTTTGGGATGAC+AGG - chr3_3:86558743-86558762 Msa0480900:intron 40.0%
! TAAGAACGGTGGCTTCATTT+TGG + chr3_3:86558874-86558893 None:intergenic 40.0%
CATGGGCAAGGATTTAAGAA+CGG + chr3_3:86558888-86558907 None:intergenic 40.0%
ATACAGGGTCTAAACACATG+TGG + chr3_3:86559378-86559397 None:intergenic 40.0%
TTCCCTATTCAGGCTCTATT+GGG + chr3_3:86559522-86559541 None:intergenic 40.0%
TTTCCCTATTCAGGCTCTAT+TGG + chr3_3:86559523-86559542 None:intergenic 40.0%
TAGAGCCTGAATAGGGAAAT+AGG - chr3_3:86559524-86559543 Msa0480900:CDS 40.0%
TCGTTCCTATTTCCCTATTC+AGG + chr3_3:86559532-86559551 None:intergenic 40.0%
ATGAACTCCTAACCAAAGCT+AGG + chr3_3:86559677-86559696 None:intergenic 40.0%
GTTAGGAGTTCATAGAACTC+TGG - chr3_3:86559684-86559703 Msa0480900:intron 40.0%
ACTTAATGCCCTTACAATGC+TGG + chr3_3:86559733-86559752 None:intergenic 40.0%
TGATTGTACAGTGAACACCA+AGG - chr3_3:86559794-86559813 Msa0480900:intron 40.0%
! TCAATGTTGGAAAGGCACAT+TGG - chr3_3:86559829-86559848 Msa0480900:intron 40.0%
CAGGGAGAAGATTATGCAAA+TGG - chr3_3:86559866-86559885 Msa0480900:intron 40.0%
ATACATGCACCGTTCTTATG+AGG + chr3_3:86560230-86560249 None:intergenic 40.0%
ATGGCAACCGTACAAAGTTA+AGG + chr3_3:86560449-86560468 None:intergenic 40.0%
GAATTGTATTGTTCCTTGGC+AGG - chr3_3:86560602-86560621 Msa0480900:intron 40.0%
! ATACGATTTTTCTCCTGCCA+AGG + chr3_3:86560618-86560637 None:intergenic 40.0%
! TTGTATGCTGGCTGTAAGAT+TGG - chr3_3:86560730-86560749 Msa0480900:intron 40.0%
TTTCTTCAGGGGTAACATTG+AGG - chr3_3:86560768-86560787 Msa0480900:intron 40.0%
ACTTCAGTGAGACCTAAGAA+TGG - chr3_3:86560900-86560919 Msa0480900:intron 40.0%
CTTCAGTGAGACCTAAGAAT+GGG - chr3_3:86560901-86560920 Msa0480900:intron 40.0%
CTGTTACAGAACCCATTCTT+AGG + chr3_3:86560915-86560934 None:intergenic 40.0%
GTTATAAAGACAGTAGGACG+CGG + chr3_3:86561474-86561493 None:intergenic 40.0%
CCTTCTCTTTAATCCTTGGA+TGG + chr3_3:86561524-86561543 None:intergenic 40.0%
CCATCCAAGGATTAAAGAGA+AGG - chr3_3:86561521-86561540 Msa0480900:intron 40.0%
GGAATTCACCCAATAAGAGA+GGG + chr3_3:86561683-86561702 None:intergenic 40.0%
ATGTGAATTCCACCCCTTTA+TGG - chr3_3:86561736-86561755 Msa0480900:intron 40.0%
ACTTTCTTACCATAAAGGGG+TGG + chr3_3:86561748-86561767 None:intergenic 40.0%
!! AAAGTGTTGAGAGTGAGTGT+CGG - chr3_3:86561763-86561782 Msa0480900:intron 40.0%
CGACATGTCATATCCTAGAA+GGG + chr3_3:86561843-86561862 None:intergenic 40.0%
ACGACATGTCATATCCTAGA+AGG + chr3_3:86561844-86561863 None:intergenic 40.0%
! ATTTGATGGTTACAAGCCCT+TGG + chr3_3:86562184-86562203 None:intergenic 40.0%
! CTACAGAAGTGCACATTTGA+TGG + chr3_3:86562198-86562217 None:intergenic 40.0%
CATCAAATGTGCACTTCTGT+AGG - chr3_3:86562196-86562215 Msa0480900:intron 40.0%
CAAACGTCTCAAAAGCAAGA+AGG - chr3_3:86562236-86562255 Msa0480900:intron 40.0%
ATGTCGAATTCCCGTAATTG+CGG + chr3_3:86562717-86562736 None:intergenic 40.0%
CAAAAATGGACATGTTACCC+AGG + chr3_3:86562764-86562783 None:intergenic 40.0%
CCTTCTCCCAAGTACAAAAA+TGG + chr3_3:86562778-86562797 None:intergenic 40.0%
!! CCATTTTTGTACTTGGGAGA+AGG - chr3_3:86562775-86562794 Msa0480900:CDS 40.0%
! TTTTGTACTTGGGAGAAGGT+TGG - chr3_3:86562779-86562798 Msa0480900:CDS 40.0%
TTTGTACTTGGGAGAAGGTT+GGG - chr3_3:86562780-86562799 Msa0480900:CDS 40.0%
ACCTTCACTTGATAAGGGTT+TGG - chr3_3:86562884-86562903 Msa0480900:CDS 40.0%
!! GGTTTGGCATTTGCTTTTGA+TGG - chr3_3:86562900-86562919 Msa0480900:CDS 40.0%
!! GGCATTTGCTTTTGATGGTA+TGG - chr3_3:86562905-86562924 Msa0480900:CDS 40.0%
GGCTTCAACAACCACTAGAA+TGG - chr3_3:86557234-86557253 Msa0480900:three_prime_UTR 45.0%
ATGCCAAGAAGAGAAGAAGG+GGG + chr3_3:86557295-86557314 None:intergenic 45.0%
GAAGAGAGGAGAGGAAGAAA+GGG + chr3_3:86557336-86557355 None:intergenic 45.0%
TGAAGAGAGGAGAGGAAGAA+AGG + chr3_3:86557337-86557356 None:intergenic 45.0%
GCTGTAATTGAAGAGAGGAG+AGG + chr3_3:86557345-86557364 None:intergenic 45.0%
CTTCCTCAGCTTCAGATTCT+GGG - chr3_3:86557395-86557414 Msa0480900:three_prime_UTR 45.0%
TAGATCGATGTTCGGCTTCT+TGG + chr3_3:86557465-86557484 None:intergenic 45.0%
AGCGGAGATAGATCGATGTT+CGG + chr3_3:86557473-86557492 None:intergenic 45.0%
! GTGAATTTTGCCAGAAGTGG+AGG - chr3_3:86557646-86557665 Msa0480900:three_prime_UTR 45.0%
TTATTGACATTCTGACCCCC+AGG + chr3_3:86557673-86557692 None:intergenic 45.0%
GGGGGTCAGAATGTCAATAA+AGG - chr3_3:86557673-86557692 Msa0480900:three_prime_UTR 45.0%
! TCTGCAACTTGTTCTTCAGC+GGG - chr3_3:86558017-86558036 Msa0480900:intron 45.0%
CAAAGAAGTTTGTACCGTCG+AGG - chr3_3:86558119-86558138 Msa0480900:CDS 45.0%
! TTGTACCGTCGAGGTATTCT+TGG - chr3_3:86558128-86558147 Msa0480900:CDS 45.0%
AGAGTCCAAGAATACCTCGA+CGG + chr3_3:86558136-86558155 None:intergenic 45.0%
CTTAGTCCGAAAAGTCTTGG+AGG + chr3_3:86558347-86558366 None:intergenic 45.0%
! GATGTTTGGGATGACAGGTT+TGG - chr3_3:86558748-86558767 Msa0480900:intron 45.0%
ACAAAGTATAACGCCATGCC+AGG + chr3_3:86558827-86558846 None:intergenic 45.0%
CCATACCAATGATCCCAACA+TGG + chr3_3:86559453-86559472 None:intergenic 45.0%
CCATGTTGGGATCATTGGTA+TGG - chr3_3:86559450-86559469 Msa0480900:intron 45.0%
AAGCCCAATAGAGCCTGAAT+AGG - chr3_3:86559516-86559535 Msa0480900:CDS 45.0%
AGCCCAATAGAGCCTGAATA+GGG - chr3_3:86559517-86559536 Msa0480900:CDS 45.0%
ATAGGGAAATAGGAACGACG+CGG - chr3_3:86559534-86559553 Msa0480900:CDS 45.0%
GAGCGGTATTCTGTTAGGAT+GGG - chr3_3:86559556-86559575 Msa0480900:intron 45.0%
TTGGATAGAGAGCCTAGCTT+TGG - chr3_3:86559662-86559681 Msa0480900:intron 45.0%
!! TAGAGAGCCTAGCTTTGGTT+AGG - chr3_3:86559667-86559686 Msa0480900:intron 45.0%
GTGTTCACTGTACAATCAGC+AGG + chr3_3:86559792-86559811 None:intergenic 45.0%
CATGCGGTTCAATGTTGGAA+AGG - chr3_3:86559821-86559840 Msa0480900:intron 45.0%
! AGGCACATTGGCTAAGTGAA+AGG - chr3_3:86559841-86559860 Msa0480900:intron 45.0%
! GGCACATTGGCTAAGTGAAA+GGG - chr3_3:86559842-86559861 Msa0480900:intron 45.0%
ATTGGCTAAGTGAAAGGGTC+AGG - chr3_3:86559847-86559866 Msa0480900:intron 45.0%
TTGGCTAAGTGAAAGGGTCA+GGG - chr3_3:86559848-86559867 Msa0480900:intron 45.0%
! GCTAATAGGGACTTTTCCGT+AGG - chr3_3:86560323-86560342 Msa0480900:CDS 45.0%
GGGACGAGCTTCTAACTTAT+AGG + chr3_3:86560383-86560402 None:intergenic 45.0%
AGTTAGAAGCTCGTCCCAAT+TGG - chr3_3:86560386-86560405 Msa0480900:intron 45.0%
GTTAGAAGCTCGTCCCAATT+GGG - chr3_3:86560387-86560406 Msa0480900:intron 45.0%
GGGTAACATTGAGGATGCTT+TGG - chr3_3:86560777-86560796 Msa0480900:intron 45.0%
!!! ATTTTTCTCTGGTGGTGGTG+AGG - chr3_3:86561123-86561142 Msa0480900:intron 45.0%
TTTATGATTCTCCGAGGACG+AGG - chr3_3:86561319-86561338 Msa0480900:intron 45.0%
!!! TCCTTTTGCTGTTGAGTTGG+TGG - chr3_3:86561444-86561463 Msa0480900:intron 45.0%
TCCACCAACTCAACAGCAAA+AGG + chr3_3:86561448-86561467 None:intergenic 45.0%
AAGAGAAGGAAAATGGGGTG+TGG - chr3_3:86561535-86561554 Msa0480900:intron 45.0%
GGGAATTCACCCAATAAGAG+AGG + chr3_3:86561684-86561703 None:intergenic 45.0%
! CTTTGTGGTTAGTCCCTTCT+AGG - chr3_3:86561827-86561846 Msa0480900:intron 45.0%
!! TTCTTTTGCTCTTCTGAGGG+AGG + chr3_3:86562038-86562057 None:intergenic 45.0%
AATTGCGGCTTAAGCTGACA+AGG + chr3_3:86562702-86562721 None:intergenic 45.0%
GTCAGCTTAAGCCGCAATTA+CGG - chr3_3:86562703-86562722 Msa0480900:CDS 45.0%
TCAGCTTAAGCCGCAATTAC+GGG - chr3_3:86562704-86562723 Msa0480900:CDS 45.0%
GCCAAACCCTTATCAAGTGA+AGG + chr3_3:86562888-86562907 None:intergenic 45.0%
!! TATATATATATATATATTCA+AGG + chr3_3:86557560-86557579 None:intergenic 5.0%
!! AAGAAGGGGGTGTTGAAGAG+AGG + chr3_3:86557282-86557301 None:intergenic 50.0%
ACACCCCCTTCTTCTCTTCT+TGG - chr3_3:86557289-86557308 Msa0480900:three_prime_UTR 50.0%
AGAGGAAGAAAGGGCGAGAA+AGG + chr3_3:86557327-86557346 None:intergenic 50.0%
! CGAGCGCTGTAATTGAAGAG+AGG + chr3_3:86557350-86557369 None:intergenic 50.0%
GCTTCCTCAGCTTCAGATTC+TGG - chr3_3:86557394-86557413 Msa0480900:three_prime_UTR 50.0%
! GTTCCCAGAATCTGAAGCTG+AGG + chr3_3:86557401-86557420 None:intergenic 50.0%
!! AATGGGGGCGTTGTAATCAG+CGG + chr3_3:86557491-86557510 None:intergenic 50.0%
TCAGGTAAAAGCTACGGTCC+AGG + chr3_3:86557915-86557934 None:intergenic 50.0%
GTACTCCAACTACCAGGTGT+TGG - chr3_3:86558270-86558289 Msa0480900:intron 50.0%
TACCAACACCTTGTGGTTGC+AGG - chr3_3:86558410-86558429 Msa0480900:intron 50.0%
TACCTGCAACCACAAGGTGT+TGG + chr3_3:86558415-86558434 None:intergenic 50.0%
AGAGGGCAAGAATATCTCGC+TGG - chr3_3:86558579-86558598 Msa0480900:intron 50.0%
GGGCAAGGATTTAAGAACGG+TGG + chr3_3:86558885-86558904 None:intergenic 50.0%
GTGTAGCAGAGAGGTAACAG+AGG + chr3_3:86559032-86559051 None:intergenic 50.0%
TCACTCACTGTGTAGCAGAG+AGG + chr3_3:86559041-86559060 None:intergenic 50.0%
GGAGCGGTATTCTGTTAGGA+TGG - chr3_3:86559555-86559574 Msa0480900:intron 50.0%
TGAACACCAAGGTCGACATG+CGG - chr3_3:86559805-86559824 Msa0480900:intron 50.0%
ATTGAACCGCATGTCGACCT+TGG + chr3_3:86559814-86559833 None:intergenic 50.0%
GTCGACATGCGGTTCAATGT+TGG - chr3_3:86559816-86559835 Msa0480900:intron 50.0%
GTTGAGTCATGGCGTAGTAG+AGG - chr3_3:86559983-86560002 Msa0480900:intron 50.0%
GGATGCTTTGGCAAAGCTTC+AGG - chr3_3:86560789-86560808 Msa0480900:intron 50.0%
CTAGGGGGAAATTGCAGCTT+AGG - chr3_3:86561209-86561228 Msa0480900:intron 50.0%
!! TTTTGCTCTTCTGAGGGAGG+TGG + chr3_3:86562035-86562054 None:intergenic 50.0%
GAGACGTTTGTGCTCTCCTA+TGG + chr3_3:86562226-86562245 None:intergenic 50.0%
TTACGGGAAGTCAACAACCC+TGG - chr3_3:86562743-86562762 Msa0480900:CDS 50.0%
TACGGGAAGTCAACAACCCT+GGG - chr3_3:86562744-86562763 Msa0480900:CDS 50.0%
GAAGGTTGGGATTGTGGACG+TGG - chr3_3:86557177-86557196 Msa0480900:three_prime_UTR 55.0%
AGCGCATCGAATTGCAGTGG+CGG + chr3_3:86557377-86557396 None:intergenic 55.0%
! GGAAGCGCATCGAATTGCAG+TGG + chr3_3:86557380-86557399 None:intergenic 55.0%
AGTATCCTCTCGGCTTTCGC+AGG - chr3_3:86557426-86557445 Msa0480900:three_prime_UTR 55.0%
CGGCTTCTTGGAGAAGCTCA+TGG + chr3_3:86557453-86557472 None:intergenic 55.0%
TTTGCCAGAAGTGGAGGACC+TGG - chr3_3:86557652-86557671 Msa0480900:three_prime_UTR 55.0%
TTGCCAGAAGTGGAGGACCT+GGG - chr3_3:86557653-86557672 Msa0480900:three_prime_UTR 55.0%
GGATGACAGGTTTGGCAGCT+TGG - chr3_3:86558756-86558775 Msa0480900:intron 55.0%
GAAATAGGAACGACGCGGAG+CGG - chr3_3:86559539-86559558 Msa0480900:intron 55.0%
ACGCGGAGCGGTATTCTGTT+AGG - chr3_3:86559551-86559570 Msa0480900:intron 55.0%
GAGGCAACTGCAGCCCAATT+GGG + chr3_3:86560403-86560422 None:intergenic 55.0%
TGAGGCAACTGCAGCCCAAT+TGG + chr3_3:86560404-86560423 None:intergenic 55.0%
!! TTCTCTGGTGGTGGTGAGGT+TGG - chr3_3:86561127-86561146 Msa0480900:intron 55.0%
!! TCTCTGGTGGTGGTGAGGTT+GGG - chr3_3:86561128-86561147 Msa0480900:intron 55.0%
CACTTCTGTAGGGCTGCCAT+AGG - chr3_3:86562207-86562226 Msa0480900:intron 55.0%
GCGCATCGAATTGCAGTGGC+GGG + chr3_3:86557376-86557395 None:intergenic 60.0%
ATGGACCTGCGAAAGCCGAG+AGG + chr3_3:86557434-86557453 None:intergenic 60.0%
TGCCAGAAGTGGAGGACCTG+GGG - chr3_3:86557654-86557673 Msa0480900:three_prime_UTR 60.0%
! GCTCTTCTGAGGGAGGTGGT+GGG + chr3_3:86562031-86562050 None:intergenic 60.0%
! TGCTCTTCTGAGGGAGGTGG+TGG + chr3_3:86562032-86562051 None:intergenic 60.0%
GCCAGAAGTGGAGGACCTGG+GGG - chr3_3:86557655-86557674 Msa0480900:three_prime_UTR 65.0%
ACCCCCAGGTCCTCCACTTC+TGG + chr3_3:86557659-86557678 None:intergenic 65.0%
!! CTGGTGGTGGTGAGGTTGGG+AGG - chr3_3:86561131-86561150 Msa0480900:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 86557141 86563036 86557141 ID=Msa0480900;Name=Msa0480900
chr3_3 mRNA 86557141 86563036 86557141 ID=Msa0480900-mRNA-1;Parent=Msa0480900;Name=Msa0480900-mRNA-1;_AED=0.25;_eAED=0.25;_QI=82|1|1|1|0.85|0.75|8|619|235
chr3_3 exon 86557141 86557719 86557141 ID=Msa0480900-mRNA-1:exon:24990;Parent=Msa0480900-mRNA-1
chr3_3 exon 86557829 86557959 86557829 ID=Msa0480900-mRNA-1:exon:24989;Parent=Msa0480900-mRNA-1
chr3_3 exon 86558105 86558175 86558105 ID=Msa0480900-mRNA-1:exon:24988;Parent=Msa0480900-mRNA-1
chr3_3 exon 86559367 86559400 86559367 ID=Msa0480900-mRNA-1:exon:24987;Parent=Msa0480900-mRNA-1
chr3_3 exon 86559489 86559553 86559489 ID=Msa0480900-mRNA-1:exon:24986;Parent=Msa0480900-mRNA-1
chr3_3 exon 86560290 86560372 86560290 ID=Msa0480900-mRNA-1:exon:24985;Parent=Msa0480900-mRNA-1
chr3_3 exon 86562483 86562542 86562483 ID=Msa0480900-mRNA-1:exon:24984;Parent=Msa0480900-mRNA-1
chr3_3 exon 86562651 86563036 86562651 ID=Msa0480900-mRNA-1:exon:24983;Parent=Msa0480900-mRNA-1
chr3_3 five_prime_UTR 86562955 86563036 86562955 ID=Msa0480900-mRNA-1:five_prime_utr;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86562651 86562954 86562651 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86562483 86562542 86562483 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86560290 86560372 86560290 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86559489 86559553 86559489 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86559367 86559400 86559367 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86558105 86558175 86558105 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 CDS 86557869 86557959 86557869 ID=Msa0480900-mRNA-1:cds;Parent=Msa0480900-mRNA-1
chr3_3 three_prime_UTR 86557829 86557868 86557829 ID=Msa0480900-mRNA-1:three_prime_utr;Parent=Msa0480900-mRNA-1
chr3_3 three_prime_UTR 86557141 86557719 86557141 ID=Msa0480900-mRNA-1:three_prime_utr;Parent=Msa0480900-mRNA-1
Gene Sequence

>Msa0480900

ATGTATGGTATGGCTTCAACAACCACTAGAATGGTGAAAGGAATATTGCTATTACACCTCTCTTCAACACCCCCTTCTTCTCTTCTTGGCATTACTCGCGACCTTTCTCGCCCTTTCTTCCTCTCCTCTCTTCAATTACAGCGCTCGCATCCCGCCACTGCAATTCGATGCGCTTCCTCAGCTTCAGATTCTGGGAACAACAAAGTATCCTCTCGGCTTTCGCAGGTCCATGAGCTTCTCCAAGAAGCCGAACATCGATCTATCTCCGCTGATTACAACGCCCCCATTCCTAAAATCACTTTGGATCATGTTACTGTGAATTTTGCCAGAAGTGGAGGACCTGGGGGTCAGAATGTCAATAAAGTGAACACCAAGGTCGACATGCGGTTCAATGTTGGAAAGGCACATTGGCTAAGTGAAAGGGTCAGGGAGAAGATTATGCAAATGGAGAAAAATCGTATGAACAAGGATGGGGAGCTTGTGATTTCTTCAACCAAAACTAGAACACAGAAGGGTAACATTGAGGATGCTTTGGCAAAGCTTCAGGAAATCATTGATGCAGCATCTTATGTCCCACCACCTCCCTCAGAAGAGCAAAAGAAGAAAATTGCTAAGTTGGCTGCCATAGGAGAGCACAAACGTCTCAAAAGCAAGAAGGTGCAATCAGATAAGAAAGCGCAAAGAAGAAGTAAAAGTAGTTGGGACTAA

Protein sequence

>Msa0480900

MYGMASTTTRMVKGILLLHLSSTPPSSLLGITRDLSRPFFLSSLQLQRSHPATAIRCASSASDSGNNKVSSRLSQVHELLQEAEHRSISADYNAPIPKITLDHVTVNFARSGGPGGQNVNKVNTKVDMRFNVGKAHWLSERVREKIMQMEKNRMNKDGELVISSTKTRTQKGNIEDALAKLQEIIDAASYVPPPPSEEQKKKIAKLAAIGEHKRLKSKKVQSDKKAQRRSKSSWD*