AlfalfaGEDB | Msa1261420

M. sativa cultivar zhongmu-4 / Msa1261420

KEGG: K03453
GO: GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006820 GO:0006848 GO:0006849 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009534 GO:0009536 GO:0009579 GO:0009941 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0022857 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1901475 GO:1903825 GO:1905039
PFAM: PF01758.19

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1261420	XP_003609202.1	97.317	410	11	0	1	410	1	410	0.0	808

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1261420	sp\|Q1EBV7\|BASS2_ARATH	76.739	417	82	5	1	410	1	409	0.0	603

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0091470	Msa1261420	0.845782	3.276151e-59	-8.615850e-47
Msa0114700	Msa1261420	0.805240	1.468514e-49	-8.615850e-47
Msa0306160	Msa1261420	0.800132	1.663646e-48	-8.615850e-47
Msa0373220	Msa1261420	0.803167	3.966541e-49	-8.615850e-47
Msa0409300	Msa1261420	-0.819362	1.208417e-52	-8.615850e-47
Msa0503220	Msa1261420	-0.816066	6.695952e-52	-8.615850e-47
Msa0855090	Msa1261420	-0.801578	8.429888e-49	-8.615850e-47
Msa0909720	Msa1261420	0.859991	2.818188e-63	-8.615850e-47
Msa1035510	Msa1261420	0.835927	1.262100e-56	-8.615850e-47
Msa1071640	Msa1261420	0.816240	6.123150e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1261420	MtrunA17_Chr4g0062901	97.317	410	11	0	1	410	1	410	0.0	808
Msa1261420	MtrunA17_Chr2g0314491	44.384	365	189	7	46	406	44	398	4.30e-91	280
Msa1261420	MtrunA17_Chr2g0314561	41.053	380	218	5	29	406	12	387	2.12e-85	265
Msa1261420	MtrunA17_Chr7g0234581	41.333	300	171	3	100	395	94	392	1.45e-64	212
Msa1261420	MtrunA17_Chr5g0398471	34.551	356	214	6	62	398	68	423	1.86e-55	189
Msa1261420	MtrunA17_Chr5g0398481	31.412	347	220	7	65	393	68	414	1.79e-48	170

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1261420	AT2G26900.1	76.739	417	82	5	1	410	1	409	0.0	603
Msa1261420	AT1G78560.1	47.305	334	169	5	75	404	71	401	2.22e-90	279
Msa1261420	AT3G25410.1	37.968	374	209	8	30	397	53	409	5.60e-65	214
Msa1261420	AT4G12030.2	36.478	318	188	6	94	397	87	404	6.15e-58	195
Msa1261420	AT4G22840.1	36.184	304	183	4	103	395	98	401	1.84e-57	194
Msa1261420	AT4G12030.4	36.741	313	184	6	99	397	1	313	4.11e-57	190
Msa1261420	AT4G12030.1	37.407	270	158	5	139	397	1	270	1.94e-49	169
Msa1261420	AT4G12030.5	37.407	270	158	5	139	397	1	270	1.94e-49	169
Msa1261420	AT4G12030.3	37.407	270	158	5	139	397	1	270	1.94e-49	169

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Find 139 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAGACCAGTTGCAAG+AGG	0.609602	8_2:+63793091	None:intergenic
AAAATGAGAGTGACAAGTTT+GGG	0.457897	8_2:+63795962	None:intergenic
AAAGTCGTCTTTGTCATCAA+CGG	0.567068	8_2:+63790699	None:intergenic
AACCCAAGCCAAGAGTAAAT+AGG	0.419662	8_2:+63793852	None:intergenic
AACTCTGGGCATGGAAGCCA+TGG	0.467872	8_2:+63795806	None:intergenic
AACTTACTGGGCTTGCACAA+AGG	0.635521	8_2:+63791700	None:intergenic
AAGACAGTTCTTACAGCAGC+TGG	0.466585	8_2:+63793972	None:intergenic
AAGCCTTAGACTTACCCAAA+CGG	0.566589	8_2:+63794108	None:intergenic
AAGCGAAGTAGTGAATGAGT+AGG	0.549484	8_2:+63795912	None:intergenic
AAGTCGTCTTTGTCATCAAC+GGG	0.418041	8_2:+63790700	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTAAGGAAAAGATATGGTTT+AGG	-	chr8_2:63790304-63790323	Msa1261420:three_prime_UTR	30.0%
AAAATGAGAGTGACAAGTTT+GGG	+	chr8_2:63790401-63790420	None:intergenic	30.0%
GTTACGAGTTAGCTAATTTA+GGG	-	chr8_2:63791174-63791193	Msa1261420:intron	30.0%
TGTTAAAGATCCTGTATGAA+GGG	-	chr8_2:63791258-63791277	Msa1261420:intron	30.0%
TTTGTTTAAATTCCGCTATG+TGG	+	chr8_2:63791562-63791581	None:intergenic	30.0%
AAAATTAGCATTAACAGTCG+TGG	+	chr8_2:63791602-63791621	None:intergenic	30.0%
TACCTAAAATTCAGAAATGG+AGG	+	chr8_2:63791714-63791733	None:intergenic	30.0%
AGCAATCTATGGTAAAATTC+CGG	+	chr8_2:63791794-63791813	None:intergenic	30.0%
TTATTCCAGGAAGAAAAGAA+TGG	+	chr8_2:63791878-63791897	None:intergenic	30.0%
AGACAATGTCATATAGTAGT+TGG	+	chr8_2:63791993-63792012	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	63790227	63796155	63790227	ID=Msa1261420;Name=Msa1261420
chr8_2	mRNA	63790227	63796155	63790227	ID=Msa1261420-mRNA-1;Parent=Msa1261420;Name=Msa1261420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=329\|1\|1\|1\|1\|1\|13\|463\|410
chr8_2	exon	63790227	63790767	63790227	ID=Msa1261420-mRNA-1:exon:20647;Parent=Msa1261420-mRNA-1
chr8_2	exon	63790882	63790971	63790882	ID=Msa1261420-mRNA-1:exon:20646;Parent=Msa1261420-mRNA-1
chr8_2	exon	63791427	63791585	63791427	ID=Msa1261420-mRNA-1:exon:20645;Parent=Msa1261420-mRNA-1
chr8_2	exon	63791707	63791804	63791707	ID=Msa1261420-mRNA-1:exon:20644;Parent=Msa1261420-mRNA-1
chr8_2	exon	63791951	63792002	63791951	ID=Msa1261420-mRNA-1:exon:20643;Parent=Msa1261420-mRNA-1
chr8_2	exon	63792275	63792356	63792275	ID=Msa1261420-mRNA-1:exon:20642;Parent=Msa1261420-mRNA-1
chr8_2	exon	63793004	63793131	63793004	ID=Msa1261420-mRNA-1:exon:20641;Parent=Msa1261420-mRNA-1
chr8_2	exon	63793634	63793696	63793634	ID=Msa1261420-mRNA-1:exon:20640;Parent=Msa1261420-mRNA-1
chr8_2	exon	63793781	63793894	63793781	ID=Msa1261420-mRNA-1:exon:20639;Parent=Msa1261420-mRNA-1
chr8_2	exon	63793986	63794027	63793986	ID=Msa1261420-mRNA-1:exon:20638;Parent=Msa1261420-mRNA-1
chr8_2	exon	63794123	63794243	63794123	ID=Msa1261420-mRNA-1:exon:20637;Parent=Msa1261420-mRNA-1
chr8_2	exon	63795513	63795621	63795513	ID=Msa1261420-mRNA-1:exon:20636;Parent=Msa1261420-mRNA-1
chr8_2	exon	63795730	63796155	63795730	ID=Msa1261420-mRNA-1:exon:20635;Parent=Msa1261420-mRNA-1
chr8_2	five_prime_UTR	63795827	63796155	63795827	ID=Msa1261420-mRNA-1:five_prime_utr;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63795730	63795826	63795730	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63795513	63795621	63795513	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63794123	63794243	63794123	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63793986	63794027	63793986	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63793781	63793894	63793781	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63793634	63793696	63793634	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63793004	63793131	63793004	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63792275	63792356	63792275	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63791951	63792002	63791951	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63791707	63791804	63791707	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63791427	63791585	63791427	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63790882	63790971	63790882	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	CDS	63790690	63790767	63790690	ID=Msa1261420-mRNA-1:cds;Parent=Msa1261420-mRNA-1
chr8_2	three_prime_UTR	63790227	63790689	63790227	ID=Msa1261420-mRNA-1:three_prime_utr;Parent=Msa1261420-mRNA-1

Gene Sequence

>Msa1261420

ATGGCTTCCATGCCCAGAGTTATTTTCAGAGACCATGCCATTCTTAAGCCAAATTATACCTATCCACCTCGGAGGAATATCCTTAATAATCATTTCGACGTGAAAGAGAGAAGAAGAAGCTTTGCATTTAGAAGTGAGTTGCAGGGTCCTAATCCAATTGTTGCTACTGGTGCTAAACTACCCTTAGTCCATCTAGCGTCAAAAAGGAATTCTCAAATATTGTGCTCAGCTTCAACAAACATATCTGGAGATGTTCCTGAAAGTGCTGGGGGCCTGAGCCAGTATGAGAAAATTATTGAAACTTTAACCACTCTTTTTCCCGTTTGGGTCATCTTGGGGGCTCTCCTCGGTATTTACAAGCCAGCTGCTGTAACTTGGTTGGAGACAGACCTATTTACTCTTGGCTTGGGTTTCCTCATGCTGTCTATGGGTTTGACATTGACATTTGACGATTTCAGACGATGTCTGCGAAATCCGTGGACTGTGGGTGTGGGGTTTCTTGCACAATATTTGATCAAGCCCGTGCTAGGCTTTTTCATTGCAATGACACTAAAACTTTCGGCTCCTCTTGCAACTGGTCTTATTTTGGTCTCGTGTTGTCCTGGAGGTCAGGCATCAAATGTTGCAACATACATATCCAAGGGAAACGTTGCTCTCTCTGTTCTAATGACAACGTGTTCAACTATTGGAGCTATTATTATGACTCCACTCCTAACGAAGCTTCTAGCTGGTCAACTTGTTCCTGTTGATGCTGCTGGCCTGGCAATTAGCACCTTTCAAGTTGTTTTAGTCCCTACAATTGTGGGAGTTTTGGCGAATGAGTTCTTTCCCAAGTTCACTTCAAAGATAATCACGGTCACACCTTTGATAGGAGTTATTCTGACCACCCTCCTTTGTGCAAGCCCAATCGGGCAAGTCGCGGAAGTGTTAAAAACTCAAGGAGCACAATTGATATTGCCAGTCCTTGCTTTACATGCTGCTGCATTTGCTATTGGTTATTGGATGTCAAGAATATCATTTGGTGAATCCACATCACGCACAATATCTATCGAGTGTGGGATGCAGAGCTCTGCACTTGGATTCTTGCTTGCTCAGAAGCACTTTACCAACCCACTTGTAGCTGTTCCTTCTGCTGTCAGTGTTGTCTGCATGGCGCTTGGTGGGAGTGCTCTAGCTGTGTATTGGAGGAACAGTCCAATTCCCGTTGATGACAAAGACGACTTTAAGGAATGA

Protein sequence

>Msa1261420

MASMPRVIFRDHAILKPNYTYPPRRNILNNHFDVKERRRSFAFRSELQGPNPIVATGAKLPLVHLASKRNSQILCSASTNISGDVPESAGGLSQYEKIIETLTTLFPVWVILGALLGIYKPAAVTWLETDLFTLGLGFLMLSMGLTLTFDDFRRCLRNPWTVGVGFLAQYLIKPVLGFFIAMTLKLSAPLATGLILVSCCPGGQASNVATYISKGNVALSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLAISTFQVVLVPTIVGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIGQVAEVLKTQGAQLILPVLALHAAAFAIGYWMSRISFGESTSRTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSALAVYWRNSPIPVDDKDDFKE*