AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1220680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220680 MtrunA17_Chr4g0071811 97.638 381 5 2 1 380 1 378 0.0 752
Msa1220680 MtrunA17_Chr2g0298711 39.590 293 135 10 36 310 43 311 4.00e-41 147
Msa1220680 MtrunA17_Chr5g0431351 47.009 117 57 3 264 380 99 210 1.46e-21 92.0
Msa1220680 MtrunA17_Chr7g0226451 35.220 159 65 5 257 380 190 345 1.45e-17 83.2
Msa1220680 MtrunA17_Chr1g0209861 44.444 108 48 4 285 380 311 418 2.18e-16 80.5
Msa1220680 MtrunA17_Chr8g0390971 43.137 102 46 1 291 380 293 394 3.32e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1220680 AT5G57180.1 46.501 443 152 19 1 381 1 420 1.50e-77 245
Msa1220680 AT5G57180.2 46.380 442 152 19 1 380 1 419 1.57e-76 243
Msa1220680 AT4G25990.3 41.898 432 146 18 1 381 1 378 1.44e-67 218
Msa1220680 AT4G25990.2 41.898 432 146 18 1 381 1 378 5.72e-67 218
Msa1220680 AT4G25990.1 41.763 431 146 18 1 380 1 377 1.48e-66 216
Msa1220680 AT5G57180.3 41.878 394 146 19 1 331 1 374 1.11e-45 161
Msa1220680 AT5G57180.4 41.878 394 146 19 1 331 1 374 1.11e-45 161
Msa1220680 AT5G14370.1 45.794 107 37 4 290 380 229 330 1.94e-17 83.2
Msa1220680 AT1G07050.2 50.538 93 39 2 289 381 103 188 2.63e-17 80.1
Msa1220680 AT1G25440.1 36.879 141 72 2 254 380 260 397 3.36e-17 83.2
Msa1220680 AT1G07050.1 50.000 92 39 2 289 380 103 187 1.47e-16 77.8
Msa1220680 AT1G73870.1 45.370 108 45 3 287 380 274 381 5.18e-16 79.3
Msa1220680 AT1G68520.1 36.923 130 57 3 269 380 271 393 6.57e-15 76.3
Msa1220680 AT1G49130.1 42.857 91 37 2 293 380 236 314 1.95e-11 65.1
Msa1220680 AT1G49130.2 42.857 91 37 2 293 380 229 307 2.04e-11 65.1

Find 160 sgRNAs with CRISPR-Local

Find 246 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCACCGACACTGCATATTT+TGG 0.094471 8_1:+83889864 None:intergenic
TCCCGAATTTATATGAATTA+AGG 0.133453 8_1:+83890879 None:intergenic
TATGATATGGTTATGATAAT+TGG 0.154427 8_1:-83888589 Msa1220680:three_prime_UTR
TGACATGGTTTCACCGGTTT+TGG 0.239666 8_1:+83890189 None:intergenic
TCCCTTAATTCATATAAATT+CGG 0.248224 8_1:-83890881 Msa1220680:five_prime_UTR
ATTGATCATACCTTCATTCT+TGG 0.253571 8_1:+83888659 None:intergenic
GATTTATTATTGTTATTGTT+GGG 0.253877 8_1:+83890327 None:intergenic
AGCTTCGTTGTAGGTTTGAT+TGG 0.274583 8_1:+83890410 None:intergenic
TCTCATCCATGGATTGGTTT+TGG 0.279149 8_1:-83890000 Msa1220680:CDS
CCCGAATTTATATGAATTAA+GGG 0.284870 8_1:+83890880 None:intergenic
AATTGCATATGAGTGGAAAT+TGG 0.302305 8_1:+83890655 None:intergenic
TGTCACAAATAGATTTGTTA+TGG 0.306145 8_1:-83888805 Msa1220680:CDS
GGAGAGAGAGGGAGAGAGAT+GGG 0.309369 8_1:+83891062 None:intergenic
CAATAATAAATCCACCAAAT+TGG 0.309576 8_1:-83890316 Msa1220680:CDS
ACATACATTAACATCGTTTC+CGG 0.311561 8_1:+83889642 None:intergenic
TTGGCAAGTGAAATTCAAAA+AGG 0.312711 8_1:+83890625 None:intergenic
AGGAAATCTAGTTTATGATA+TGG 0.321517 8_1:-83888602 Msa1220680:three_prime_UTR
TTGGGATTGGAGAAGAGGTT+TGG 0.329352 8_1:+83890363 None:intergenic
AACAAGCCTAACGCTTGTTT+TGG 0.329462 8_1:-83888384 Msa1220680:three_prime_UTR
GAGAGTAAAGAAAAGGAAAT+TGG 0.338392 8_1:+83890935 None:intergenic
GCTAAACCCTAAACCCAAAA+AGG 0.340692 8_1:+83890709 None:intergenic
TGCAGTCTGCACCAATGTTT+AGG 0.343838 8_1:-83888442 Msa1220680:three_prime_UTR
CACGGGAGAAGGAAGTTAAA+AGG 0.344302 8_1:+83891089 None:intergenic
GGATTTATTATTGTTATTGT+TGG 0.348745 8_1:+83890326 None:intergenic
GCCATGTTGATGAAGGAAAT+TGG 0.353307 8_1:-83889924 Msa1220680:CDS
TTTCATACTCTTCAATTCAT+TGG 0.353990 8_1:-83891008 Msa1220680:five_prime_UTR
CCCTTAATTCATATAAATTC+GGG 0.360660 8_1:-83890880 Msa1220680:five_prime_UTR
AATTGAATTACGACGGTGTT+CGG 0.364551 8_1:-83889723 Msa1220680:CDS
ACAAAGAACCTGAAATTGAT+TGG 0.366595 8_1:+83890818 None:intergenic
GGGCTTGCCGTAAAGTAAAA+AGG 0.371473 8_1:+83890227 None:intergenic
GAGAGTGTGTAGATAGATAT+AGG 0.373025 8_1:+83891126 None:intergenic
TTCTTTCTTGCTCCGTCTGT+GGG 0.378657 8_1:+83891304 None:intergenic
GGGAAATTCGACTTCCGGTT+AGG 0.378755 8_1:-83889976 Msa1220680:CDS
AGGAAATTGGTGGAATTTCC+CGG 0.382166 8_1:-83889911 Msa1220680:CDS
AATCATCACCACCATGTTCA+TGG 0.382343 8_1:-83890539 Msa1220680:CDS
AGAAAATCAGATATCAAGTT+AGG 0.387014 8_1:-83888703 Msa1220680:CDS
TGGGATTGGAGAAGAGGTTT+GGG 0.389394 8_1:+83890364 None:intergenic
GTCACAAATAGATTTGTTAT+GGG 0.395534 8_1:-83888804 Msa1220680:CDS
AGGAGAGAGAGGGAGAGAGA+TGG 0.403103 8_1:+83891061 None:intergenic
TATTCTAAACTAAACCCCTT+TGG 0.406174 8_1:-83890785 Msa1220680:five_prime_UTR
GAGTGTTGCAGCTTCGTTGT+AGG 0.410073 8_1:+83890401 None:intergenic
TCTTCTTCTCATCCATGGAT+TGG 0.411520 8_1:-83890006 Msa1220680:CDS
TTAAGGGAAAAGCGAGGGGC+AGG 0.413489 8_1:+83890896 None:intergenic
CCCCTTTGTGGTTGTTGCGT+TGG 0.419219 8_1:-83888527 Msa1220680:three_prime_UTR
AGAGAGAGGGAGAGAGATGG+GGG 0.419235 8_1:+83891064 None:intergenic
TTTGGCTCCGACTGGAAATC+GGG 0.427983 8_1:+83890207 None:intergenic
TGAGATTGGGATTGGAGAAG+AGG 0.428990 8_1:+83890358 None:intergenic
GGTTTGGGTATGCAGTGTTA+AGG 0.430567 8_1:+83890379 None:intergenic
TAGTATATTATTCTAATGTA+AGG 0.433745 8_1:-83888236 Msa1220680:three_prime_UTR
GAATGCAGAATTGAAAGAAA+TGG 0.436941 8_1:-83889779 Msa1220680:CDS
TTGGCGGGAAATTCGACTTC+CGG 0.439230 8_1:-83889981 Msa1220680:CDS
GCTTCGTTGTAGGTTTGATT+GGG 0.439703 8_1:+83890411 None:intergenic
TTTCCGGAAGCATCGGAGAC+AGG 0.440046 8_1:+83889658 None:intergenic
TTGTTATGGGAGAATGGAGG+AGG 0.440896 8_1:-83888791 Msa1220680:CDS
CACCTCTCTGTAATCCTAAC+CGG 0.443822 8_1:+83889962 None:intergenic
TGGAAATTGGGCGAAATTGA+GGG 0.446512 8_1:+83890668 None:intergenic
ATAGATTTGTTATGGGAGAA+TGG 0.448843 8_1:-83888797 Msa1220680:CDS
ACTTTCCTTTCTCCTCTCCT+CGG 0.448991 8_1:-83890964 Msa1220680:five_prime_UTR
ATTGCATATGAGTGGAAATT+GGG 0.450448 8_1:+83890656 None:intergenic
CACCATTGAACTAATCTCTC+CGG 0.459584 8_1:+83890161 None:intergenic
TGGGAGAATGGAGGAGGAAG+TGG 0.459617 8_1:-83888785 Msa1220680:CDS
GATGGAGACAGAGGAGAGAG+AGG 0.465965 8_1:+83891050 None:intergenic
AGCCCTGTCTCCGATGCTTC+CGG 0.466072 8_1:-83889661 Msa1220680:CDS
ACGTCTCTTCTTCTCATCCA+TGG 0.467379 8_1:-83890011 Msa1220680:CDS
TTCTCATCTGTATCTTACTA+AGG 0.468085 8_1:-83891258 Msa1220680:five_prime_UTR
ACGACGGTGTTCGGAAAGCT+TGG 0.468820 8_1:-83889714 Msa1220680:CDS
TTTCTTTCTTGCTCCGTCTG+TGG 0.469930 8_1:+83891303 None:intergenic
ACCAACGCAACAACCACAAA+GGG 0.472287 8_1:+83888526 None:intergenic
ATAATATACTAATCGAGTTA+TGG 0.475442 8_1:+83888248 None:intergenic
ATTTATTATTGTTATTGTTG+GGG 0.476105 8_1:+83890328 None:intergenic
GAGAGAGAGGGAGAGAGATG+GGG 0.477046 8_1:+83891063 None:intergenic
ATGGATAGATCCTCAAAAGT+TGG 0.481071 8_1:+83888493 None:intergenic
AGTGGCAGAGAGTAAAGAAA+AGG 0.481353 8_1:+83890928 None:intergenic
TTTCCAGTCGGAGCCAAAAC+CGG 0.481789 8_1:-83890202 Msa1220680:CDS
CTTTCCTTTCTCCTCTCCTC+GGG 0.482959 8_1:-83890963 Msa1220680:five_prime_UTR
TATAAGAGTTATAAGTGAGA+TGG 0.483571 8_1:+83891032 None:intergenic
ACTAGAAGAAATTAGAAAAG+AGG 0.485084 8_1:-83888622 Msa1220680:three_prime_UTR
GTGGAAATTGGGCGAAATTG+AGG 0.489763 8_1:+83890667 None:intergenic
CAAATGAAGATAAAGCCAAA+GGG 0.494467 8_1:+83890770 None:intergenic
CGGTGGTAAGACGGCGGCGC+CGG 0.496178 8_1:-83889848 Msa1220680:CDS
TATAAGTGAGATGGAGACAG+AGG 0.496455 8_1:+83891041 None:intergenic
GGACTCTGACATGGTTTCAC+CGG 0.498907 8_1:+83890183 None:intergenic
AAGGAAAGTACAGTGAAGAA+AGG 0.501568 8_1:+83890978 None:intergenic
AACATCGTTTCCGGAAGCAT+CGG 0.505047 8_1:+83889651 None:intergenic
ATGCAGTGTCGGTGGTAAGA+CGG 0.515154 8_1:-83889857 Msa1220680:CDS
GAAAGTACAGTGAAGAAAGG+AGG 0.516615 8_1:+83890981 None:intergenic
ATCTGTATCTTACTAAGGTA+AGG 0.519182 8_1:-83891253 Msa1220680:five_prime_UTR
GATTCAGAGATTGTTGAAGA+AGG 0.524561 8_1:+83890489 None:intergenic
TCCCGGAGAGATTAGTTCAA+TGG 0.528675 8_1:-83890163 Msa1220680:CDS
ACCAATTTCCTTCATCAACA+TGG 0.530695 8_1:+83889923 None:intergenic
GAATCGCCAAAGTTGAAAAG+TGG 0.536005 8_1:-83889757 Msa1220680:CDS
AAAGTACAGTGAAGAAAGGA+GGG 0.536683 8_1:+83890982 None:intergenic
AAAGAAGAAGGTTGTTGCGG+TGG 0.538258 8_1:-83889809 Msa1220680:CDS
GCTCTTCGCCATGTTGATGA+AGG 0.541149 8_1:-83889931 Msa1220680:CDS
ATCGGAGACAGGGCTGTCAT+CGG 0.545065 8_1:+83889669 None:intergenic
ACCATTGAACTAATCTCTCC+GGG 0.545916 8_1:+83890162 None:intergenic
ATGAATTAAGGGAAAAGCGA+GGG 0.546681 8_1:+83890891 None:intergenic
AGAAGGAATTGATAGCATCA+TGG 0.548899 8_1:-83890061 Msa1220680:CDS
GAAGGAATTGATAGCATCAT+GGG 0.550516 8_1:-83890060 Msa1220680:CDS
TTCCCGCCAAAACCAATCCA+TGG 0.558777 8_1:+83889994 None:intergenic
GTTGCCCGAGGAGAGGAGAA+AGG 0.559676 8_1:+83890959 None:intergenic
CTCGACGAGGAAATTGAAGA+AGG 0.561335 8_1:-83890078 Msa1220680:CDS
ACGGGAGAAGGAAGTTAAAA+GGG 0.566048 8_1:+83891090 None:intergenic
GACGTGTCCAATACTCTGAA+AGG 0.567728 8_1:+83890255 None:intergenic
ATATAGCCAAAACAAGCGTT+AGG 0.568478 8_1:+83888378 None:intergenic
CGGTTAGGATTACAGAGAGG+TGG 0.569382 8_1:-83889961 Msa1220680:CDS
TTCTTTGTAACGCAGCACGC+TGG 0.571082 8_1:+83888751 None:intergenic
TTCCGGAAGCATCGGAGACA+GGG 0.571094 8_1:+83889659 None:intergenic
AGATCGACGGCCAAGAATGA+AGG 0.572545 8_1:-83888669 Msa1220680:CDS
ATGGAGACAGAGGAGAGAGA+GGG 0.574536 8_1:+83891051 None:intergenic
GTGAAACCATGTCAGAGTCC+CGG 0.575623 8_1:-83890180 Msa1220680:CDS
AATTAAGAATTGCATATGAG+TGG 0.578762 8_1:+83890648 None:intergenic
AATCAGATATCAAGTTAGGA+AGG 0.579412 8_1:-83888699 Msa1220680:CDS
TAAGACGGCGGCGCCGGTGA+CGG 0.581889 8_1:-83889842 Msa1220680:CDS
GGAACAGGAGGAAGAACCAT+CGG 0.583201 8_1:-83890582 Msa1220680:CDS
GAACAGGAGGAAGAACCATC+GGG 0.586253 8_1:-83890581 Msa1220680:CDS
TAAGGGAAAAGCGAGGGGCA+GGG 0.591220 8_1:+83890897 None:intergenic
ATCTCTCCGGGACTCTGACA+TGG 0.592091 8_1:+83890174 None:intergenic
GACCAACGCAACAACCACAA+AGG 0.593303 8_1:+83888525 None:intergenic
AATTGGTGTTGCCCGAGGAG+AGG 0.595304 8_1:+83890952 None:intergenic
AGGAGGAAGAACCATCGGGT+TGG 0.598540 8_1:-83890577 Msa1220680:CDS
ACAGGGCTGTCATCGGCGAA+CGG 0.603353 8_1:+83889676 None:intergenic
AGAAGGAAGTTAAAAGGGAA+AGG 0.605194 8_1:+83891095 None:intergenic
CATAAAGAAAACCTAAACAT+TGG 0.606506 8_1:+83888431 None:intergenic
ACAAATGAAGATAAAGCCAA+AGG 0.607641 8_1:+83890769 None:intergenic
ATACTGGAGGTGAATGGTAG+TGG 0.613821 8_1:-83891328 None:intergenic
CCCAAAATATGCAGTGTCGG+TGG 0.613838 8_1:-83889865 Msa1220680:CDS
AATGGTAGTGGTCCCACAGA+CGG 0.614861 8_1:-83891316 Msa1220680:five_prime_UTR
CTATCTACACACTCTCTCAA+CGG 0.619721 8_1:-83891119 Msa1220680:five_prime_UTR
CATCATGGGAGGTAGAATTG+AGG 0.620329 8_1:-83890046 Msa1220680:CDS
TCGCCCAAAATATGCAGTGT+CGG 0.623873 8_1:-83889868 Msa1220680:CDS
GATTTGTTATGGGAGAATGG+AGG 0.628311 8_1:-83888794 Msa1220680:CDS
AACATACACTTGCAGAGTGG+AGG 0.630945 8_1:+83891225 None:intergenic
GGAAGGTCAATGCAGATCGA+CGG 0.632746 8_1:-83888682 Msa1220680:CDS
AGGGGCAGGGCATTGCAAAG+TGG 0.634161 8_1:+83890910 None:intergenic
CGGCAAGCCCGATTTCCAGT+CGG 0.636352 8_1:-83890214 Msa1220680:CDS
TATGAATTAAGGGAAAAGCG+AGG 0.642327 8_1:+83890890 None:intergenic
GAGAGAGGGAGAGAGATGGG+GGG 0.644914 8_1:+83891065 None:intergenic
CGCGGAATCAATACTCGACG+AGG 0.646026 8_1:-83890091 Msa1220680:CDS
TATATCTAAATCCAACCCGA+TGG 0.646645 8_1:+83890566 None:intergenic
AATTGGGCGAAATTGAGGGT+AGG 0.657668 8_1:+83890672 None:intergenic
CGGAAAGCTTGGTCTGACCG+AGG 0.657705 8_1:-83889703 Msa1220680:CDS
TAGTAAGATACAGATGAGAA+CGG 0.658473 8_1:+83891261 None:intergenic
AAGGAAATTGGTGTTGCCCG+AGG 0.659053 8_1:+83890947 None:intergenic
TTTGTGGTGTAGATTGCAAG+CGG 0.661097 8_1:+83890456 None:intergenic
AAATGAAGATAAAGCCAAAG+GGG 0.671572 8_1:+83890771 None:intergenic
GATGTTCGACTCCATGAACA+TGG 0.682341 8_1:+83890528 None:intergenic
TTGTTGAAATTGAATTACGA+CGG 0.684346 8_1:-83889730 Msa1220680:CDS
CAACGCAACAACCACAAAGG+GGG 0.685338 8_1:+83888528 None:intergenic
AGTAACATACACTTGCAGAG+TGG 0.686837 8_1:+83891222 None:intergenic
CAGTGTCGGTGGTAAGACGG+CGG 0.687348 8_1:-83889854 Msa1220680:CDS
TGAATTAAGGGAAAAGCGAG+GGG 0.690437 8_1:+83890892 None:intergenic
TAAGATACAGATGAGAACGG+AGG 0.697148 8_1:+83891264 None:intergenic
GGAATTGATAGCATCATGGG+AGG 0.697923 8_1:-83890057 Msa1220680:CDS
ATGTTGATGAAGGAAATTGG+TGG 0.707203 8_1:-83889921 Msa1220680:CDS
GTACAGTGAAGAAAGGAGGG+TGG 0.717854 8_1:+83890985 None:intergenic
CCAACGCAACAACCACAAAG+GGG 0.718227 8_1:+83888527 None:intergenic
TTCCGGTTAGGATTACAGAG+AGG 0.750478 8_1:-83889964 Msa1220680:CDS
AAATTGGTGGAATTTCCCGG+CGG 0.816024 8_1:-83889908 Msa1220680:CDS
GTTCGACTCCATGAACATGG+TGG 0.820791 8_1:+83890531 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTATTATTGTTATTGTTG+GGG + chr8_1:83889165-83889184 None:intergenic 15.0%
!!! GATTTATTATTGTTATTGTT+GGG + chr8_1:83889166-83889185 None:intergenic 15.0%
!! AAGTAAAGTAAAAAATGAAT+GGG + chr8_1:83890200-83890219 None:intergenic 15.0%
!! AAAGTAAAGTAAAAAATGAA+TGG + chr8_1:83890201-83890220 None:intergenic 15.0%
!!! TTTTTTTGTGAAATAGAAAA+AGG + chr8_1:83890236-83890255 None:intergenic 15.0%
!! ATTCTCTTACAATATTTAAA+TGG - chr8_1:83890263-83890282 Msa1220680:CDS 15.0%
!! TTCTCTTACAATATTTAAAT+GGG - chr8_1:83890264-83890283 Msa1220680:CDS 15.0%
!! TAGTATATTATTCTAATGTA+AGG - chr8_1:83891254-83891273 Msa1220680:five_prime_UTR 15.0%
!! TCCCTTAATTCATATAAATT+CGG - chr8_1:83888609-83888628 Msa1220680:three_prime_UTR 20.0%
!! TTTAAAAACCAATCAATTTC+AGG - chr8_1:83888664-83888683 Msa1220680:CDS 20.0%
!!! GTTTTGTTTTAAAAAAGAGA+TGG + chr8_1:83888747-83888766 None:intergenic 20.0%
!!! GGATTTATTATTGTTATTGT+TGG + chr8_1:83889167-83889186 None:intergenic 20.0%
!! AAAGAAAAAAAAAAGAGAGA+GGG + chr8_1:83890076-83890095 None:intergenic 20.0%
!! AAAAGAAAAAAAAAAGAGAG+AGG + chr8_1:83890077-83890096 None:intergenic 20.0%
!!! TTTTTTTTTAAAGATTACCC+AGG - chr8_1:83890096-83890115 Msa1220680:CDS 20.0%
!! AGTAAAGTAAAAAATGAATG+GGG + chr8_1:83890199-83890218 None:intergenic 20.0%
!!! AAGTAAAAAGATATTTGTTG+TGG - chr8_1:83890317-83890336 Msa1220680:CDS 20.0%
!!! TTAAGATTTTGTCTTGAATT+AGG - chr8_1:83890451-83890470 Msa1220680:CDS 20.0%
!!! AATTAGGTAAATTTTGTCTT+GGG - chr8_1:83890467-83890486 Msa1220680:CDS 20.0%
!! AGTAGCATATGTTATAATTT+AGG - chr8_1:83890528-83890547 Msa1220680:CDS 20.0%
!! TATTTAATAGATAGTGAATG+AGG - chr8_1:83890606-83890625 Msa1220680:exon 20.0%
!! ATTTAATAGATAGTGAATGA+GGG - chr8_1:83890607-83890626 Msa1220680:exon 20.0%
!!! AAATTGTTGATTGATATTGT+GGG - chr8_1:83890649-83890668 Msa1220680:five_prime_UTR 20.0%
!! TATGATATGGTTATGATAAT+TGG - chr8_1:83890901-83890920 Msa1220680:five_prime_UTR 20.0%
!! AACGAATTGAAAAATTGAAA+TGG + chr8_1:83891019-83891038 None:intergenic 20.0%
!! ATAATATACTAATCGAGTTA+TGG + chr8_1:83891245-83891264 None:intergenic 20.0%
! TATAAGAGTTATAAGTGAGA+TGG + chr8_1:83888461-83888480 None:intergenic 25.0%
! TTTCATACTCTTCAATTCAT+TGG - chr8_1:83888482-83888501 Msa1220680:three_prime_UTR 25.0%
! CCCGAATTTATATGAATTAA+GGG + chr8_1:83888613-83888632 None:intergenic 25.0%
! CCCTTAATTCATATAAATTC+GGG - chr8_1:83888610-83888629 Msa1220680:three_prime_UTR 25.0%
! TCCCGAATTTATATGAATTA+AGG + chr8_1:83888614-83888633 None:intergenic 25.0%
! AATTAAGAATTGCATATGAG+TGG + chr8_1:83888845-83888864 None:intergenic 25.0%
! CAATAATAAATCCACCAAAT+TGG - chr8_1:83889174-83889193 Msa1220680:intron 25.0%
!!! TTCATAAGCTTTTTCCAATT+TGG + chr8_1:83889191-83889210 None:intergenic 25.0%
!! TCATCATCCTTTTTACTTTA+CGG - chr8_1:83889256-83889275 Msa1220680:intron 25.0%
! TTGTTGAAATTGAATTACGA+CGG - chr8_1:83889760-83889779 Msa1220680:CDS 25.0%
!! AGCATTGAAATTGGTAATTA+AGG + chr8_1:83889930-83889949 None:intergenic 25.0%
!! ATTTTTAATCACGTGGAATA+TGG - chr8_1:83890123-83890142 Msa1220680:CDS 25.0%
!! TTTTTAATCACGTGGAATAT+GGG - chr8_1:83890124-83890143 Msa1220680:CDS 25.0%
!! GAATGTGTTACTCAATAAAA+AGG - chr8_1:83890291-83890310 Msa1220680:CDS 25.0%
!! GAATTAGGTAAATTTTGTCT+TGG - chr8_1:83890466-83890485 Msa1220680:CDS 25.0%
!! CAAATTGTTGATTGATATTG+TGG - chr8_1:83890648-83890667 Msa1220680:five_prime_UTR 25.0%
!!! TGTCACAAATAGATTTGTTA+TGG - chr8_1:83890685-83890704 Msa1220680:five_prime_UTR 25.0%
!!! GTCACAAATAGATTTGTTAT+GGG - chr8_1:83890686-83890705 Msa1220680:five_prime_UTR 25.0%
! AGAAAATCAGATATCAAGTT+AGG - chr8_1:83890787-83890806 Msa1220680:five_prime_UTR 25.0%
! ACTAGAAGAAATTAGAAAAG+AGG - chr8_1:83890868-83890887 Msa1220680:five_prime_UTR 25.0%
!! AGGAAATCTAGTTTATGATA+TGG - chr8_1:83890888-83890907 Msa1220680:five_prime_UTR 25.0%
! CATAAAGAAAACCTAAACAT+TGG + chr8_1:83891062-83891081 None:intergenic 25.0%
TAGTAAGATACAGATGAGAA+CGG + chr8_1:83888232-83888251 None:intergenic 30.0%
TTCTCATCTGTATCTTACTA+AGG - chr8_1:83888232-83888251 Msa1220680:three_prime_UTR 30.0%
ATCTGTATCTTACTAAGGTA+AGG - chr8_1:83888237-83888256 Msa1220680:three_prime_UTR 30.0%
GAGAGTAAAGAAAAGGAAAT+TGG + chr8_1:83888558-83888577 None:intergenic 30.0%
ACAAAGAACCTGAAATTGAT+TGG + chr8_1:83888675-83888694 None:intergenic 30.0%
TATTCTAAACTAAACCCCTT+TGG - chr8_1:83888705-83888724 Msa1220680:CDS 30.0%
AAATGAAGATAAAGCCAAAG+GGG + chr8_1:83888722-83888741 None:intergenic 30.0%
CAAATGAAGATAAAGCCAAA+GGG + chr8_1:83888723-83888742 None:intergenic 30.0%
ACAAATGAAGATAAAGCCAA+AGG + chr8_1:83888724-83888743 None:intergenic 30.0%
ATTGCATATGAGTGGAAATT+GGG + chr8_1:83888837-83888856 None:intergenic 30.0%
AATTGCATATGAGTGGAAAT+TGG + chr8_1:83888838-83888857 None:intergenic 30.0%
TTGGCAAGTGAAATTCAAAA+AGG + chr8_1:83888868-83888887 None:intergenic 30.0%
! CTAAAACACGAAGACATTTT+TGG + chr8_1:83888887-83888906 None:intergenic 30.0%
!! AAAATGTCTTCGTGTTTTAG+TGG - chr8_1:83888887-83888906 Msa1220680:intron 30.0%
!! ATAAGCTTTTTCCAATTTGG+TGG + chr8_1:83889188-83889207 None:intergenic 30.0%
! TCTTTTACCTTTCAGAGTAT+TGG - chr8_1:83889228-83889247 Msa1220680:intron 30.0%
GAATGCAGAATTGAAAGAAA+TGG - chr8_1:83889711-83889730 Msa1220680:CDS 30.0%
!! AACAATCCACTTTTCAACTT+TGG + chr8_1:83889742-83889761 None:intergenic 30.0%
ACATACATTAACATCGTTTC+CGG + chr8_1:83889851-83889870 None:intergenic 30.0%
!!! ACAGGTGTTGAATTTTGATT+GGG + chr8_1:83889884-83889903 None:intergenic 30.0%
!!! AACAGGTGTTGAATTTTGAT+TGG + chr8_1:83889885-83889904 None:intergenic 30.0%
ACAAGTACGAAAACAAAAAC+AGG + chr8_1:83889902-83889921 None:intergenic 30.0%
!! GATTAAGGTACTGAAAATGT+CGG + chr8_1:83889960-83889979 None:intergenic 30.0%
AATTGACATATGAGGGATTA+AGG + chr8_1:83889975-83889994 None:intergenic 30.0%
GTTGTTCAATTGACATATGA+GGG + chr8_1:83889982-83890001 None:intergenic 30.0%
TGTTGTTCAATTGACATATG+AGG + chr8_1:83889983-83890002 None:intergenic 30.0%
CTTTGTGTAGTTTCAATAAC+CGG - chr8_1:83890414-83890433 Msa1220680:CDS 30.0%
TTTGTCTTGGGTCAAAATTA+TGG - chr8_1:83890479-83890498 Msa1220680:CDS 30.0%
TTGTCTTGGGTCAAAATTAT+GGG - chr8_1:83890480-83890499 Msa1220680:CDS 30.0%
!! ATAGATTTGTTATGGGAGAA+TGG - chr8_1:83890693-83890712 Msa1220680:five_prime_UTR 30.0%
! ATCTGATTTTCTTAGAGATG+AGG + chr8_1:83890779-83890798 None:intergenic 30.0%
AATCAGATATCAAGTTAGGA+AGG - chr8_1:83890791-83890810 Msa1220680:five_prime_UTR 30.0%
ATTGATCATACCTTCATTCT+TGG + chr8_1:83890834-83890853 None:intergenic 30.0%
!!! GCATCGTTCTTTTTTGTTTA+TGG - chr8_1:83890931-83890950 Msa1220680:five_prime_UTR 30.0%
!!! TCTTTTTTGTTTATGGAGAG+TGG - chr8_1:83890938-83890957 Msa1220680:five_prime_UTR 30.0%
! GAGAGTGTGTAGATAGATAT+AGG + chr8_1:83888367-83888386 None:intergenic 35.0%
AGAAGGAAGTTAAAAGGGAA+AGG + chr8_1:83888398-83888417 None:intergenic 35.0%
AAAGTACAGTGAAGAAAGGA+GGG + chr8_1:83888511-83888530 None:intergenic 35.0%
! AAGGAAAGTACAGTGAAGAA+AGG + chr8_1:83888515-83888534 None:intergenic 35.0%
ATGAATTAAGGGAAAAGCGA+GGG + chr8_1:83888602-83888621 None:intergenic 35.0%
TATGAATTAAGGGAAAAGCG+AGG + chr8_1:83888603-83888622 None:intergenic 35.0%
! TTTTGTTCCCTCTACCTTTT+TGG - chr8_1:83888767-83888786 Msa1220680:CDS 35.0%
! TTTGTTCCCTCTACCTTTTT+GGG - chr8_1:83888768-83888787 Msa1220680:CDS 35.0%
TATATCTAAATCCAACCCGA+TGG + chr8_1:83888927-83888946 None:intergenic 35.0%
GATTCAGAGATTGTTGAAGA+AGG + chr8_1:83889004-83889023 None:intergenic 35.0%
!! TTTGATTGGGTCGTTTTCTT+GGG + chr8_1:83889069-83889088 None:intergenic 35.0%
!!! GTTTGTTTTGAGATTGGGAT+TGG + chr8_1:83889143-83889162 None:intergenic 35.0%
!!! TTGGGGTTTGTTTTGAGATT+GGG + chr8_1:83889148-83889167 None:intergenic 35.0%
!! TGATGATGATGATTTTGACG+CGG - chr8_1:83889381-83889400 Msa1220680:intron 35.0%
! AGAAGGAATTGATAGCATCA+TGG - chr8_1:83889429-83889448 Msa1220680:intron 35.0%
! GAAGGAATTGATAGCATCAT+GGG - chr8_1:83889430-83889449 Msa1220680:intron 35.0%
ACCAATTTCCTTCATCAACA+TGG + chr8_1:83889570-83889589 None:intergenic 35.0%
! ATGTTGATGAAGGAAATTGG+TGG - chr8_1:83889569-83889588 Msa1220680:intron 35.0%
! ATTTTAAGCATATCAACCGC+CGG + chr8_1:83889601-83889620 None:intergenic 35.0%
GGAGAAGAAGAAAAAGAAGA+AGG - chr8_1:83889669-83889688 Msa1220680:CDS 35.0%
GAAAAAGAAGAAGGTTGTTG+CGG - chr8_1:83889678-83889697 Msa1220680:CDS 35.0%
AATTGAATTACGACGGTGTT+CGG - chr8_1:83889767-83889786 Msa1220680:CDS 35.0%
!! GGAAAACAGAGCATTGAAAT+TGG + chr8_1:83889939-83889958 None:intergenic 35.0%
CTTAACATGAACATACAGTC+CGG + chr8_1:83890436-83890455 None:intergenic 35.0%
!! CACTTTTTGTCCAACTTTTG+AGG - chr8_1:83890987-83891006 Msa1220680:five_prime_UTR 35.0%
ATGGATAGATCCTCAAAAGT+TGG + chr8_1:83891000-83891019 None:intergenic 35.0%
ATATAGCCAAAACAAGCGTT+AGG + chr8_1:83891115-83891134 None:intergenic 35.0%
TAAGATACAGATGAGAACGG+AGG + chr8_1:83888229-83888248 None:intergenic 40.0%
AGTAACATACACTTGCAGAG+TGG + chr8_1:83888271-83888290 None:intergenic 40.0%
CTATCTACACACTCTCTCAA+CGG - chr8_1:83888371-83888390 Msa1220680:three_prime_UTR 40.0%
ACGGGAGAAGGAAGTTAAAA+GGG + chr8_1:83888403-83888422 None:intergenic 40.0%
TATAAGTGAGATGGAGACAG+AGG + chr8_1:83888452-83888471 None:intergenic 40.0%
! GAAAGTACAGTGAAGAAAGG+AGG + chr8_1:83888512-83888531 None:intergenic 40.0%
AGTGGCAGAGAGTAAAGAAA+AGG + chr8_1:83888565-83888584 None:intergenic 40.0%
TGAATTAAGGGAAAAGCGAG+GGG + chr8_1:83888601-83888620 None:intergenic 40.0%
CCTAAACCCAAAAAGGTAGA+GGG + chr8_1:83888777-83888796 None:intergenic 40.0%
!!! CCTCTACCTTTTTGGGTTTA+GGG - chr8_1:83888775-83888794 Msa1220680:CDS 40.0%
GCTAAACCCTAAACCCAAAA+AGG + chr8_1:83888784-83888803 None:intergenic 40.0%
TGGAAATTGGGCGAAATTGA+GGG + chr8_1:83888825-83888844 None:intergenic 40.0%
!!! TCTTCGTGTTTTAGTGGAAC+AGG - chr8_1:83888893-83888912 Msa1220680:intron 40.0%
AATCATCACCACCATGTTCA+TGG - chr8_1:83888951-83888970 Msa1220680:intron 40.0%
TTTGTGGTGTAGATTGCAAG+CGG + chr8_1:83889037-83889056 None:intergenic 40.0%
!! TTGATTGGGTCGTTTTCTTG+GGG + chr8_1:83889068-83889087 None:intergenic 40.0%
!! GTTTGATTGGGTCGTTTTCT+TGG + chr8_1:83889070-83889089 None:intergenic 40.0%
GCTTCGTTGTAGGTTTGATT+GGG + chr8_1:83889082-83889101 None:intergenic 40.0%
AGCTTCGTTGTAGGTTTGAT+TGG + chr8_1:83889083-83889102 None:intergenic 40.0%
!!! GTTGGGGTTTGTTTTGAGAT+TGG + chr8_1:83889149-83889168 None:intergenic 40.0%
ACCATTGAACTAATCTCTCC+GGG + chr8_1:83889331-83889350 None:intergenic 40.0%
CACCATTGAACTAATCTCTC+CGG + chr8_1:83889332-83889351 None:intergenic 40.0%
TCTTCTTCTCATCCATGGAT+TGG - chr8_1:83889484-83889503 Msa1220680:intron 40.0%
!!! TCTCATCCATGGATTGGTTT+TGG - chr8_1:83889490-83889509 Msa1220680:intron 40.0%
! GCCATGTTGATGAAGGAAAT+TGG - chr8_1:83889566-83889585 Msa1220680:intron 40.0%
AGGAAATTGGTGGAATTTCC+CGG - chr8_1:83889579-83889598 Msa1220680:intron 40.0%
! TTTTAAGCATATCAACCGCC+GGG + chr8_1:83889600-83889619 None:intergenic 40.0%
! TTTTTCTTCTTCTCCGTCAC+CGG + chr8_1:83889664-83889683 None:intergenic 40.0%
GAATCGCCAAAGTTGAAAAG+TGG - chr8_1:83889733-83889752 Msa1220680:CDS 40.0%
CGTGATTAAAAATCTCGCCT+GGG + chr8_1:83890116-83890135 None:intergenic 40.0%
ACGTGATTAAAAATCTCGCC+TGG + chr8_1:83890117-83890136 None:intergenic 40.0%
! AGGCGAGATTTTTAATCACG+TGG - chr8_1:83890116-83890135 Msa1220680:CDS 40.0%
TGATTGATATTGTGGGAGAC+AGG - chr8_1:83890656-83890675 Msa1220680:five_prime_UTR 40.0%
!! GATTTGTTATGGGAGAATGG+AGG - chr8_1:83890696-83890715 Msa1220680:five_prime_UTR 40.0%
! AACAAGCCTAACGCTTGTTT+TGG - chr8_1:83891106-83891125 Msa1220680:five_prime_UTR 40.0%
TTCTTTCTTGCTCCGTCTGT+GGG + chr8_1:83888189-83888208 None:intergenic 45.0%
TTTCTTTCTTGCTCCGTCTG+TGG + chr8_1:83888190-83888209 None:intergenic 45.0%
AACATACACTTGCAGAGTGG+AGG + chr8_1:83888268-83888287 None:intergenic 45.0%
!! TCTCTCTCTCTCTCTAGAGT+CGG - chr8_1:83888292-83888311 Msa1220680:three_prime_UTR 45.0%
CACGGGAGAAGGAAGTTAAA+AGG + chr8_1:83888404-83888423 None:intergenic 45.0%
ACTTTCCTTTCTCCTCTCCT+CGG - chr8_1:83888526-83888545 Msa1220680:three_prime_UTR 45.0%
!!! CCCTCTACCTTTTTGGGTTT+AGG - chr8_1:83888774-83888793 Msa1220680:CDS 45.0%
CCCTAAACCCAAAAAGGTAG+AGG + chr8_1:83888778-83888797 None:intergenic 45.0%
AATTGGGCGAAATTGAGGGT+AGG + chr8_1:83888821-83888840 None:intergenic 45.0%
GTGGAAATTGGGCGAAATTG+AGG + chr8_1:83888826-83888845 None:intergenic 45.0%
!!! TCGTGTTTTAGTGGAACAGG+AGG - chr8_1:83888896-83888915 Msa1220680:intron 45.0%
GATGTTCGACTCCATGAACA+TGG + chr8_1:83888965-83888984 None:intergenic 45.0%
GGTTTGGGTATGCAGTGTTA+AGG + chr8_1:83889114-83889133 None:intergenic 45.0%
TGGGATTGGAGAAGAGGTTT+GGG + chr8_1:83889129-83889148 None:intergenic 45.0%
TTGGGATTGGAGAAGAGGTT+TGG + chr8_1:83889130-83889149 None:intergenic 45.0%
TGAGATTGGGATTGGAGAAG+AGG + chr8_1:83889135-83889154 None:intergenic 45.0%
GACGTGTCCAATACTCTGAA+AGG + chr8_1:83889238-83889257 None:intergenic 45.0%
GGGCTTGCCGTAAAGTAAAA+AGG + chr8_1:83889266-83889285 None:intergenic 45.0%
!!! TTTTGGCTCCGACTGGAAAT+CGG + chr8_1:83889287-83889306 None:intergenic 45.0%
!!! TGACATGGTTTCACCGGTTT+TGG + chr8_1:83889304-83889323 None:intergenic 45.0%
! TCCCGGAGAGATTAGTTCAA+TGG - chr8_1:83889327-83889346 Msa1220680:intron 45.0%
CTCGACGAGGAAATTGAAGA+AGG - chr8_1:83889412-83889431 Msa1220680:intron 45.0%
! GGAATTGATAGCATCATGGG+AGG - chr8_1:83889433-83889452 Msa1220680:intron 45.0%
CATCATGGGAGGTAGAATTG+AGG - chr8_1:83889444-83889463 Msa1220680:intron 45.0%
ACGTCTCTTCTTCTCATCCA+TGG - chr8_1:83889479-83889498 Msa1220680:intron 45.0%
!!! CATCCATGGATTGGTTTTGG+CGG - chr8_1:83889493-83889512 Msa1220680:intron 45.0%
!!! ATCCATGGATTGGTTTTGGC+GGG - chr8_1:83889494-83889513 Msa1220680:intron 45.0%
TTCCGGTTAGGATTACAGAG+AGG - chr8_1:83889526-83889545 Msa1220680:intron 45.0%
CACCTCTCTGTAATCCTAAC+CGG + chr8_1:83889531-83889550 None:intergenic 45.0%
AAATTGGTGGAATTTCCCGG+CGG - chr8_1:83889582-83889601 Msa1220680:intron 45.0%
TCGCCCAAAATATGCAGTGT+CGG - chr8_1:83889622-83889641 Msa1220680:intron 45.0%
! CCACCGACACTGCATATTTT+GGG + chr8_1:83889628-83889647 None:intergenic 45.0%
! ACCACCGACACTGCATATTT+TGG + chr8_1:83889629-83889648 None:intergenic 45.0%
AAAGAAGAAGGTTGTTGCGG+TGG - chr8_1:83889681-83889700 Msa1220680:CDS 45.0%
! AACATCGTTTCCGGAAGCAT+CGG + chr8_1:83889842-83889861 None:intergenic 45.0%
TTGTTATGGGAGAATGGAGG+AGG - chr8_1:83890699-83890718 Msa1220680:five_prime_UTR 45.0%
ACCAACGCAACAACCACAAA+GGG + chr8_1:83890967-83890986 None:intergenic 45.0%
TGCAGTCTGCACCAATGTTT+AGG - chr8_1:83891048-83891067 Msa1220680:five_prime_UTR 45.0%
ATGGAGACAGAGGAGAGAGA+GGG + chr8_1:83888442-83888461 None:intergenic 50.0%
GTACAGTGAAGAAAGGAGGG+TGG + chr8_1:83888508-83888527 None:intergenic 50.0%
CTTTCCTTTCTCCTCTCCTC+GGG - chr8_1:83888527-83888546 Msa1220680:three_prime_UTR 50.0%
!! AAGGAAATTGGTGTTGCCCG+AGG + chr8_1:83888546-83888565 None:intergenic 50.0%
GGAACAGGAGGAAGAACCAT+CGG - chr8_1:83888908-83888927 Msa1220680:intron 50.0%
GAACAGGAGGAAGAACCATC+GGG - chr8_1:83888909-83888928 Msa1220680:intron 50.0%
GTTCGACTCCATGAACATGG+TGG + chr8_1:83888962-83888981 None:intergenic 50.0%
!!! TCTTGGGGTTCTGGGTTTTG+TGG + chr8_1:83889053-83889072 None:intergenic 50.0%
!! GGTCGTTTTCTTGGGGTTCT+GGG + chr8_1:83889061-83889080 None:intergenic 50.0%
! GAGTGTTGCAGCTTCGTTGT+AGG + chr8_1:83889092-83889111 None:intergenic 50.0%
! TTTGGCTCCGACTGGAAATC+GGG + chr8_1:83889286-83889305 None:intergenic 50.0%
TTTCCAGTCGGAGCCAAAAC+CGG - chr8_1:83889288-83889307 Msa1220680:intron 50.0%
GGACTCTGACATGGTTTCAC+CGG + chr8_1:83889310-83889329 None:intergenic 50.0%
GTGAAACCATGTCAGAGTCC+CGG - chr8_1:83889310-83889329 Msa1220680:intron 50.0%
TTCCCGCCAAAACCAATCCA+TGG + chr8_1:83889499-83889518 None:intergenic 50.0%
TTGGCGGGAAATTCGACTTC+CGG - chr8_1:83889509-83889528 Msa1220680:intron 50.0%
GGGAAATTCGACTTCCGGTT+AGG - chr8_1:83889514-83889533 Msa1220680:intron 50.0%
CGGTTAGGATTACAGAGAGG+TGG - chr8_1:83889529-83889548 Msa1220680:intron 50.0%
! GCTCTTCGCCATGTTGATGA+AGG - chr8_1:83889559-83889578 Msa1220680:intron 50.0%
! CCCAAAATATGCAGTGTCGG+TGG - chr8_1:83889625-83889644 Msa1220680:intron 50.0%
!! ATGCAGTGTCGGTGGTAAGA+CGG - chr8_1:83889633-83889652 Msa1220680:intron 50.0%
GATATTGTGGGAGACAGGCA+CGG - chr8_1:83890661-83890680 Msa1220680:five_prime_UTR 50.0%
TTCTTTGTAACGCAGCACGC+TGG + chr8_1:83890742-83890761 None:intergenic 50.0%
GGAAGGTCAATGCAGATCGA+CGG - chr8_1:83890808-83890827 Msa1220680:five_prime_UTR 50.0%
AGATCGACGGCCAAGAATGA+AGG - chr8_1:83890821-83890840 Msa1220680:five_prime_UTR 50.0%
CAACGCAACAACCACAAAGG+GGG + chr8_1:83890965-83890984 None:intergenic 50.0%
CCAACGCAACAACCACAAAG+GGG + chr8_1:83890966-83890985 None:intergenic 50.0%
GACCAACGCAACAACCACAA+AGG + chr8_1:83890968-83890987 None:intergenic 50.0%
!! CTCTCTCTCTCTAGAGTCGG+TGG - chr8_1:83888295-83888314 Msa1220680:three_prime_UTR 55.0%
AGAGAGAGGGAGAGAGATGG+GGG + chr8_1:83888429-83888448 None:intergenic 55.0%
GAGAGAGAGGGAGAGAGATG+GGG + chr8_1:83888430-83888449 None:intergenic 55.0%
GGAGAGAGAGGGAGAGAGAT+GGG + chr8_1:83888431-83888450 None:intergenic 55.0%
AGGAGAGAGAGGGAGAGAGA+TGG + chr8_1:83888432-83888451 None:intergenic 55.0%
GATGGAGACAGAGGAGAGAG+AGG + chr8_1:83888443-83888462 None:intergenic 55.0%
!! AATTGGTGTTGCCCGAGGAG+AGG + chr8_1:83888541-83888560 None:intergenic 55.0%
TAAGGGAAAAGCGAGGGGCA+GGG + chr8_1:83888596-83888615 None:intergenic 55.0%
TTAAGGGAAAAGCGAGGGGC+AGG + chr8_1:83888597-83888616 None:intergenic 55.0%
AGGAGGAAGAACCATCGGGT+TGG - chr8_1:83888913-83888932 Msa1220680:intron 55.0%
!! GGGTCGTTTTCTTGGGGTTC+TGG + chr8_1:83889062-83889081 None:intergenic 55.0%
ATCTCTCCGGGACTCTGACA+TGG + chr8_1:83889319-83889338 None:intergenic 55.0%
CGCGGAATCAATACTCGACG+AGG - chr8_1:83889399-83889418 Msa1220680:intron 55.0%
ACGACGGTGTTCGGAAAGCT+TGG - chr8_1:83889776-83889795 Msa1220680:CDS 55.0%
ATCGGAGACAGGGCTGTCAT+CGG + chr8_1:83889824-83889843 None:intergenic 55.0%
!! TTCCGGAAGCATCGGAGACA+GGG + chr8_1:83889834-83889853 None:intergenic 55.0%
!! TTTCCGGAAGCATCGGAGAC+AGG + chr8_1:83889835-83889854 None:intergenic 55.0%
TGGGAGAATGGAGGAGGAAG+TGG - chr8_1:83890705-83890724 Msa1220680:five_prime_UTR 55.0%
CCCCTTTGTGGTTGTTGCGT+TGG - chr8_1:83890963-83890982 Msa1220680:five_prime_UTR 55.0%
GAGAGAGGGAGAGAGATGGG+GGG + chr8_1:83888428-83888447 None:intergenic 60.0%
GTTGCCCGAGGAGAGGAGAA+AGG + chr8_1:83888534-83888553 None:intergenic 60.0%
!! AGGGGCAGGGCATTGCAAAG+TGG + chr8_1:83888583-83888602 None:intergenic 60.0%
CGGCAAGCCCGATTTCCAGT+CGG - chr8_1:83889276-83889295 Msa1220680:intron 60.0%
!!! TCACCGGTTTTGGCTCCGAC+TGG + chr8_1:83889294-83889313 None:intergenic 60.0%
!! CAGTGTCGGTGGTAAGACGG+CGG - chr8_1:83889636-83889655 Msa1220680:intron 60.0%
CGGAAAGCTTGGTCTGACCG+AGG - chr8_1:83889787-83889806 Msa1220680:CDS 60.0%
ACAGGGCTGTCATCGGCGAA+CGG + chr8_1:83889817-83889836 None:intergenic 60.0%
AGCCCTGTCTCCGATGCTTC+CGG - chr8_1:83889829-83889848 Msa1220680:CDS 60.0%
TGGAGAGTGGACCCCCTTTG+TGG - chr8_1:83890951-83890970 Msa1220680:five_prime_UTR 60.0%
AGATGGGGGGTCACGGGAGA+AGG + chr8_1:83888415-83888434 None:intergenic 65.0%
GGAGAGAGATGGGGGGTCAC+GGG + chr8_1:83888421-83888440 None:intergenic 65.0%
GGGAGAGAGATGGGGGGTCA+CGG + chr8_1:83888422-83888441 None:intergenic 65.0%
CATCGGCGAACGGCGTTCCT+CGG + chr8_1:83889807-83889826 None:intergenic 65.0%
!! TAAGACGGCGGCGCCGGTGA+CGG - chr8_1:83889648-83889667 Msa1220680:CDS 70.0%
CGGTGGTAAGACGGCGGCGC+CGG - chr8_1:83889642-83889661 Msa1220680:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 83888177 83891335 83888177 ID=Msa1220680;Name=Msa1220680
chr8_1 mRNA 83888177 83891335 83888177 ID=Msa1220680-mRNA-1;Parent=Msa1220680;Name=Msa1220680-mRNA-1;_AED=0.07;_eAED=0.07;_QI=713|1|1|1|1|1|2|487|381
chr8_1 exon 83888177 83888834 83888177 ID=Msa1220680-mRNA-1:exon:30142;Parent=Msa1220680-mRNA-1
chr8_1 exon 83889648 83891335 83889648 ID=Msa1220680-mRNA-1:exon:30141;Parent=Msa1220680-mRNA-1
chr8_1 five_prime_UTR 83890623 83891335 83890623 ID=Msa1220680-mRNA-1:five_prime_utr;Parent=Msa1220680-mRNA-1
chr8_1 CDS 83889648 83890622 83889648 ID=Msa1220680-mRNA-1:cds;Parent=Msa1220680-mRNA-1
chr8_1 CDS 83888664 83888834 83888664 ID=Msa1220680-mRNA-1:cds;Parent=Msa1220680-mRNA-1
chr8_1 three_prime_UTR 83888177 83888663 83888177 ID=Msa1220680-mRNA-1:three_prime_utr;Parent=Msa1220680-mRNA-1
Gene Sequence

>Msa1220680

ATGTCTTCGTGTTTTAGTGGAACAGGAGGAAGAACCATCGGGTTGGATTTAGATATAGTTAAATCATCACCACCATGTTCATGGAGTCGAACATCACAAACATCTTCTTCACCTTCTTCAACAATCTCTGAATCAAGCAATTCACCGCTTGCAATCTACACCACAAAACCCAGAACCCCAAGAAAACGACCCAATCAAACCTACAACGAAGCTGCAACACTCCTTAACACTGCATACCCAAACCTCTTCTCCAATCCCAATCTCAAAACAAACCCCAACAATAACAATAATAAATCCACCAAATTGGAAAAAGCTTATGAATTCGACTCTTCTGAACTTCTTTTACCTTTCAGAGTATTGGACACGTCATCATCCTTTTTACTTTACGGCAAGCCCGATTTCCAGTCGGAGCCAAAACCGGTGAAACCATGTCAGAGTCCCGGAGAGATTAGTTCAATGGTGAATTGTCTTGAATTGAACGACGATGATGATGATGATGATGATTTTGACGCGGAATCAATACTCGACGAGGAAATTGAAGAAGGAATTGATAGCATCATGGGAGGTAGAATTGAGGAGAATGAATCTAACGTCTCTTCTTCTCATCCATGGATTGGTTTTGGCGGGAAATTCGACTTCCGGTTAGGATTACAGAGAGGTGGAGTGAGAGCTCTTCGCCATGTTGATGAAGGAAATTGGTGGAATTTCCCGGCGGTTGATATGCTTAAAATTTCGCCCAAAATATGCAGTGTCGGTGGTAAGACGGCGGCGCCGGTGACGGAGAAGAAGAAAAAGAAGAAGGTTGTTGCGGTGGAGAGACTGAATGCAGAATTGAAAGAAATGGAATCGCCAAAGTTGAAAAGTGGATTGTTGTTGAAATTGAATTACGACGGTGTTCGGAAAGCTTGGTCTGACCGAGGAACGCCGTTCGCCGATGACAGCCCTGTCTCCGATGCTTCCGGAAACGATGTTAATGCACGGTTGTCACAAATAGATTTGTTATGGGAGAATGGAGGAGGAAGTGGTGTAAGAGAAGCCAGCGTGCTGCGTTACAAAGAAAAGCGTCGTACACGCCTCATCTCTAAGAAAATCAGATATCAAGTTAGGAAGGTCAATGCAGATCGACGGCCAAGAATGAAGGTATGA
Protein sequence

>Msa1220680

MSSCFSGTGGRTIGLDLDIVKSSPPCSWSRTSQTSSSPSSTISESSNSPLAIYTTKPRTPRKRPNQTYNEAATLLNTAYPNLFSNPNLKTNPNNNNNKSTKLEKAYEFDSSELLLPFRVLDTSSSFLLYGKPDFQSEPKPVKPCQSPGEISSMVNCLELNDDDDDDDDFDAESILDEEIEEGIDSIMGGRIEENESNVSSSHPWIGFGGKFDFRLGLQRGGVRALRHVDEGNWWNFPAVDMLKISPKICSVGGKTAAPVTEKKKKKKVVAVERLNAELKEMESPKLKSGLLLKLNYDGVRKAWSDRGTPFADDSPVSDASGNDVNARLSQIDLLWENGGGSGVREASVLRYKEKRRTRLISKKIRYQVRKVNADRRPRMKV*