Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427370 | XP_003609202.1 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 808 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427370 | sp|Q1EBV7|BASS2_ARATH | 76.739 | 417 | 82 | 5 | 1 | 410 | 1 | 409 | 0.0 | 603 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427370 | G7JU57 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 808 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0091470 | Msa1427370 | 0.826849 | 2.164931e-54 | -8.615850e-47 |
| Msa1345030 | Msa1427370 | -0.809875 | 1.524295e-50 | -8.615850e-47 |
| Msa1380720 | Msa1427370 | 0.802073 | 6.670989e-49 | -8.615850e-47 |
| Msa1388610 | Msa1427370 | 0.814307 | 1.647103e-51 | -8.615850e-47 |
| Msa1427370 | Msa1462600 | 0.815840 | 7.520215e-52 | -8.615850e-47 |
| Msa0140290 | Msa1427370 | 0.813467 | 2.522441e-51 | -8.615850e-47 |
| Msa0166570 | Msa1427370 | 0.800031 | 1.743993e-48 | -8.615850e-47 |
| Msa1237750 | Msa1427370 | 0.812785 | 3.559948e-51 | -8.615850e-47 |
| Msa1261390 | Msa1427370 | 0.959553 | 1.439215e-117 | -8.615850e-47 |
| Msa1261420 | Msa1427370 | 0.969572 | 2.553079e-130 | -8.615850e-47 |
| Msa1281270 | Msa1427370 | 0.802063 | 6.700323e-49 | -8.615850e-47 |
| Msa1318180 | Msa1427370 | 0.854079 | 1.562253e-61 | -8.615850e-47 |
| Msa0373220 | Msa1427370 | 0.821077 | 4.889845e-53 | -8.615850e-47 |
| Msa0380650 | Msa1427370 | 0.814592 | 1.424690e-51 | -8.615850e-47 |
| Msa0409300 | Msa1427370 | -0.813589 | 2.371118e-51 | -8.615850e-47 |
| Msa0430290 | Msa1427370 | 0.814842 | 1.253726e-51 | -8.615850e-47 |
| Msa0468020 | Msa1427370 | 0.817751 | 2.803148e-52 | -8.615850e-47 |
| Msa1035510 | Msa1427370 | 0.851864 | 6.722994e-61 | -8.615850e-47 |
| Msa1075420 | Msa1427370 | 0.835382 | 1.733103e-56 | -8.615850e-47 |
| Msa0267340 | Msa1427370 | 0.811448 | 6.966007e-51 | -8.615850e-47 |
| Msa1116550 | Msa1427370 | 0.822242 | 2.630653e-53 | -8.615850e-47 |
| Msa1163050 | Msa1427370 | 0.812463 | 4.186264e-51 | -8.615850e-47 |
| Msa1173000 | Msa1427370 | 0.999503 | 3.157018e-317 | -8.615850e-47 |
| Msa1177240 | Msa1427370 | 0.800848 | 1.188588e-48 | -8.615850e-47 |
| Msa1177960 | Msa1427370 | 0.831592 | 1.529282e-55 | -8.615850e-47 |
| Msa1220680 | Msa1427370 | 0.811928 | 5.477238e-51 | -8.615850e-47 |
| Msa0882430 | Msa1427370 | -0.801501 | 8.741197e-49 | -8.615850e-47 |
| Msa0909720 | Msa1427370 | 0.839095 | 1.945348e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427370 | MtrunA17_Chr4g0062901 | 97.317 | 410 | 11 | 0 | 1 | 410 | 1 | 410 | 0.0 | 808 |
| Msa1427370 | MtrunA17_Chr2g0314491 | 44.384 | 365 | 189 | 7 | 46 | 406 | 44 | 398 | 4.30e-91 | 280 |
| Msa1427370 | MtrunA17_Chr2g0314561 | 41.053 | 380 | 218 | 5 | 29 | 406 | 12 | 387 | 2.12e-85 | 265 |
| Msa1427370 | MtrunA17_Chr7g0234581 | 41.333 | 300 | 171 | 3 | 100 | 395 | 94 | 392 | 1.45e-64 | 212 |
| Msa1427370 | MtrunA17_Chr5g0398471 | 34.551 | 356 | 214 | 6 | 62 | 398 | 68 | 423 | 1.86e-55 | 189 |
| Msa1427370 | MtrunA17_Chr5g0398481 | 31.412 | 347 | 220 | 7 | 65 | 393 | 68 | 414 | 1.79e-48 | 170 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1427370 | AT2G26900.1 | 76.739 | 417 | 82 | 5 | 1 | 410 | 1 | 409 | 0.0 | 603 |
| Msa1427370 | AT1G78560.1 | 47.305 | 334 | 169 | 5 | 75 | 404 | 71 | 401 | 2.22e-90 | 279 |
| Msa1427370 | AT3G25410.1 | 37.968 | 374 | 209 | 8 | 30 | 397 | 53 | 409 | 5.60e-65 | 214 |
| Msa1427370 | AT4G12030.2 | 36.478 | 318 | 188 | 6 | 94 | 397 | 87 | 404 | 6.15e-58 | 195 |
| Msa1427370 | AT4G22840.1 | 36.184 | 304 | 183 | 4 | 103 | 395 | 98 | 401 | 1.84e-57 | 194 |
| Msa1427370 | AT4G12030.4 | 36.741 | 313 | 184 | 6 | 99 | 397 | 1 | 313 | 4.11e-57 | 190 |
| Msa1427370 | AT4G12030.1 | 37.407 | 270 | 158 | 5 | 139 | 397 | 1 | 270 | 1.94e-49 | 169 |
| Msa1427370 | AT4G12030.5 | 37.407 | 270 | 158 | 5 | 139 | 397 | 1 | 270 | 1.94e-49 | 169 |
| Msa1427370 | AT4G12030.3 | 37.407 | 270 | 158 | 5 | 139 | 397 | 1 | 270 | 1.94e-49 | 169 |
Find 139 sgRNAs with CRISPR-Local
Find 389 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCATTTGCTATTGGTTAT+TGG | 0.150047 | tig0026186:+43730 | Msa1427370:CDS |
| TGCGGTTCTATTATAATTAT+TGG | 0.184198 | tig0026186:+44837 | Msa1427370:three_prime_UTR |
| TGATGACAAAGACGACTTTA+AGG | 0.192231 | tig0026186:+44528 | Msa1427370:CDS |
| GGGTTTCCTCATGCTGTCTA+TGG | 0.198961 | tig0026186:+41393 | Msa1427370:CDS |
| TCTTGCAACTGGTCTTATTT+TGG | 0.200101 | tig0026186:+42131 | Msa1427370:CDS |
| CGAGGTGGATAGGTATAATT+TGG | 0.253688 | tig0026186:-39465 | None:intergenic |
| ATGCCCATGTAGCAACAAAA+AGG | 0.289470 | tig0026186:+44755 | Msa1427370:three_prime_UTR |
| CATGCTGCTGCATTTGCTAT+TGG | 0.299073 | tig0026186:+43723 | Msa1427370:CDS |
| ACATACCGAAATGATTATTA+AGG | 0.327038 | tig0026186:-39497 | None:intergenic |
| TTCTACAGGTGTTCAACTAT+TGG | 0.338192 | tig0026186:+42878 | Msa1427370:intron |
| TTGTATGCGCAGGTCATCTT+GGG | 0.340243 | tig0026186:+41210 | Msa1427370:intron |
| CAATGGATTCGACCGTTCAT+TGG | 0.341941 | tig0026186:-44816 | None:intergenic |
| TGCATTTAGAAGTGAGTTGC+AGG | 0.346099 | tig0026186:+39646 | Msa1427370:CDS |
| TCTTTGTCATCAACGGGAAT+TGG | 0.350500 | tig0026186:-44517 | None:intergenic |
| ATGAGCGGAAAATAATTCAT+AGG | 0.353292 | tig0026186:-44588 | None:intergenic |
| AATAATATAATATAATTTCA+TGG | 0.358236 | tig0026186:-44989 | None:intergenic |
| AATATCCTTAATAATCATTT+CGG | 0.364566 | tig0026186:+39492 | Msa1427370:CDS |
| TAGTCCATCTAGCGTCAAAA+AGG | 0.368389 | tig0026186:+39708 | Msa1427370:CDS |
| GAAAATGAGAGTGACAAGTT+TGG | 0.368676 | tig0026186:-39260 | None:intergenic |
| GACCTATTTACTCTTGGCTT+GGG | 0.369788 | tig0026186:+41373 | Msa1427370:CDS |
| TTCTCAGACACTAAAACTTT+CGG | 0.372149 | tig0026186:+42104 | Msa1427370:intron |
| CTTGTATGCGCAGGTCATCT+TGG | 0.374061 | tig0026186:+41209 | Msa1427370:intron |
| ATCTTACCTCCCACAATTGT+AGG | 0.403675 | tig0026186:-43276 | None:intergenic |
| TAGATTGCTGGAAGAGAAAA+GGG | 0.407392 | tig0026186:-39391 | None:intergenic |
| GTAAGGAAAAGATATGGTTT+AGG | 0.411757 | tig0026186:+39165 | Msa1427370:five_prime_UTR |
| GATTATCTTTGAAGTGAACT+TGG | 0.415890 | tig0026186:-43459 | None:intergenic |
| AAGTCGTCTTTGTCATCAAC+GGG | 0.418041 | tig0026186:-44523 | None:intergenic |
| GAAAGTGTAAGGAAAAGATA+TGG | 0.418312 | tig0026186:+39159 | Msa1427370:five_prime_UTR |
| AACCCAAGCCAAGAGTAAAT+AGG | 0.419662 | tig0026186:-41375 | None:intergenic |
| TTAGCACCAGTAGCAACAAT+TGG | 0.423758 | tig0026186:-39677 | None:intergenic |
| GGTTTCCTCATGCTGTCTAT+GGG | 0.424749 | tig0026186:+41394 | Msa1427370:CDS |
| CTCGTGTTGTCCTGGAGGTC+AGG | 0.424832 | tig0026186:+42155 | Msa1427370:CDS |
| TGAAGAATTATTATTGAAGA+TGG | 0.425049 | tig0026186:-39230 | None:intergenic |
| CTCTTCCAGCAATCTATCCA+TGG | 0.431136 | tig0026186:+39398 | Msa1427370:exon |
| TGGATGTCAAGAATATCATT+TGG | 0.431918 | tig0026186:+43750 | Msa1427370:CDS |
| TGCATATAGTTTGCGAGTCC+AGG | 0.432787 | tig0026186:+39129 | Msa1427370:five_prime_UTR |
| GGAGTGCTCTAGCTGTGTAT+TGG | 0.435900 | tig0026186:+44485 | Msa1427370:CDS |
| GAACTTACAGCAGCATCAAC+AGG | 0.438663 | tig0026186:-42953 | None:intergenic |
| CTTTCGGCTCCTCTTGCAAC+TGG | 0.440648 | tig0026186:+42120 | Msa1427370:CDS |
| GGAAGCCATGGATAGATTGC+TGG | 0.446758 | tig0026186:-39403 | None:intergenic |
| TCAGCTTCAACAAACATATC+TGG | 0.448870 | tig0026186:+41025 | Msa1427370:CDS |
| CTTACACTTTCAAGCCAGCC+TGG | 0.449641 | tig0026186:-39147 | None:intergenic |
| ATCTATCGAGTGTGGGATGC+AGG | 0.454978 | tig0026186:+43794 | Msa1427370:CDS |
| CCAGTAGCAACAATTGGATT+AGG | 0.455683 | tig0026186:-39671 | None:intergenic |
| TTTATTTCAGGTAACTTGGT+TGG | 0.456017 | tig0026186:+41345 | Msa1427370:intron |
| GAAGACATTAATTTATGCAT+TGG | 0.457196 | tig0026186:+44617 | Msa1427370:three_prime_UTR |
| AAAATGAGAGTGACAAGTTT+GGG | 0.457897 | tig0026186:-39259 | None:intergenic |
| AAGACAGTTCTTACAGCAGC+TGG | 0.466585 | tig0026186:-41255 | None:intergenic |
| CCTAATCCAATTGTTGCTAC+TGG | 0.467233 | tig0026186:+39671 | Msa1427370:CDS |
| AACTCTGGGCATGGAAGCCA+TGG | 0.467872 | tig0026186:-39415 | None:intergenic |
| ACATTTGATGCCTGACCTCC+AGG | 0.471096 | tig0026186:-42165 | None:intergenic |
| GGTATAATTTGGCTTAAGAA+TGG | 0.471739 | tig0026186:-39454 | None:intergenic |
| GAGACAGACCTATTTACTCT+TGG | 0.473070 | tig0026186:+41367 | Msa1427370:CDS |
| GAGATGTTCCTGAAAGTGCT+GGG | 0.473507 | tig0026186:+41047 | Msa1427370:CDS |
| TGCTGTCAGTGTTGTCTGCA+TGG | 0.473678 | tig0026186:+44338 | Msa1427370:CDS |
| TGACTTTATTTCAGGTAACT+TGG | 0.475397 | tig0026186:+41341 | Msa1427370:intron |
| GGAGATGTTCCTGAAAGTGC+TGG | 0.475562 | tig0026186:+41046 | Msa1427370:CDS |
| AGCCTTAGACTTACCCAAAC+GGG | 0.475608 | tig0026186:-41118 | None:intergenic |
| AGACCTATTTACTCTTGGCT+TGG | 0.477469 | tig0026186:+41372 | Msa1427370:CDS |
| ATCACGGTCACACCTTTGAT+AGG | 0.479069 | tig0026186:+43479 | Msa1427370:CDS |
| GATATTTGCAGAGTCGTTTG+TGG | 0.480740 | tig0026186:+39187 | Msa1427370:five_prime_UTR |
| ATAGATTGCTGGAAGAGAAA+AGG | 0.482657 | tig0026186:-39392 | None:intergenic |
| CTGAATATCACTAGTTGAAG+TGG | 0.484303 | tig0026186:-44883 | None:intergenic |
| CAGGCTGGCTTGAAAGTGTA+AGG | 0.486345 | tig0026186:+39148 | Msa1427370:five_prime_UTR |
| ATGGTCTCTGAAAATAACTC+TGG | 0.487045 | tig0026186:-39430 | None:intergenic |
| AGAGAGAGCAACGTTTCCCT+TGG | 0.489152 | tig0026186:-42202 | None:intergenic |
| TGTTTGCAGAGCTCTGCACT+TGG | 0.497307 | tig0026186:+44264 | Msa1427370:intron |
| TTTATGAATATTCAAGAATG+TGG | 0.499668 | tig0026186:-39350 | None:intergenic |
| GTGCTCTAGCTGTGTATTGG+AGG | 0.507859 | tig0026186:+44488 | Msa1427370:CDS |
| ATTATCTTTGAAGTGAACTT+GGG | 0.524375 | tig0026186:-43458 | None:intergenic |
| CTCCTAACGAAGCTTCTAGC+TGG | 0.529020 | tig0026186:+42920 | Msa1427370:CDS |
| GAATGTGGAATGAATGAAAG+TGG | 0.531890 | tig0026186:-39335 | None:intergenic |
| GACCAGCTAGAAGCTTCGTT+AGG | 0.533754 | tig0026186:-42922 | None:intergenic |
| TCTTACCTCCCACAATTGTA+GGG | 0.534398 | tig0026186:-43275 | None:intergenic |
| TATTTGATCAAGCCCGTGCT+AGG | 0.535455 | tig0026186:+41577 | Msa1427370:CDS |
| CTGCCGTAATGCAGCTTGGT+GGG | 0.539439 | tig0026186:+44464 | Msa1427370:intron |
| CTTGAAAGGTGCTAATTGCC+AGG | 0.540089 | tig0026186:-43242 | None:intergenic |
| TGAGCGGAAAATAATTCATA+GGG | 0.542770 | tig0026186:-44587 | None:intergenic |
| GATATTCCTCCGAGGTGGAT+AGG | 0.546749 | tig0026186:-39475 | None:intergenic |
| TATAGTTTGCGAGTCCAGGC+TGG | 0.546816 | tig0026186:+39133 | Msa1427370:five_prime_UTR |
| TAAAATACTCTAACATTGCA+AGG | 0.547665 | tig0026186:-44675 | None:intergenic |
| AAGCGAAGTAGTGAATGAGT+AGG | 0.549484 | tig0026186:-39309 | None:intergenic |
| TGTTTGTCCCTTACAGTCCA+CGG | 0.554456 | tig0026186:-41460 | None:intergenic |
| TGTTGCAACATACATATCCA+AGG | 0.564619 | tig0026186:+42185 | Msa1427370:CDS |
| TTTGTTGCCACTCTTCACAC+TGG | 0.565770 | tig0026186:-44728 | None:intergenic |
| AAGCCTTAGACTTACCCAAA+CGG | 0.566589 | tig0026186:-41119 | None:intergenic |
| AAAGTCGTCTTTGTCATCAA+CGG | 0.567068 | tig0026186:-44524 | None:intergenic |
| ATTATTGAAGATGGTTGTCG+TGG | 0.567212 | tig0026186:-39221 | None:intergenic |
| GACGATGTCTGCGAAATCCG+TGG | 0.569012 | tig0026186:+41443 | Msa1427370:CDS |
| ACTGCCGTAATGCAGCTTGG+TGG | 0.570730 | tig0026186:+44463 | Msa1427370:intron |
| CGCACAATATCTATCGAGTG+TGG | 0.573334 | tig0026186:+43786 | Msa1427370:CDS |
| AGGGACTAAAACAACTTGAA+AGG | 0.575131 | tig0026186:-43256 | None:intergenic |
| ATTGGTCTTGTCTTGCATTG+TGG | 0.575302 | tig0026186:+44855 | Msa1427370:three_prime_UTR |
| GCAGCATGTAAAGCAAGGAC+TGG | 0.578322 | tig0026186:-43708 | None:intergenic |
| GTCAGAATAACTCCTATCAA+AGG | 0.579554 | tig0026186:-43491 | None:intergenic |
| TAATTATAATAGAACCGCAA+TGG | 0.584560 | tig0026186:-44833 | None:intergenic |
| GCTAGAAGCTTCGTTAGGAG+TGG | 0.586839 | tig0026186:-42917 | None:intergenic |
| CAGACAACACTGACAGCAGA+AGG | 0.589026 | tig0026186:-44333 | None:intergenic |
| TCTGAAAATAACTCTGGGCA+TGG | 0.589097 | tig0026186:-39424 | None:intergenic |
| TAGCTACTGAGCTCTTGCCA+TGG | 0.591937 | tig0026186:+44787 | Msa1427370:three_prime_UTR |
| GCATTTAGAAGTGAGTTGCA+GGG | 0.593011 | tig0026186:+39647 | Msa1427370:CDS |
| TGGTCTCTGAAAATAACTCT+GGG | 0.595321 | tig0026186:-39429 | None:intergenic |
| TGTATGCGCAGGTCATCTTG+GGG | 0.596551 | tig0026186:+41211 | Msa1427370:intron |
| AGATGTTCCTGAAAGTGCTG+GGG | 0.599940 | tig0026186:+41048 | Msa1427370:CDS |
| TTGGTCTCGTGTTGTCCTGG+AGG | 0.601309 | tig0026186:+42150 | Msa1427370:CDS |
| TACTGGGCTTGCACAAAGGA+GGG | 0.601541 | tig0026186:-43516 | None:intergenic |
| TTACTGGGCTTGCACAAAGG+AGG | 0.605677 | tig0026186:-43517 | None:intergenic |
| GATAGATATTGTGCGTGATG+TGG | 0.609427 | tig0026186:-43778 | None:intergenic |
| AAAATAAGACCAGTTGCAAG+AGG | 0.609602 | tig0026186:-42129 | None:intergenic |
| ATGCAGCAGCATGTAAAGCA+AGG | 0.610129 | tig0026186:-43713 | None:intergenic |
| AGGAACAGCTACAAGTGGGT+TGG | 0.613007 | tig0026186:-44313 | None:intergenic |
| GTATGCGCAGGTCATCTTGG+GGG | 0.613520 | tig0026186:+41212 | Msa1427370:intron |
| GATGTTCCTGAAAGTGCTGG+GGG | 0.615383 | tig0026186:+41049 | Msa1427370:CDS |
| TACTGAGCTCTTGCCATGGT+AGG | 0.620885 | tig0026186:+44791 | Msa1427370:three_prime_UTR |
| GCAGAAGGAACAGCTACAAG+TGG | 0.624409 | tig0026186:-44318 | None:intergenic |
| TCAAACCCATAGACAGCATG+AGG | 0.627326 | tig0026186:-41399 | None:intergenic |
| AATGTCTTCTAAACAATGAG+CGG | 0.628280 | tig0026186:-44603 | None:intergenic |
| GCACAATATCTATCGAGTGT+GGG | 0.631842 | tig0026186:+43787 | Msa1427370:CDS |
| GGCAAGAGCTCAGTAGCTAG+AGG | 0.632707 | tig0026186:-44783 | None:intergenic |
| GTTCACTTCAAAGATAATCA+CGG | 0.634653 | tig0026186:+43463 | Msa1427370:CDS |
| AACTTACTGGGCTTGCACAA+AGG | 0.635521 | tig0026186:-43520 | None:intergenic |
| TTAGTCCCTACAATTGTGGG+AGG | 0.636420 | tig0026186:+43270 | Msa1427370:CDS |
| CCGTTCATTGGATCCTACCA+TGG | 0.636795 | tig0026186:-44804 | None:intergenic |
| ATTTAAACCAGTGTGAAGAG+TGG | 0.642196 | tig0026186:+44721 | Msa1427370:three_prime_UTR |
| GTTGCAACATACATATCCAA+GGG | 0.644060 | tig0026186:+42186 | Msa1427370:CDS |
| ATAATTCATAGGGCTTGCAG+TGG | 0.645991 | tig0026186:-44577 | None:intergenic |
| TTTGACGCTAGATGGACTAA+GGG | 0.646699 | tig0026186:-39704 | None:intergenic |
| AGATTGCTGGAAGAGAAAAG+GGG | 0.649196 | tig0026186:-39390 | None:intergenic |
| TTAAGGATATTCCTCCGAGG+TGG | 0.654156 | tig0026186:-39480 | None:intergenic |
| CCATGGTAGGATCCAATGAA+CGG | 0.657800 | tig0026186:+44804 | Msa1427370:three_prime_UTR |
| CAGAAGGAACAGCTACAAGT+GGG | 0.665602 | tig0026186:-44317 | None:intergenic |
| AATTTGGCTTAAGAATGGCA+TGG | 0.677374 | tig0026186:-39449 | None:intergenic |
| TGGGCTTGCACAAAGGAGGG+TGG | 0.682947 | tig0026186:-43513 | None:intergenic |
| CAAATTATACCTATCCACCT+CGG | 0.703278 | tig0026186:+39466 | Msa1427370:CDS |
| CAGCTGGCTTGTAAATACCG+AGG | 0.715500 | tig0026186:-41239 | None:intergenic |
| ATTATACCTATCCACCTCGG+AGG | 0.727862 | tig0026186:+39469 | Msa1427370:CDS |
| ATGAACGGTCGAATCCATTG+CGG | 0.730576 | tig0026186:+44819 | Msa1427370:three_prime_UTR |
| TGTCAGTGTTGTCTGCATGG+CGG | 0.751349 | tig0026186:+44341 | Msa1427370:CDS |
| TTATTAAGGATATTCCTCCG+AGG | 0.766658 | tig0026186:-39483 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTTTGATATTTTTAC+TGG | + | tig0026186:40917-40936 | Msa1427370:intron | 10.0% |
| !! | AAATAAAATACAAAATACAT+AGG | - | tig0026186:42274-42293 | None:intergenic | 10.0% |
| !! | ATATATATAAAAGATACAAT+GGG | - | tig0026186:43168-43187 | None:intergenic | 10.0% |
| !! | TATATATATAAAAGATACAA+TGG | - | tig0026186:43169-43188 | None:intergenic | 10.0% |
| !! | AAATATTAGAAAAATGATTG+AGG | + | tig0026186:39097-39116 | Msa1427370:five_prime_UTR | 15.0% |
| !! | AATATCCTTAATAATCATTT+CGG | + | tig0026186:39492-39511 | Msa1427370:CDS | 15.0% |
| !!! | TTTTACTTGTTTTGTATTAT+TGG | + | tig0026186:39585-39604 | Msa1427370:intron | 15.0% |
| !!! | TAGGAATTTTAATTTAAAGT+AGG | + | tig0026186:40243-40262 | Msa1427370:intron | 15.0% |
| !!! | TTTGTATTTTATTTTTTCTC+TGG | + | tig0026186:42280-42299 | Msa1427370:intron | 15.0% |
| !! | TAAATTAGAAACCAATTATA+TGG | + | tig0026186:42451-42470 | Msa1427370:intron | 15.0% |
| !!! | TTACTATTTTACCATATAAT+TGG | - | tig0026186:42465-42484 | None:intergenic | 15.0% |
| !!! | ATTAACTTTTTCAAATGATT+AGG | - | tig0026186:43114-43133 | None:intergenic | 15.0% |
| !!! | AATGTTTTTGCTTTATTATT+TGG | + | tig0026186:43412-43431 | Msa1427370:intron | 15.0% |
| !! | AAATTATTAATCTATTGATC+TGG | - | tig0026186:44104-44123 | None:intergenic | 15.0% |
| !! | TGAAGAATTATTATTGAAGA+TGG | - | tig0026186:39233-39252 | None:intergenic | 20.0% |
| !! | TTTATGAATATTCAAGAATG+TGG | - | tig0026186:39353-39372 | None:intergenic | 20.0% |
| !! | TTGACAAAAAATGAAATAAC+TGG | + | tig0026186:39792-39811 | Msa1427370:intron | 20.0% |
| !!! | GTAATTGAAGTTTTGATATA+TGG | + | tig0026186:39983-40002 | Msa1427370:intron | 20.0% |
| !!! | TTTTGTTTGTAATTGTTGAA+TGG | + | tig0026186:40070-40089 | Msa1427370:intron | 20.0% |
| !!! | TTTAATTTAAAGTAGGAACA+AGG | + | tig0026186:40250-40269 | Msa1427370:intron | 20.0% |
| !!! | TTAATTTAAAGTAGGAACAA+GGG | + | tig0026186:40251-40270 | Msa1427370:intron | 20.0% |
| !! | TTAGAAGTTACATTACTTAA+TGG | - | tig0026186:40533-40552 | None:intergenic | 20.0% |
| !! | ATTCTGATTTATTTCATTGA+TGG | + | tig0026186:40679-40698 | Msa1427370:intron | 20.0% |
| !! | TTCTGATTTATTTCATTGAT+GGG | + | tig0026186:40680-40699 | Msa1427370:intron | 20.0% |
| !! | AATGAAAATCAGAAAAACAA+AGG | + | tig0026186:40816-40835 | Msa1427370:intron | 20.0% |
| !!! | TTTCAATAATTTTCTCATAC+TGG | - | tig0026186:41081-41100 | None:intergenic | 20.0% |
| !!! | TATTGTTATGACTTTATTTC+AGG | + | tig0026186:41333-41352 | Msa1427370:intron | 20.0% |
| !! | AATAAATCATAATTAGTGGT+AGG | - | tig0026186:41521-41540 | None:intergenic | 20.0% |
| !! | ACACAATAAATCATAATTAG+TGG | - | tig0026186:41525-41544 | None:intergenic | 20.0% |
| !! | TGGTAATTCAAAATATAACA+GGG | - | tig0026186:41693-41712 | None:intergenic | 20.0% |
| !! | GGTAAAATAGTAAAACTTAT+AGG | + | tig0026186:42472-42491 | Msa1427370:intron | 20.0% |
| !! | AATAGTAAAACTTATAGGAT+TGG | + | tig0026186:42477-42496 | Msa1427370:intron | 20.0% |
| !! | ATATACATTACCACAAATTT+AGG | - | tig0026186:42589-42608 | None:intergenic | 20.0% |
| !! | CATTTGAAAAAGTTAATATC+TGG | + | tig0026186:43117-43136 | Msa1427370:intron | 20.0% |
| !!! | TATTAGGATGTATGTTTTTT+AGG | + | tig0026186:43861-43880 | Msa1427370:intron | 20.0% |
| !! | ATATTAATTGTAAGTGCTTT+AGG | + | tig0026186:44211-44230 | Msa1427370:intron | 20.0% |
| !!! | GTTAGAGTATTTTAGAATTT+AGG | + | tig0026186:44684-44703 | Msa1427370:three_prime_UTR | 20.0% |
| ! | ACATACCGAAATGATTATTA+AGG | - | tig0026186:39500-39519 | None:intergenic | 25.0% |
| ! | GTACAAACAATTCATATTGA+AGG | - | tig0026186:39873-39892 | None:intergenic | 25.0% |
| ! | ACCAAGAACTTTAATCTAAA+AGG | - | tig0026186:40211-40230 | None:intergenic | 25.0% |
| !!! | TCTTGGTTCTATTTTAAAGT+AGG | + | tig0026186:40224-40243 | Msa1427370:intron | 25.0% |
| ! | GTATACCTAAAATTCAGAAA+TGG | - | tig0026186:40579-40598 | None:intergenic | 25.0% |
| ! | ATTGATATAATCTATCTTGC+CGG | + | tig0026186:40634-40653 | Msa1427370:intron | 25.0% |
| !! | ATATAACTATGTGCTTTTCA+AGG | + | tig0026186:40703-40722 | Msa1427370:intron | 25.0% |
| ! | ATCAGAAAAACAAAGGAAAA+TGG | + | tig0026186:40823-40842 | Msa1427370:intron | 25.0% |
| ! | CTTATTGTTCTGTATAAGTT+AGG | + | tig0026186:40886-40905 | Msa1427370:intron | 25.0% |
| ! | TAAGAAATTGGAAAGATGTT+AGG | - | tig0026186:41156-41175 | None:intergenic | 25.0% |
| ! | CTACTGAACAATTAAGAAAT+TGG | - | tig0026186:41168-41187 | None:intergenic | 25.0% |
| !!! | ATGATTTATTGTGTTTTTGC+AGG | + | tig0026186:41531-41550 | Msa1427370:intron | 25.0% |
| ! | GTGGTAATTCAAAATATAAC+AGG | - | tig0026186:41694-41713 | None:intergenic | 25.0% |
| !! | TCTTTGATAACAATCTTATG+TGG | - | tig0026186:41713-41732 | None:intergenic | 25.0% |
| ! | TGATAACAATCATAAGTCAA+TGG | - | tig0026186:41749-41768 | None:intergenic | 25.0% |
| ! | ACATAGCTAGTTATTTATTG+AGG | + | tig0026186:41828-41847 | Msa1427370:intron | 25.0% |
| !!! | TTATTTATTGAGGCCATTTT+TGG | + | tig0026186:41838-41857 | Msa1427370:intron | 25.0% |
| !!! | TATTTATTGAGGCCATTTTT+GGG | + | tig0026186:41839-41858 | Msa1427370:intron | 25.0% |
| ! | ACAGAACAAATAAATAGAAG+TGG | - | tig0026186:41933-41952 | None:intergenic | 25.0% |
| ! | GAGACAAATATTTGAAAGAT+TGG | + | tig0026186:41994-42013 | Msa1427370:intron | 25.0% |
| ! | GAAGTTAATGTTAGCAAATT+TGG | - | tig0026186:42081-42100 | None:intergenic | 25.0% |
| !!! | ATTTTTTCTCTGGCTTATTT+TGG | + | tig0026186:42290-42309 | Msa1427370:intron | 25.0% |
| ! | CAATCAAAATCAACTTGTAT+GGG | - | tig0026186:42412-42431 | None:intergenic | 25.0% |
| ! | TCAATCAAAATCAACTTGTA+TGG | - | tig0026186:42413-42432 | None:intergenic | 25.0% |
| !!! | CAAGTTGATTTTGATTGAAT+TGG | + | tig0026186:42415-42434 | Msa1427370:intron | 25.0% |
| !!! | TTTATTAACAGCTTGCTAAT+AGG | - | tig0026186:43052-43071 | None:intergenic | 25.0% |
| ! | GAAAAAGTTAATATCTGGAT+AGG | + | tig0026186:43122-43141 | Msa1427370:intron | 25.0% |
| ! | TTATATGTGTTAGAGTTTGT+TGG | + | tig0026186:43313-43332 | Msa1427370:intron | 25.0% |
| !!! | ATTATCTTTGAAGTGAACTT+GGG | - | tig0026186:43461-43480 | None:intergenic | 25.0% |
| !!! | TATAACTTGTTCAACTTACT+GGG | - | tig0026186:43535-43554 | None:intergenic | 25.0% |
| ! | ATTATACCAAAGTAAACTGT+TGG | - | tig0026186:43584-43603 | None:intergenic | 25.0% |
| ! | AGCTATTTGTAGAATTAAGA+GGG | - | tig0026186:43826-43845 | None:intergenic | 25.0% |
| ! | TGTTGTTGAGTACAAATATT+AGG | + | tig0026186:43845-43864 | Msa1427370:intron | 25.0% |
| !!! | TGTATGTTTTTTAGGCTTTT+AGG | + | tig0026186:43869-43888 | Msa1427370:intron | 25.0% |
| !! | ATGCTGATTATATATACCTA+TGG | + | tig0026186:43896-43915 | Msa1427370:intron | 25.0% |
| ! | ATTATATATACCTATGGAGT+TGG | + | tig0026186:43902-43921 | Msa1427370:intron | 25.0% |
| ! | ATGACATTGAACTAAATTTC+TGG | + | tig0026186:44127-44146 | Msa1427370:intron | 25.0% |
| ! | TGACATTGAACTAAATTTCT+GGG | + | tig0026186:44128-44147 | Msa1427370:intron | 25.0% |
| !!! | GACATTTTTTTTCCTTTTCT+CGG | + | tig0026186:44372-44391 | Msa1427370:intron | 25.0% |
| ! | GAAGACATTAATTTATGCAT+TGG | + | tig0026186:44617-44636 | Msa1427370:three_prime_UTR | 25.0% |
| ! | TAAAATACTCTAACATTGCA+AGG | - | tig0026186:44678-44697 | None:intergenic | 25.0% |
| ! | TAATTATAATAGAACCGCAA+TGG | - | tig0026186:44836-44855 | None:intergenic | 25.0% |
| ! | TGCGGTTCTATTATAATTAT+TGG | + | tig0026186:44837-44856 | Msa1427370:three_prime_UTR | 25.0% |
| ! | GAAAGTGTAAGGAAAAGATA+TGG | + | tig0026186:39159-39178 | Msa1427370:five_prime_UTR | 30.0% |
| GTAAGGAAAAGATATGGTTT+AGG | + | tig0026186:39165-39184 | Msa1427370:five_prime_UTR | 30.0% | |
| AAAATGAGAGTGACAAGTTT+GGG | - | tig0026186:39262-39281 | None:intergenic | 30.0% | |
| !!! | AAGGGGTTTTAGTTTGAAAA+GGG | - | tig0026186:39376-39395 | None:intergenic | 30.0% |
| !!! | AAAGGGGTTTTAGTTTGAAA+AGG | - | tig0026186:39377-39396 | None:intergenic | 30.0% |
| ! | GGTATAATTTGGCTTAAGAA+TGG | - | tig0026186:39457-39476 | None:intergenic | 30.0% |
| !! | TGAAGTTTTGATATATGGAG+AGG | + | tig0026186:39988-40007 | Msa1427370:intron | 30.0% |
| !! | GAAGTTTTGATATATGGAGA+GGG | + | tig0026186:39989-40008 | Msa1427370:intron | 30.0% |
| GTTACGAGTTAGCTAATTTA+GGG | + | tig0026186:40043-40062 | Msa1427370:intron | 30.0% | |
| !! | CCTTTTGTCATTTGAAAAGA+CGG | + | tig0026186:40099-40118 | Msa1427370:intron | 30.0% |
| !! | CTTTTGTCATTTGAAAAGAC+GGG | + | tig0026186:40100-40119 | Msa1427370:intron | 30.0% |
| TGTTAAAGATCCTGTATGAA+GGG | + | tig0026186:40127-40146 | Msa1427370:intron | 30.0% | |
| ! | GCCTTTTAGATTAAAGTTCT+TGG | + | tig0026186:40207-40226 | Msa1427370:intron | 30.0% |
| TTTGTTTAAATTCCGCTATG+TGG | - | tig0026186:40424-40443 | None:intergenic | 30.0% | |
| AAAATTAGCATTAACAGTCG+TGG | - | tig0026186:40464-40483 | None:intergenic | 30.0% | |
| ! | ATCCTCCATTTCTGAATTTT+AGG | + | tig0026186:40571-40590 | Msa1427370:intron | 30.0% |
| TACCTAAAATTCAGAAATGG+AGG | - | tig0026186:40576-40595 | None:intergenic | 30.0% | |
| AGCAATCTATGGTAAAATTC+CGG | - | tig0026186:40656-40675 | None:intergenic | 30.0% | |
| ! | GAATTTTACCATAGATTGCT+AGG | + | tig0026186:40656-40675 | Msa1427370:intron | 30.0% |
| TTATTCCAGGAAGAAAAGAA+TGG | - | tig0026186:40745-40764 | None:intergenic | 30.0% | |
| ! | GCATTTAAGTTCTTTATTCC+AGG | - | tig0026186:40758-40777 | None:intergenic | 30.0% |
| AGACAATGTCATATAGTAGT+TGG | - | tig0026186:40860-40879 | None:intergenic | 30.0% | |
| ACTTGTTTATTGCTATGTCT+AGG | + | tig0026186:40984-41003 | Msa1427370:intron | 30.0% | |
| ! | TGACTTTATTTCAGGTAACT+TGG | + | tig0026186:41341-41360 | Msa1427370:intron | 30.0% |
| ! | TTTATTTCAGGTAACTTGGT+TGG | + | tig0026186:41345-41364 | Msa1427370:intron | 30.0% |
| AAATCATAATTAGTGGTAGG+AGG | - | tig0026186:41518-41537 | None:intergenic | 30.0% | |
| !! | ATTTATTGTGTTTTTGCAGG+TGG | + | tig0026186:41534-41553 | Msa1427370:intron | 30.0% |
| !! | TTTATTGTGTTTTTGCAGGT+GGG | + | tig0026186:41535-41554 | Msa1427370:intron | 30.0% |
| ATTATATAGTGCTTTGTACC+TGG | + | tig0026186:41793-41812 | Msa1427370:intron | 30.0% | |
| TAGCAAATTTGGCATGATAT+AGG | - | tig0026186:42070-42089 | None:intergenic | 30.0% | |
| TTCTCAGACACTAAAACTTT+CGG | + | tig0026186:42104-42123 | Msa1427370:intron | 30.0% | |
| !! | TTAACTTGCATTTCCTTGTT+TGG | + | tig0026186:42245-42264 | Msa1427370:intron | 30.0% |
| AATACATAGGAAACCAAACA+AGG | - | tig0026186:42261-42280 | None:intergenic | 30.0% | |
| TTGATTGAATTGGATCAGAT+CGG | + | tig0026186:42425-42444 | Msa1427370:intron | 30.0% | |
| AGGTGTTTGCAAATTGAATA+GGG | - | tig0026186:42531-42550 | None:intergenic | 30.0% | |
| TAGGTGTTTGCAAATTGAAT+AGG | - | tig0026186:42532-42551 | None:intergenic | 30.0% | |
| CAATTTGCAAACACCTAAAA+AGG | + | tig0026186:42535-42554 | Msa1427370:intron | 30.0% | |
| AGCTAAAATAACTTCATCCA+GGG | - | tig0026186:42762-42781 | None:intergenic | 30.0% | |
| AAGCTAAAATAACTTCATCC+AGG | - | tig0026186:42763-42782 | None:intergenic | 30.0% | |
| !! | AGAAGTTGTTTTCAGAAATC+AGG | + | tig0026186:42834-42853 | Msa1427370:intron | 30.0% |
| ! | CATGTTATTTACCATTCTAC+AGG | + | tig0026186:42864-42883 | Msa1427370:intron | 30.0% |
| !!! | TGCCTATTTTTATGCATGAA+AGG | + | tig0026186:42981-43000 | Msa1427370:intron | 30.0% |
| !!! | GCCTATTTTTATGCATGAAA+GGG | + | tig0026186:42982-43001 | Msa1427370:intron | 30.0% |
| TCCCTTTCATGCATAAAAAT+AGG | - | tig0026186:42986-43005 | None:intergenic | 30.0% | |
| ATATCTGGATAGGATACTTT+CGG | + | tig0026186:43132-43151 | Msa1427370:intron | 30.0% | |
| AGGTATGGTTCTTAATGATT+AGG | + | tig0026186:43378-43397 | Msa1427370:intron | 30.0% | |
| !! | GCTTTATTATTTGGCAGTTT+TGG | + | tig0026186:43421-43440 | Msa1427370:intron | 30.0% |
| !! | GATTATCTTTGAAGTGAACT+TGG | - | tig0026186:43462-43481 | None:intergenic | 30.0% |
| GTTCACTTCAAAGATAATCA+CGG | + | tig0026186:43463-43482 | Msa1427370:CDS | 30.0% | |
| !! | CTATAACTTGTTCAACTTAC+TGG | - | tig0026186:43536-43555 | None:intergenic | 30.0% |
| ! | AAGTAAACTGTTGGCTAAAA+GGG | - | tig0026186:43575-43594 | None:intergenic | 30.0% |
| ! | AAAGTAAACTGTTGGCTAAA+AGG | - | tig0026186:43576-43595 | None:intergenic | 30.0% |
| ! | TTTTAGCCAACAGTTTACTT+TGG | + | tig0026186:43575-43594 | Msa1427370:intron | 30.0% |
| !!! | CATGTATTGACTTTTCAGAT+CGG | + | tig0026186:43639-43658 | Msa1427370:intron | 30.0% |
| !!! | ATGTATTGACTTTTCAGATC+GGG | + | tig0026186:43640-43659 | Msa1427370:intron | 30.0% |
| TGGATGTCAAGAATATCATT+TGG | + | tig0026186:43750-43769 | Msa1427370:CDS | 30.0% | |
| CTATTTGTAGAATTAAGAGG+GGG | - | tig0026186:43824-43843 | None:intergenic | 30.0% | |
| GCTATTTGTAGAATTAAGAG+GGG | - | tig0026186:43825-43844 | None:intergenic | 30.0% | |
| CAGCTATTTGTAGAATTAAG+AGG | - | tig0026186:43827-43846 | None:intergenic | 30.0% | |
| ! | CAGAACGAACATAATTTTTC+AGG | - | tig0026186:43987-44006 | None:intergenic | 30.0% |
| GATGTCAATCTTCTGTAATT+TGG | - | tig0026186:44059-44078 | None:intergenic | 30.0% | |
| GACATTGAACTAAATTTCTG+GGG | + | tig0026186:44129-44148 | Msa1427370:intron | 30.0% | |
| TGAGCGGAAAATAATTCATA+GGG | - | tig0026186:44590-44609 | None:intergenic | 30.0% | |
| ATGAGCGGAAAATAATTCAT+AGG | - | tig0026186:44591-44610 | None:intergenic | 30.0% | |
| AATGTCTTCTAAACAATGAG+CGG | - | tig0026186:44606-44625 | None:intergenic | 30.0% | |
| ATTATTGAAGATGGTTGTCG+TGG | - | tig0026186:39224-39243 | None:intergenic | 35.0% | |
| GAAAATGAGAGTGACAAGTT+TGG | - | tig0026186:39263-39282 | None:intergenic | 35.0% | |
| GAATGTGGAATGAATGAAAG+TGG | - | tig0026186:39338-39357 | None:intergenic | 35.0% | |
| TAGATTGCTGGAAGAGAAAA+GGG | - | tig0026186:39394-39413 | None:intergenic | 35.0% | |
| ATAGATTGCTGGAAGAGAAA+AGG | - | tig0026186:39395-39414 | None:intergenic | 35.0% | |
| ! | TGGTCTCTGAAAATAACTCT+GGG | - | tig0026186:39432-39451 | None:intergenic | 35.0% |
| ! | ATGGTCTCTGAAAATAACTC+TGG | - | tig0026186:39433-39452 | None:intergenic | 35.0% |
| ! | AATTTGGCTTAAGAATGGCA+TGG | - | tig0026186:39452-39471 | None:intergenic | 35.0% |
| CAAATTATACCTATCCACCT+CGG | + | tig0026186:39466-39485 | Msa1427370:CDS | 35.0% | |
| TTATTAAGGATATTCCTCCG+AGG | - | tig0026186:39486-39505 | None:intergenic | 35.0% | |
| TGTTGTAGTAACGTTTGATC+TGG | + | tig0026186:39517-39536 | Msa1427370:intron | 35.0% | |
| ! | ATTACCTTTTTGACGCTAGA+TGG | - | tig0026186:39715-39734 | None:intergenic | 35.0% |
| ATAACTGGATGTAACCAAGA+TGG | + | tig0026186:39807-39826 | Msa1427370:intron | 35.0% | |
| ! | TTCATATTGAAGGTGTGTCT+GGG | - | tig0026186:39863-39882 | None:intergenic | 35.0% |
| ! | ATTCATATTGAAGGTGTGTC+TGG | - | tig0026186:39864-39883 | None:intergenic | 35.0% |
| TGCATAGCTTATACAAGCAA+TGG | + | tig0026186:39893-39912 | Msa1427370:intron | 35.0% | |
| GCATAGCTTATACAAGCAAT+GGG | + | tig0026186:39894-39913 | Msa1427370:intron | 35.0% | |
| CTTACTGAGAATTATGGAGA+GGG | + | tig0026186:39930-39949 | Msa1427370:intron | 35.0% | |
| GGTTACGAGTTAGCTAATTT+AGG | + | tig0026186:40042-40061 | Msa1427370:intron | 35.0% | |
| ! | CCGTCTTTTCAAATGACAAA+AGG | - | tig0026186:40102-40121 | None:intergenic | 35.0% |
| CTGTTAAAGATCCTGTATGA+AGG | + | tig0026186:40126-40145 | Msa1427370:intron | 35.0% | |
| GTGCAAATACTGTCAAGTAA+CGG | + | tig0026186:40387-40406 | Msa1427370:intron | 35.0% | |
| AAGCAATTACAGATAACCTC+AGG | + | tig0026186:40489-40508 | Msa1427370:intron | 35.0% | |
| ! | CTAGTCCATAATCTTTGAGA+CGG | - | tig0026186:40614-40633 | None:intergenic | 35.0% |
| ATCAGAATCCTAGCAATCTA+TGG | - | tig0026186:40667-40686 | None:intergenic | 35.0% | |
| ! | TTCATCCATTCTTTTCTTCC+TGG | + | tig0026186:40737-40756 | Msa1427370:intron | 35.0% |
| TCTGTATAAGTTAGGTACTC+TGG | + | tig0026186:40894-40913 | Msa1427370:intron | 35.0% | |
| TCAGCTTCAACAAACATATC+TGG | + | tig0026186:41025-41044 | Msa1427370:CDS | 35.0% | |
| !!! | TAATTTTCTCATACTGGCTC+AGG | - | tig0026186:41075-41094 | None:intergenic | 35.0% |
| ATTGTTCAGTAGTTGAAAGC+TGG | + | tig0026186:41176-41195 | Msa1427370:intron | 35.0% | |
| AACACTGCATATCCCAAAAA+TGG | - | tig0026186:41854-41873 | None:intergenic | 35.0% | |
| ATATGCAGTGTTTCTTTGTG+TGG | + | tig0026186:41862-41881 | Msa1427370:intron | 35.0% | |
| TATGCAGTGTTTCTTTGTGT+GGG | + | tig0026186:41863-41882 | Msa1427370:intron | 35.0% | |
| AAAATAAGACCAGTTGCAAG+AGG | - | tig0026186:42132-42151 | None:intergenic | 35.0% | |
| !!! | TCTTGCAACTGGTCTTATTT+TGG | + | tig0026186:42131-42150 | Msa1427370:CDS | 35.0% |
| TGTTGCAACATACATATCCA+AGG | + | tig0026186:42185-42204 | Msa1427370:CDS | 35.0% | |
| GTTGCAACATACATATCCAA+GGG | + | tig0026186:42186-42205 | Msa1427370:CDS | 35.0% | |
| !!! | GGCTTATTTTGGTTGCTATT+TGG | + | tig0026186:42301-42320 | Msa1427370:intron | 35.0% |
| !! | ATGCTTGCTGTCTTTAAAAG+AGG | + | tig0026186:42360-42379 | Msa1427370:intron | 35.0% |
| AAATCAACTTGTATGGGATC+AGG | - | tig0026186:42406-42425 | None:intergenic | 35.0% | |
| CACAAATTTAGGTGTGTGTT+TGG | - | tig0026186:42578-42597 | None:intergenic | 35.0% | |
| CAAACACACACCTAAATTTG+TGG | + | tig0026186:42576-42595 | Msa1427370:intron | 35.0% | |
| !!! | AATCAGAGAAGTACTTTTGC+AGG | - | tig0026186:42633-42652 | None:intergenic | 35.0% |
| CGTGTTTGAAGAGGATATTT+AGG | - | tig0026186:42668-42687 | None:intergenic | 35.0% | |
| AATTACTCTTGTGTGTGTCA+TGG | + | tig0026186:42716-42735 | Msa1427370:intron | 35.0% | |
| ATAGTTGAACACCTGTAGAA+TGG | - | tig0026186:42878-42897 | None:intergenic | 35.0% | |
| TTCTACAGGTGTTCAACTAT+TGG | + | tig0026186:42878-42897 | Msa1427370:intron | 35.0% | |
| !! | ATTAACAGCTTGCTAATAGG+AGG | - | tig0026186:43049-43068 | None:intergenic | 35.0% |
| ! | TGTTGCTCTTTCTCTTTTTC+AGG | + | tig0026186:43218-43237 | Msa1427370:intron | 35.0% |
| !! | GTTGCTCTTTCTCTTTTTCA+GGG | + | tig0026186:43219-43238 | Msa1427370:intron | 35.0% |
| AGGGACTAAAACAACTTGAA+AGG | - | tig0026186:43259-43278 | None:intergenic | 35.0% | |
| !!! | TGTTTTAGTCCCTACAATTG+TGG | + | tig0026186:43266-43285 | Msa1427370:CDS | 35.0% |
| !! | GTTTTAGTCCCTACAATTGT+GGG | + | tig0026186:43267-43286 | Msa1427370:CDS | 35.0% |
| !! | ATGTGTTAGAGTTTGTTGGA+CGG | + | tig0026186:43317-43336 | Msa1427370:intron | 35.0% |
| TATACTAATGTGTCTCCACT+TGG | + | tig0026186:43351-43370 | Msa1427370:intron | 35.0% | |
| GTCAGAATAACTCCTATCAA+AGG | - | tig0026186:43494-43513 | None:intergenic | 35.0% | |
| !! | CTGCATTTGCTATTGGTTAT+TGG | + | tig0026186:43730-43749 | Msa1427370:CDS | 35.0% |
| CAAACAACAAGAAAAGCTAG+AGG | - | tig0026186:44029-44048 | None:intergenic | 35.0% | |
| GTCAATCTTCTGTAATTTGG+CGG | - | tig0026186:44056-44075 | None:intergenic | 35.0% | |
| ! | TTGAACTAAATTTCTGGGGA+AGG | + | tig0026186:44133-44152 | Msa1427370:intron | 35.0% |
| ! | TGAACTAAATTTCTGGGGAA+GGG | + | tig0026186:44134-44153 | Msa1427370:intron | 35.0% |
| AAAGTCGTCTTTGTCATCAA+CGG | - | tig0026186:44527-44546 | None:intergenic | 35.0% | |
| TGATGACAAAGACGACTTTA+AGG | + | tig0026186:44528-44547 | Msa1427370:CDS | 35.0% | |
| ATTTAAACCAGTGTGAAGAG+TGG | + | tig0026186:44721-44740 | Msa1427370:three_prime_UTR | 35.0% | |
| CTGAATATCACTAGTTGAAG+TGG | - | tig0026186:44886-44905 | None:intergenic | 35.0% | |
| GATATTTGCAGAGTCGTTTG+TGG | + | tig0026186:39187-39206 | Msa1427370:five_prime_UTR | 40.0% | |
| AAGCGAAGTAGTGAATGAGT+AGG | - | tig0026186:39312-39331 | None:intergenic | 40.0% | |
| AGATTGCTGGAAGAGAAAAG+GGG | - | tig0026186:39393-39412 | None:intergenic | 40.0% | |
| TCTGAAAATAACTCTGGGCA+TGG | - | tig0026186:39427-39446 | None:intergenic | 40.0% | |
| CGAGGTGGATAGGTATAATT+TGG | - | tig0026186:39468-39487 | None:intergenic | 40.0% | |
| TGCATTTAGAAGTGAGTTGC+AGG | + | tig0026186:39646-39665 | Msa1427370:CDS | 40.0% | |
| GCATTTAGAAGTGAGTTGCA+GGG | + | tig0026186:39647-39666 | Msa1427370:CDS | 40.0% | |
| CCAGTAGCAACAATTGGATT+AGG | - | tig0026186:39674-39693 | None:intergenic | 40.0% | |
| CCTAATCCAATTGTTGCTAC+TGG | + | tig0026186:39671-39690 | Msa1427370:CDS | 40.0% | |
| TTAGCACCAGTAGCAACAAT+TGG | - | tig0026186:39680-39699 | None:intergenic | 40.0% | |
| !! | TTTGACGCTAGATGGACTAA+GGG | - | tig0026186:39707-39726 | None:intergenic | 40.0% |
| !!! | TTTTGACGCTAGATGGACTA+AGG | - | tig0026186:39708-39727 | None:intergenic | 40.0% |
| TAGTCCATCTAGCGTCAAAA+AGG | + | tig0026186:39708-39727 | Msa1427370:CDS | 40.0% | |
| GCATGCCTTACTGAGAATTA+TGG | + | tig0026186:39924-39943 | Msa1427370:intron | 40.0% | |
| CCTCTCCATAATTCTCAGTA+AGG | - | tig0026186:39932-39951 | None:intergenic | 40.0% | |
| CCTTACTGAGAATTATGGAG+AGG | + | tig0026186:39929-39948 | Msa1427370:intron | 40.0% | |
| TTATGGAGAGGGATGTGTAA+TGG | + | tig0026186:39941-39960 | Msa1427370:intron | 40.0% | |
| CGTAACCTGCATAATGCATA+CGG | - | tig0026186:40029-40048 | None:intergenic | 40.0% | |
| ACGAGTTAGCTAATTTAGGG+CGG | + | tig0026186:40046-40065 | Msa1427370:intron | 40.0% | |
| TGTTATGGGAAGAGTGGAAA+AGG | - | tig0026186:40294-40313 | None:intergenic | 40.0% | |
| TGCTATAGTCCAGGTATAGT+CGG | - | tig0026186:40317-40336 | None:intergenic | 40.0% | |
| ATACCTGGACTATAGCATAG+CGG | + | tig0026186:40320-40339 | Msa1427370:intron | 40.0% | |
| !! | TCCATAATCTTTGAGACGGA+GGG | - | tig0026186:40610-40629 | None:intergenic | 40.0% |
| ! | TAACCACTCTTTTTCCCGTT+TGG | + | tig0026186:41104-41123 | Msa1427370:CDS | 40.0% |
| ! | AACCACTCTTTTTCCCGTTT+GGG | + | tig0026186:41105-41124 | Msa1427370:CDS | 40.0% |
| AAGCCTTAGACTTACCCAAA+CGG | - | tig0026186:41122-41141 | None:intergenic | 40.0% | |
| !! | TGACTTTAACTTGTATGCGC+AGG | + | tig0026186:41200-41219 | Msa1427370:intron | 40.0% |
| TCTTTCTGCAGCTAGTTACA+TGG | + | tig0026186:41274-41293 | Msa1427370:intron | 40.0% | |
| GAGACAGACCTATTTACTCT+TGG | + | tig0026186:41367-41386 | Msa1427370:CDS | 40.0% | |
| AGACCTATTTACTCTTGGCT+TGG | + | tig0026186:41372-41391 | Msa1427370:CDS | 40.0% | |
| GACCTATTTACTCTTGGCTT+GGG | + | tig0026186:41373-41392 | Msa1427370:CDS | 40.0% | |
| AACCCAAGCCAAGAGTAAAT+AGG | - | tig0026186:41378-41397 | None:intergenic | 40.0% | |
| TGCAATGAAAAAGCCTAGCA+CGG | - | tig0026186:41593-41612 | None:intergenic | 40.0% | |
| !!! | GCTAGGCTTTTTCATTGCAA+TGG | + | tig0026186:41594-41613 | Msa1427370:CDS | 40.0% |
| CTATGTTAAGTCCTACAACC+AGG | - | tig0026186:41814-41833 | None:intergenic | 40.0% | |
| ! | GTTTCTTTGTGTGGGTTACT+TGG | + | tig0026186:41871-41890 | Msa1427370:intron | 40.0% |
| AGAAGTGGCAGACATCAATA+TGG | - | tig0026186:41918-41937 | None:intergenic | 40.0% | |
| ACTTGTATGGGATCAGGTTT+CGG | - | tig0026186:42400-42419 | None:intergenic | 40.0% | |
| ! | CGGTACAAGAAAGCCTTTTT+AGG | - | tig0026186:42551-42570 | None:intergenic | 40.0% |
| TTAGGTGTGTGTTTGGATTG+CGG | - | tig0026186:42571-42590 | None:intergenic | 40.0% | |
| AACTTCATCCAGGGATAACA+CGG | - | tig0026186:42753-42772 | None:intergenic | 40.0% | |
| TCTTACCTCCCACAATTGTA+GGG | - | tig0026186:43278-43297 | None:intergenic | 40.0% | |
| ATCTTACCTCCCACAATTGT+AGG | - | tig0026186:43279-43298 | None:intergenic | 40.0% | |
| !! | TGTGTTAGAGTTTGTTGGAC+GGG | + | tig0026186:43318-43337 | Msa1427370:intron | 40.0% |
| ! | TAAACTGTTGGCTAAAAGGG+TGG | - | tig0026186:43572-43591 | None:intergenic | 40.0% |
| TGCAAAGCAAGAATGACAAG+TGG | - | tig0026186:43609-43628 | None:intergenic | 40.0% | |
| CTTGTCATTCTTGCTTTGCA+TGG | + | tig0026186:43609-43628 | Msa1427370:intron | 40.0% | |
| !! | GCGGAAGTGTTAAAAACTCA+AGG | + | tig0026186:43669-43688 | Msa1427370:CDS | 40.0% |
| GATAGATATTGTGCGTGATG+TGG | - | tig0026186:43781-43800 | None:intergenic | 40.0% | |
| GCACAATATCTATCGAGTGT+GGG | + | tig0026186:43787-43806 | Msa1427370:CDS | 40.0% | |
| CAACAAGAAAAGCTAGAGGT+GGG | - | tig0026186:44025-44044 | None:intergenic | 40.0% | |
| ACAACAAGAAAAGCTAGAGG+TGG | - | tig0026186:44026-44045 | None:intergenic | 40.0% | |
| ATCTTCTGTAATTTGGCGGT+AGG | - | tig0026186:44052-44071 | None:intergenic | 40.0% | |
| ! | GAACTAAATTTCTGGGGAAG+GGG | + | tig0026186:44135-44154 | Msa1427370:intron | 40.0% |
| ! | TTTCCTTTTCTCGGTCTCTT+TGG | + | tig0026186:44381-44400 | Msa1427370:intron | 40.0% |
| AAACCAAAGAGACCGAGAAA+AGG | - | tig0026186:44387-44406 | None:intergenic | 40.0% | |
| TCTTTGTCATCAACGGGAAT+TGG | - | tig0026186:44520-44539 | None:intergenic | 40.0% | |
| AAGTCGTCTTTGTCATCAAC+GGG | - | tig0026186:44526-44545 | None:intergenic | 40.0% | |
| ATAATTCATAGGGCTTGCAG+TGG | - | tig0026186:44580-44599 | None:intergenic | 40.0% | |
| ATGCCCATGTAGCAACAAAA+AGG | + | tig0026186:44755-44774 | Msa1427370:three_prime_UTR | 40.0% | |
| TGCCCATGTAGCAACAAAAA+GGG | + | tig0026186:44756-44775 | Msa1427370:three_prime_UTR | 40.0% | |
| ! | GTCCCTTTTTGTTGCTACAT+GGG | - | tig0026186:44761-44780 | None:intergenic | 40.0% |
| ! | TGTCCCTTTTTGTTGCTACA+TGG | - | tig0026186:44762-44781 | None:intergenic | 40.0% |
| !! | ATTGGTCTTGTCTTGCATTG+TGG | + | tig0026186:44855-44874 | Msa1427370:three_prime_UTR | 40.0% |
| ! | TGCATATAGTTTGCGAGTCC+AGG | + | tig0026186:39129-39148 | Msa1427370:five_prime_UTR | 45.0% |
| CTCTTCCAGCAATCTATCCA+TGG | + | tig0026186:39398-39417 | Msa1427370:exon | 45.0% | |
| ATTATACCTATCCACCTCGG+AGG | + | tig0026186:39469-39488 | Msa1427370:CDS | 45.0% | |
| TTAAGGATATTCCTCCGAGG+TGG | - | tig0026186:39483-39502 | None:intergenic | 45.0% | |
| TATACAAGCAATGGGCCTAG+TGG | + | tig0026186:39902-39921 | Msa1427370:intron | 45.0% | |
| ACCTGCATAATGCATACGGA+AGG | - | tig0026186:40025-40044 | None:intergenic | 45.0% | |
| ! | AACAGACTAGCCCTTCATAC+AGG | - | tig0026186:40140-40159 | None:intergenic | 45.0% |
| !! | CCAGGTATAGTCGGTGTTAT+GGG | - | tig0026186:40308-40327 | None:intergenic | 45.0% |
| !! | TCCAGGTATAGTCGGTGTTA+TGG | - | tig0026186:40309-40328 | None:intergenic | 45.0% |
| ATTCCGCTATGCTATAGTCC+AGG | - | tig0026186:40326-40345 | None:intergenic | 45.0% | |
| GCTATAGCATTGCCACATAG+CGG | + | tig0026186:40409-40428 | Msa1427370:intron | 45.0% | |
| GCATTAACAGTCGTGGATAG+TGG | - | tig0026186:40457-40476 | None:intergenic | 45.0% | |
| GAAAAAGCAATCTGAGCCTG+AGG | - | tig0026186:40508-40527 | None:intergenic | 45.0% | |
| !! | GTCCATAATCTTTGAGACGG+AGG | - | tig0026186:40611-40630 | None:intergenic | 45.0% |
| !! | GAGATGTTCCTGAAAGTGCT+GGG | + | tig0026186:41047-41066 | Msa1427370:CDS | 45.0% |
| !! | AGATGTTCCTGAAAGTGCTG+GGG | + | tig0026186:41048-41067 | Msa1427370:CDS | 45.0% |
| TACCCAAACGGGAAAAAGAG+TGG | - | tig0026186:41110-41129 | None:intergenic | 45.0% | |
| TTCCCGTTTGGGTAAGTCTA+AGG | + | tig0026186:41116-41135 | Msa1427370:intron | 45.0% | |
| AGCCTTAGACTTACCCAAAC+GGG | - | tig0026186:41121-41140 | None:intergenic | 45.0% | |
| TTGTATGCGCAGGTCATCTT+GGG | + | tig0026186:41210-41229 | Msa1427370:intron | 45.0% | |
| AAGACAGTTCTTACAGCAGC+TGG | - | tig0026186:41258-41277 | None:intergenic | 45.0% | |
| GGTTTCCTCATGCTGTCTAT+GGG | + | tig0026186:41394-41413 | Msa1427370:CDS | 45.0% | |
| TCAAACCCATAGACAGCATG+AGG | - | tig0026186:41402-41421 | None:intergenic | 45.0% | |
| TGTTTGTCCCTTACAGTCCA+CGG | - | tig0026186:41463-41482 | None:intergenic | 45.0% | |
| TATTTGATCAAGCCCGTGCT+AGG | + | tig0026186:41577-41596 | Msa1427370:CDS | 45.0% | |
| GCAATGAAAAAGCCTAGCAC+GGG | - | tig0026186:41592-41611 | None:intergenic | 45.0% | |
| AGTGCTTTGTACCTGGTTGT+AGG | + | tig0026186:41800-41819 | Msa1427370:intron | 45.0% | |
| !! | ATTTTGGTCTCGTGTTGTCC+TGG | + | tig0026186:42147-42166 | Msa1427370:CDS | 45.0% |
| TCAGCTTTGCGTGTTTGAAG+AGG | - | tig0026186:42677-42696 | None:intergenic | 45.0% | |
| GAACTTACAGCAGCATCAAC+AGG | - | tig0026186:42956-42975 | None:intergenic | 45.0% | |
| GTTGATGCTGCTGTAAGTTC+TGG | + | tig0026186:42956-42975 | Msa1427370:intron | 45.0% | |
| !!! | TCTTTCTCTTTTTCAGGGCC+TGG | + | tig0026186:43224-43243 | Msa1427370:intron | 45.0% |
| !! | CTTGAAAGGTGCTAATTGCC+AGG | - | tig0026186:43245-43264 | None:intergenic | 45.0% |
| TTAGTCCCTACAATTGTGGG+AGG | + | tig0026186:43270-43289 | Msa1427370:CDS | 45.0% | |
| !! | ATGTGTCTCCACTTGGTGTA+AGG | + | tig0026186:43358-43377 | Msa1427370:intron | 45.0% |
| !! | TCTCCACTTGGTGTAAGGTA+TGG | + | tig0026186:43363-43382 | Msa1427370:intron | 45.0% |
| GAACCATACCTTACACCAAG+TGG | - | tig0026186:43369-43388 | None:intergenic | 45.0% | |
| ATCACGGTCACACCTTTGAT+AGG | + | tig0026186:43479-43498 | Msa1427370:CDS | 45.0% | |
| AACTTACTGGGCTTGCACAA+AGG | - | tig0026186:43523-43542 | None:intergenic | 45.0% | |
| ATGCAGCAGCATGTAAAGCA+AGG | - | tig0026186:43716-43735 | None:intergenic | 45.0% | |
| !! | CATGCTGCTGCATTTGCTAT+TGG | + | tig0026186:43723-43742 | Msa1427370:CDS | 45.0% |
| CGCACAATATCTATCGAGTG+TGG | + | tig0026186:43786-43805 | Msa1427370:CDS | 45.0% | |
| TGCTAAGATGCCAACTCCAT+AGG | - | tig0026186:43915-43934 | None:intergenic | 45.0% | |
| CAGAAGGAACAGCTACAAGT+GGG | - | tig0026186:44320-44339 | None:intergenic | 45.0% | |
| ATTACTGCCGTAATGCAGCT+TGG | + | tig0026186:44460-44479 | Msa1427370:intron | 45.0% | |
| TTTGTTGCCACTCTTCACAC+TGG | - | tig0026186:44731-44750 | None:intergenic | 45.0% | |
| CCATGGTAGGATCCAATGAA+CGG | + | tig0026186:44804-44823 | Msa1427370:three_prime_UTR | 45.0% | |
| ! | CAATGGATTCGACCGTTCAT+TGG | - | tig0026186:44819-44838 | None:intergenic | 45.0% |
| ATGAACGGTCGAATCCATTG+CGG | + | tig0026186:44819-44838 | Msa1427370:three_prime_UTR | 45.0% | |
| !!! | TTCTTTAATTTTTTTTTTTT+TGG | + | tig0026186:41620-41639 | Msa1427370:intron | 5.0% |
| !! | AATAATATAATATAATTTCA+TGG | - | tig0026186:44992-45011 | None:intergenic | 5.0% |
| ! | TATAGTTTGCGAGTCCAGGC+TGG | + | tig0026186:39133-39152 | Msa1427370:five_prime_UTR | 50.0% |
| CTTACACTTTCAAGCCAGCC+TGG | - | tig0026186:39150-39169 | None:intergenic | 50.0% | |
| !! | CAGGCTGGCTTGAAAGTGTA+AGG | + | tig0026186:39148-39167 | Msa1427370:five_prime_UTR | 50.0% |
| GGAAGCCATGGATAGATTGC+TGG | - | tig0026186:39406-39425 | None:intergenic | 50.0% | |
| GATATTCCTCCGAGGTGGAT+AGG | - | tig0026186:39478-39497 | None:intergenic | 50.0% | |
| TCTCAGTAAGGCATGCCACT+AGG | - | tig0026186:39920-39939 | None:intergenic | 50.0% | |
| GCCTTCCGTATGCATTATGC+AGG | + | tig0026186:40021-40040 | Msa1427370:intron | 50.0% | |
| ! | GGAACAAGGGAAGAGTGCAT+TGG | + | tig0026186:40264-40283 | Msa1427370:intron | 50.0% |
| !! | AGTCGGTGTTATGGGAAGAG+TGG | - | tig0026186:40300-40319 | None:intergenic | 50.0% |
| ! | CCCATAACACCGACTATACC+TGG | + | tig0026186:40305-40324 | Msa1427370:intron | 50.0% |
| GCCCTCCGTCTCAAAGATTA+TGG | + | tig0026186:40606-40625 | Msa1427370:intron | 50.0% | |
| ! | GGAGATGTTCCTGAAAGTGC+TGG | + | tig0026186:41046-41065 | Msa1427370:CDS | 50.0% |
| !! | GATGTTCCTGAAAGTGCTGG+GGG | + | tig0026186:41049-41068 | Msa1427370:CDS | 50.0% |
| CTTGTATGCGCAGGTCATCT+TGG | + | tig0026186:41209-41228 | Msa1427370:intron | 50.0% | |
| TGTATGCGCAGGTCATCTTG+GGG | + | tig0026186:41211-41230 | Msa1427370:intron | 50.0% | |
| !! | CAGCTGGCTTGTAAATACCG+AGG | - | tig0026186:41242-41261 | None:intergenic | 50.0% |
| GGGTTTCCTCATGCTGTCTA+TGG | + | tig0026186:41393-41412 | Msa1427370:CDS | 50.0% | |
| ! | TGCGAAATCCGTGGACTGTA+AGG | + | tig0026186:41452-41471 | Msa1427370:intron | 50.0% |
| ! | GCGAAATCCGTGGACTGTAA+GGG | + | tig0026186:41453-41472 | Msa1427370:intron | 50.0% |
| !! | TGTGTTTTTGCAGGTGGGTG+TGG | + | tig0026186:41540-41559 | Msa1427370:intron | 50.0% |
| !! | GTGTTTTTGCAGGTGGGTGT+GGG | + | tig0026186:41541-41560 | Msa1427370:intron | 50.0% |
| !! | TGTTTTTGCAGGTGGGTGTG+GGG | + | tig0026186:41542-41561 | Msa1427370:intron | 50.0% |
| ! | CTAGTTGATGCACTGTGCTG+TGG | + | tig0026186:42034-42053 | Msa1427370:intron | 50.0% |
| ACATTTGATGCCTGACCTCC+AGG | - | tig0026186:42168-42187 | None:intergenic | 50.0% | |
| AGAGAGAGCAACGTTTCCCT+TGG | - | tig0026186:42205-42224 | None:intergenic | 50.0% | |
| GCTAGAAGCTTCGTTAGGAG+TGG | - | tig0026186:42920-42939 | None:intergenic | 50.0% | |
| CTCCTAACGAAGCTTCTAGC+TGG | + | tig0026186:42920-42939 | Msa1427370:CDS | 50.0% | |
| GACCAGCTAGAAGCTTCGTT+AGG | - | tig0026186:42925-42944 | None:intergenic | 50.0% | |
| TACTGGGCTTGCACAAAGGA+GGG | - | tig0026186:43519-43538 | None:intergenic | 50.0% | |
| TTACTGGGCTTGCACAAAGG+AGG | - | tig0026186:43520-43539 | None:intergenic | 50.0% | |
| ! | TTTTCAGATCGGGCAAGTCG+CGG | + | tig0026186:43650-43669 | Msa1427370:intron | 50.0% |
| GCAGCATGTAAAGCAAGGAC+TGG | - | tig0026186:43711-43730 | None:intergenic | 50.0% | |
| ATCTATCGAGTGTGGGATGC+AGG | + | tig0026186:43794-43813 | Msa1427370:CDS | 50.0% | |
| ! | GAGGTGGGTTCTCTTGGTAT+GGG | - | tig0026186:44010-44029 | None:intergenic | 50.0% |
| ! | AGAGGTGGGTTCTCTTGGTA+TGG | - | tig0026186:44011-44030 | None:intergenic | 50.0% |
| ! | AAGCTAGAGGTGGGTTCTCT+TGG | - | tig0026186:44016-44035 | None:intergenic | 50.0% |
| TGTTTGCAGAGCTCTGCACT+TGG | + | tig0026186:44264-44283 | Msa1427370:intron | 50.0% | |
| AGGAACAGCTACAAGTGGGT+TGG | - | tig0026186:44316-44335 | None:intergenic | 50.0% | |
| GCAGAAGGAACAGCTACAAG+TGG | - | tig0026186:44321-44340 | None:intergenic | 50.0% | |
| CAGACAACACTGACAGCAGA+AGG | - | tig0026186:44336-44355 | None:intergenic | 50.0% | |
| TGCTGTCAGTGTTGTCTGCA+TGG | + | tig0026186:44338-44357 | Msa1427370:CDS | 50.0% | |
| TGTCAGTGTTGTCTGCATGG+CGG | + | tig0026186:44341-44360 | Msa1427370:CDS | 50.0% | |
| TGTCTGCATGGCGGTAAGAT+AGG | + | tig0026186:44350-44369 | Msa1427370:intron | 50.0% | |
| ACTCCCACCAAGCTGCATTA+CGG | - | tig0026186:44470-44489 | None:intergenic | 50.0% | |
| ! | GGAGTGCTCTAGCTGTGTAT+TGG | + | tig0026186:44485-44504 | Msa1427370:CDS | 50.0% |
| GTGCTCTAGCTGTGTATTGG+AGG | + | tig0026186:44488-44507 | Msa1427370:CDS | 50.0% | |
| TAGCTACTGAGCTCTTGCCA+TGG | + | tig0026186:44787-44806 | Msa1427370:three_prime_UTR | 50.0% | |
| TACTGAGCTCTTGCCATGGT+AGG | + | tig0026186:44791-44810 | Msa1427370:three_prime_UTR | 50.0% | |
| CCGTTCATTGGATCCTACCA+TGG | - | tig0026186:44807-44826 | None:intergenic | 50.0% | |
| AACTCTGGGCATGGAAGCCA+TGG | - | tig0026186:39418-39437 | None:intergenic | 55.0% | |
| GAAACTGACGCACGCCATCT+TGG | - | tig0026186:39824-39843 | None:intergenic | 55.0% | |
| GTATGCGCAGGTCATCTTGG+GGG | + | tig0026186:41212-41231 | Msa1427370:intron | 55.0% | |
| GACGATGTCTGCGAAATCCG+TGG | + | tig0026186:41443-41462 | Msa1427370:CDS | 55.0% | |
| CTTTCGGCTCCTCTTGCAAC+TGG | + | tig0026186:42120-42139 | Msa1427370:CDS | 55.0% | |
| TTGGTCTCGTGTTGTCCTGG+AGG | + | tig0026186:42150-42169 | Msa1427370:CDS | 55.0% | |
| ACTGCCGTAATGCAGCTTGG+TGG | + | tig0026186:44463-44482 | Msa1427370:intron | 55.0% | |
| CTGCCGTAATGCAGCTTGGT+GGG | + | tig0026186:44464-44483 | Msa1427370:intron | 55.0% | |
| GGCAAGAGCTCAGTAGCTAG+AGG | - | tig0026186:44786-44805 | None:intergenic | 55.0% | |
| GGCGTGCGTCAGTTTCGTGT+TGG | + | tig0026186:39828-39847 | Msa1427370:intron | 60.0% | |
| GTCATCTTGGGGGCTCTCCT+CGG | + | tig0026186:41222-41241 | Msa1427370:CDS | 60.0% | |
| CTCGTGTTGTCCTGGAGGTC+AGG | + | tig0026186:42155-42174 | Msa1427370:CDS | 60.0% | |
| CAGCTGTGCCGTGTTATCCC+TGG | + | tig0026186:42742-42761 | Msa1427370:intron | 60.0% | |
| TGGGCTTGCACAAAGGAGGG+TGG | - | tig0026186:43516-43535 | None:intergenic | 60.0% | |
| CTCAGGCCCCCAGCACTTTC+AGG | - | tig0026186:41058-41077 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026186 | gene | 39088 | 45018 | 39088 | ID=Msa1427370;Name=Msa1427370 |
| tig0026186 | mRNA | 39088 | 45018 | 39088 | ID=Msa1427370-mRNA-1;Parent=Msa1427370;Name=Msa1427370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=329|1|1|1|1|1|13|463|410 |
| tig0026186 | exon | 39088 | 39513 | 39088 | ID=Msa1427370-mRNA-1:exon:5371;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 39621 | 39729 | 39621 | ID=Msa1427370-mRNA-1:exon:5372;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 41006 | 41126 | 41006 | ID=Msa1427370-mRNA-1:exon:5373;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 41222 | 41263 | 41222 | ID=Msa1427370-mRNA-1:exon:5374;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 41355 | 41468 | 41355 | ID=Msa1427370-mRNA-1:exon:5375;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 41553 | 41615 | 41553 | ID=Msa1427370-mRNA-1:exon:5376;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 42111 | 42238 | 42111 | ID=Msa1427370-mRNA-1:exon:5377;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 42886 | 42967 | 42886 | ID=Msa1427370-mRNA-1:exon:5378;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 43240 | 43291 | 43240 | ID=Msa1427370-mRNA-1:exon:5379;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 43438 | 43535 | 43438 | ID=Msa1427370-mRNA-1:exon:5380;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 43657 | 43815 | 43657 | ID=Msa1427370-mRNA-1:exon:5381;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 44273 | 44362 | 44273 | ID=Msa1427370-mRNA-1:exon:5382;Parent=Msa1427370-mRNA-1 |
| tig0026186 | exon | 44478 | 45018 | 44478 | ID=Msa1427370-mRNA-1:exon:5383;Parent=Msa1427370-mRNA-1 |
| tig0026186 | five_prime_UTR | 39088 | 39416 | 39088 | ID=Msa1427370-mRNA-1:five_prime_utr;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 39417 | 39513 | 39417 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 39621 | 39729 | 39621 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 41006 | 41126 | 41006 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 41222 | 41263 | 41222 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 41355 | 41468 | 41355 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 41553 | 41615 | 41553 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 42111 | 42238 | 42111 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 42886 | 42967 | 42886 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 43240 | 43291 | 43240 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 43438 | 43535 | 43438 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 43657 | 43815 | 43657 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 44273 | 44362 | 44273 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | CDS | 44478 | 44555 | 44478 | ID=Msa1427370-mRNA-1:cds;Parent=Msa1427370-mRNA-1 |
| tig0026186 | three_prime_UTR | 44556 | 45018 | 44556 | ID=Msa1427370-mRNA-1:three_prime_utr;Parent=Msa1427370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
