AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0114700


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114700 MtrunA17_Chr1g0179231 95.872 218 6 1 1 215 1 218 1.71e-152 421
Msa0114700 MtrunA17_Chr1g0179681 34.437 151 86 6 32 175 87 231 2.83e-14 69.7
Msa0114700 MtrunA17_Chr7g0214751 29.353 201 118 6 26 210 43 235 2.02e-13 67.0
Msa0114700 MtrunA17_Chr3g0102841 30.435 161 89 4 58 212 61 204 5.18e-13 65.5
Msa0114700 MtrunA17_Chr8g0335211 34.375 128 67 5 76 201 100 212 9.80e-13 64.7
Msa0114700 MtrunA17_Chr8g0392891 33.043 115 67 3 56 166 117 225 1.24e-11 62.4
Msa0114700 MtrunA17_Chr7g0234801 31.783 129 80 2 46 174 5 125 2.25e-11 62.4
Msa0114700 MtrunA17_Chr8g0377771 35.032 157 81 9 58 208 23 164 4.99e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114700 AT4G19830.1 82.667 150 26 0 65 214 77 226 3.18e-90 265
Msa0114700 AT4G26555.2 33.125 160 87 5 52 210 18 158 4.83e-17 75.5
Msa0114700 AT4G26555.1 33.125 160 87 5 52 210 64 204 7.46e-17 76.3
Msa0114700 AT5G13410.1 32.258 155 92 4 61 210 105 251 3.45e-15 72.4
Msa0114700 AT5G48570.1 33.333 150 66 4 65 213 37 153 3.34e-13 68.2
Msa0114700 AT3G10060.1 36.134 119 67 4 60 175 92 204 3.70e-13 66.6
Msa0114700 AT3G60370.1 32.061 131 56 4 84 214 129 226 6.48e-13 66.2
Msa0114700 AT3G60370.2 32.061 131 56 4 84 214 158 255 9.20e-13 65.9
Msa0114700 AT3G25230.2 39.000 100 52 3 76 174 39 130 1.65e-12 66.2
Msa0114700 AT3G25230.1 39.000 100 52 3 76 174 39 130 1.66e-12 66.2
Msa0114700 AT5G05420.1 29.452 146 68 4 70 213 31 143 5.02e-11 58.9
Msa0114700 AT1G18170.1 35.398 113 67 3 56 164 104 214 8.95e-11 60.1

Find 65 sgRNAs with CRISPR-Local

Find 379 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTAATGAAATTTATATTTA+AGG 0.083950 1_3:+32723294 Msa0114700:three_prime_UTR
AATGGTGAAGGTTCGACTTT+AGG 0.241757 1_3:+32723107 Msa0114700:CDS
TTCTCTGAACTCCCCAATTC+TGG 0.241954 1_3:+32718296 Msa0114700:CDS
TTTGTCTTTGTCCTTGGTTC+TGG 0.255718 1_3:+32722240 Msa0114700:CDS
AAAGTTTAAGTATCAATGTT+AGG 0.267247 1_3:+32718058 None:intergenic
TTGGAACTCCTTGTTGGTTC+AGG 0.280949 1_3:+32718332 Msa0114700:CDS
ATGGTGAAGGTTCGACTTTA+GGG 0.294637 1_3:+32723108 Msa0114700:CDS
GGCCTTAACACCACCAGAAT+TGG 0.297767 1_3:-32718309 None:intergenic
TTTATCAATTTGTGAATTGC+AGG 0.338768 1_3:+32723266 Msa0114700:three_prime_UTR
GTTTGTGTTCAGGTAATTCC+TGG 0.339782 1_3:+32722710 Msa0114700:intron
TTCTGGTGGTGTTAAGGCCT+TGG 0.355031 1_3:+32718313 Msa0114700:CDS
ATTCTCATCTTTGTGGTCAT+AGG 0.366810 1_3:-32722202 None:intergenic
GCCTTAACACCACCAGAATT+GGG 0.386314 1_3:-32718308 None:intergenic
CCCCAATTCTGGTGGTGTTA+AGG 0.386678 1_3:+32718307 Msa0114700:CDS
AGAAGGTGAAGGAGAAGAAT+AGG 0.395312 1_3:-32718252 None:intergenic
CTTTGTCCTTGGTTCTGGTA+AGG 0.410071 1_3:+32722245 Msa0114700:CDS
AAAATAAAATACTGTGTCCT+TGG 0.418797 1_3:+32718107 Msa0114700:CDS
GGTCTTCTTGTTATGTTACA+TGG 0.420319 1_3:-32718173 None:intergenic
GATCACCATTCTCATCTTTG+TGG 0.422175 1_3:-32722209 None:intergenic
CTCACTGCCACATCAATTCC+AGG 0.424536 1_3:-32722728 None:intergenic
AAGGCCTTGGAACTCCTTGT+TGG 0.425790 1_3:+32718326 Msa0114700:CDS
AGTTCAGAGAAATCTGCTAT+TGG 0.443056 1_3:-32718284 None:intergenic
ATATTTGATATTGAACTAGT+TGG 0.443564 1_3:+32723137 Msa0114700:CDS
AGGACAAAGACAAAAGGATT+AGG 0.454496 1_3:-32722231 None:intergenic
GAGATTAGAGACAGAGATAA+GGG 0.454626 1_3:-32718194 None:intergenic
AAGGTTGAGATTCATTACTA+TGG 0.463418 1_3:+32722141 Msa0114700:intron
GAAGAATAGGAAGGTGGAAG+AGG 0.466133 1_3:-32718239 None:intergenic
AAGTTTAAGTATCAATGTTA+GGG 0.469362 1_3:+32718059 None:intergenic
ATTCTTACATTAGGCTGGAT+AGG 0.471169 1_3:-32722824 None:intergenic
AAAGGATTCTTACATTAGGC+TGG 0.472019 1_3:-32722829 None:intergenic
AATCCGACTCGACTTGCAAA+TGG 0.488064 1_3:+32723089 Msa0114700:CDS
GTCATCATACCTCCCTCACT+TGG 0.496708 1_3:+32722779 Msa0114700:CDS
AAAAGTTCTTTGACAGGCAG+AGG 0.497439 1_3:+32723048 Msa0114700:intron
ATTCACAAATTGATAAATGC+TGG 0.499046 1_3:-32723260 None:intergenic
GGAGATTAGAGACAGAGATA+AGG 0.501803 1_3:-32718195 None:intergenic
AAGTGAGAAGATTAAAGCAG+TGG 0.511771 1_3:-32718216 None:intergenic
AAATCGAGCAATATACTACC+TGG 0.512956 1_3:-32723320 None:intergenic
GAACCAAGGACAAAGACAAA+AGG 0.544303 1_3:-32722237 None:intergenic
TCAGGTGAAGTTCCTCAAGA+TGG 0.562507 1_3:+32718350 Msa0114700:CDS
TCTGAACTCCCCAATTCTGG+TGG 0.572089 1_3:+32718299 Msa0114700:CDS
TATGACCACAAAGATGAGAA+TGG 0.579877 1_3:+32722204 Msa0114700:CDS
GAAGGAGAAGAATAGGAAGG+TGG 0.580002 1_3:-32718245 None:intergenic
GGTAGACTTGCAGCAAAACA+AGG 0.581972 1_3:+32722162 Msa0114700:CDS
GGTGAAGGAGAAGAATAGGA+AGG 0.585572 1_3:-32718248 None:intergenic
ATATTGAACTAGTTGGCTTG+AGG 0.585586 1_3:+32723144 Msa0114700:CDS
ACACACGTGTTGCACTTCCA+AGG 0.590396 1_3:-32718124 None:intergenic
TCACCATTTGCAAGTCGAGT+CGG 0.591167 1_3:-32723092 None:intergenic
ACTCGACTTGCAAATGGTGA+AGG 0.607106 1_3:+32723095 Msa0114700:CDS
GACTTGCAGCAAAACAAGGA+TGG 0.607232 1_3:+32722166 Msa0114700:CDS
TCATCATACCTCCCTCACTT+GGG 0.612306 1_3:+32722780 Msa0114700:CDS
TATACCTGGTCTCCATCTTG+AGG 0.616605 1_3:-32718362 None:intergenic
TTCTGATACCCAAGTGAGGG+AGG 0.616633 1_3:-32722788 None:intergenic
GGTAATTCCTGGAATTGATG+TGG 0.617016 1_3:+32722721 Msa0114700:intron
TGAACCAACAAGGAGTTCCA+AGG 0.619826 1_3:-32718330 None:intergenic
CCTTAACACCACCAGAATTG+GGG 0.629737 1_3:-32718307 None:intergenic
GCAGTGAGATCAATGAAAGT+AGG 0.636994 1_3:+32722743 Msa0114700:CDS
AATCGAGCAATATACTACCT+GGG 0.638861 1_3:-32723319 None:intergenic
AATTTATATTTAAGGAACCC+AGG 0.642409 1_3:+32723302 Msa0114700:three_prime_UTR
GTGAGATCAATGAAAGTAGG+TGG 0.643044 1_3:+32722746 Msa0114700:CDS
TGGGTATCAGAACACATCAC+AGG 0.647520 1_3:+32722799 Msa0114700:CDS
GAACTTCACCTGAACCAACA+AGG 0.650571 1_3:-32718340 None:intergenic
AGTTCCTCAAGATGGAGACC+AGG 0.651081 1_3:+32718358 Msa0114700:CDS
AGCTTACCTTACCAGAACCA+AGG 0.667313 1_3:-32722251 None:intergenic
GTGTTCTGATACCCAAGTGA+GGG 0.691969 1_3:-32722791 None:intergenic
TGTGTTCTGATACCCAAGTG+AGG 0.735364 1_3:-32722792 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAATTATTGTTTTATCT+TGG - chr1_3:32722033-32722052 None:intergenic 10.0%
!! AAGATAAAACAATAATTTAA+TGG + chr1_3:32722032-32722051 Msa0114700:intron 10.0%
!! TTACATTAGCATTAATTTAA+AGG - chr1_3:32718395-32718414 None:intergenic 15.0%
!!! AATGAATTAAAATTGGTAAT+TGG - chr1_3:32719112-32719131 None:intergenic 15.0%
!!! ACAATTTTTTTAGGAATTTT+AGG - chr1_3:32719153-32719172 None:intergenic 15.0%
!!! TTCCTAAAAAAATTGTATTT+TGG + chr1_3:32719157-32719176 Msa0114700:intron 15.0%
!! AATAGAAAAGAAAATACAAT+GGG - chr1_3:32721483-32721502 None:intergenic 15.0%
!! AAATAGAAAAGAAAATACAA+TGG - chr1_3:32721484-32721503 None:intergenic 15.0%
!!! TTTTATTTTAGTTGAATTGA+AGG - chr1_3:32721729-32721748 None:intergenic 15.0%
!!! AAAACAATAATTTAATGGAT+AGG + chr1_3:32722037-32722056 Msa0114700:intron 15.0%
!! TATACATTATCTAAATTGAT+AGG + chr1_3:32722905-32722924 Msa0114700:intron 15.0%
!!! AACCATATATTCTAAAATGA+TGG - chr1_3:32718434-32718453 None:intergenic 20.0%
!! AAAACAAAACATGTTTATCA+AGG - chr1_3:32718462-32718481 None:intergenic 20.0%
!!! TAATTGTTATACCCTAATTT+TGG + chr1_3:32718528-32718547 Msa0114700:intron 20.0%
!!! AATTGTTATACCCTAATTTT+GGG + chr1_3:32718529-32718548 Msa0114700:intron 20.0%
!! ACTTATTCAAACTATTTGAA+AGG - chr1_3:32718734-32718753 None:intergenic 20.0%
!! AACGATTAAAATTGACAAAA+CGG - chr1_3:32719072-32719091 None:intergenic 20.0%
!!! GACCAAAATACAATTTTTTT+AGG - chr1_3:32719162-32719181 None:intergenic 20.0%
!!! AATAAGTGCTGAAAAATATA+TGG + chr1_3:32720417-32720436 Msa0114700:intron 20.0%
!! AGACTCACAAAAATTTAAAA+GGG - chr1_3:32720504-32720523 None:intergenic 20.0%
!! AAGACTCACAAAAATTTAAA+AGG - chr1_3:32720505-32720524 None:intergenic 20.0%
!!! TCATTTTTTCCTATAAAACT+TGG + chr1_3:32720622-32720641 Msa0114700:intron 20.0%
!! AAAATTTCTCTAATATCATG+AGG + chr1_3:32720903-32720922 Msa0114700:intron 20.0%
!! AATTAACCAAAAGTGATAAA+GGG - chr1_3:32720977-32720996 None:intergenic 20.0%
!! AAATTAACCAAAAGTGATAA+AGG - chr1_3:32720978-32720997 None:intergenic 20.0%
!! AAAATATTACAAGAATTCCT+AGG - chr1_3:32721186-32721205 None:intergenic 20.0%
!!! GTTGATTTTAAGTTTGAAAA+TGG - chr1_3:32721624-32721643 None:intergenic 20.0%
!!! AAAAATGTTTTTGCTTTTGT+TGG - chr1_3:32721646-32721665 None:intergenic 20.0%
!!! ACAAAAGCAAAAACATTTTT+TGG + chr1_3:32721646-32721665 Msa0114700:intron 20.0%
!!! GTGATATCTTATTTTTTCTT+GGG - chr1_3:32721966-32721985 None:intergenic 20.0%
!! AAGAAAAAATAAGATATCAC+CGG + chr1_3:32721966-32721985 Msa0114700:intron 20.0%
!!! TATTGTTTTATCTTGGTTTT+CGG - chr1_3:32722026-32722045 None:intergenic 20.0%
!!! AATAATTTAATGGATAGGTA+AGG + chr1_3:32722042-32722061 Msa0114700:intron 20.0%
!! TTGATTATAACCAGTAAATT+TGG + chr1_3:32722273-32722292 Msa0114700:intron 20.0%
!!! CAAACTTATTTTGATCATTT+GGG - chr1_3:32722440-32722459 None:intergenic 20.0%
!!! ACAAACTTATTTTGATCATT+TGG - chr1_3:32722441-32722460 None:intergenic 20.0%
!!! ACATATATATTCTCTAGTTT+TGG + chr1_3:32722958-32722977 Msa0114700:intron 20.0%
!! AAAAAAAAAAGTTCTTTGAC+AGG + chr1_3:32723042-32723061 Msa0114700:intron 20.0%
!! ATATTTGATATTGAACTAGT+TGG + chr1_3:32723137-32723156 Msa0114700:CDS 20.0%
! AAAATAAAATACTGTGTCCT+TGG + chr1_3:32718107-32718126 Msa0114700:CDS 25.0%
!!! TGCCATCATTTTAGAATATA+TGG + chr1_3:32718429-32718448 Msa0114700:intron 25.0%
!!! ATTTTTAGGTCCCAAAATTA+GGG - chr1_3:32718542-32718561 None:intergenic 25.0%
!!! TATTTTTAGGTCCCAAAATT+AGG - chr1_3:32718543-32718562 None:intergenic 25.0%
!!! AGAATTGGACTAGTATTTTT+AGG - chr1_3:32718556-32718575 None:intergenic 25.0%
! AAAATGCAAGAAAGAAGAAT+TGG - chr1_3:32718571-32718590 None:intergenic 25.0%
!!! TTCAAATGCAAATTTTGGAA+TGG - chr1_3:32718782-32718801 None:intergenic 25.0%
!! ATGACTTCAAATGCAAATTT+TGG - chr1_3:32718787-32718806 None:intergenic 25.0%
! TCATATGCAATTGGAAAAAA+TGG - chr1_3:32718941-32718960 None:intergenic 25.0%
! AAAAATGACTCATATGCAAT+TGG - chr1_3:32718950-32718969 None:intergenic 25.0%
!!! TACTTTAAAGTACCTCATTT+AGG + chr1_3:32719028-32719047 Msa0114700:intron 25.0%
!! TTATTGTTTGCTGAAAATAG+TGG + chr1_3:32719901-32719920 Msa0114700:intron 25.0%
!! AGGTTTTTGTGTTAAAAATG+AGG + chr1_3:32720109-32720128 Msa0114700:intron 25.0%
!! GGTTTTTGTGTTAAAAATGA+GGG + chr1_3:32720110-32720129 Msa0114700:intron 25.0%
! ACAAGAAAAACAATGGAAAA+TGG - chr1_3:32720363-32720382 None:intergenic 25.0%
! AGAATCAACAAGAAAAACAA+TGG - chr1_3:32720370-32720389 None:intergenic 25.0%
!!! TGTTTTTCTTGTTGATTCTT+TGG + chr1_3:32720371-32720390 Msa0114700:intron 25.0%
!! AAAATATTTTGCATCCTTGT+TGG + chr1_3:32720440-32720459 Msa0114700:intron 25.0%
!!! AAAATTGCACCAAGTTTTAT+AGG - chr1_3:32720634-32720653 None:intergenic 25.0%
! TTTAGCATATAATAGTGACT+TGG + chr1_3:32720675-32720694 Msa0114700:intron 25.0%
!!! ATGCTTTTTTTTAGGTGAAT+TGG + chr1_3:32720701-32720720 Msa0114700:intron 25.0%
! TGTCAAATAAAGTGCATAAA+AGG + chr1_3:32720806-32720825 Msa0114700:intron 25.0%
! CTAAAAAATTCCATGATCTT+TGG + chr1_3:32720830-32720849 Msa0114700:intron 25.0%
! ATTAACTATACCAAAGATCA+TGG - chr1_3:32720843-32720862 None:intergenic 25.0%
!!! CTTTCATGCTTTTAATTTCT+TGG + chr1_3:32721207-32721226 Msa0114700:intron 25.0%
!! TATTCTAGCTATATCTAAAG+TGG - chr1_3:32721326-32721345 None:intergenic 25.0%
! AATATGCATGTTTAGATGTA+TGG + chr1_3:32721342-32721361 Msa0114700:intron 25.0%
! AAGAAAATACAATGGGATAT+TGG - chr1_3:32721476-32721495 None:intergenic 25.0%
! GATTAGTGAATTGCAAAATA+TGG - chr1_3:32721544-32721563 None:intergenic 25.0%
! AAAGTGATATTAAGCCTAAA+AGG - chr1_3:32721794-32721813 None:intergenic 25.0%
!!! ATCTTATTTTTTCTTGGGAA+GGG - chr1_3:32721961-32721980 None:intergenic 25.0%
!!! TATCTTATTTTTTCTTGGGA+AGG - chr1_3:32721962-32721981 None:intergenic 25.0%
!!! GGTGATATCTTATTTTTTCT+TGG - chr1_3:32721967-32721986 None:intergenic 25.0%
!!! ATTGTTTTATCTTGGTTTTC+GGG - chr1_3:32722025-32722044 None:intergenic 25.0%
! AGTAAATGTTGTTACATTGA+AGG + chr1_3:32722122-32722141 Msa0114700:intron 25.0%
! TATAACCAGTAAATTTGGTT+TGG + chr1_3:32722278-32722297 Msa0114700:intron 25.0%
! AAAAATGTCAGACTTGTATA+TGG + chr1_3:32722593-32722612 Msa0114700:intron 25.0%
! CATAAAAGGATTCTTACATT+AGG - chr1_3:32722836-32722855 None:intergenic 25.0%
! ATGAAATTCTGGATCATAAA+AGG - chr1_3:32722850-32722869 None:intergenic 25.0%
!! AAACACTTTCATTTTCATGA+GGG + chr1_3:32723209-32723228 Msa0114700:three_prime_UTR 25.0%
! ATTCACAAATTGATAAATGC+TGG - chr1_3:32723263-32723282 None:intergenic 25.0%
! TTTATCAATTTGTGAATTGC+AGG + chr1_3:32723266-32723285 Msa0114700:three_prime_UTR 25.0%
! AATTTATATTTAAGGAACCC+AGG + chr1_3:32723302-32723321 Msa0114700:three_prime_UTR 25.0%
! TACATGGATATTTTGTGTGA+GGG - chr1_3:32718160-32718179 None:intergenic 30.0%
! TTACATGGATATTTTGTGTG+AGG - chr1_3:32718161-32718180 None:intergenic 30.0%
TTAAAGGAGAGAATTATACC+TGG - chr1_3:32718379-32718398 None:intergenic 30.0%
!!! CATGTTTTGTTTTGCTTTGT+TGG + chr1_3:32718469-32718488 Msa0114700:intron 30.0%
! AAGACTCAGAGACAATTTTT+AGG - chr1_3:32718873-32718892 None:intergenic 30.0%
AATTGGAAAACAACGTAAAG+TGG - chr1_3:32719095-32719114 None:intergenic 30.0%
TGATTGTGCAGAAAAATGAT+TGG - chr1_3:32719347-32719366 None:intergenic 30.0%
CATCAAGTTCATCAAGAATT+TGG - chr1_3:32719419-32719438 None:intergenic 30.0%
CAGATCTATGACGAATAAAA+GGG - chr1_3:32719870-32719889 None:intergenic 30.0%
TCCTCATAATATGAACAGAT+CGG - chr1_3:32720055-32720074 None:intergenic 30.0%
ATCTGTTCATATTATGAGGA+GGG + chr1_3:32720055-32720074 Msa0114700:intron 30.0%
TAAAAATGAGGGAAAAAACC+AGG + chr1_3:32720121-32720140 Msa0114700:intron 30.0%
! GAAATTTTCGCAAGAAGTTT+TGG - chr1_3:32720337-32720356 None:intergenic 30.0%
! TTTTCAGCACTTATTATGCA+AGG - chr1_3:32720412-32720431 None:intergenic 30.0%
GAAATCGTATCTTACAAGAT+AGG - chr1_3:32720553-32720572 None:intergenic 30.0%
AAGAAAGTTGCACATAATCT+TGG - chr1_3:32720591-32720610 None:intergenic 30.0%
!!! AAAACTTGGTGCAATTTTGA+AGG + chr1_3:32720636-32720655 Msa0114700:intron 30.0%
!!! AAACTTGGTGCAATTTTGAA+GGG + chr1_3:32720637-32720656 Msa0114700:intron 30.0%
!!! CTTGGAGTATGCTTTTTTTT+AGG + chr1_3:32720693-32720712 Msa0114700:intron 30.0%
CAAGTACATACAAAATCAAG+AGG - chr1_3:32720727-32720746 None:intergenic 30.0%
!!! TTTTGTATGTACTTGCTGTT+TGG + chr1_3:32720732-32720751 Msa0114700:intron 30.0%
!! TTTGGTTTGGTTTCTAATCA+TGG + chr1_3:32720750-32720769 Msa0114700:intron 30.0%
!! TAGAGAAATTTTGAGTGACT+TGG - chr1_3:32720895-32720914 None:intergenic 30.0%
CTCTAATATCATGAGGATTT+AGG + chr1_3:32720910-32720929 Msa0114700:intron 30.0%
!! CTCTAGAATTGTGTTAGAAT+TGG + chr1_3:32720945-32720964 Msa0114700:intron 30.0%
GGATAGAAACAACATACTAA+AGG - chr1_3:32721042-32721061 None:intergenic 30.0%
! AGGCTTTTACATTCTTAACT+TGG - chr1_3:32721166-32721185 None:intergenic 30.0%
AGTTAAGAATGTAAAAGCCT+AGG + chr1_3:32721166-32721185 Msa0114700:intron 30.0%
!!! CTTTTAATTTCTTGGCAAAG+AGG + chr1_3:32721215-32721234 Msa0114700:intron 30.0%
GTATGTTTAGATGAATGACT+AGG + chr1_3:32721373-32721392 Msa0114700:intron 30.0%
TGAAGTTGTTCACATTTGTT+TGG - chr1_3:32721423-32721442 None:intergenic 30.0%
! AACCTTTTCCAAATAAACCT+TGG + chr1_3:32721447-32721466 Msa0114700:intron 30.0%
! ACCTTTTCCAAATAAACCTT+GGG + chr1_3:32721448-32721467 Msa0114700:intron 30.0%
GAGTTTGAAAGAATAGAAAG+AGG - chr1_3:32721602-32721621 None:intergenic 30.0%
!!! CATTTTTTGGAAGAGAACTA+CGG + chr1_3:32721659-32721678 Msa0114700:intron 30.0%
ATTCTAAGTGAAGAATTGGA+GGG - chr1_3:32721770-32721789 None:intergenic 30.0%
TATTCTAAGTGAAGAATTGG+AGG - chr1_3:32721771-32721790 None:intergenic 30.0%
AGGTATTCTAAGTGAAGAAT+TGG - chr1_3:32721774-32721793 None:intergenic 30.0%
! CTTCACTTAGAATACCTTTT+AGG + chr1_3:32721777-32721796 Msa0114700:intron 30.0%
AAATTAAAGACGGTTCCTAT+AGG + chr1_3:32721848-32721867 Msa0114700:intron 30.0%
TAACGACTATAGTATCCTAT+AGG - chr1_3:32721866-32721885 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+TGG + chr1_3:32721866-32721885 Msa0114700:intron 30.0%
TAGGATACTATAGTCGTTAT+GGG + chr1_3:32721867-32721886 Msa0114700:intron 30.0%
!! TAAGATATCACCGGTTTAAA+AGG + chr1_3:32721975-32721994 Msa0114700:intron 30.0%
! TACGTTTGATCCTTTTAAAC+CGG - chr1_3:32721988-32722007 None:intergenic 30.0%
AAGGTTGAGATTCATTACTA+TGG + chr1_3:32722141-32722160 Msa0114700:intron 30.0%
AAACACCAAACCAAATTTAC+TGG - chr1_3:32722286-32722305 None:intergenic 30.0%
ACTTGTATATGGATCTTCTT+TGG + chr1_3:32722604-32722623 Msa0114700:intron 30.0%
CTTGTATATGGATCTTCTTT+GGG + chr1_3:32722605-32722624 Msa0114700:intron 30.0%
AGTATGTGACATGATGATAA+AGG - chr1_3:32722659-32722678 None:intergenic 30.0%
AGAATGAAATGTTTGTGTTC+AGG + chr1_3:32722700-32722719 Msa0114700:intron 30.0%
CAAACGTAACTATGAAATTC+TGG - chr1_3:32722861-32722880 None:intergenic 30.0%
! TTGTATGTTTTCTAGATAGC+TGG - chr1_3:32723191-32723210 None:intergenic 30.0%
! CAAACACTTTCATTTTCATG+AGG + chr1_3:32723208-32723227 Msa0114700:three_prime_UTR 30.0%
! AACACTTTCATTTTCATGAG+GGG + chr1_3:32723210-32723229 Msa0114700:three_prime_UTR 30.0%
! GGTCTTCTTGTTATGTTACA+TGG - chr1_3:32718176-32718195 None:intergenic 35.0%
GAGATTAGAGACAGAGATAA+GGG - chr1_3:32718197-32718216 None:intergenic 35.0%
AAGTGAGAAGATTAAAGCAG+TGG - chr1_3:32718219-32718238 None:intergenic 35.0%
AGTTCAGAGAAATCTGCTAT+TGG - chr1_3:32718287-32718306 None:intergenic 35.0%
GGTAGAGTATGAGAATTTGT+AGG + chr1_3:32718490-32718509 Msa0114700:intron 35.0%
AGTTGCAGAATTCACATAGA+AGG + chr1_3:32718649-32718668 Msa0114700:intron 35.0%
GTTGCAGAATTCACATAGAA+GGG + chr1_3:32718650-32718669 Msa0114700:intron 35.0%
GGTCATTTCACACGAAATTT+CGG + chr1_3:32718997-32719016 Msa0114700:intron 35.0%
GTAACAAACTCTTGGACAAA+TGG - chr1_3:32719234-32719253 None:intergenic 35.0%
!! TTGTCCAAGAGTTTGTTACA+AGG + chr1_3:32719235-32719254 Msa0114700:intron 35.0%
AAATGCAGAGAGAGAAAAAG+TGG - chr1_3:32719383-32719402 None:intergenic 35.0%
! ATTCTGTTAGGGTTTGTTCT+TGG - chr1_3:32719459-32719478 None:intergenic 35.0%
!!! GGTTTTGGAGAATTCTGTTA+GGG - chr1_3:32719470-32719489 None:intergenic 35.0%
!!! TGGTTTTGGAGAATTCTGTT+AGG - chr1_3:32719471-32719490 None:intergenic 35.0%
! TTGAGAATTTGTGGTGGTTT+TGG - chr1_3:32719485-32719504 None:intergenic 35.0%
CTTCGAATTCGTATTGTTTG+TGG - chr1_3:32719566-32719585 None:intergenic 35.0%
GATTTGCGAATTCTTTGGTT+CGG - chr1_3:32719621-32719640 None:intergenic 35.0%
AGATTCGAAACGGTGAAAAA+GGG + chr1_3:32719740-32719759 Msa0114700:intron 35.0%
CTATGACGAATAAAAGGGAA+CGG - chr1_3:32719865-32719884 None:intergenic 35.0%
CCAGATCTATGACGAATAAA+AGG - chr1_3:32719871-32719890 None:intergenic 35.0%
! CCTTTTATTCGTCATAGATC+TGG + chr1_3:32719868-32719887 Msa0114700:intron 35.0%
AAAAAAAAAAAGCTCCGACG+CGG + chr1_3:32719970-32719989 Msa0114700:intron 35.0%
TCCGATCTGTTCATATTATG+AGG + chr1_3:32720051-32720070 Msa0114700:intron 35.0%
GATCTGTTCATATTATGAGG+AGG + chr1_3:32720054-32720073 Msa0114700:intron 35.0%
!! ATAGTATAAAAGGATTGGCC+TGG - chr1_3:32720142-32720161 None:intergenic 35.0%
! AGGCCAATCCTTTTATACTA+TGG + chr1_3:32720141-32720160 Msa0114700:intron 35.0%
! GGCCAATCCTTTTATACTAT+GGG + chr1_3:32720142-32720161 Msa0114700:intron 35.0%
GACCCATAGTATAAAAGGAT+TGG - chr1_3:32720147-32720166 None:intergenic 35.0%
ATTAACACATTGAGCCAACA+AGG - chr1_3:32720457-32720476 None:intergenic 35.0%
!! GTGCAATTTTGAAGGGAATT+TGG + chr1_3:32720644-32720663 Msa0114700:intron 35.0%
!! TATGTACTTGCTGTTTGGTT+TGG + chr1_3:32720737-32720756 Msa0114700:intron 35.0%
AGGGAAAAATATGAGGATCA+AGG - chr1_3:32720868-32720887 None:intergenic 35.0%
TGGTTCAAGGGAAAAATATG+AGG - chr1_3:32720875-32720894 None:intergenic 35.0%
!!! TTTTGAGTGACTTGGTTCAA+GGG - chr1_3:32720887-32720906 None:intergenic 35.0%
!!! ATTTTGAGTGACTTGGTTCA+AGG - chr1_3:32720888-32720907 None:intergenic 35.0%
!! TCTAACACAATTCTAGAGCA+AGG - chr1_3:32720943-32720962 None:intergenic 35.0%
! CAAGTTCCCTTTATCACTTT+TGG + chr1_3:32720968-32720987 Msa0114700:intron 35.0%
! AACATACTAAAGGCATAGCA+AGG - chr1_3:32721032-32721051 None:intergenic 35.0%
AAGGAGTTAGTAGCACAAAT+GGG - chr1_3:32721063-32721082 None:intergenic 35.0%
AAAGGAGTTAGTAGCACAAA+TGG - chr1_3:32721064-32721083 None:intergenic 35.0%
GATAGGAGACATGAAACAAA+AGG - chr1_3:32721082-32721101 None:intergenic 35.0%
GTGAATATGCAAGATGCTAT+GGG - chr1_3:32721104-32721123 None:intergenic 35.0%
AGTGAATATGCAAGATGCTA+TGG - chr1_3:32721105-32721124 None:intergenic 35.0%
CATACCCTAGATACATTCTA+TGG - chr1_3:32721241-32721260 None:intergenic 35.0%
! GTATCTAGGGTATGATGTAA+AGG + chr1_3:32721247-32721266 Msa0114700:intron 35.0%
GCATGTTTAGATGTATGGTT+AGG + chr1_3:32721347-32721366 Msa0114700:intron 35.0%
TCCCAAGGTTTATTTGGAAA+AGG - chr1_3:32721452-32721471 None:intergenic 35.0%
ATTGGATCCCAAGGTTTATT+TGG - chr1_3:32721458-32721477 None:intergenic 35.0%
ATTCTCATCTTTGTGGTCAT+AGG - chr1_3:32722205-32722224 None:intergenic 35.0%
TATGACCACAAAGATGAGAA+TGG + chr1_3:32722204-32722223 Msa0114700:CDS 35.0%
AGGACAAAGACAAAAGGATT+AGG - chr1_3:32722234-32722253 None:intergenic 35.0%
! AATCCTTTTGTCTTTGTCCT+TGG + chr1_3:32722234-32722253 Msa0114700:CDS 35.0%
! CTTAATTGCTTCTTGAGTTG+TGG - chr1_3:32722514-32722533 None:intergenic 35.0%
GAAGCAATTAAGCATCAATG+TGG + chr1_3:32722522-32722541 Msa0114700:intron 35.0%
! TGACATGATGATAAAGGCAT+CGG - chr1_3:32722653-32722672 None:intergenic 35.0%
ATTCTTACATTAGGCTGGAT+AGG - chr1_3:32722827-32722846 None:intergenic 35.0%
AAAGGATTCTTACATTAGGC+TGG - chr1_3:32722832-32722851 None:intergenic 35.0%
AAGTCGAGTCGGATTAAAAA+TGG - chr1_3:32723084-32723103 None:intergenic 35.0%
!! ATATTGAACTAGTTGGCTTG+AGG + chr1_3:32723144-32723163 Msa0114700:CDS 35.0%
AATCGAGCAATATACTACCT+GGG - chr1_3:32723322-32723341 None:intergenic 35.0%
AAATCGAGCAATATACTACC+TGG - chr1_3:32723323-32723342 None:intergenic 35.0%
! ATATTTTGTGTGAGGGAGAG+TGG - chr1_3:32718153-32718172 None:intergenic 40.0%
GGAGATTAGAGACAGAGATA+AGG - chr1_3:32718198-32718217 None:intergenic 40.0%
AGAAGGTGAAGGAGAAGAAT+AGG - chr1_3:32718255-32718274 None:intergenic 40.0%
!!! GCTATTGGACGTTTTGAAGA+AGG - chr1_3:32718272-32718291 None:intergenic 40.0%
AAATGACCAAAATGCCCCTA+GGG - chr1_3:32718826-32718845 None:intergenic 40.0%
AAGTACCTCATTTAGGCCAT+TGG + chr1_3:32719035-32719054 Msa0114700:intron 40.0%
!! AACGGACTAAAACGAACCAA+TGG - chr1_3:32719054-32719073 None:intergenic 40.0%
! TCCTTTTTGTCCAAGTCATC+AGG + chr1_3:32719180-32719199 Msa0114700:intron 40.0%
! ACCTGATGACTTGGACAAAA+AGG - chr1_3:32719184-32719203 None:intergenic 40.0%
TGGACCTTGTAACAAACTCT+TGG - chr1_3:32719242-32719261 None:intergenic 40.0%
TAGCTGATGATTGTAACTGC+TGG - chr1_3:32719291-32719310 None:intergenic 40.0%
AAAAGCCACATCACAGTCAA+AGG + chr1_3:32719312-32719331 Msa0114700:intron 40.0%
TTTGACCTTTGACTGTGATG+TGG - chr1_3:32719320-32719339 None:intergenic 40.0%
!!! GTGGTTTTGAGAATTTGTGG+TGG - chr1_3:32719491-32719510 None:intergenic 40.0%
!!! ACGGTGGTTTTGAGAATTTG+TGG - chr1_3:32719494-32719513 None:intergenic 40.0%
ACCACCGTAACTAACTGTTA+CGG + chr1_3:32719506-32719525 Msa0114700:intron 40.0%
! TATTGTTTGTGGCGGTTTTG+TGG - chr1_3:32719555-32719574 None:intergenic 40.0%
CGAATTCGTATTGTTTGTGG+CGG - chr1_3:32719563-32719582 None:intergenic 40.0%
! CGATGGATTTGCGAATTCTT+TGG - chr1_3:32719626-32719645 None:intergenic 40.0%
! TCTTGATTCAGCTTTGACGA+TGG - chr1_3:32719643-32719662 None:intergenic 40.0%
GTTGTTTGAGAGTCTGGATT+CGG - chr1_3:32719705-32719724 None:intergenic 40.0%
TGAAACGTTGTTTGAGAGTC+TGG - chr1_3:32719711-32719730 None:intergenic 40.0%
AAACGCGAACAGATTCGAAA+CGG + chr1_3:32719730-32719749 Msa0114700:intron 40.0%
CAGATTCGAAACGGTGAAAA+AGG + chr1_3:32719739-32719758 Msa0114700:intron 40.0%
! CTTAACGTTTTGCTTCCGTT+TGG - chr1_3:32719798-32719817 None:intergenic 40.0%
CAAACGGAAGCAAAACGTTA+AGG + chr1_3:32719796-32719815 Msa0114700:intron 40.0%
GGAAGCAAAACGTTAAGGAA+AGG + chr1_3:32719801-32719820 Msa0114700:intron 40.0%
GTTAAGGAAAGGAACGTAGA+AGG + chr1_3:32719812-32719831 Msa0114700:intron 40.0%
! AGGTTGATTCAAAGCTCAAG+AGG + chr1_3:32719832-32719851 Msa0114700:intron 40.0%
ATAGTGGTAGATCCGAACAA+AGG + chr1_3:32719917-32719936 Msa0114700:intron 40.0%
! CTCACTAGTTCTTTAGAGAG+AGG + chr1_3:32720089-32720108 Msa0114700:intron 40.0%
CGGTTGACCCATAGTATAAA+AGG - chr1_3:32720152-32720171 None:intergenic 40.0%
! GTGCAACTTTCTTGTGCTTT+TGG + chr1_3:32720598-32720617 Msa0114700:intron 40.0%
TATGCAAGATGCTATGGGAT+AGG - chr1_3:32721099-32721118 None:intergenic 40.0%
AGAGGCCATAGAATGTATCT+AGG + chr1_3:32721233-32721252 Msa0114700:intron 40.0%
GAGGCCATAGAATGTATCTA+GGG + chr1_3:32721234-32721253 Msa0114700:intron 40.0%
GGGTATGATGTAAAGGACAA+TGG + chr1_3:32721254-32721273 Msa0114700:intron 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG + chr1_3:32721662-32721681 Msa0114700:intron 40.0%
! GGTGGATTTGATCCCTTAAA+CGG + chr1_3:32721680-32721699 Msa0114700:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG + chr1_3:32721681-32721700 Msa0114700:intron 40.0%
GATCACCATTCTCATCTTTG+TGG - chr1_3:32722212-32722231 None:intergenic 40.0%
GAACCAAGGACAAAGACAAA+AGG - chr1_3:32722240-32722259 None:intergenic 40.0%
TTTGTCTTTGTCCTTGGTTC+TGG + chr1_3:32722240-32722259 Msa0114700:CDS 40.0%
GTTTGTGTTCAGGTAATTCC+TGG + chr1_3:32722710-32722729 Msa0114700:intron 40.0%
GGTAATTCCTGGAATTGATG+TGG + chr1_3:32722721-32722740 Msa0114700:intron 40.0%
GCAGTGAGATCAATGAAAGT+AGG + chr1_3:32722743-32722762 Msa0114700:CDS 40.0%
GTGAGATCAATGAAAGTAGG+TGG + chr1_3:32722746-32722765 Msa0114700:CDS 40.0%
AAAAGTTCTTTGACAGGCAG+AGG + chr1_3:32723048-32723067 Msa0114700:intron 40.0%
AATGGTGAAGGTTCGACTTT+AGG + chr1_3:32723107-32723126 Msa0114700:CDS 40.0%
ATGGTGAAGGTTCGACTTTA+GGG + chr1_3:32723108-32723127 Msa0114700:CDS 40.0%
! ACTTTCATTTTCATGAGGGG+TGG + chr1_3:32723213-32723232 Msa0114700:three_prime_UTR 40.0%
GAAGAATAGGAAGGTGGAAG+AGG - chr1_3:32718242-32718261 None:intergenic 45.0%
GAAGGAGAAGAATAGGAAGG+TGG - chr1_3:32718248-32718267 None:intergenic 45.0%
GGTGAAGGAGAAGAATAGGA+AGG - chr1_3:32718251-32718270 None:intergenic 45.0%
!!! GGACGTTTTGAAGAAGGTGA+AGG - chr1_3:32718266-32718285 None:intergenic 45.0%
TTCTCTGAACTCCCCAATTC+TGG + chr1_3:32718296-32718315 Msa0114700:CDS 45.0%
CCTTAACACCACCAGAATTG+GGG - chr1_3:32718310-32718329 None:intergenic 45.0%
GCCTTAACACCACCAGAATT+GGG - chr1_3:32718311-32718330 None:intergenic 45.0%
TGAACCAACAAGGAGTTCCA+AGG - chr1_3:32718333-32718352 None:intergenic 45.0%
!! TTGGAACTCCTTGTTGGTTC+AGG + chr1_3:32718332-32718351 Msa0114700:CDS 45.0%
GAACTTCACCTGAACCAACA+AGG - chr1_3:32718343-32718362 None:intergenic 45.0%
TCAGGTGAAGTTCCTCAAGA+TGG + chr1_3:32718350-32718369 Msa0114700:CDS 45.0%
TATACCTGGTCTCCATCTTG+AGG - chr1_3:32718365-32718384 None:intergenic 45.0%
! TTTGAGTCAGTTTTGCCCCT+AGG + chr1_3:32718807-32718826 Msa0114700:intron 45.0%
! TTGAGTCAGTTTTGCCCCTA+GGG + chr1_3:32718808-32718827 Msa0114700:intron 45.0%
AATGACCAAAATGCCCCTAG+GGG - chr1_3:32718825-32718844 None:intergenic 45.0%
GAAATGACCAAAATGCCCCT+AGG - chr1_3:32718827-32718846 None:intergenic 45.0%
!! TTTTAGTCGTTTTAGCCCCC+AGG + chr1_3:32718966-32718985 Msa0114700:intron 45.0%
!! TTTAGTCGTTTTAGCCCCCA+GGG + chr1_3:32718967-32718986 Msa0114700:intron 45.0%
AAATGACCAAAATGCCCCTG+GGG - chr1_3:32718985-32719004 None:intergenic 45.0%
GAAATGACCAAAATGCCCCT+GGG - chr1_3:32718827-32718846 None:intergenic 45.0%
TGAAATGACCAAAATGCCCC+TGG - chr1_3:32718828-32718847 None:intergenic 45.0%
ACGAACCAATGGCCTAAATG+AGG - chr1_3:32719043-32719062 None:intergenic 45.0%
CTGGCCGTAACAGTTAGTTA+CGG - chr1_3:32719513-32719532 None:intergenic 45.0%
TCAAAGCTGAATCAAGAGCG+TGG + chr1_3:32719646-32719665 Msa0114700:intron 45.0%
! CTTCAGTGGATTTGATTCGC+TGG - chr1_3:32719682-32719701 None:intergenic 45.0%
CGAGCAATCAAGAGCTGTAA+CGG + chr1_3:32719770-32719789 Msa0114700:intron 45.0%
! AGAGCTGTAACGGAACCAAA+CGG + chr1_3:32719780-32719799 Msa0114700:intron 45.0%
TCCGAACAAAGGAGAAGAAG+AGG + chr1_3:32719928-32719947 Msa0114700:intron 45.0%
CCCTCTTCTTCTCCTTTGTT+CGG - chr1_3:32719932-32719951 None:intergenic 45.0%
CCGAACAAAGGAGAAGAAGA+GGG + chr1_3:32719929-32719948 Msa0114700:intron 45.0%
AAGAAGAAGTGAGTGGAGGT+CGG - chr1_3:32720030-32720049 None:intergenic 45.0%
ATCGGAGAAGAAGAAGTGAG+TGG - chr1_3:32720037-32720056 None:intergenic 45.0%
ATACTATGGGTCAACCGAAC+AGG + chr1_3:32720155-32720174 Msa0114700:intron 45.0%
!! TAGGAAGCACTATGCAGTGT+GGG - chr1_3:32720301-32720320 None:intergenic 45.0%
!! AAGAAGTTTTGGCACAGCAG+CGG - chr1_3:32720326-32720345 None:intergenic 45.0%
CAATGGGATATTGGATCCCA+AGG - chr1_3:32721467-32721486 None:intergenic 45.0%
AGAATAGAAAGAGGCCTCGA+GGG - chr1_3:32721593-32721612 None:intergenic 45.0%
AAGAATAGAAAGAGGCCTCG+AGG - chr1_3:32721594-32721613 None:intergenic 45.0%
TTGCCTACGTACCCGTTTAA+GGG - chr1_3:32721695-32721714 None:intergenic 45.0%
! TGGAGGGAGGAGAATGTTTT+TGG - chr1_3:32721754-32721773 None:intergenic 45.0%
CTAAGTGAAGAATTGGAGGG+AGG - chr1_3:32721767-32721786 None:intergenic 45.0%
GCGCGCGTAGAAATTAAAGA+CGG + chr1_3:32721838-32721857 Msa0114700:intron 45.0%
TTTCGCTACGGGAATGTGTT+AGG - chr1_3:32721895-32721914 None:intergenic 45.0%
AGCAAAACCCTTGAGAATCG+AGG - chr1_3:32721930-32721949 None:intergenic 45.0%
GGTAGACTTGCAGCAAAACA+AGG + chr1_3:32722162-32722181 Msa0114700:CDS 45.0%
GACTTGCAGCAAAACAAGGA+TGG + chr1_3:32722166-32722185 Msa0114700:CDS 45.0%
!! CTTTGTCCTTGGTTCTGGTA+AGG + chr1_3:32722245-32722264 Msa0114700:CDS 45.0%
AGCTTACCTTACCAGAACCA+AGG - chr1_3:32722254-32722273 None:intergenic 45.0%
TCATCATACCTCCCTCACTT+GGG + chr1_3:32722780-32722799 Msa0114700:CDS 45.0%
GTGTTCTGATACCCAAGTGA+GGG - chr1_3:32722794-32722813 None:intergenic 45.0%
TGTGTTCTGATACCCAAGTG+AGG - chr1_3:32722795-32722814 None:intergenic 45.0%
TGGGTATCAGAACACATCAC+AGG + chr1_3:32722799-32722818 Msa0114700:CDS 45.0%
! AATCCGACTCGACTTGCAAA+TGG + chr1_3:32723089-32723108 Msa0114700:CDS 45.0%
TCACCATTTGCAAGTCGAGT+CGG - chr1_3:32723095-32723114 None:intergenic 45.0%
! ACTCGACTTGCAAATGGTGA+AGG + chr1_3:32723095-32723114 Msa0114700:CDS 45.0%
!! AAATAAAAATGAATTAAAAT+TGG - chr1_3:32719119-32719138 None:intergenic 5.0%
!! ATTAATGAAATTTATATTTA+AGG + chr1_3:32723294-32723313 Msa0114700:three_prime_UTR 5.0%
ACACACGTGTTGCACTTCCA+AGG - chr1_3:32718127-32718146 None:intergenic 50.0%
TCTGAACTCCCCAATTCTGG+TGG + chr1_3:32718299-32718318 Msa0114700:CDS 50.0%
! CCCCAATTCTGGTGGTGTTA+AGG + chr1_3:32718307-32718326 Msa0114700:CDS 50.0%
GGCCTTAACACCACCAGAAT+TGG - chr1_3:32718312-32718331 None:intergenic 50.0%
! TTCTGGTGGTGTTAAGGCCT+TGG + chr1_3:32718313-32718332 Msa0114700:CDS 50.0%
AAGGCCTTGGAACTCCTTGT+TGG + chr1_3:32718326-32718345 Msa0114700:CDS 50.0%
AGTTCCTCAAGATGGAGACC+AGG + chr1_3:32718358-32718377 Msa0114700:CDS 50.0%
! TGAGTCAGTTTTGCCCCTAG+GGG + chr1_3:32718809-32718828 Msa0114700:intron 50.0%
!!! TTTTGCCCCTAGGGGCATTT+TGG + chr1_3:32718817-32718836 Msa0114700:intron 50.0%
!! TTAGTCGTTTTAGCCCCCAG+GGG + chr1_3:32718968-32718987 Msa0114700:intron 50.0%
AATGACCAAAATGCCCCTGG+GGG - chr1_3:32718984-32719003 None:intergenic 50.0%
CACACGAAATTTCGGCAGAG+AGG + chr1_3:32719005-32719024 Msa0114700:intron 50.0%
CGTGTACAGACCTGATGACT+TGG - chr1_3:32719193-32719212 None:intergenic 50.0%
ACCAATAAGCCACTGCCATG+TGG - chr1_3:32719268-32719287 None:intergenic 50.0%
GCCGTAACAGTTAGTTACGG+TGG - chr1_3:32719510-32719529 None:intergenic 50.0%
CAGTTGTGGTGGTTTAGTGC+TGG - chr1_3:32719532-32719551 None:intergenic 50.0%
AAAAAAAAGCTCCGACGCGG+CGG + chr1_3:32719973-32719992 Msa0114700:intron 50.0%
GGAGAAGAAGAAGTGAGTGG+AGG - chr1_3:32720034-32720053 None:intergenic 50.0%
ATCCATGGAGCGAACCTGTT+CGG - chr1_3:32720172-32720191 None:intergenic 50.0%
!! GTAGGAAGCACTATGCAGTG+TGG - chr1_3:32720302-32720321 None:intergenic 50.0%
AGTGGAGTGTGTGCATGTGT+CGG - chr1_3:32721308-32721327 None:intergenic 50.0%
TTCCTAATCTCATGCCCTCG+AGG + chr1_3:32721576-32721595 Msa0114700:intron 50.0%
GATCCCTTAAACGGGTACGT+AGG + chr1_3:32721689-32721708 Msa0114700:intron 50.0%
CTTGCCTACGTACCCGTTTA+AGG - chr1_3:32721696-32721715 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG + chr1_3:32721694-32721713 Msa0114700:intron 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG - chr1_3:32721907-32721926 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG - chr1_3:32721925-32721944 None:intergenic 50.0%
CTCACTGCCACATCAATTCC+AGG - chr1_3:32722731-32722750 None:intergenic 50.0%
GTCATCATACCTCCCTCACT+TGG + chr1_3:32722779-32722798 Msa0114700:CDS 50.0%
TTCTGATACCCAAGTGAGGG+AGG - chr1_3:32722791-32722810 None:intergenic 50.0%
!!! TTTAGCCCCCAGGGGCATTT+TGG + chr1_3:32718976-32718995 Msa0114700:intron 55.0%
TTACAAGGTCCAGCGCCACA+TGG + chr1_3:32719250-32719269 Msa0114700:intron 55.0%
GCCACATGGCAGTGGCTTAT+TGG + chr1_3:32719264-32719283 Msa0114700:intron 55.0%
!! CGGTTTTGTGGCAGTTGTGG+TGG - chr1_3:32719543-32719562 None:intergenic 55.0%
!! TGGCGGTTTTGTGGCAGTTG+TGG - chr1_3:32719546-32719565 None:intergenic 55.0%
GAGTCTGGATTCGGCTTCAG+TGG - chr1_3:32719696-32719715 None:intergenic 55.0%
AAGAAGTGAGTGGAGGTCGG+AGG - chr1_3:32720027-32720046 None:intergenic 55.0%
AACCGAACAGGTTCGCTCCA+TGG + chr1_3:32720167-32720186 Msa0114700:intron 55.0%
GAACAGGTTCGCTCCATGGA+TGG + chr1_3:32720171-32720190 Msa0114700:intron 55.0%
GATCGGGTAGGATCCATCCA+TGG - chr1_3:32720187-32720206 None:intergenic 55.0%
TCCTACCCGATCTAGACCCA+TGG + chr1_3:32720195-32720214 Msa0114700:intron 55.0%
ACCATGGGTCTAGATCGGGT+AGG - chr1_3:32720199-32720218 None:intergenic 55.0%
TCGCACCATGGGTCTAGATC+GGG - chr1_3:32720203-32720222 None:intergenic 55.0%
GTCGCACCATGGGTCTAGAT+CGG - chr1_3:32720204-32720223 None:intergenic 55.0%
GATGCAACCAAGCAAAGCCC+AGG - chr1_3:32720249-32720268 None:intergenic 55.0%
! TTTTGGCACAGCAGCGGTGT+AGG - chr1_3:32720320-32720339 None:intergenic 55.0%
! GCATGTGTCGGTGCTTGTGT+CGG - chr1_3:32721296-32721315 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG - chr1_3:32721906-32721925 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG + chr1_3:32721903-32721922 Msa0114700:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG + chr1_3:32721920-32721939 Msa0114700:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG - chr1_3:32721924-32721943 None:intergenic 55.0%
CAAAGCCCAGGCCCAGTCTA+GGG - chr1_3:32720237-32720256 None:intergenic 60.0%
! GGCCTCGAGGGCATGAGATT+AGG - chr1_3:32721581-32721600 None:intergenic 60.0%
CTCCCGGACCTCGATTCTCA+AGG + chr1_3:32721919-32721938 Msa0114700:intron 60.0%
AAGCCACTGCCATGTGGCGC+TGG - chr1_3:32719262-32719281 None:intergenic 65.0%
TGCAGAGCGGGTCGCACCAT+GGG - chr1_3:32720214-32720233 None:intergenic 65.0%
ACCCGCTCTGCACCCTAGAC+TGG + chr1_3:32720222-32720241 Msa0114700:intron 65.0%
! CCCAGTCTAGGGTGCAGAGC+GGG - chr1_3:32720226-32720245 None:intergenic 65.0%
CCCGCTCTGCACCCTAGACT+GGG + chr1_3:32720223-32720242 Msa0114700:intron 65.0%
! GCCCAGTCTAGGGTGCAGAG+CGG - chr1_3:32720227-32720246 None:intergenic 65.0%
TCTGCACCCTAGACTGGGCC+TGG + chr1_3:32720228-32720247 Msa0114700:intron 65.0%
CTGCACCCTAGACTGGGCCT+GGG + chr1_3:32720229-32720248 Msa0114700:intron 65.0%
GCAAAGCCCAGGCCCAGTCT+AGG - chr1_3:32720238-32720257 None:intergenic 65.0%
GACTGGGCCTGGGCTTTGCT+TGG + chr1_3:32720239-32720258 Msa0114700:intron 65.0%
GGTCCAGCGCCACATGGCAG+TGG + chr1_3:32719256-32719275 Msa0114700:intron 70.0%
!! AGGTCGGAGGTGCTCCGACG+CGG - chr1_3:32720014-32720033 None:intergenic 70.0%
GTGCAGAGCGGGTCGCACCA+TGG - chr1_3:32720215-32720234 None:intergenic 70.0%
!! CGGAGGTGCTCCGACGCGGT+GGG - chr1_3:32720010-32720029 None:intergenic 75.0%
!! TCGGAGGTGCTCCGACGCGG+TGG - chr1_3:32720011-32720030 None:intergenic 75.0%
! GCTCCGACGCGGCGGCGCTA+CGG + chr1_3:32719981-32720000 Msa0114700:intron 80.0%
! GCTACGGCGGCCCACCGCGT+CGG + chr1_3:32719997-32720016 Msa0114700:intron 80.0%
! CCGCCGTAGCGCCGCCGCGT+CGG - chr1_3:32719987-32720006 None:intergenic 85.0%
! CCGACGCGGCGGCGCTACGG+CGG + chr1_3:32719984-32720003 Msa0114700:intron 85.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 32718069 32723345 32718069 ID=Msa0114700;Name=Msa0114700
chr1_3 mRNA 32718069 32723345 32718069 ID=Msa0114700-mRNA-1;Parent=Msa0114700;Name=Msa0114700-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|1|1|0.66|0.75|4|170|215
chr1_3 exon 32718069 32718379 32718069 ID=Msa0114700-mRNA-1:exon:10382;Parent=Msa0114700-mRNA-1
chr1_3 exon 32722144 32722266 32722144 ID=Msa0114700-mRNA-1:exon:10383;Parent=Msa0114700-mRNA-1
chr1_3 exon 32722722 32722838 32722722 ID=Msa0114700-mRNA-1:exon:10384;Parent=Msa0114700-mRNA-1
chr1_3 exon 32723053 32723345 32723053 ID=Msa0114700-mRNA-1:exon:10385;Parent=Msa0114700-mRNA-1
chr1_3 five_prime_UTR 32718069 32718094 32718069 ID=Msa0114700-mRNA-1:five_prime_utr;Parent=Msa0114700-mRNA-1
chr1_3 CDS 32718095 32718379 32718095 ID=Msa0114700-mRNA-1:cds;Parent=Msa0114700-mRNA-1
chr1_3 CDS 32722144 32722266 32722144 ID=Msa0114700-mRNA-1:cds;Parent=Msa0114700-mRNA-1
chr1_3 CDS 32722722 32722838 32722722 ID=Msa0114700-mRNA-1:cds;Parent=Msa0114700-mRNA-1
chr1_3 CDS 32723053 32723175 32723053 ID=Msa0114700-mRNA-1:cds;Parent=Msa0114700-mRNA-1
chr1_3 three_prime_UTR 32723176 32723345 32723176 ID=Msa0114700-mRNA-1:three_prime_utr;Parent=Msa0114700-mRNA-1
Gene Sequence

>Msa0114700

ATGAAGATGAAGAAAATAAAATACTGTGTCCTTGGAAGTGCAACACGTGTGTGTGCCACTCTCCCTCACACAAAATATCCATGTAACATAACAAGAAGACCCTTATCTCTGTCTCTAATCTCCACTGCTTTAATCTTCTCACTTCCTCTTCCACCTTCCTATTCTTCTCCTTCACCTTCTTCAAAACGTCCAATAGCAGATTTCTCTGAACTCCCCAATTCTGGTGGTGTTAAGGCCTTGGAACTCCTTGTTGGTTCAGGTGAAGTTCCTCAAGATGGAGACCAGGTTGAGATTCATTACTATGGTAGACTTGCAGCAAAACAAGGATGGCGTTTTGATTCAACCTATGACCACAAAGATGAGAATGGTGATCCTAATCCTTTTGTCTTTGTCCTTGGTTCTGGTAAGGTAATTCCTGGAATTGATGTGGCAGTGAGATCAATGAAAGTAGGTGGTATTCGTCGAGTCATCATACCTCCCTCACTTGGGTATCAGAACACATCACAGGAACCTATCCAGCCTAATTTCTTTGACAGGCAGAGGCTGTTCACTACCATTTTTAATCCGACTCGACTTGCAAATGGTGAAGGTTCGACTTTAGGGACACTTATATTTGATATTGAACTAGTTGGCTTGAGGCATCAGTGA

Protein sequence

>Msa0114700

MKMKKIKYCVLGSATRVCATLPHTKYPCNITRRPLSLSLISTALIFSLPLPPSYSSPSPSSKRPIADFSELPNSGGVKALELLVGSGEVPQDGDQVEIHYYGRLAAKQGWRFDSTYDHKDENGDPNPFVFVLGSGKVIPGIDVAVRSMKVGGIRRVIIPPSLGYQNTSQEPIQPNFFDRQRLFTTIFNPTRLANGEGSTLGTLIFDIELVGLRHQ*