AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0091470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091470 MtrunA17_Chr1g0212361 95.322 791 9 3 1 787 1 767 0.0 1538
Msa0091470 MtrunA17_Chr8g0374081 30.982 723 447 21 98 781 75 784 3.15e-87 293
Msa0091470 MtrunA17_Chr5g0420581 30.162 431 263 11 330 728 2 426 1.23e-54 194
Msa0091470 MtrunA17_Chr3g0143651 25.478 785 455 26 58 781 7 722 1.18e-53 198
Msa0091470 MtrunA17_Chr1g0157311 35.517 290 166 5 509 781 497 782 1.11e-44 172
Msa0091470 MtrunA17_Chr1g0157291 46.875 160 83 2 509 667 8 166 6.79e-42 150
Msa0091470 MtrunA17_Chr5g0420571 30.502 259 163 5 80 335 76 320 1.34e-30 123
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0091470 AT1G50380.2 73.541 737 168 2 47 783 62 771 0.0 1156
Msa0091470 AT1G50380.1 74.550 723 160 1 61 783 7 705 0.0 1154
Msa0091470 AT1G69020.2 30.196 765 479 15 61 786 40 788 2.55e-108 349
Msa0091470 AT1G69020.1 30.105 764 449 16 61 786 40 756 9.79e-104 336
Msa0091470 AT5G66960.1 28.649 733 454 19 98 781 78 790 1.37e-73 256
Msa0091470 AT1G76140.1 26.227 774 461 23 62 784 78 792 2.21e-52 196
Msa0091470 AT1G76140.2 26.200 771 462 23 62 784 78 789 2.62e-52 196
Msa0091470 AT1G20380.1 24.936 778 488 25 51 784 3 728 5.94e-49 185
Msa0091470 AT1G20380.2 33.793 290 171 5 512 784 281 566 7.91e-43 164

Find 193 sgRNAs with CRISPR-Local

Find 491 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGCTACTAACTTGTTATT+TGG 0.087936 1_2:+73600309 None:intergenic
TCAGATCCATTACTACTTTA+TGG 0.129739 1_2:-73598011 Msa0091470:CDS
AAGGAAAGACTTTGCATAAA+TGG 0.175876 1_2:-73597269 Msa0091470:CDS
GTTACATTGCCATCAATTTC+AGG 0.200205 1_2:-73594264 Msa0091470:three_prime_UTR
AAGGACCCACGCTTTGTTAA+TGG 0.235075 1_2:-73594160 Msa0091470:three_prime_UTR
CTTGTTACAGCTGGATTAAA+TGG 0.255776 1_2:-73595605 Msa0091470:intron
TTTCTTTAGTGTGAAAATTC+AGG 0.259077 1_2:-73598651 Msa0091470:intron
TCCTCCGGAGCATGTTATTT+TGG 0.279354 1_2:-73600493 Msa0091470:CDS
ATGCTACTAACTTGTTATTT+GGG 0.325588 1_2:+73600310 None:intergenic
AACGCGGCGGTGGTGGAAAA+AGG 0.330472 1_2:+73601873 None:intergenic
TGCATAAATGGCAGAAGTGC+TGG 0.343823 1_2:-73597257 Msa0091470:CDS
AGTATATATTTCATCTCCTT+TGG 0.347787 1_2:+73600275 None:intergenic
TTATTCAAGGCTGCTGTTGC+CGG 0.348454 1_2:-73597194 Msa0091470:CDS
AAGCCTTGATGACTTGAAAC+TGG 0.362460 1_2:+73597454 None:intergenic
TTTGTTCTTACATTATCAAC+AGG 0.370728 1_2:+73595788 None:intergenic
TCCTATTGTTCTCAGGTTCT+CGG 0.373350 1_2:-73598146 Msa0091470:CDS
CATTAACAGATGGAACCTTT+TGG 0.374692 1_2:+73600541 None:intergenic
AAACAAATATTTCTTGTTCT+CGG 0.375239 1_2:+73599331 None:intergenic
GTTGCATATGAGAGAGAAAA+TGG 0.377111 1_2:-73598602 Msa0091470:CDS
TCCTCCTCCGGTGGCGAAGA+AGG 0.381536 1_2:-73601784 Msa0091470:CDS
CATTGAGTATATGGCAATAA+AGG 0.386482 1_2:-73594179 Msa0091470:three_prime_UTR
TAGTCATGTTTAGAGTCTTT+AGG 0.391930 1_2:+73594433 None:intergenic
GAAATATTTGTTTGTTGCAT+CGG 0.392351 1_2:-73599321 Msa0091470:CDS
GACTAATCATCTTTAGTCTT+GGG 0.397517 1_2:-73594415 Msa0091470:exon
ATTTGTCTCCTATTGTTCTC+AGG 0.397926 1_2:-73598153 Msa0091470:CDS
GAAGAATCCACATAGTATAC+TGG 0.404464 1_2:+73598491 None:intergenic
ATACGCGGAGGTGGTGAAAT+GGG 0.407509 1_2:-73597392 Msa0091470:CDS
TTTAAGACCTTCTTCAGGCT+TGG 0.409306 1_2:+73599259 None:intergenic
ATGTAGATTTGAGAAACTTC+AGG 0.410218 1_2:-73594481 Msa0091470:intron
GGGAGGCAGTGGTATGAGAA+TGG 0.419208 1_2:-73597371 Msa0091470:CDS
TGAGATAAAAGGAAGGATAA+AGG 0.422851 1_2:-73600670 Msa0091470:CDS
AGGAGAATTCCCACCTTGTC+AGG 0.423174 1_2:+73600129 None:intergenic
ATTTATGCAAAGTCTTTCCT+TGG 0.424710 1_2:+73597271 None:intergenic
CCACATATTCTTGTTACAGC+TGG 0.425203 1_2:-73595614 Msa0091470:CDS
TGCTCGACCTTCTTCGCCAC+CGG 0.425802 1_2:+73601777 None:intergenic
CTGACAAGAGGCTCTCCAAT+TGG 0.430484 1_2:+73600222 None:intergenic
TACAGGACCTGATGCTCCTC+CGG 0.432220 1_2:-73600508 Msa0091470:CDS
CGGAGATAGGAAAGCACATC+GGG 0.432650 1_2:+73601684 None:intergenic
GATAAAGGAGGAAGATATAT+CGG 0.433161 1_2:-73600655 Msa0091470:CDS
TCTTGTTCTCGGAAGCTTCA+AGG 0.434998 1_2:+73599342 None:intergenic
TTCTTATTCCCCACAGAGAA+AGG 0.435804 1_2:-73599097 Msa0091470:intron
GAAGAAGGTCGAGCACAAAA+TGG 0.436268 1_2:-73601769 Msa0091470:CDS
ACATGCTCCGGAGGAGCATC+AGG 0.436439 1_2:+73600501 None:intergenic
AGGAAGAGAAAGAGTGAGGA+CGG 0.436466 1_2:+73601893 None:intergenic
GTGAGAGAACGCGGCGGTGG+TGG 0.438627 1_2:+73601866 None:intergenic
TGACTAATCATCTTTAGTCT+TGG 0.440202 1_2:-73594416 Msa0091470:exon
GTGTAACATCAAACCTTGAA+TGG 0.441077 1_2:-73600200 Msa0091470:CDS
TAGGAAAGTCCTGAAATTGA+TGG 0.442634 1_2:+73594255 None:intergenic
ACCTTCTTCGCCACCGGAGG+AGG 0.442989 1_2:+73601783 None:intergenic
TCATTCTCCGCTTCCTCCTC+CGG 0.443491 1_2:-73601796 Msa0091470:CDS
TTTAAATGTGAGCTTGGTGC+TGG 0.444477 1_2:-73595388 Msa0091470:CDS
TATACGCGGAGGTGGTGAAA+TGG 0.448082 1_2:-73597393 Msa0091470:CDS
GTGGTGAAATGGGGAGGCAG+TGG 0.448275 1_2:-73597382 Msa0091470:CDS
TTCGCCACCGGAGGAGGAAG+CGG 0.452605 1_2:+73601789 None:intergenic
TCCGAGAACCTGAGAACAAT+AGG 0.454495 1_2:+73598145 None:intergenic
TATGAGACCGGATTTATTCA+AGG 0.457431 1_2:-73597207 Msa0091470:CDS
CATCAAGTATCTCACATCAT+AGG 0.459129 1_2:+73594296 None:intergenic
TTATGGCTACGGGTCTTATG+AGG 0.462890 1_2:-73597994 Msa0091470:intron
ATCGAGACTCAAGCTCCAAT+TGG 0.464487 1_2:-73600237 Msa0091470:CDS
GATGTTTCCAAGCCTGAAGA+AGG 0.469052 1_2:-73599266 Msa0091470:CDS
AAGTAGAATTCCTCCTTCCT+AGG 0.474833 1_2:+73595830 None:intergenic
TCCTCTCACTACTTCCGAAT+GGG 0.476665 1_2:-73597126 Msa0091470:CDS
AAAGAAATTTACCTCCCATT+CGG 0.479223 1_2:+73597112 None:intergenic
GCATAAATGGCAGAAGTGCT+GGG 0.479981 1_2:-73597256 Msa0091470:CDS
CCAGCTGTAACAAGAATATG+TGG 0.480307 1_2:+73595614 None:intergenic
CAAAGTTCGTGGCAAAATTG+AGG 0.482652 1_2:-73595441 Msa0091470:CDS
CAGGCATGGCTTCATGCGTT+AGG 0.483360 1_2:-73599425 Msa0091470:CDS
CCATTACTACTTTATGGCTA+CGG 0.485771 1_2:-73598005 Msa0091470:CDS
AAAACTTTAAGACCTTCTTC+AGG 0.489996 1_2:+73599254 None:intergenic
CATTACTACTTTATGGCTAC+GGG 0.491993 1_2:-73598004 Msa0091470:CDS
GTTTATCACCTTCCATCTGT+TGG 0.494857 1_2:-73598563 Msa0091470:CDS
TTCTGAACCTGCAAAGTTCG+TGG 0.496672 1_2:-73595452 Msa0091470:CDS
GAAGTAGTGAGAGGAATAGT+TGG 0.497815 1_2:+73597134 None:intergenic
TGCTGGTTTCACTTAAGCTA+TGG 0.498783 1_2:+73594346 None:intergenic
GTGGTGAGAGAACGCGGCGG+TGG 0.500012 1_2:+73601863 None:intergenic
GGAGGCAGTGGTATGAGAAT+GGG 0.502337 1_2:-73597370 Msa0091470:CDS
CATCATCACCAGCCCATTCA+AGG 0.504061 1_2:+73600187 None:intergenic
CCGTAGCCATAAAGTAGTAA+TGG 0.504218 1_2:+73598005 None:intergenic
TGTAGGAATGGGGTGATCCT+AGG 0.505042 1_2:-73595847 Msa0091470:intron
AAGTCGTCATCGGACGGCGG+TGG 0.505447 1_2:+73601844 None:intergenic
TTAGAATCGATAACTACTAC+TGG 0.506653 1_2:-73601731 Msa0091470:CDS
AAAGTTCGTGGCAAAATTGA+GGG 0.507662 1_2:-73595440 Msa0091470:CDS
GATACCTGACATGACGGAAT+CGG 0.508137 1_2:+73601644 None:intergenic
CTATGATGTGAGATACTTGA+TGG 0.509337 1_2:-73594295 Msa0091470:three_prime_UTR
CCACTTTCAAGACTTCTTAG+CGG 0.515524 1_2:+73598536 None:intergenic
ATGTGAGATACTTGATGGTA+TGG 0.515818 1_2:-73594290 Msa0091470:three_prime_UTR
ACAGCAGCCTTGAATAAATC+CGG 0.515832 1_2:+73597200 None:intergenic
TTTGCGTTACCTTTCTCTGT+GGG 0.516043 1_2:+73599088 None:intergenic
TACACCGATTCCGTCATGTC+AGG 0.516554 1_2:-73601648 Msa0091470:intron
AAGAAGTCTTGAAAGTGGTC+AGG 0.517098 1_2:-73598531 Msa0091470:CDS
TAAGAAAACATTGGAAGGAA+AGG 0.518481 1_2:-73600601 Msa0091470:CDS
TCATCCAAAATAACATGCTC+CGG 0.519337 1_2:+73600489 None:intergenic
TGTTTATGACTATGATATGA+AGG 0.520048 1_2:-73598405 Msa0091470:CDS
CTGTGAAGAGATGGAATGAT+TGG 0.521765 1_2:-73594374 Msa0091470:three_prime_UTR
ATCCCAGTTTCAAGTCATCA+AGG 0.523752 1_2:-73597457 Msa0091470:CDS
GTGTGGATGCTGTGAAGAGA+TGG 0.525321 1_2:-73594383 Msa0091470:three_prime_UTR
CCTTATATCTGATAACCAAA+AGG 0.525429 1_2:-73600556 Msa0091470:CDS
TGGAGTTCTTAATATGAGAC+CGG 0.525945 1_2:-73597219 Msa0091470:CDS
GTTAATGACACCATGCCTAC+AGG 0.526408 1_2:-73600525 Msa0091470:CDS
GTAATAAGGCCCTTTGCGTA+CGG 0.527741 1_2:+73600629 None:intergenic
AGAACCAGGGTATATGCTGC+TGG 0.529916 1_2:+73594329 None:intergenic
TAATAAGGCCCTTTGCGTAC+GGG 0.530860 1_2:+73600630 None:intergenic
TTACTATTATAAGAAAACAT+TGG 0.531391 1_2:-73600610 Msa0091470:CDS
GTTGTCACAACATCCACAAA+AGG 0.531779 1_2:+73597167 None:intergenic
CTGTTGTTTAAATGTGAGCT+TGG 0.533236 1_2:-73595394 Msa0091470:CDS
GAACAAAACTCAAGGAAATG+AGG 0.533398 1_2:+73598198 None:intergenic
ATAGGAAAGCACATCGGGAT+CGG 0.541107 1_2:+73601689 None:intergenic
TGTAACATCAAACCTTGAAT+GGG 0.542086 1_2:-73600199 Msa0091470:CDS
GTTAAACATATTTGCAAACA+AGG 0.545908 1_2:+73594215 None:intergenic
CAGTGGGCACGTGCTTCAGA+TGG 0.549003 1_2:-73598089 Msa0091470:CDS
TATTGATCCAGTATACTATG+TGG 0.549092 1_2:-73598498 Msa0091470:CDS
GTGAGGACGGAAACAGTTAG+TGG 0.550395 1_2:+73601906 None:intergenic
AATAAGAACTGTAGTTGAAG+AGG 0.553201 1_2:+73599112 None:intergenic
CAATAGGAGACAAATAATAC+AGG 0.554932 1_2:+73598161 None:intergenic
TATGACTATGATATGAAGGC+TGG 0.555817 1_2:-73598401 Msa0091470:CDS
TATTATAAGAAAACATTGGA+AGG 0.558599 1_2:-73600606 Msa0091470:CDS
AAAGATCTTGTGAAGCTCGA+TGG 0.561830 1_2:-73598035 Msa0091470:CDS
GAGATCATTTCTTTATTAAG+CGG 0.562126 1_2:-73599187 Msa0091470:CDS
TGGATGCCATTAACAAAGCG+TGG 0.562180 1_2:+73594154 None:intergenic
CATCGGAAAGTAAAACTACA+AGG 0.563926 1_2:-73599304 Msa0091470:CDS
AGCATCAGGTCCTGTAGGCA+TGG 0.564851 1_2:+73600515 None:intergenic
TTCCTCTCACTACTTCCGAA+TGG 0.570331 1_2:-73597127 Msa0091470:CDS
CATAAATGGCAGAAGTGCTG+GGG 0.572685 1_2:-73597255 Msa0091470:CDS
TATCGGCACCCGTACGCAAA+GGG 0.574415 1_2:-73600638 Msa0091470:CDS
AATCATCTTTAGTCTTGGGA+TGG 0.579697 1_2:-73594411 Msa0091470:exon
CAACAAAATACGTCACTGAA+AGG 0.580218 1_2:-73598112 Msa0091470:CDS
ATAGCTCATATACGCGGAGG+TGG 0.584461 1_2:-73597401 Msa0091470:CDS
TGCTCTAGTTTATGTAACAA+TGG 0.586588 1_2:-73600166 Msa0091470:CDS
AATACGTCACTGAAAGGCAG+TGG 0.587769 1_2:-73598106 Msa0091470:CDS
TGGTAGAATGAATGATGATA+CGG 0.587894 1_2:+73602117 None:intergenic
TCGACCTTCTTCGCCACCGG+AGG 0.588350 1_2:+73601780 None:intergenic
AACATCCACAAAAGGTACTC+CGG 0.590525 1_2:+73597175 None:intergenic
GATAAAAGGAAGGATAAAGG+AGG 0.590891 1_2:-73600667 Msa0091470:CDS
TGCGGAGGTGAAGTCGTCAT+CGG 0.590943 1_2:+73601834 None:intergenic
GAGGTGAAGTCGTCATCGGA+CGG 0.591838 1_2:+73601838 None:intergenic
TAGGAAGAATGTATAAGTGA+AGG 0.591931 1_2:+73594452 None:intergenic
AGGCTTTCATTGTTAGATCG+AGG 0.595178 1_2:-73597437 Msa0091470:CDS
GGAATGGGGTGATCCTAGGA+AGG 0.598189 1_2:-73595843 Msa0091470:CDS
CCGCTAAGAAGTCTTGAAAG+TGG 0.599154 1_2:-73598536 Msa0091470:CDS
ATTTGCGTTACCTTTCTCTG+TGG 0.601829 1_2:+73599087 None:intergenic
GAGCAATTGAACAAAACTCA+AGG 0.602027 1_2:+73598190 None:intergenic
ACATCAAACCTTGAATGGGC+TGG 0.602081 1_2:-73600195 Msa0091470:CDS
CTTATGTTACTGTAGGAATG+GGG 0.605360 1_2:-73595857 Msa0091470:intron
TGAGACTGTGACAGAGATTG+CGG 0.609474 1_2:+73601816 None:intergenic
TACGCGGAGGTGGTGAAATG+GGG 0.610390 1_2:-73597391 Msa0091470:CDS
CAGCACGAATACTACAGTAT+CGG 0.612278 1_2:-73600450 Msa0091470:CDS
TAGGCTTAGAAGTTAGAACC+AGG 0.613666 1_2:+73594315 None:intergenic
TTCTCCGCTTCCTCCTCCGG+TGG 0.614838 1_2:-73601793 Msa0091470:CDS
ACGGAGATAGGAAAGCACAT+CGG 0.617599 1_2:+73601683 None:intergenic
ATATCGGCACCCGTACGCAA+AGG 0.621018 1_2:-73600639 Msa0091470:CDS
GGAGGAGCATCAGGTCCTGT+AGG 0.622563 1_2:+73600510 None:intergenic
GCGGTTCACCAACAGATGGA+AGG 0.623497 1_2:+73598555 None:intergenic
TTGCGTTACCTTTCTCTGTG+GGG 0.623901 1_2:+73599089 None:intergenic
AAGTCTTGAAAGTGGTCAGG+TGG 0.624496 1_2:-73598528 Msa0091470:CDS
GGCATGGTGTCATTAACAGA+TGG 0.625215 1_2:+73600531 None:intergenic
ATTATTGATACCTGACATGA+CGG 0.625741 1_2:+73601638 None:intergenic
CTTAGCGGTTCACCAACAGA+TGG 0.627063 1_2:+73598551 None:intergenic
TTTGATGTTACACTGACAAG+AGG 0.630655 1_2:+73600210 None:intergenic
ACGGCGGTGGTGAGAGAACG+CGG 0.632285 1_2:+73601857 None:intergenic
TTTCGGTATACAAGTGACAT+GGG 0.632469 1_2:+73598056 None:intergenic
GGATGCCATTAACAAAGCGT+GGG 0.633009 1_2:+73594155 None:intergenic
TCTCACTACTTCCGAATGGG+AGG 0.634084 1_2:-73597123 Msa0091470:intron
TTGTTCTTACATTATCAACA+GGG 0.634748 1_2:+73595789 None:intergenic
GCGGAGGTGGTGAAATGGGG+AGG 0.638605 1_2:-73597388 Msa0091470:CDS
GACACTACTGTCAGCCATCG+TGG 0.641773 1_2:-73599209 Msa0091470:CDS
AGCCTTGATGACTTGAAACT+GGG 0.642429 1_2:+73597455 None:intergenic
TCCCATTCGGAAGTAGTGAG+AGG 0.647947 1_2:+73597125 None:intergenic
TAATATTCTTAGACCTGACA+AGG 0.648307 1_2:-73600142 Msa0091470:intron
TCATAGTCATAAACAGAGGG+AGG 0.649085 1_2:+73598413 None:intergenic
ATACGTCACTGAAAGGCAGT+GGG 0.650078 1_2:-73598105 Msa0091470:CDS
TGTTCTTACATTATCAACAG+GGG 0.651767 1_2:+73595790 None:intergenic
ATATCATAGTCATAAACAGA+GGG 0.651784 1_2:+73598410 None:intergenic
GGTTCAGAATACAGAACACG+TGG 0.652073 1_2:+73595466 None:intergenic
GCATATGCAGAAGACACCAA+AGG 0.654059 1_2:-73600291 Msa0091470:CDS
TAAAGAAATGATCTCCACGA+TGG 0.660652 1_2:+73599195 None:intergenic
AAAAGATACTTGTCTTTACG+AGG 0.660853 1_2:-73599390 Msa0091470:CDS
TTCAGAAATGCATTATGACA+TGG 0.664136 1_2:+73602097 None:intergenic
GTCTTGGGATGGCTAAAGTG+TGG 0.667262 1_2:-73594400 Msa0091470:three_prime_UTR
TATTGTTCTCAGGTTCTCGG+AGG 0.667662 1_2:-73598143 Msa0091470:CDS
GTGAAGTCGTCATCGGACGG+CGG 0.673247 1_2:+73601841 None:intergenic
CAGCTGTAACAAGAATATGT+GGG 0.675217 1_2:+73595615 None:intergenic
ATGGGGTGATCCTAGGAAGG+AGG 0.677198 1_2:-73595840 Msa0091470:CDS
TCCAAAATAACATGCTCCGG+AGG 0.678194 1_2:+73600492 None:intergenic
GAAACCAGCAGCATATACCC+TGG 0.686805 1_2:-73594333 Msa0091470:three_prime_UTR
GTTATAGCTCATATACGCGG+AGG 0.697147 1_2:-73597404 Msa0091470:CDS
ATAAATGGCAGAAGTGCTGG+GGG 0.697795 1_2:-73597254 Msa0091470:CDS
GATCGGAGCGAGAATCATCA+CGG 0.699674 1_2:+73601706 None:intergenic
CATATCATAGTCATAAACAG+AGG 0.703744 1_2:+73598409 None:intergenic
AGGCTTAGAAGTTAGAACCA+GGG 0.707056 1_2:+73594316 None:intergenic
GACTGTGACAGAGATTGCGG+AGG 0.745405 1_2:+73601819 None:intergenic
TATGTTATAGCTCATATACG+CGG 0.752567 1_2:-73597407 Msa0091470:CDS
GTTCAGAATACAGAACACGT+GGG 0.775180 1_2:+73595467 None:intergenic
GCGGTGGTGAGAGAACGCGG+CGG 0.860594 1_2:+73601860 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTTTATTTTATTTATT+GGG + chr1_2:73594186-73594205 None:intergenic 0.0%
!!! AATTTTAAATAAAATAAAAA+CGG + chr1_2:73595824-73595843 None:intergenic 0.0%
!!! TTAAAATTTTATTTCTTTTC+AGG - chr1_2:73595836-73595855 Msa0091470:CDS 10.0%
!!! TGTGAATTTTTTTTTAATTA+AGG + chr1_2:73596329-73596348 None:intergenic 10.0%
!! TAATTAAAAAAAAATTCACA+AGG - chr1_2:73596329-73596348 Msa0091470:intron 10.0%
!!! AAAAAGGTAATTAATTATTT+TGG + chr1_2:73597317-73597336 None:intergenic 10.0%
!!! GTTTTATTAAATATTTAAAC+AGG + chr1_2:73597899-73597918 None:intergenic 10.0%
!! TATTATTTATCTTTGTATAT+TGG + chr1_2:73599602-73599621 None:intergenic 10.0%
!!! ATACAAAAACAATTTTACAT+TGG + chr1_2:73594938-73594957 None:intergenic 15.0%
!!! ATTCATATTTTTGAATTTCT+AGG - chr1_2:73595450-73595469 Msa0091470:CDS 15.0%
!!! GTTTTCTTATAATAGTAATA+AGG + chr1_2:73595561-73595580 None:intergenic 15.0%
!! TTACTATTATAAGAAAACAT+TGG - chr1_2:73595563-73595582 Msa0091470:intron 15.0%
!!! TTTTCAATTTCAATTTGTTT+AGG - chr1_2:73596115-73596134 Msa0091470:intron 15.0%
!! TAGATATTTGAATATATACA+AGG - chr1_2:73596547-73596566 Msa0091470:intron 15.0%
!!! AATAATTAATTACCTTTTTG+AGG - chr1_2:73597318-73597337 Msa0091470:CDS 15.0%
!!! ATCCATATTTATATTTCTTT+TGG - chr1_2:73598425-73598444 Msa0091470:CDS 15.0%
!!! TTTAAATCATTTTCATATGT+TGG + chr1_2:73599108-73599127 None:intergenic 15.0%
!! TGTATATTGGTAAAAAAATA+TGG + chr1_2:73599589-73599608 None:intergenic 15.0%
!! TAAAGATAAAAAATATGCAT+TGG - chr1_2:73599710-73599729 Msa0091470:intron 15.0%
!! ATTCAGTTTATTTATCAATT+TGG + chr1_2:73599900-73599919 None:intergenic 15.0%
!!! AAATCATGTTGAAATTTTTT+CGG + chr1_2:73599994-73600013 None:intergenic 15.0%
!!! TATTATAATCCCTATTTTTA+AGG + chr1_2:73601074-73601093 None:intergenic 15.0%
!! TTAAAAATAGGGATTATAAT+AGG - chr1_2:73601073-73601092 Msa0091470:intron 15.0%
!!! AGTTTAATAAATTTTATTCC+CGG + chr1_2:73601192-73601211 None:intergenic 15.0%
!!! AAACCATGAAATTTTTAAAA+TGG - chr1_2:73601557-73601576 Msa0091470:intron 15.0%
!!! TGCATTTCTGAATATTTTTT+AGG - chr1_2:73594087-73594106 Msa0091470:three_prime_UTR 20.0%
!!! AAGCTTATCTTCAATTTTTT+TGG + chr1_2:73595478-73595497 None:intergenic 20.0%
!! TATTATAAGAAAACATTGGA+AGG - chr1_2:73595567-73595586 Msa0091470:intron 20.0%
!! TTAGATCATATCATTATCAT+GGG - chr1_2:73595757-73595776 Msa0091470:intron 20.0%
!! TATCTGAACAATTAAATACT+GGG + chr1_2:73596075-73596094 None:intergenic 20.0%
!! ATATCTGAACAATTAAATAC+TGG + chr1_2:73596076-73596095 None:intergenic 20.0%
!!! AATTAGGTTCTAATTCAATT+CGG + chr1_2:73596152-73596171 None:intergenic 20.0%
!!! TATCTAATTGAGCTTTTTTA+AGG - chr1_2:73596293-73596312 Msa0091470:intron 20.0%
!! AAACAAATATTTCTTGTTCT+CGG + chr1_2:73596845-73596864 None:intergenic 20.0%
!!! ATTATTTTGGCTTTTGAAAA+TGG + chr1_2:73597304-73597323 None:intergenic 20.0%
!!! AGGTGATAAACAATTATTTT+TGG + chr1_2:73597601-73597620 None:intergenic 20.0%
!!! CTCTAGAATTTAATTTCATA+AGG + chr1_2:73597875-73597894 None:intergenic 20.0%
!! AGCCAAAAGAAATATAAATA+TGG + chr1_2:73598430-73598449 None:intergenic 20.0%
!! TCAGAAATCTATTAATGAAA+CGG + chr1_2:73598461-73598480 None:intergenic 20.0%
!! TTATAGAATCAAGAAGAAAT+AGG + chr1_2:73598661-73598680 None:intergenic 20.0%
!! TAAAGTTAAAAAGAAACATC+TGG + chr1_2:73599139-73599158 None:intergenic 20.0%
!!! CTCATTATGTCTTTTAAAAT+TGG - chr1_2:73599160-73599179 Msa0091470:CDS 20.0%
!!! ATTTTATAACTTGTAAGAGA+AGG - chr1_2:73599371-73599390 Msa0091470:CDS 20.0%
!! TATCTTTACAAAAAAGACAA+CGG - chr1_2:73599425-73599444 Msa0091470:CDS 20.0%
!! AAATATGGTCAAAATATGTT+AGG + chr1_2:73599574-73599593 None:intergenic 20.0%
!! AATATCATATAAGATGTTGT+TGG - chr1_2:73599618-73599637 Msa0091470:intron 20.0%
!!! AATCATGTTGAAATTTTTTC+GGG + chr1_2:73599993-73600012 None:intergenic 20.0%
!!! AATTTGTTTGTCTTTTAAAC+TGG - chr1_2:73600116-73600135 Msa0091470:intron 20.0%
!!! TAATTTTTATTCTCTCTGTA+AGG - chr1_2:73600462-73600481 Msa0091470:CDS 20.0%
!!! TTTTAAACTTGTTTAGTGTT+TGG - chr1_2:73600855-73600874 Msa0091470:intron 20.0%
!!! TTTAAACTTGTTTAGTGTTT+GGG - chr1_2:73600856-73600875 Msa0091470:intron 20.0%
!! AGTTTATCAAATTTATTGCA+AGG - chr1_2:73600958-73600977 Msa0091470:intron 20.0%
!! GTATTTAGAAAAAAGATGTT+TGG - chr1_2:73601024-73601043 Msa0091470:intron 20.0%
!! GTTAACATTATAATATTCCA+AGG - chr1_2:73601046-73601065 Msa0091470:intron 20.0%
!!! GTTTAATAAATTTTATTCCC+GGG + chr1_2:73601191-73601210 None:intergenic 20.0%
!! ATTAAACTTGTAACAAACAT+AGG - chr1_2:73601204-73601223 Msa0091470:intron 20.0%
!!! AAGCCATTTTAAAAATTTCA+TGG + chr1_2:73601563-73601582 None:intergenic 20.0%
!!! TTTTTCTTCACAAATGTATT+TGG - chr1_2:73601626-73601645 Msa0091470:intron 20.0%
!!! AACTTTAGAGAGTAAAAAAA+TGG + chr1_2:73602042-73602061 None:intergenic 20.0%
!!! TTAAAAAGTATTTTTCAGCT+TGG - chr1_2:73602073-73602092 Msa0091470:five_prime_UTR 20.0%
!! TTCATTCAGAAGATATTTTG+AGG + chr1_2:73594672-73594691 None:intergenic 25.0%
! TAGCTTATGAAAAAAGCTTA+TGG + chr1_2:73594774-73594793 None:intergenic 25.0%
! TAGCTTATAAAAACAGCTTA+AGG + chr1_2:73594964-73594983 None:intergenic 25.0%
!!! GCTGTTTTTATAAGCTATAT+TGG - chr1_2:73594967-73594986 Msa0091470:intron 25.0%
! ATATGTTTGAACTCAATGTA+TGG - chr1_2:73595275-73595294 Msa0091470:intron 25.0%
!!! ATAAGAAGGCTTTTGAAATT+AGG - chr1_2:73595398-73595417 Msa0091470:CDS 25.0%
!!! TATTTTGGATGAGAATATCA+AGG - chr1_2:73595695-73595714 Msa0091470:intron 25.0%
! GTTAGATCATATCATTATCA+TGG - chr1_2:73595756-73595775 Msa0091470:intron 25.0%
!!! ATGCTACTAACTTGTTATTT+GGG + chr1_2:73595866-73595885 None:intergenic 25.0%
!!! TATGCTACTAACTTGTTATT+TGG + chr1_2:73595867-73595886 None:intergenic 25.0%
! AGTATATATTTCATCTCCTT+TGG + chr1_2:73595901-73595920 None:intergenic 25.0%
! TCTTTATATCTGGCTAAATT+AGG + chr1_2:73596168-73596187 None:intergenic 25.0%
!! ATTTTCAGCATCTTTATATC+TGG + chr1_2:73596178-73596197 None:intergenic 25.0%
! AAGGTTTATAGTTATTCAGT+AGG - chr1_2:73596348-73596367 Msa0091470:intron 25.0%
!! GAAATATTTGTTTGTTGCAT+CGG - chr1_2:73596852-73596871 Msa0091470:intron 25.0%
! GAGATCATTTCTTTATTAAG+CGG - chr1_2:73596986-73597005 Msa0091470:intron 25.0%
! CAAGATTATGCTCAAAATAA+AGG + chr1_2:73597135-73597154 None:intergenic 25.0%
!! GAAACTTTTAATCCTCAAAA+AGG + chr1_2:73597333-73597352 None:intergenic 25.0%
! ATTCATGTGTTAACACTTTA+CGG + chr1_2:73597438-73597457 None:intergenic 25.0%
!! AGAAAATTCAGTGTAAGTTT+TGG + chr1_2:73597507-73597526 None:intergenic 25.0%
! TTTCTTTAGTGTGAAAATTC+AGG - chr1_2:73597522-73597541 Msa0091470:intron 25.0%
! ATATCATAGTCATAAACAGA+GGG + chr1_2:73597766-73597785 None:intergenic 25.0%
! TGTTTATGACTATGATATGA+AGG - chr1_2:73597768-73597787 Msa0091470:intron 25.0%
! AATAAAACTATAAGGACTTG+TGG - chr1_2:73597911-73597930 Msa0091470:intron 25.0%
! CAAAGCATAGAATTCAAAAT+TGG + chr1_2:73598247-73598266 None:intergenic 25.0%
!! CAATTTTGAATTCTATGCTT+TGG - chr1_2:73598245-73598264 Msa0091470:intron 25.0%
!!! TCTATGCTTTGGTTTTATAT+TGG - chr1_2:73598256-73598275 Msa0091470:intron 25.0%
! TCAAGTAATAAACATTGATG+TGG + chr1_2:73598290-73598309 None:intergenic 25.0%
! TGAATACTTTCTTGTCTTAT+TGG - chr1_2:73598333-73598352 Msa0091470:intron 25.0%
! TTTGCTTGTCTAACAATTAA+AGG + chr1_2:73598497-73598516 None:intergenic 25.0%
! TGAAAAAAAATTCTGTTCCA+AGG - chr1_2:73598885-73598904 Msa0091470:intron 25.0%
!! ATCATTTTCATATGTTGGTA+TGG + chr1_2:73599103-73599122 None:intergenic 25.0%
! AATACAAATTCATGCTGTTA+GGG + chr1_2:73599314-73599333 None:intergenic 25.0%
!! AAGATATTTTCCTTTCTTAC+AGG + chr1_2:73599411-73599430 None:intergenic 25.0%
! AAGATCAATTAAAACAAGAG+AGG + chr1_2:73599490-73599509 None:intergenic 25.0%
!! ATACTTTTAATGCATCAAGT+TGG + chr1_2:73600041-73600060 None:intergenic 25.0%
! TTTAAACTGGTATTAAGAAG+AGG - chr1_2:73600129-73600148 Msa0091470:intron 25.0%
! TAAAACTCACATACTTAACT+CGG + chr1_2:73600189-73600208 None:intergenic 25.0%
!! GATTTCTTTTGTGTTTCTTT+TGG - chr1_2:73600277-73600296 Msa0091470:CDS 25.0%
! TTATTTCCTTATGTTACTGT+AGG - chr1_2:73600309-73600328 Msa0091470:CDS 25.0%
! TTGTTCTTACATTATCAACA+GGG + chr1_2:73600387-73600406 None:intergenic 25.0%
! TTTGTTCTTACATTATCAAC+AGG + chr1_2:73600388-73600407 None:intergenic 25.0%
! TCGGACAAAAAATAAATATG+CGG + chr1_2:73600439-73600458 None:intergenic 25.0%
! GAGAGAATAAAAATTATGCT+CGG + chr1_2:73600458-73600477 None:intergenic 25.0%
! ACAAGTTTAAAAACAAACAG+CGG + chr1_2:73600847-73600866 None:intergenic 25.0%
!! TTAAACTTGTTTAGTGTTTG+GGG - chr1_2:73600857-73600876 Msa0091470:intron 25.0%
!!! TTGTTCTTTTGTTTTGGTTA+CGG - chr1_2:73600898-73600917 Msa0091470:intron 25.0%
! ATTCCTTAGAACATAAAGAT+GGG - chr1_2:73600987-73601006 Msa0091470:intron 25.0%
!!! CATCTTTTTTCTAAATACCT+TGG + chr1_2:73601022-73601041 None:intergenic 25.0%
!! TAATTTTATTCCCATCTTCA+TGG - chr1_2:73601106-73601125 Msa0091470:intron 25.0%
!! AATTTTATTCCCATCTTCAT+GGG - chr1_2:73601107-73601126 Msa0091470:intron 25.0%
!! TTTATTTCCACCATTTTCTT+TGG - chr1_2:73601133-73601152 Msa0091470:intron 25.0%
!! TTATTTCCACCATTTTCTTT+GGG - chr1_2:73601134-73601153 Msa0091470:intron 25.0%
!! AAAAGTTTTCCCAAAGAAAA+TGG + chr1_2:73601146-73601165 None:intergenic 25.0%
! AGTTATATTTGTAGATTCCT+GGG + chr1_2:73601254-73601273 None:intergenic 25.0%
! AAGTTATATTTGTAGATTCC+TGG + chr1_2:73601255-73601274 None:intergenic 25.0%
! TAGTACCTTCATTAAACTAA+GGG + chr1_2:73601290-73601309 None:intergenic 25.0%
! ATAGTACCTTCATTAAACTA+AGG + chr1_2:73601291-73601310 None:intergenic 25.0%
! ATTTATTAGTGAGCAAGTTA+TGG - chr1_2:73601358-73601377 Msa0091470:intron 25.0%
!! GTCTTTAAAAAGGAAAGTAA+AGG + chr1_2:73601588-73601607 None:intergenic 25.0%
!! CAACGAATTTGTCTTTAAAA+AGG + chr1_2:73601598-73601617 None:intergenic 25.0%
! GTTAAACATATTTGCAAACA+AGG + chr1_2:73601961-73601980 None:intergenic 25.0%
!! CATTTTACTCATTGAGTATA+TGG - chr1_2:73601985-73602004 Msa0091470:five_prime_UTR 25.0%
! TTGAGAAAAAGATAAAGTAG+CGG - chr1_2:73602104-73602123 Msa0091470:five_prime_UTR 25.0%
TGGTAGAATGAATGATGATA+CGG + chr1_2:73594059-73594078 None:intergenic 30.0%
TTCAGAAATGCATTATGACA+TGG + chr1_2:73594079-73594098 None:intergenic 30.0%
TTAGAATCGATAACTACTAC+TGG - chr1_2:73594442-73594461 Msa0091470:CDS 30.0%
ATTATTGATACCTGACATGA+CGG + chr1_2:73594538-73594557 None:intergenic 30.0%
! TAAGCTATTCTAGAGAGATA+TGG - chr1_2:73594712-73594731 Msa0091470:intron 30.0%
!!! GCTTTTTTCATAAGCTATCT+TGG - chr1_2:73594777-73594796 Msa0091470:intron 30.0%
AAGCTATATTGGAGAACTTA+TGG - chr1_2:73594978-73594997 Msa0091470:intron 30.0%
! TTAGGTTATTTGAGACTGTT+TGG + chr1_2:73595094-73595113 None:intergenic 30.0%
TCAAATAACCTAATCCAAAC+AGG - chr1_2:73595101-73595120 Msa0091470:intron 30.0%
TGAAAACAGCTTATGACATA+AGG + chr1_2:73595127-73595146 None:intergenic 30.0%
TCAAAAAAGTCAATCCAAAG+AGG - chr1_2:73595194-73595213 Msa0091470:intron 30.0%
AATGTCATATTGAACCTCTT+TGG + chr1_2:73595211-73595230 None:intergenic 30.0%
ATATACACACTCACATAAGA+AGG - chr1_2:73595384-73595403 Msa0091470:CDS 30.0%
! AAGCTTTTTGCTGAGATAAA+AGG - chr1_2:73595492-73595511 Msa0091470:intron 30.0%
! TTTTTGCTGAGATAAAAGGA+AGG - chr1_2:73595496-73595515 Msa0091470:intron 30.0%
TGAGATAAAAGGAAGGATAA+AGG - chr1_2:73595503-73595522 Msa0091470:intron 30.0%
GATAAAGGAGGAAGATATAT+CGG - chr1_2:73595518-73595537 Msa0091470:intron 30.0%
TAAGAAAACATTGGAAGGAA+AGG - chr1_2:73595572-73595591 Msa0091470:intron 30.0%
!! CCTTTTGGTTATCAGATATA+AGG + chr1_2:73595620-73595639 None:intergenic 30.0%
CCTTATATCTGATAACCAAA+AGG - chr1_2:73595617-73595636 Msa0091470:CDS 30.0%
TGTAACATCAAACCTTGAAT+GGG - chr1_2:73595974-73595993 Msa0091470:intron 30.0%
! TGCTCTAGTTTATGTAACAA+TGG - chr1_2:73596007-73596026 Msa0091470:intron 30.0%
TAATATTCTTAGACCTGACA+AGG - chr1_2:73596031-73596050 Msa0091470:intron 30.0%
! CAATTAAATACTGGGTTGAA+AGG + chr1_2:73596067-73596086 None:intergenic 30.0%
TTCAGATATAATCAGCACTT+GGG - chr1_2:73596087-73596106 Msa0091470:intron 30.0%
CTGAAAATTAGATGAGATTG+TGG - chr1_2:73596190-73596209 Msa0091470:intron 30.0%
! TTTTCTGCTTAATTCAAAGC+CGG - chr1_2:73596251-73596270 Msa0091470:intron 30.0%
!!! TTTCTGAAGCTGCTATTTTT+TGG + chr1_2:73596432-73596451 None:intergenic 30.0%
!! ATGATAATGGTTTAGAAGTG+AGG + chr1_2:73596626-73596645 None:intergenic 30.0%
CTAAAACTTATATACACGTG+AGG + chr1_2:73596652-73596671 None:intergenic 30.0%
! GTTTAGTATTTTGCTGCATA+TGG - chr1_2:73596675-73596694 Msa0091470:intron 30.0%
AAAAGATACTTGTCTTTACG+AGG - chr1_2:73596783-73596802 Msa0091470:intron 30.0%
!! AAAACTTTAAGACCTTCTTC+AGG + chr1_2:73596922-73596941 None:intergenic 30.0%
AATAAGAACTGTAGTTGAAG+AGG + chr1_2:73597064-73597083 None:intergenic 30.0%
! TGCTTTCCAAAATGTTGTTT+AGG - chr1_2:73597241-73597260 Msa0091470:CDS 30.0%
! AGTTCTCCTAAACAACATTT+TGG + chr1_2:73597250-73597269 None:intergenic 30.0%
ACACTTTACGGAAATAATCA+AGG + chr1_2:73597426-73597445 None:intergenic 30.0%
TATTGATCCAGTATACTATG+TGG - chr1_2:73597675-73597694 Msa0091470:intron 30.0%
CATATCATAGTCATAAACAG+AGG + chr1_2:73597767-73597786 None:intergenic 30.0%
!!! AGTTTTGAAGAAGATTGACT+CGG - chr1_2:73597801-73597820 Msa0091470:intron 30.0%
TGATGTAAAATTGAACAGCT+TGG + chr1_2:73597850-73597869 None:intergenic 30.0%
! AAGCTGTTCAATTTTACATC+AGG - chr1_2:73597849-73597868 Msa0091470:intron 30.0%
CAATAGGAGACAAATAATAC+AGG + chr1_2:73598015-73598034 None:intergenic 30.0%
TCAGATCCATTACTACTTTA+TGG - chr1_2:73598162-73598181 Msa0091470:CDS 30.0%
! TTCTTGTCTTATTGGAACAA+AGG - chr1_2:73598341-73598360 Msa0091470:intron 30.0%
ATATGGATGTTCATGAACAA+AGG + chr1_2:73598413-73598432 None:intergenic 30.0%
ATATATTTATGTTCCCTCTG+TGG - chr1_2:73598540-73598559 Msa0091470:CDS 30.0%
TATGTTATAGCTCATATACG+CGG - chr1_2:73598766-73598785 Msa0091470:intron 30.0%
ATTTATGCAAAGTCTTTCCT+TGG + chr1_2:73598905-73598924 None:intergenic 30.0%
AAGGAAAGACTTTGCATAAA+TGG - chr1_2:73598904-73598923 Msa0091470:intron 30.0%
AAAGAAATTTACCTCCCATT+CGG + chr1_2:73599064-73599083 None:intergenic 30.0%
TTTCATATGTTGGTATGGAA+TGG + chr1_2:73599098-73599117 None:intergenic 30.0%
! TGTCTTTTATGATTGCCTTT+AGG - chr1_2:73599210-73599229 Msa0091470:CDS 30.0%
ATACAAATTCATGCTGTTAG+GGG + chr1_2:73599313-73599332 None:intergenic 30.0%
CAATACAAATTCATGCTGTT+AGG + chr1_2:73599315-73599334 None:intergenic 30.0%
GTAAGAGAAGGAAAATATGT+TGG - chr1_2:73599383-73599402 Msa0091470:CDS 30.0%
ATCAATTAAAACAAGAGAGG+AGG + chr1_2:73599487-73599506 None:intergenic 30.0%
!! TCAACTGTGTCACTTAATAT+GGG - chr1_2:73599747-73599766 Msa0091470:intron 30.0%
!!! TTTTTTTTCTCTCATGACAC+TGG - chr1_2:73599782-73599801 Msa0091470:intron 30.0%
TAGCTGTGATTTCTTCTAAA+TGG + chr1_2:73599838-73599857 None:intergenic 30.0%
!!! TTTTTTCGGGAAATGAGAAA+TGG + chr1_2:73599980-73599999 None:intergenic 30.0%
CATTTGCTTGTTTACTTTCA+TGG + chr1_2:73600069-73600088 None:intergenic 30.0%
AAGTAAACAAGCAAATGTGT+CGG - chr1_2:73600072-73600091 Msa0091470:intron 30.0%
! ATGAAATTCAAGAGCTTTGA+TGG + chr1_2:73600223-73600242 None:intergenic 30.0%
TGTTCTTACATTATCAACAG+GGG + chr1_2:73600386-73600405 None:intergenic 30.0%
AGAACAAATACTGCACTTAA+TGG - chr1_2:73600400-73600419 Msa0091470:intron 30.0%
TTTATTCTCTCTGTAAGGAA+TGG - chr1_2:73600467-73600486 Msa0091470:CDS 30.0%
!! ACGACTTTGTTCTTTTGTTT+TGG - chr1_2:73600892-73600911 Msa0091470:intron 30.0%
CATTCCTTAGAACATAAAGA+TGG - chr1_2:73600986-73601005 Msa0091470:intron 30.0%
ATTCCCATCTTTATGTTCTA+AGG + chr1_2:73600993-73601012 None:intergenic 30.0%
! AAGATGGGAATTTTATTCCA+AGG - chr1_2:73601002-73601021 Msa0091470:intron 30.0%
TTCCAAGGAACCTTAAAAAT+AGG - chr1_2:73601061-73601080 Msa0091470:intron 30.0%
TCCAAGGAACCTTAAAAATA+GGG - chr1_2:73601062-73601081 Msa0091470:intron 30.0%
AATAAAGTTCCCATGAAGAT+GGG + chr1_2:73601119-73601138 None:intergenic 30.0%
AAATAAAGTTCCCATGAAGA+TGG + chr1_2:73601120-73601139 None:intergenic 30.0%
! GTTTTTATGATTTTATGCCC+AGG - chr1_2:73601234-73601253 Msa0091470:intron 30.0%
!! AGTTTAATGAAGGTACTATG+TGG - chr1_2:73601292-73601311 Msa0091470:intron 30.0%
AGTTCTACATTTAAACTCCT+AGG + chr1_2:73601466-73601485 None:intergenic 30.0%
ATGTAGATTTGAGAAACTTC+AGG - chr1_2:73601692-73601711 Msa0091470:CDS 30.0%
TAGGAAGAATGTATAAGTGA+AGG + chr1_2:73601724-73601743 None:intergenic 30.0%
! TAGTCATGTTTAGAGTCTTT+AGG + chr1_2:73601743-73601762 None:intergenic 30.0%
TGACTAATCATCTTTAGTCT+TGG - chr1_2:73601757-73601776 Msa0091470:CDS 30.0%
! GACTAATCATCTTTAGTCTT+GGG - chr1_2:73601758-73601777 Msa0091470:CDS 30.0%
! GGTAATTTCAGATTTTCTCT+AGG + chr1_2:73601940-73601959 None:intergenic 30.0%
CATTGAGTATATGGCAATAA+AGG - chr1_2:73601994-73602013 Msa0091470:five_prime_UTR 30.0%
AAAAAGGAAGAGAAAGAGTG+AGG + chr1_2:73594287-73594306 None:intergenic 35.0%
! ATCATTTTCTTGACGGAGAT+AGG + chr1_2:73594505-73594524 None:intergenic 35.0%
! CGGTGTAATCATTTTCTTGA+CGG + chr1_2:73594512-73594531 None:intergenic 35.0%
! CATACGTCATAAGCTGATTT+CGG + chr1_2:73594745-73594764 None:intergenic 35.0%
ACGAAAACTGCCTATGAAAT+GGG - chr1_2:73594818-73594837 Msa0091470:intron 35.0%
AACTCAATGTATGGACACTA+TGG - chr1_2:73595284-73595303 Msa0091470:intron 35.0%
! AGAGTGTTCATTGTGCAAAT+GGG - chr1_2:73595307-73595326 Msa0091470:intron 35.0%
TTCATTGTGCAAATGGGTAA+AGG - chr1_2:73595313-73595332 Msa0091470:intron 35.0%
GTGAGTGTGTATATAGCAAT+CGG + chr1_2:73595378-73595397 None:intergenic 35.0%
GATAAAAGGAAGGATAAAGG+AGG - chr1_2:73595506-73595525 Msa0091470:intron 35.0%
! CATTAACAGATGGAACCTTT+TGG + chr1_2:73595635-73595654 None:intergenic 35.0%
TCATCCAAAATAACATGCTC+CGG + chr1_2:73595687-73595706 None:intergenic 35.0%
!!! CTACAGTATCGGTACTTTTA+AGG - chr1_2:73595734-73595753 Msa0091470:intron 35.0%
TTTGATGTTACACTGACAAG+AGG + chr1_2:73595966-73595985 None:intergenic 35.0%
GTGTAACATCAAACCTTGAA+TGG - chr1_2:73595973-73595992 Msa0091470:intron 35.0%
GTTCAGATATAATCAGCACT+TGG - chr1_2:73596086-73596105 Msa0091470:intron 35.0%
AAGCAGAAAACATCCAGTTT+CGG + chr1_2:73596241-73596260 None:intergenic 35.0%
TACCATGTTGAAACAAGACA+AGG + chr1_2:73596525-73596544 None:intergenic 35.0%
ACACGTGAGGTAAATGATAA+TGG + chr1_2:73596639-73596658 None:intergenic 35.0%
CATCGGAAAGTAAAACTACA+AGG - chr1_2:73596869-73596888 Msa0091470:intron 35.0%
!! TAAAGTTTTGACACAACGTG+TGG - chr1_2:73596933-73596952 Msa0091470:intron 35.0%
TAAAGAAATGATCTCCACGA+TGG + chr1_2:73596981-73597000 None:intergenic 35.0%
AATTATAATGACAGCGTGCT+TGG - chr1_2:73597159-73597178 Msa0091470:CDS 35.0%
GTTGCATATGAGAGAGAAAA+TGG - chr1_2:73597571-73597590 Msa0091470:intron 35.0%
GAAGAATCCACATAGTATAC+TGG + chr1_2:73597685-73597704 None:intergenic 35.0%
TATGACTATGATATGAAGGC+TGG - chr1_2:73597772-73597791 Msa0091470:intron 35.0%
GAACAAAACTCAAGGAAATG+AGG + chr1_2:73597978-73597997 None:intergenic 35.0%
GAGCAATTGAACAAAACTCA+AGG + chr1_2:73597986-73598005 None:intergenic 35.0%
ATTTGTCTCCTATTGTTCTC+AGG - chr1_2:73598020-73598039 Msa0091470:CDS 35.0%
CAACAAAATACGTCACTGAA+AGG - chr1_2:73598061-73598080 Msa0091470:CDS 35.0%
TTTCGGTATACAAGTGACAT+GGG + chr1_2:73598120-73598139 None:intergenic 35.0%
! TTTTCGGTATACAAGTGACA+TGG + chr1_2:73598121-73598140 None:intergenic 35.0%
CCATTACTACTTTATGGCTA+CGG - chr1_2:73598168-73598187 Msa0091470:CDS 35.0%
CATTACTACTTTATGGCTAC+GGG - chr1_2:73598169-73598188 Msa0091470:CDS 35.0%
CATCTTGCATACAACAAAAC+AGG + chr1_2:73598390-73598409 None:intergenic 35.0%
AATTGTTAGACAAGCAAAGC+TGG - chr1_2:73598499-73598518 Msa0091470:CDS 35.0%
TGGAGTTCTTAATATGAGAC+CGG - chr1_2:73598954-73598973 Msa0091470:intron 35.0%
TATGAGACCGGATTTATTCA+AGG - chr1_2:73598966-73598985 Msa0091470:intron 35.0%
AATATCAGCCAATGCATCTT+TGG + chr1_2:73599275-73599294 None:intergenic 35.0%
TATGTTGGAACCTGTAAGAA+AGG - chr1_2:73599398-73599417 Msa0091470:CDS 35.0%
!! AGTGCTTCTGTTTGATTTTC+TGG - chr1_2:73599449-73599468 Msa0091470:intron 35.0%
TCAACCAAGTCATCTCATAT+GGG + chr1_2:73599535-73599554 None:intergenic 35.0%
!! GTCAACTGTGTCACTTAATA+TGG - chr1_2:73599746-73599765 Msa0091470:intron 35.0%
! CACATAATTTTGTGCACTAC+TGG - chr1_2:73599934-73599953 Msa0091470:intron 35.0%
! TAATTTTGTGCACTACTGGT+TGG - chr1_2:73599938-73599957 Msa0091470:intron 35.0%
AGCTACTATTTGTAGCTTCA+TGG + chr1_2:73600017-73600036 None:intergenic 35.0%
TAACTCGGAAGGAATATAAG+CGG + chr1_2:73600174-73600193 None:intergenic 35.0%
CAACTCCACATAATATCGTA+TGG - chr1_2:73600251-73600270 Msa0091470:CDS 35.0%
TCACTCCATACGATATTATG+TGG + chr1_2:73600259-73600278 None:intergenic 35.0%
TCCTTATGTTACTGTAGGAA+TGG - chr1_2:73600314-73600333 Msa0091470:CDS 35.0%
CCTTATGTTACTGTAGGAAT+GGG - chr1_2:73600315-73600334 Msa0091470:CDS 35.0%
CTTATGTTACTGTAGGAATG+GGG - chr1_2:73600316-73600335 Msa0091470:CDS 35.0%
AAATATGCGGTGAAAGTTAG+AGG + chr1_2:73600426-73600445 None:intergenic 35.0%
! TTCTATTTCTCGTTCTATGC+AGG - chr1_2:73600519-73600538 Msa0091470:CDS 35.0%
CAGCTGTAACAAGAATATGT+GGG + chr1_2:73600561-73600580 None:intergenic 35.0%
CTTGTTACAGCTGGATTAAA+TGG - chr1_2:73600568-73600587 Msa0091470:CDS 35.0%
AAAGTTCGTGGCAAAATTGA+GGG - chr1_2:73600733-73600752 Msa0091470:intron 35.0%
! CTGTTGTTTAAATGTGAGCT+TGG - chr1_2:73600779-73600798 Msa0091470:intron 35.0%
!!! TTCTTTTGTTTTGGTTACGG+TGG - chr1_2:73600901-73600920 Msa0091470:intron 35.0%
!!! TCTTTTGTTTTGGTTACGGT+GGG - chr1_2:73600902-73600921 Msa0091470:intron 35.0%
!!! TCCCTATTTTTAAGGTTCCT+TGG + chr1_2:73601066-73601085 None:intergenic 35.0%
! AGTTTTCCCAAAGAAAATGG+TGG + chr1_2:73601143-73601162 None:intergenic 35.0%
ACACACCCTTAGTTTAATGA+AGG - chr1_2:73601282-73601301 Msa0091470:intron 35.0%
! GTTATGGACTTTTACAGCTA+AGG - chr1_2:73601374-73601393 Msa0091470:intron 35.0%
!! AATCATCTTTAGTCTTGGGA+TGG - chr1_2:73601762-73601781 Msa0091470:CDS 35.0%
CATCAAGTATCTCACATCAT+AGG + chr1_2:73601880-73601899 None:intergenic 35.0%
CTATGATGTGAGATACTTGA+TGG - chr1_2:73601878-73601897 Msa0091470:CDS 35.0%
! ATGTGAGATACTTGATGGTA+TGG - chr1_2:73601883-73601902 Msa0091470:CDS 35.0%
GTTACATTGCCATCAATTTC+AGG - chr1_2:73601909-73601928 Msa0091470:CDS 35.0%
TAGGAAAGTCCTGAAATTGA+TGG + chr1_2:73601921-73601940 None:intergenic 35.0%
AAAACAAGTGAGTGAGTGAG+TGG - chr1_2:73594130-73594149 Msa0091470:three_prime_UTR 40.0%
AAAAGCAGTGAAAGCGAAAG+AGG + chr1_2:73594579-73594598 None:intergenic 40.0%
GACACTGTGAATGAAGCTTA+TGG - chr1_2:73594640-73594659 Msa0091470:intron 40.0%
GACGAAAACTGCCTATGAAA+TGG - chr1_2:73594817-73594836 Msa0091470:intron 40.0%
TCCAAACAGACCCATTTCAT+AGG + chr1_2:73594831-73594850 None:intergenic 40.0%
GCTGTTCTGTGAGATTGTTT+GGG + chr1_2:73595058-73595077 None:intergenic 40.0%
AGCTGTTCTGTGAGATTGTT+TGG + chr1_2:73595059-73595078 None:intergenic 40.0%
ACATAAGGCCTGTTTGGATT+AGG + chr1_2:73595112-73595131 None:intergenic 40.0%
CTTATGACATAAGGCCTGTT+TGG + chr1_2:73595118-73595137 None:intergenic 40.0%
!! GAGAGTGTTCATTGTGCAAA+TGG - chr1_2:73595306-73595325 Msa0091470:intron 40.0%
CAGCACGAATACTACAGTAT+CGG - chr1_2:73595723-73595742 Msa0091470:intron 40.0%
TATTCTTAGACCTGACAAGG+TGG - chr1_2:73596034-73596053 Msa0091470:intron 40.0%
ATTCTTAGACCTGACAAGGT+GGG - chr1_2:73596035-73596054 Msa0091470:intron 40.0%
ATCAGCCAGAAACTAATGTC+CGG + chr1_2:73596273-73596292 None:intergenic 40.0%
GCAGCTTCAGAAAAGAATGA+AGG - chr1_2:73596439-73596458 Msa0091470:intron 40.0%
!! CACCTTGTCTTGTTTCAACA+TGG - chr1_2:73596520-73596539 Msa0091470:intron 40.0%
GGCGAAAAACACAAGGAAAT+TGG + chr1_2:73596605-73596624 None:intergenic 40.0%
! TTTAAGACCTTCTTCAGGCT+TGG + chr1_2:73596917-73596936 None:intergenic 40.0%
TTCTTATTCCCCACAGAGAA+AGG - chr1_2:73597076-73597095 Msa0091470:intron 40.0%
TTTGCGTTACCTTTCTCTGT+GGG + chr1_2:73597088-73597107 None:intergenic 40.0%
ATTTGCGTTACCTTTCTCTG+TGG + chr1_2:73597089-73597108 None:intergenic 40.0%
GTTCACTGTATAAACTGCGT+TGG + chr1_2:73597361-73597380 None:intergenic 40.0%
GTTTATCACCTTCCATCTGT+TGG - chr1_2:73597610-73597629 Msa0091470:intron 40.0%
CCACTTTCAAGACTTCTTAG+CGG + chr1_2:73597640-73597659 None:intergenic 40.0%
AAGAAGTCTTGAAAGTGGTC+AGG - chr1_2:73597642-73597661 Msa0091470:intron 40.0%
TCATAGTCATAAACAGAGGG+AGG + chr1_2:73597763-73597782 None:intergenic 40.0%
TCCTATTGTTCTCAGGTTCT+CGG - chr1_2:73598027-73598046 Msa0091470:CDS 40.0%
! CGAGCTTCACAAGATCTTTT+CGG + chr1_2:73598137-73598156 None:intergenic 40.0%
AAAGATCTTGTGAAGCTCGA+TGG - chr1_2:73598138-73598157 Msa0091470:CDS 40.0%
CCGTAGCCATAAAGTAGTAA+TGG + chr1_2:73598171-73598190 None:intergenic 40.0%
GGTAAACCTTTCTCTGTCTT+AGG - chr1_2:73598362-73598381 Msa0091470:intron 40.0%
TATGTTCCCTCTGTGGTATA+TGG - chr1_2:73598547-73598566 Msa0091470:CDS 40.0%
ATGTTCCCTCTGTGGTATAT+GGG - chr1_2:73598548-73598567 Msa0091470:CDS 40.0%
! TTTTAGTCAGCCTGTTCCTT+TGG - chr1_2:73598578-73598597 Msa0091470:CDS 40.0%
TGCAAAACTTCTGCAACCAA+AGG + chr1_2:73598597-73598616 None:intergenic 40.0%
GCATATCTGTGGACAATTTG+AGG + chr1_2:73598692-73598711 None:intergenic 40.0%
! ATCCCAGTTTCAAGTCATCA+AGG - chr1_2:73598716-73598735 Msa0091470:intron 40.0%
! AGCCTTGATGACTTGAAACT+GGG + chr1_2:73598721-73598740 None:intergenic 40.0%
! AAGCCTTGATGACTTGAAAC+TGG + chr1_2:73598722-73598741 None:intergenic 40.0%
AGGCTTTCATTGTTAGATCG+AGG - chr1_2:73598736-73598755 Msa0091470:intron 40.0%
ACAGCAGCCTTGAATAAATC+CGG + chr1_2:73598976-73598995 None:intergenic 40.0%
!! AACATCCACAAAAGGTACTC+CGG + chr1_2:73599001-73599020 None:intergenic 40.0%
GTTGTCACAACATCCACAAA+AGG + chr1_2:73599009-73599028 None:intergenic 40.0%
! CGTTTTCTTGTGCTTCCTAA+AGG + chr1_2:73599228-73599247 None:intergenic 40.0%
!! CTGTTAGGGGAGTATTCATT+TGG + chr1_2:73599300-73599319 None:intergenic 40.0%
GTCAACCAAGTCATCTCATA+TGG + chr1_2:73599536-73599555 None:intergenic 40.0%
! TGTCACTTAATATGGGACAG+AGG - chr1_2:73599754-73599773 Msa0091470:intron 40.0%
GTCACTTAATATGGGACAGA+GGG - chr1_2:73599755-73599774 Msa0091470:intron 40.0%
AATACAGCAGTAACATGCCA+GGG + chr1_2:73599864-73599883 None:intergenic 40.0%
TAATACAGCAGTAACATGCC+AGG + chr1_2:73599865-73599884 None:intergenic 40.0%
ACTCACATACTTAACTCGGA+AGG + chr1_2:73600185-73600204 None:intergenic 40.0%
CCCATTCCTACAGTAACATA+AGG + chr1_2:73600318-73600337 None:intergenic 40.0%
AAGTAGAATTCCTCCTTCCT+AGG + chr1_2:73600346-73600365 None:intergenic 40.0%
CTCTGTAAGGAATGGTTACT+AGG - chr1_2:73600475-73600494 Msa0091470:CDS 40.0%
CCAGCTGTAACAAGAATATG+TGG + chr1_2:73600562-73600581 None:intergenic 40.0%
CCACATATTCTTGTTACAGC+TGG - chr1_2:73600559-73600578 Msa0091470:CDS 40.0%
TGGTAAGCATACCTGATTCT+TGG - chr1_2:73600588-73600607 Msa0091470:CDS 40.0%
GTTCAGAATACAGAACACGT+GGG + chr1_2:73600709-73600728 None:intergenic 40.0%
! AATTTTGCCACGAACTTTGC+AGG + chr1_2:73600731-73600750 None:intergenic 40.0%
CAAAGTTCGTGGCAAAATTG+AGG - chr1_2:73600732-73600751 Msa0091470:intron 40.0%
!! TTTAAATGTGAGCTTGGTGC+TGG - chr1_2:73600785-73600804 Msa0091470:intron 40.0%
!! TGCTGGACATTTTTCGAAGT+CGG - chr1_2:73600802-73600821 Msa0091470:intron 40.0%
! TGGGAGAAATGGGAAGTTTT+AGG - chr1_2:73600921-73600940 Msa0091470:intron 40.0%
! GGGAGAAATGGGAAGTTTTA+GGG - chr1_2:73600922-73600941 Msa0091470:intron 40.0%
! GGGAAAACTTTTCTATTCCC+AGG - chr1_2:73601154-73601173 Msa0091470:intron 40.0%
! TCCCAGGAACATTTTATACC+CGG - chr1_2:73601170-73601189 Msa0091470:intron 40.0%
!! CTAGGAAGCATCTTAGAAGA+TGG + chr1_2:73601448-73601467 None:intergenic 40.0%
!! CATCTTCTAAGATGCTTCCT+AGG - chr1_2:73601446-73601465 Msa0091470:intron 40.0%
CTGTGAAGAGATGGAATGAT+TGG - chr1_2:73601799-73601818 Msa0091470:CDS 40.0%
!! TGCTGGTTTCACTTAAGCTA+TGG + chr1_2:73601830-73601849 None:intergenic 40.0%
AGGCTTAGAAGTTAGAACCA+GGG + chr1_2:73601860-73601879 None:intergenic 40.0%
TAGGCTTAGAAGTTAGAACC+AGG + chr1_2:73601861-73601880 None:intergenic 40.0%
AGGAAGAGAAAGAGTGAGGA+CGG + chr1_2:73594283-73594302 None:intergenic 45.0%
TGAGACTGTGACAGAGATTG+CGG + chr1_2:73594360-73594379 None:intergenic 45.0%
GAAGAAGGTCGAGCACAAAA+TGG - chr1_2:73594404-73594423 Msa0091470:exon 45.0%
! ATAGGAAAGCACATCGGGAT+CGG + chr1_2:73594487-73594506 None:intergenic 45.0%
! ACGGAGATAGGAAAGCACAT+CGG + chr1_2:73594493-73594512 None:intergenic 45.0%
! GATACCTGACATGACGGAAT+CGG + chr1_2:73594532-73594551 None:intergenic 45.0%
GCCTATGAAATGGGTCTGTT+TGG - chr1_2:73594827-73594846 Msa0091470:intron 45.0%
GTTCTCTTAAACAGTGTCGC+AGG - chr1_2:73595150-73595169 Msa0091470:intron 45.0%
AACAGTGTAACGTGCTGAGT+AGG - chr1_2:73595348-73595367 Msa0091470:intron 45.0%
TAATAAGGCCCTTTGCGTAC+GGG + chr1_2:73595546-73595565 None:intergenic 45.0%
GTAATAAGGCCCTTTGCGTA+CGG + chr1_2:73595547-73595566 None:intergenic 45.0%
!! GGCATGGTGTCATTAACAGA+TGG + chr1_2:73595645-73595664 None:intergenic 45.0%
GTTAATGACACCATGCCTAC+AGG - chr1_2:73595648-73595667 Msa0091470:intron 45.0%
!! TCCTCCGGAGCATGTTATTT+TGG - chr1_2:73595680-73595699 Msa0091470:intron 45.0%
TCCAAAATAACATGCTCCGG+AGG + chr1_2:73595684-73595703 None:intergenic 45.0%
GCATATGCAGAAGACACCAA+AGG - chr1_2:73595882-73595901 Msa0091470:intron 45.0%
ATCGAGACTCAAGCTCCAAT+TGG - chr1_2:73595936-73595955 Msa0091470:intron 45.0%
ACATCAAACCTTGAATGGGC+TGG - chr1_2:73595978-73595997 Msa0091470:intron 45.0%
TTTCAATCTGCAGCCGAAAC+TGG - chr1_2:73596225-73596244 Msa0091470:intron 45.0%
! CAAAGCCGGACATTAGTTTC+TGG - chr1_2:73596265-73596284 Msa0091470:intron 45.0%
GAAGTGAGGCGAAAAACACA+AGG + chr1_2:73596612-73596631 None:intergenic 45.0%
GCTAACGCCTTAAGTGATAC+AGG - chr1_2:73596729-73596748 Msa0091470:intron 45.0%
AGCCATGCCTGTATCACTTA+AGG + chr1_2:73596739-73596758 None:intergenic 45.0%
TCTTGTTCTCGGAAGCTTCA+AGG + chr1_2:73596834-73596853 None:intergenic 45.0%
GATGTTTCCAAGCCTGAAGA+AGG - chr1_2:73596907-73596926 Msa0091470:intron 45.0%
!! GTTTTGACACAACGTGTGGA+TGG - chr1_2:73596937-73596956 Msa0091470:intron 45.0%
TTGCGTTACCTTTCTCTGTG+GGG + chr1_2:73597087-73597106 None:intergenic 45.0%
!! CGTGCTTGGCTTTTGAATGT+GGG - chr1_2:73597173-73597192 Msa0091470:CDS 45.0%
!! GTGCTTGGCTTTTGAATGTG+GGG - chr1_2:73597174-73597193 Msa0091470:CDS 45.0%
! CTTTTGAATGTGGGGTCACT+GGG - chr1_2:73597182-73597201 Msa0091470:CDS 45.0%
CCGCTAAGAAGTCTTGAAAG+TGG - chr1_2:73597637-73597656 Msa0091470:intron 45.0%
AAGTCTTGAAAGTGGTCAGG+TGG - chr1_2:73597645-73597664 Msa0091470:intron 45.0%
TCCGAGAACCTGAGAACAAT+AGG + chr1_2:73598031-73598050 None:intergenic 45.0%
TATTGTTCTCAGGTTCTCGG+AGG - chr1_2:73598030-73598049 Msa0091470:CDS 45.0%
AATACGTCACTGAAAGGCAG+TGG - chr1_2:73598067-73598086 Msa0091470:CDS 45.0%
ATACGTCACTGAAAGGCAGT+GGG - chr1_2:73598068-73598087 Msa0091470:CDS 45.0%
! TTATGGCTACGGGTCTTATG+AGG - chr1_2:73598179-73598198 Msa0091470:CDS 45.0%
ACTTCTGCAACCAAAGGAAC+AGG + chr1_2:73598591-73598610 None:intergenic 45.0%
! TGTGGACAATTTGAGGTCAC+TGG + chr1_2:73598685-73598704 None:intergenic 45.0%
CTGGGATCTATGCATATCTG+TGG + chr1_2:73598703-73598722 None:intergenic 45.0%
GTTATAGCTCATATACGCGG+AGG - chr1_2:73598769-73598788 Msa0091470:intron 45.0%
! TGCATAAATGGCAGAAGTGC+TGG - chr1_2:73598916-73598935 Msa0091470:intron 45.0%
!! GCATAAATGGCAGAAGTGCT+GGG - chr1_2:73598917-73598936 Msa0091470:intron 45.0%
!! CATAAATGGCAGAAGTGCTG+GGG - chr1_2:73598918-73598937 Msa0091470:intron 45.0%
!! ATAAATGGCAGAAGTGCTGG+GGG - chr1_2:73598919-73598938 Msa0091470:intron 45.0%
TTATTCAAGGCTGCTGTTGC+CGG - chr1_2:73598979-73598998 Msa0091470:intron 45.0%
TGTCACTGCCAAAGATGCAT+TGG - chr1_2:73599264-73599283 Msa0091470:CDS 45.0%
CCAAGTCATCTCATATGGGA+CGG + chr1_2:73599531-73599550 None:intergenic 45.0%
AGAAATCACAGCTACATCCC+TGG - chr1_2:73599844-73599863 Msa0091470:intron 45.0%
AGCATACCTGATTCTTGGCT+CGG - chr1_2:73600593-73600612 Msa0091470:CDS 45.0%
ATAGTTCCGAGCCAAGAATC+AGG + chr1_2:73600602-73600621 None:intergenic 45.0%
GGTTCAGAATACAGAACACG+TGG + chr1_2:73600710-73600729 None:intergenic 45.0%
TTCTGAACCTGCAAAGTTCG+TGG - chr1_2:73600721-73600740 Msa0091470:intron 45.0%
!! GCTGGACATTTTTCGAAGTC+GGG - chr1_2:73600803-73600822 Msa0091470:intron 45.0%
!! GACATTTTTCGAAGTCGGGA+AGG - chr1_2:73600807-73600826 Msa0091470:intron 45.0%
TTTGGTTACGGTGGGAGAAA+TGG - chr1_2:73600910-73600929 Msa0091470:intron 45.0%
TTGGTTACGGTGGGAGAAAT+GGG - chr1_2:73600911-73600930 Msa0091470:intron 45.0%
CCCGGGTATAAAATGTTCCT+GGG + chr1_2:73601174-73601193 None:intergenic 45.0%
! CCCAGGAACATTTTATACCC+GGG - chr1_2:73601171-73601190 Msa0091470:intron 45.0%
TCCCGGGTATAAAATGTTCC+TGG + chr1_2:73601175-73601194 None:intergenic 45.0%
! AAGGACCCACGCTTTGTTAA+TGG - chr1_2:73602013-73602032 Msa0091470:five_prime_UTR 45.0%
GGATGCCATTAACAAAGCGT+GGG + chr1_2:73602021-73602040 None:intergenic 45.0%
TGGATGCCATTAACAAAGCG+TGG + chr1_2:73602022-73602041 None:intergenic 45.0%
!!! GTAATTTTTATTTTATTTAT+TGG + chr1_2:73594187-73594206 None:intergenic 5.0%
!! AAATATTTAATAAAACTATA+AGG - chr1_2:73597903-73597922 Msa0091470:intron 5.0%
!! ATTACTATTATAATTATTAT+AGG - chr1_2:73597948-73597967 Msa0091470:intron 5.0%
!!! GTAATTTTATTTATATAATT+TGG - chr1_2:73601655-73601674 Msa0091470:CDS 5.0%
AAGTGAGTGAGTGAGTGGAG+TGG - chr1_2:73594135-73594154 Msa0091470:three_prime_UTR 50.0%
GTGAGGACGGAAACAGTTAG+TGG + chr1_2:73594270-73594289 None:intergenic 50.0%
GATCGGAGCGAGAATCATCA+CGG + chr1_2:73594470-73594489 None:intergenic 50.0%
! CGGAGATAGGAAAGCACATC+GGG + chr1_2:73594492-73594511 None:intergenic 50.0%
!! TACACCGATTCCGTCATGTC+AGG - chr1_2:73594525-73594544 Msa0091470:intron 50.0%
ATCCACGCAACTTGCATGTG+TGG - chr1_2:73594617-73594636 Msa0091470:intron 50.0%
TCCACGCAACTTGCATGTGT+GGG - chr1_2:73594618-73594637 Msa0091470:intron 50.0%
CTGACAAGAGGCTCTCCAAT+TGG + chr1_2:73595954-73595973 None:intergenic 50.0%
CATCATCACCAGCCCATTCA+AGG + chr1_2:73595989-73596008 None:intergenic 50.0%
AGGAGAATTCCCACCTTGTC+AGG + chr1_2:73596047-73596066 None:intergenic 50.0%
CGCCTTAAGTGATACAGGCA+TGG - chr1_2:73596734-73596753 Msa0091470:intron 50.0%
!! GCGTGCTTGGCTTTTGAATG+TGG - chr1_2:73597172-73597191 Msa0091470:CDS 50.0%
! GCTTTTGAATGTGGGGTCAC+TGG - chr1_2:73597181-73597200 Msa0091470:CDS 50.0%
CTTAGCGGTTCACCAACAGA+TGG + chr1_2:73597625-73597644 None:intergenic 50.0%
CAGGCTCCTAAGACAGAGAA+AGG + chr1_2:73598371-73598390 None:intergenic 50.0%
TAGCGCCCATATACCACAGA+GGG + chr1_2:73598556-73598575 None:intergenic 50.0%
ATAGCGCCCATATACCACAG+AGG + chr1_2:73598557-73598576 None:intergenic 50.0%
ATAGCTCATATACGCGGAGG+TGG - chr1_2:73598772-73598791 Msa0091470:intron 50.0%
TATACGCGGAGGTGGTGAAA+TGG - chr1_2:73598780-73598799 Msa0091470:intron 50.0%
ATACGCGGAGGTGGTGAAAT+GGG - chr1_2:73598781-73598800 Msa0091470:intron 50.0%
GGAGGCAGTGGTATGAGAAT+GGG - chr1_2:73598803-73598822 Msa0091470:intron 50.0%
!! AGTGCTGGGGGTTTGCTAAT+TGG - chr1_2:73598931-73598950 Msa0091470:intron 50.0%
!! TGTTGCCGGAGTACCTTTTG+TGG - chr1_2:73598993-73599012 Msa0091470:intron 50.0%
GTCATCTCATATGGGACGGA+GGG + chr1_2:73599527-73599546 None:intergenic 50.0%
AGTCATCTCATATGGGACGG+AGG + chr1_2:73599528-73599547 None:intergenic 50.0%
CCGTCCCATATGAGATGACT+TGG - chr1_2:73599528-73599547 Msa0091470:intron 50.0%
CCAGCAGTGTGACAGTGAAT+GGG + chr1_2:73599808-73599827 None:intergenic 50.0%
TGTAGGAATGGGGTGATCCT+AGG - chr1_2:73600326-73600345 Msa0091470:intron 50.0%
CGTGGGTCTACAGAATGTAC+AGG + chr1_2:73600692-73600711 None:intergenic 50.0%
GTCTTGGGATGGCTAAAGTG+TGG - chr1_2:73601773-73601792 Msa0091470:CDS 50.0%
GTGTGGATGCTGTGAAGAGA+TGG - chr1_2:73601790-73601809 Msa0091470:CDS 50.0%
GAAACCAGCAGCATATACCC+TGG - chr1_2:73601840-73601859 Msa0091470:CDS 50.0%
AGAACCAGGGTATATGCTGC+TGG + chr1_2:73601847-73601866 None:intergenic 50.0%
AGTGAGTGAGTGGAGTGGAG+TGG - chr1_2:73594140-73594159 Msa0091470:three_prime_UTR 55.0%
GAGGTGAAGTCGTCATCGGA+CGG + chr1_2:73594338-73594357 None:intergenic 55.0%
TGCGGAGGTGAAGTCGTCAT+CGG + chr1_2:73594342-73594361 None:intergenic 55.0%
GACTGTGACAGAGATTGCGG+AGG + chr1_2:73594357-73594376 None:intergenic 55.0%
TCATTCTCCGCTTCCTCCTC+CGG - chr1_2:73594377-73594396 Msa0091470:three_prime_UTR 55.0%
TCCCACACATGCAAGTTGCG+TGG + chr1_2:73594622-73594641 None:intergenic 55.0%
ATATCGGCACCCGTACGCAA+AGG - chr1_2:73595534-73595553 Msa0091470:intron 55.0%
TATCGGCACCCGTACGCAAA+GGG - chr1_2:73595535-73595554 Msa0091470:intron 55.0%
AGCATCAGGTCCTGTAGGCA+TGG + chr1_2:73595661-73595680 None:intergenic 55.0%
TACAGGACCTGATGCTCCTC+CGG - chr1_2:73595665-73595684 Msa0091470:intron 55.0%
CAGGCATGGCTTCATGCGTT+AGG - chr1_2:73596748-73596767 Msa0091470:intron 55.0%
GACACTACTGTCAGCCATCG+TGG - chr1_2:73596964-73596983 Msa0091470:intron 55.0%
GCGGTTCACCAACAGATGGA+AGG + chr1_2:73597621-73597640 None:intergenic 55.0%
TACGCGGAGGTGGTGAAATG+GGG - chr1_2:73598782-73598801 Msa0091470:intron 55.0%
GGGAGGCAGTGGTATGAGAA+TGG - chr1_2:73598802-73598821 Msa0091470:intron 55.0%
!! GCTGGGGGTTTGCTAATTGG+TGG - chr1_2:73598934-73598953 Msa0091470:intron 55.0%
CATATGGGACGGAGGGAGTA+AGG + chr1_2:73599520-73599539 None:intergenic 55.0%
CCCATTCACTGTCACACTGC+TGG - chr1_2:73599805-73599824 Msa0091470:intron 55.0%
GCCAGCAGTGTGACAGTGAA+TGG + chr1_2:73599809-73599828 None:intergenic 55.0%
GGAATGGGGTGATCCTAGGA+AGG - chr1_2:73600330-73600349 Msa0091470:intron 55.0%
ATGGGGTGATCCTAGGAAGG+AGG - chr1_2:73600333-73600352 Msa0091470:intron 55.0%
!! AACGCGGCGGTGGTGGAAAA+AGG + chr1_2:73594303-73594322 None:intergenic 60.0%
GTGAAGTCGTCATCGGACGG+CGG + chr1_2:73594335-73594354 None:intergenic 60.0%
TGCTCGACCTTCTTCGCCAC+CGG + chr1_2:73594399-73594418 None:intergenic 60.0%
!! GGAGGAGCATCAGGTCCTGT+AGG + chr1_2:73595666-73595685 None:intergenic 60.0%
!! ACATGCTCCGGAGGAGCATC+AGG + chr1_2:73595675-73595694 None:intergenic 60.0%
CAGTGGGCACGTGCTTCAGA+TGG - chr1_2:73598084-73598103 Msa0091470:CDS 60.0%
GTGGTGAAATGGGGAGGCAG+TGG - chr1_2:73598791-73598810 Msa0091470:intron 60.0%
TGGGACGGAGGGAGTAAGGA+AGG + chr1_2:73599516-73599535 None:intergenic 60.0%
ACGGCGGTGGTGAGAGAACG+CGG + chr1_2:73594319-73594338 None:intergenic 65.0%
AAGTCGTCATCGGACGGCGG+TGG + chr1_2:73594332-73594351 None:intergenic 65.0%
TTCTCCGCTTCCTCCTCCGG+TGG - chr1_2:73594380-73594399 Msa0091470:three_prime_UTR 65.0%
TTCGCCACCGGAGGAGGAAG+CGG + chr1_2:73594387-73594406 None:intergenic 65.0%
TCCTCCTCCGGTGGCGAAGA+AGG - chr1_2:73594389-73594408 Msa0091470:three_prime_UTR 65.0%
ACCTTCTTCGCCACCGGAGG+AGG + chr1_2:73594393-73594412 None:intergenic 65.0%
TCGACCTTCTTCGCCACCGG+AGG + chr1_2:73594396-73594415 None:intergenic 65.0%
GCGGAGGTGGTGAAATGGGG+AGG - chr1_2:73598785-73598804 Msa0091470:intron 65.0%
GTGAGAGAACGCGGCGGTGG+TGG + chr1_2:73594310-73594329 None:intergenic 70.0%
GTGGTGAGAGAACGCGGCGG+TGG + chr1_2:73594313-73594332 None:intergenic 70.0%
GCGGTGGTGAGAGAACGCGG+CGG + chr1_2:73594316-73594335 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 73594053 73602142 73594053 ID=Msa0091470;Name=Msa0091470
chr1_2 mRNA 73594053 73602142 73594053 ID=Msa0091470-mRNA-1;Parent=Msa0091470;Name=Msa0091470-mRNA-1;_AED=0.15;_eAED=0.15;_QI=139|0.90|0.91|1|0.90|0.83|12|369|787
chr1_2 exon 73594053 73594497 73594053 ID=Msa0091470-mRNA-1:exon:25873;Parent=Msa0091470-mRNA-1
chr1_2 exon 73595367 73595490 73595367 ID=Msa0091470-mRNA-1:exon:25872;Parent=Msa0091470-mRNA-1
chr1_2 exon 73595606 73595654 73595606 ID=Msa0091470-mRNA-1:exon:25871;Parent=Msa0091470-mRNA-1
chr1_2 exon 73595799 73595864 73595799 ID=Msa0091470-mRNA-1:exon:25870;Parent=Msa0091470-mRNA-1
chr1_2 exon 73597124 73597489 73597124 ID=Msa0091470-mRNA-1:exon:25869;Parent=Msa0091470-mRNA-1
chr1_2 exon 73597995 73598225 73597995 ID=Msa0091470-mRNA-1:exon:25868;Parent=Msa0091470-mRNA-1
chr1_2 exon 73598373 73598664 73598373 ID=Msa0091470-mRNA-1:exon:25867;Parent=Msa0091470-mRNA-1
chr1_2 exon 73599098 73599444 73599098 ID=Msa0091470-mRNA-1:exon:25866;Parent=Msa0091470-mRNA-1
chr1_2 exon 73600143 73600337 73600143 ID=Msa0091470-mRNA-1:exon:25865;Parent=Msa0091470-mRNA-1
chr1_2 exon 73600440 73600723 73600440 ID=Msa0091470-mRNA-1:exon:25864;Parent=Msa0091470-mRNA-1
chr1_2 exon 73601649 73602033 73601649 ID=Msa0091470-mRNA-1:exon:25863;Parent=Msa0091470-mRNA-1
chr1_2 exon 73602055 73602142 73602055 ID=Msa0091470-mRNA-1:exon:25862;Parent=Msa0091470-mRNA-1
chr1_2 five_prime_UTR 73602055 73602142 73602055 ID=Msa0091470-mRNA-1:five_prime_utr;Parent=Msa0091470-mRNA-1
chr1_2 five_prime_UTR 73601983 73602033 73601983 ID=Msa0091470-mRNA-1:five_prime_utr;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73601649 73601982 73601649 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73600440 73600723 73600440 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73600143 73600337 73600143 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73599098 73599444 73599098 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73598373 73598664 73598373 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73597995 73598225 73597995 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73597124 73597489 73597124 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73595799 73595864 73595799 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73595606 73595654 73595606 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73595367 73595490 73595367 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 CDS 73594422 73594497 73594422 ID=Msa0091470-mRNA-1:cds;Parent=Msa0091470-mRNA-1
chr1_2 three_prime_UTR 73594053 73594421 73594053 ID=Msa0091470-mRNA-1:three_prime_utr;Parent=Msa0091470-mRNA-1
Gene Sequence

>Msa0091470

ATGCTAAATCAAAATCTTGTTCGCTTAAACATTAGTCGATTATTCTGCTGCATTCCACTAACTGTTTCCGTCCTCACTCTTTCTCTTCCTTTTTCCACCACCGCCGCGTTCTCTCACCACCGCCGTCCGATGACGACTTCACCTCCGCAATCTCTGTCACAGTCTCATTCTCCGCTTCCTCCTCCGGTGGCGAAGAAGGTCGAGCACAAAATGGAGCTTTTCAATGATGTTAGAATCGATAACTACTACTGGCTCCGTGATGATTCTCGCTCCGATCCCGATGTGCTTTCCTATCTCCGTCAAGAAAATGATTACACCGATTCCGTCATGTCAGGAACCAAAAAAATTGAAGATAAGCTTTTTGCTGAGATAAAAGGAAGGATAAAGGAGGAAGATATATCGGCACCCGTACGCAAAGGGCCTTATTACTATTATAAGAAAACATTGGAAGGAAAGGAGTATGTTCAATATTGTAGACGCCTTATATCTGATAACCAAAAGGTTCCATCTGTTAATGACACCATGCCTACAGGACCTGATGCTCCTCCGGAGCATGTTATTTTGGATGAGAATATCAAGGCACAACAGCACGAATACTACAGTATCGGTACTTTTAAGGTTAGCCCAAATAACAAGTTAGTAGCATATGCAGAAGACACCAAAGGAGATGAAATATATACTGTTTATGTCATGAATATCGAGACTCAAGCTCCAATTGGAGAGCCTCTTGTCAGTGTAACATCAAACCTTGAATGGGCTGGTGATGATGCTCTAGTTTATGTAACAATGGATAATATTCTTAGACCTGACAAGGCATGGCTTCATGCGTTAGGAACAAAACAATCAAAAGATACTTGTCTTTACGAGGAAAAAGATGATACGTTTTCTCTTGACCTTGAAGCTTCCGAGAACAAGAAATATTTGTTTGTTGCATCGGAAAGTAAAACTACAAGGTTCAATTTTTATCTTGATGTTTCCAAGCCTGAAGAAGGTCTTAAAGTTTTGACACAACGTGTGGATGGTATTGACACTACTGTCAGCCATCGTGGAGATCATTTCTTTATTAAGCGGAGAAGTGATCAATTTTTCAATTCAGAAGTTGTAGCATGTGCTGTTAACAACACCTCTTCAACTACAGTTCTTATTCCCCACAGAGAAAGTGTGAAAATTCAGGAGATACAACTTTTTAGCGATCATCTTGTTGCATATGAGAGAGAAAATGGTCTACCAAAAATAATTGTTTATCACCTTCCATCTGTTGGTGAACCGCTAAGAAGTCTTGAAAGTGGTCAGGTGGTTAGTTTTATTGATCCAGTATACTATGTGGATTCTTCAGAGTCAGAGTTTTCGTCAAGTATTTTACGATTTTCATATAGCTCATTGAAGACGCCTCCCTCTGTTTATGACTATGATATGAAGGCTGGAATTTCAGTTTTGAAGAAGATTGACTCGGTTTTCCTCATTTCCTTGAGTTTTGTTCAATTGCTCTCTATACCTGTATTATTTGTCTCCTATTGTTCTCAGGTTCTCGGAGGTTTTGATGCAACAAAATACGTCACTGAAAGGCAGTGGGCACGTGCTTCAGATGGAACTTTGATTCCCATGTCACTTGTATACCGAAAAGATCTTGTGAAGCTCGATGGATCAGATCCATTACTACTTTATGGCTACGGGTCTTATGAGATATGCATAGATCCCAGTTTCAAGTCATCAAGGCTTTCATTGTTAGATCGAGGTTTCATATATGTTATAGCTCATATACGCGGAGGTGGTGAAATGGGGAGGCAGTGGTATGAGAATGGGAAGCTGCTGAAGAAAAAGAACACTTTCACTGATTTTATTGCATGTGCTGAACATTTAATTGAAAAAAAATTCTGTTCCAAGGAAAGACTTTGCATAAATGGCAGAAGTGCTGGGGGTTTGCTAATTGGTGGAGTTCTTAATATGAGACCGGATTTATTCAAGGCTGCTGTTGCCGGAGTACCTTTTGTGGATGTTGTGACAACAATGCTTGATCCAACTATTCCTCTCACTACTTCCGAATGGGAGGAATGGGGTGATCCTAGGAAGGAGGAATTCTACTTCTACATGAAGTCATATTCCCCTGTTGATAATGTCAAAGCACAGAATTACCCACATATTCTTGTTACAGCTGGATTAAATGACCCACGTGTTCTGTATTCTGAACCTGCAAAGTTCGTGGCAAAATTGAGGGATATGAAAACTGATGATAACATACTGTTGTTTAAATGTGAGCTTGGTGCTGGACATTTTTCGAAGTCGGGAAGATTTGAGAAACTTCAGGAAGACGCCTTCACTTATACATTCTTCCTAAAGACTCTAAACATGACTAATCATCTTTAG
Protein sequence

>Msa0091470

MLNQNLVRLNISRLFCCIPLTVSVLTLSLPFSTTAAFSHHRRPMTTSPPQSLSQSHSPLPPPVAKKVEHKMELFNDVRIDNYYWLRDDSRSDPDVLSYLRQENDYTDSVMSGTKKIEDKLFAEIKGRIKEEDISAPVRKGPYYYYKKTLEGKEYVQYCRRLISDNQKVPSVNDTMPTGPDAPPEHVILDENIKAQQHEYYSIGTFKVSPNNKLVAYAEDTKGDEIYTVYVMNIETQAPIGEPLVSVTSNLEWAGDDALVYVTMDNILRPDKAWLHALGTKQSKDTCLYEEKDDTFSLDLEASENKKYLFVASESKTTRFNFYLDVSKPEEGLKVLTQRVDGIDTTVSHRGDHFFIKRRSDQFFNSEVVACAVNNTSSTTVLIPHRESVKIQEIQLFSDHLVAYERENGLPKIIVYHLPSVGEPLRSLESGQVVSFIDPVYYVDSSESEFSSSILRFSYSSLKTPPSVYDYDMKAGISVLKKIDSVFLISLSFVQLLSIPVLFVSYCSQVLGGFDATKYVTERQWARASDGTLIPMSLVYRKDLVKLDGSDPLLLYGYGSYEICIDPSFKSSRLSLLDRGFIYVIAHIRGGGEMGRQWYENGKLLKKKNTFTDFIACAEHLIEKKFCSKERLCINGRSAGGLLIGGVLNMRPDLFKAAVAGVPFVDVVTTMLDPTIPLTTSEWEEWGDPRKEEFYFYMKSYSPVDNVKAQNYPHILVTAGLNDPRVLYSEPAKFVAKLRDMKTDDNILLFKCELGAGHFSKSGRFEKLQEDAFTYTFFLKTLNMTNHL*