Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035510 | XP_003625299.1 | 93.561 | 264 | 9 | 2 | 1 | 261 | 1 | 259 | 1.23e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035510 | G7KWA7 | 93.561 | 264 | 9 | 2 | 1 | 261 | 1 | 259 | 5.87e-175 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0685890 | Msa1035510 | 0.807264 | 5.503074e-50 | -8.615850e-47 |
| Msa0714030 | Msa1035510 | 0.824260 | 8.887195e-54 | -8.615850e-47 |
| Msa0714170 | Msa1035510 | 0.828924 | 6.859250e-55 | -8.615850e-47 |
| Msa0756470 | Msa1035510 | 0.802478 | 5.504983e-49 | -8.615850e-47 |
| Msa0783340 | Msa1035510 | 0.820490 | 6.674776e-53 | -8.615850e-47 |
| Msa0819440 | Msa1035510 | 0.854166 | 1.474965e-61 | -8.615850e-47 |
| Msa0835520 | Msa1035510 | 0.828661 | 7.942537e-55 | -8.615850e-47 |
| Msa0121800 | Msa1035510 | 0.819491 | 1.129743e-52 | -8.615850e-47 |
| Msa0166570 | Msa1035510 | 0.811493 | 6.810734e-51 | -8.615850e-47 |
| Msa0380650 | Msa1035510 | 0.806070 | 9.834076e-50 | -8.615850e-47 |
| Msa0430290 | Msa1035510 | 0.805075 | 1.590355e-49 | -8.615850e-47 |
| Msa1033790 | Msa1035510 | 0.828416 | 9.098592e-55 | -8.615850e-47 |
| Msa1035510 | Msa1075420 | 0.880982 | 3.502456e-70 | -8.615850e-47 |
| Msa1035510 | Msa1116550 | 0.893077 | 8.787387e-75 | -8.615850e-47 |
| Msa1035510 | Msa1163050 | 0.858395 | 8.485672e-63 | -8.615850e-47 |
| Msa1035510 | Msa1173000 | 0.852696 | 3.896247e-61 | -8.615850e-47 |
| Msa1035510 | Msa1261390 | 0.816837 | 4.501055e-52 | -8.615850e-47 |
| Msa1035510 | Msa1261420 | 0.835927 | 1.262100e-56 | -8.615850e-47 |
| Msa1035510 | Msa1287090 | -0.813595 | 2.363847e-51 | -8.615850e-47 |
| Msa1035510 | Msa1380720 | 0.800825 | 1.201465e-48 | -8.615850e-47 |
| Msa1035510 | Msa1388240 | 0.833789 | 4.357702e-56 | -8.615850e-47 |
| Msa1035510 | Msa1427370 | 0.851864 | 6.722994e-61 | -8.615850e-47 |
| Msa0267340 | Msa1035510 | 0.858913 | 5.942090e-63 | -8.615850e-47 |
| Msa0882430 | Msa1035510 | -0.811181 | 7.961430e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035510 | MtrunA17_Chr7g0258971 | 93.561 | 264 | 9 | 2 | 1 | 261 | 1 | 259 | 1.13e-178 | 491 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1035510 | AT2G41950.1 | 52.821 | 195 | 85 | 1 | 73 | 260 | 71 | 265 | 2.89e-68 | 212 |
Find 63 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTAAAATTTAGTAAAATTT+TGG | 0.022844 | 7_1:-71309376 | Msa1035510:three_prime_UTR |
| CGAAAAGTTGACATATTTAT+AGG | 0.230423 | 7_1:+71309312 | None:intergenic |
| AAGAACATCCTCAAGTTTAA+AGG | 0.259636 | 7_1:+71311184 | None:intergenic |
| TGATGAGAATTCATGGGTTT+TGG | 0.262199 | 7_1:-71311414 | Msa1035510:CDS |
| ATCCTTTCGAACACGCAATT+TGG | 0.268681 | 7_1:-71309538 | Msa1035510:three_prime_UTR |
| AATTTGGTTGGACTTTAATA+TGG | 0.269394 | 7_1:-71309522 | Msa1035510:three_prime_UTR |
| AGGTCAGAAATTACTACTTC+TGG | 0.282494 | 7_1:+71309685 | None:intergenic |
| TGAGGATGTTCTTGCTTCAT+TGG | 0.285239 | 7_1:-71311174 | Msa1035510:CDS |
| AGTTCAGGGAAATGGAATTA+AGG | 0.301525 | 7_1:+71311618 | None:intergenic |
| CTTTGATGTGGCTGAATTTG+TGG | 0.337260 | 7_1:-71309620 | Msa1035510:CDS |
| TTGTGGTTTGATTTGAAAAC+GGG | 0.341226 | 7_1:+71311658 | None:intergenic |
| GAAAAGTTGACATATTTATA+GGG | 0.373438 | 7_1:+71309313 | None:intergenic |
| GGAAAATTGATGAGAATTCA+TGG | 0.377763 | 7_1:-71311421 | Msa1035510:CDS |
| AAGAATTCATCGACAAAGAT+TGG | 0.377860 | 7_1:-71311493 | Msa1035510:CDS |
| TTCATGGTTGAAGAAATAAC+AGG | 0.383817 | 7_1:+71311737 | None:intergenic |
| ATTGACCGTATTATATCATC+TGG | 0.387173 | 7_1:-71311443 | Msa1035510:CDS |
| TGGTCAGTGCTTGACTATAC+TGG | 0.395973 | 7_1:-71311473 | Msa1035510:CDS |
| GAGTTTGTGGATTGTTTAGT+TGG | 0.406284 | 7_1:-71311374 | Msa1035510:CDS |
| AACTAACCAGGTGAACATTT+CGG | 0.410159 | 7_1:+71311149 | None:intergenic |
| TAAAATCCATGGTAACACTA+TGG | 0.412624 | 7_1:-71309410 | Msa1035510:three_prime_UTR |
| TGGTGGAATTTGCATGGTGG+TGG | 0.415264 | 7_1:+71311683 | None:intergenic |
| TTTAATTTGATTAGTATCTC+AGG | 0.419037 | 7_1:-71309443 | Msa1035510:three_prime_UTR |
| AAGTGGTTCTGAAGAGTTTG+TGG | 0.419196 | 7_1:-71311387 | Msa1035510:CDS |
| GATATAATACGGTCAATGTT+TGG | 0.441601 | 7_1:+71311449 | None:intergenic |
| TGCTTTGCCCTTTAAACTTG+AGG | 0.443940 | 7_1:-71311192 | Msa1035510:CDS |
| AGAACATCCTCAAGTTTAAA+GGG | 0.444786 | 7_1:+71311185 | None:intergenic |
| AGCTAAAGAAGATGAATTCA+TGG | 0.452626 | 7_1:+71311721 | None:intergenic |
| GAGATTTGATGATGATTTGA+GGG | 0.454324 | 7_1:+71311565 | None:intergenic |
| GGGTGGTGGAAAATGGGTTG+TGG | 0.455723 | 7_1:+71311641 | None:intergenic |
| TAAAGAAACACAACATCAAA+AGG | 0.463883 | 7_1:+71311224 | None:intergenic |
| GTTCAGGGAAATGGAATTAA+GGG | 0.464943 | 7_1:+71311619 | None:intergenic |
| TTCAGTATTTCTCTCCCTTG+TGG | 0.465559 | 7_1:+71309727 | None:intergenic |
| TTATAGGGACTAAAAGTTGA+AGG | 0.468975 | 7_1:+71309268 | None:intergenic |
| GGTCAGAAATTACTACTTCT+GGG | 0.473415 | 7_1:+71309686 | None:intergenic |
| GCTGAATTTGTGGATGAACC+TGG | 0.481622 | 7_1:-71309610 | Msa1035510:CDS |
| GTTGTGGTTTGATTTGAAAA+CGG | 0.484213 | 7_1:+71311657 | None:intergenic |
| TCAAGTTTAAAGGGCAAAGC+AGG | 0.503741 | 7_1:+71311194 | None:intergenic |
| TGAGATTTGATGATGATTTG+AGG | 0.510757 | 7_1:+71311564 | None:intergenic |
| GGGTGGTGGAATTTGCATGG+TGG | 0.512751 | 7_1:+71311680 | None:intergenic |
| AGCTGCTAATTCCTTTGATG+TGG | 0.512960 | 7_1:-71309632 | Msa1035510:CDS |
| GAAAATTGATGAGAATTCAT+GGG | 0.521184 | 7_1:-71311420 | Msa1035510:CDS |
| TTTCGAACACGCAATTTGGT+TGG | 0.524335 | 7_1:-71309534 | Msa1035510:three_prime_UTR |
| AACCAAATTGCGTGTTCGAA+AGG | 0.526692 | 7_1:+71309536 | None:intergenic |
| GATAATATTAAGTGTTGGCA+AGG | 0.531345 | 7_1:-71311278 | Msa1035510:CDS |
| TTTGTGGATTGTTTAGTTGG+TGG | 0.542847 | 7_1:-71311371 | Msa1035510:CDS |
| TTTGAGGGTTTGAAGTGAAG+TGG | 0.548659 | 7_1:+71311580 | None:intergenic |
| AAAACAGCTAAATAAAAGCC+AGG | 0.558912 | 7_1:+71309592 | None:intergenic |
| TTTCTTCAGGGATTGAAACT+GGG | 0.564494 | 7_1:+71311537 | None:intergenic |
| CACAAATTCAGCCACATCAA+AGG | 0.572163 | 7_1:+71309621 | None:intergenic |
| AATATGATAATATTAAGTGT+TGG | 0.576851 | 7_1:-71311283 | Msa1035510:CDS |
| TGGTGGTGGTGTGAGAATGA+AGG | 0.583844 | 7_1:+71311697 | None:intergenic |
| TATTAAGTGTTGGCAAGGAG+AGG | 0.585342 | 7_1:-71311273 | Msa1035510:CDS |
| TTGGCTCCGAAATGTTCACC+TGG | 0.591346 | 7_1:-71311155 | Msa1035510:intron |
| GCTTCCTCGTGTAAAATCCA+TGG | 0.594727 | 7_1:-71309421 | Msa1035510:three_prime_UTR |
| TAGCATCCATAGTGTTACCA+TGG | 0.611821 | 7_1:+71309404 | None:intergenic |
| TGTGGTTTGATTTGAAAACG+GGG | 0.613747 | 7_1:+71311659 | None:intergenic |
| TTCAGGGAAATGGAATTAAG+GGG | 0.628365 | 7_1:+71311620 | None:intergenic |
| TCATGGTTGAAGAAATAACA+GGG | 0.648096 | 7_1:+71311738 | None:intergenic |
| GTGGTTTGATTTGAAAACGG+GGG | 0.648806 | 7_1:+71311660 | None:intergenic |
| GTGATTATCAGTCATCCACA+AGG | 0.656212 | 7_1:-71309742 | Msa1035510:CDS |
| TTGACCGTATTATATCATCT+GGG | 0.656909 | 7_1:-71311442 | Msa1035510:CDS |
| TCAGGGAAATGGAATTAAGG+GGG | 0.657147 | 7_1:+71311621 | None:intergenic |
| TGATTATCAGTCATCCACAA+GGG | 0.725296 | 7_1:-71309741 | Msa1035510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTAAAATTTAGTAAAATTT+TGG | - | chr7_1:71311687-71311706 | Msa1035510:CDS | 10.0% |
| !! | AATATGATAATATTAAGTGT+TGG | - | chr7_1:71309780-71309799 | Msa1035510:intron | 15.0% |
| !! | TATTGAAATTGAACAATATT+TGG | - | chr7_1:71310184-71310203 | Msa1035510:intron | 15.0% |
| !! | ATTGAAATTGAACAATATTT+GGG | - | chr7_1:71310185-71310204 | Msa1035510:intron | 15.0% |
| !!! | CGATTTATTCTTTTTAATTT+TGG | - | chr7_1:71311277-71311296 | Msa1035510:CDS | 15.0% |
| !!! | GATTGTACTAATTTTTTTAT+GGG | - | chr7_1:71311710-71311729 | Msa1035510:CDS | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr7_1:71311813-71311832 | None:intergenic | 15.0% |
| !! | TTACTATTGTTCCTAAAAAA+TGG | - | chr7_1:71309813-71309832 | Msa1035510:intron | 20.0% |
| !!! | TTTTGTTGTTAGTTTAGTAT+TGG | - | chr7_1:71309958-71309977 | Msa1035510:intron | 20.0% |
| !!! | GATAACATTTTGTACTAAAT+AGG | - | chr7_1:71310109-71310128 | Msa1035510:intron | 20.0% |
| !!! | AATTTGTTCAAATTAAGCTA+TGG | - | chr7_1:71310308-71310327 | Msa1035510:intron | 20.0% |
| !! | ACAAAAATATTGTAAAACAG+CGG | + | chr7_1:71310350-71310369 | None:intergenic | 20.0% |
| !!! | TCAAATTCCTTTTTACTATT+AGG | - | chr7_1:71310435-71310454 | Msa1035510:intron | 20.0% |
| !!! | TTTTTCTAATTTGTGATGAT+AGG | + | chr7_1:71310669-71310688 | None:intergenic | 20.0% |
| !!! | TTTAATTTGATTAGTATCTC+AGG | - | chr7_1:71311620-71311639 | Msa1035510:CDS | 20.0% |
| !!! | GGATTGTACTAATTTTTTTA+TGG | - | chr7_1:71311709-71311728 | Msa1035510:CDS | 20.0% |
| !!! | TTATGGGTTAAATATGTTTT+TGG | - | chr7_1:71311726-71311745 | Msa1035510:exon | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | chr7_1:71311753-71311772 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr7_1:71311814-71311833 | None:intergenic | 20.0% |
| !!! | AAAATTGGATTTTGAGTTCA+GGG | + | chr7_1:71309462-71309481 | None:intergenic | 25.0% |
| !!! | AAAAATTGGATTTTGAGTTC+AGG | + | chr7_1:71309463-71309482 | None:intergenic | 25.0% |
| !! | TTTTCCCAGATGATATAATA+CGG | + | chr7_1:71309628-71309647 | None:intergenic | 25.0% |
| ! | GAAAATTGATGAGAATTCAT+GGG | - | chr7_1:71309643-71309662 | Msa1035510:CDS | 25.0% |
| ! | TAAAGAAACACAACATCAAA+AGG | + | chr7_1:71309842-71309861 | None:intergenic | 25.0% |
| ! | AGTTTCAATATGCAATGAAA+TGG | + | chr7_1:71310013-71310032 | None:intergenic | 25.0% |
| ! | TGAATATATGTGTTGTCAAT+TGG | - | chr7_1:71310268-71310287 | Msa1035510:intron | 25.0% |
| ! | AACTGGCATAATATATAAAC+TGG | + | chr7_1:71310461-71310480 | None:intergenic | 25.0% |
| ! | GTTTATATATTATGCCAGTT+TGG | - | chr7_1:71310461-71310480 | Msa1035510:intron | 25.0% |
| ! | TAAGATCTCATGAAATTAAC+AGG | + | chr7_1:71310576-71310595 | None:intergenic | 25.0% |
| !!! | TTTTTAAAACAGAGTCCAAA+AGG | - | chr7_1:71310848-71310867 | Msa1035510:intron | 25.0% |
| !!! | TTTTAAAACAGAGTCCAAAA+GGG | - | chr7_1:71310849-71310868 | Msa1035510:intron | 25.0% |
| !! | ATACTTACTACTCAAGTTTT+AGG | + | chr7_1:71311007-71311026 | None:intergenic | 25.0% |
| !! | TGAAACAAGAAATTGTTGTT+TGG | - | chr7_1:71311036-71311055 | Msa1035510:intron | 25.0% |
| ! | ACCTTATACATTTGATTATG+AGG | - | chr7_1:71311103-71311122 | Msa1035510:intron | 25.0% |
| ! | ATCTAGCAATGAAAAATGTA+TGG | + | chr7_1:71311154-71311173 | None:intergenic | 25.0% |
| !!! | TAATTTTGGTTTTGACATGT+AGG | - | chr7_1:71311291-71311310 | Msa1035510:CDS | 25.0% |
| !! | CTTTGTAAATGTGTTTTATC+AGG | + | chr7_1:71311405-71311424 | None:intergenic | 25.0% |
| ! | AATTTGGTTGGACTTTAATA+TGG | - | chr7_1:71311541-71311560 | Msa1035510:CDS | 25.0% |
| !! | TGATAGTTAGCTAGAATTTT+AGG | - | chr7_1:71311576-71311595 | Msa1035510:CDS | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | chr7_1:71311754-71311773 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+AGG | + | chr7_1:71311784-71311803 | None:intergenic | 25.0% |
| !! | AGTGTGTTTTTCAAAGATGA+GGG | + | chr7_1:71309295-71309314 | None:intergenic | 30.0% |
| TCATGGTTGAAGAAATAACA+GGG | + | chr7_1:71309328-71309347 | None:intergenic | 30.0% | |
| TTCATGGTTGAAGAAATAAC+AGG | + | chr7_1:71309329-71309348 | None:intergenic | 30.0% | |
| AGCTAAAGAAGATGAATTCA+TGG | + | chr7_1:71309345-71309364 | None:intergenic | 30.0% | |
| !! | TTGTGGTTTGATTTGAAAAC+GGG | + | chr7_1:71309408-71309427 | None:intergenic | 30.0% |
| !! | GTTGTGGTTTGATTTGAAAA+CGG | + | chr7_1:71309409-71309428 | None:intergenic | 30.0% |
| TTGAAGTGAAGTGGAAAAAT+TGG | + | chr7_1:71309477-71309496 | None:intergenic | 30.0% | |
| !! | GAGATTTGATGATGATTTGA+GGG | + | chr7_1:71309501-71309520 | None:intergenic | 30.0% |
| !! | TGAGATTTGATGATGATTTG+AGG | + | chr7_1:71309502-71309521 | None:intergenic | 30.0% |
| AAGAATTCATCGACAAAGAT+TGG | - | chr7_1:71309570-71309589 | Msa1035510:exon | 30.0% | |
| GATATAATACGGTCAATGTT+TGG | + | chr7_1:71309617-71309636 | None:intergenic | 30.0% | |
| ATTGACCGTATTATATCATC+TGG | - | chr7_1:71309620-71309639 | Msa1035510:CDS | 30.0% | |
| TTGACCGTATTATATCATCT+GGG | - | chr7_1:71309621-71309640 | Msa1035510:CDS | 30.0% | |
| GGAAAATTGATGAGAATTCA+TGG | - | chr7_1:71309642-71309661 | Msa1035510:CDS | 30.0% | |
| !! | TCATGACTCACTTTTGATAT+TGG | - | chr7_1:71309742-71309761 | Msa1035510:CDS | 30.0% |
| !! | GATAATATTAAGTGTTGGCA+AGG | - | chr7_1:71309785-71309804 | Msa1035510:intron | 30.0% |
| !!! | TCAAAAGGAGACCATTTTTT+AGG | + | chr7_1:71309827-71309846 | None:intergenic | 30.0% |
| AGAACATCCTCAAGTTTAAA+GGG | + | chr7_1:71309881-71309900 | None:intergenic | 30.0% | |
| AAGAACATCCTCAAGTTTAA+AGG | + | chr7_1:71309882-71309901 | None:intergenic | 30.0% | |
| ACAGATAAGAAAAACTAACC+AGG | + | chr7_1:71309929-71309948 | None:intergenic | 30.0% | |
| ATAGCAATACGATAATGTCA+CGG | + | chr7_1:71310167-71310186 | None:intergenic | 30.0% | |
| GAAATTGAACAATATTTGGG+TGG | - | chr7_1:71310188-71310207 | Msa1035510:intron | 30.0% | |
| TATGTGTTGTCAATTGGATA+TGG | - | chr7_1:71310274-71310293 | Msa1035510:intron | 30.0% | |
| ! | AAACTGGCCTAATAGTAAAA+AGG | + | chr7_1:71310445-71310464 | None:intergenic | 30.0% |
| ATCTCATGAAATTAACAGGT+AGG | + | chr7_1:71310572-71310591 | None:intergenic | 30.0% | |
| !!! | ACTCTGTTTTAAAAAGAGGT+CGG | + | chr7_1:71310843-71310862 | None:intergenic | 30.0% |
| !!! | TTGGACTCTGTTTTAAAAAG+AGG | + | chr7_1:71310847-71310866 | None:intergenic | 30.0% |
| ATTGCATAGTGTTTCATGAA+AGG | + | chr7_1:71310957-71310976 | None:intergenic | 30.0% | |
| GCCTCATAATCAAATGTATA+AGG | + | chr7_1:71311107-71311126 | None:intergenic | 30.0% | |
| CACAAGAAAATCCATTAAGT+TGG | + | chr7_1:71311129-71311148 | None:intergenic | 30.0% | |
| ! | GCTAGATTTTCATTGTGTTT+AGG | - | chr7_1:71311167-71311186 | Msa1035510:CDS | 30.0% |
| ! | GTAAATGTGTTTTATCAGGA+AGG | + | chr7_1:71311401-71311420 | None:intergenic | 30.0% |
| AAAACAGCTAAATAAAAGCC+AGG | + | chr7_1:71311474-71311493 | None:intergenic | 30.0% | |
| !!! | TAGCTGTTTTGATCAAATCT+AGG | - | chr7_1:71311484-71311503 | Msa1035510:CDS | 30.0% |
| TAAAATCCATGGTAACACTA+TGG | - | chr7_1:71311653-71311672 | Msa1035510:CDS | 30.0% | |
| TTATAGGGACTAAAAGTTGA+AGG | + | chr7_1:71311798-71311817 | None:intergenic | 30.0% | |
| !! | TGTGTTTTTCAAAGATGAGG+GGG | + | chr7_1:71309293-71309312 | None:intergenic | 35.0% |
| !! | GTGTGTTTTTCAAAGATGAG+GGG | + | chr7_1:71309294-71309313 | None:intergenic | 35.0% |
| !! | GAGTGTGTTTTTCAAAGATG+AGG | + | chr7_1:71309296-71309315 | None:intergenic | 35.0% |
| !! | TGTGGTTTGATTTGAAAACG+GGG | + | chr7_1:71309407-71309426 | None:intergenic | 35.0% |
| TTCAGGGAAATGGAATTAAG+GGG | + | chr7_1:71309446-71309465 | None:intergenic | 35.0% | |
| GTTCAGGGAAATGGAATTAA+GGG | + | chr7_1:71309447-71309466 | None:intergenic | 35.0% | |
| AGTTCAGGGAAATGGAATTA+AGG | + | chr7_1:71309448-71309467 | None:intergenic | 35.0% | |
| TTTCTTCAGGGATTGAAACT+GGG | + | chr7_1:71309529-71309548 | None:intergenic | 35.0% | |
| ! | TTTTCTTCAGGGATTGAAAC+TGG | + | chr7_1:71309530-71309549 | None:intergenic | 35.0% |
| ! | CATAAGATGCGTTTTCTTCA+GGG | + | chr7_1:71309541-71309560 | None:intergenic | 35.0% |
| ! | ACATAAGATGCGTTTTCTTC+AGG | + | chr7_1:71309542-71309561 | None:intergenic | 35.0% |
| ! | TGATGAGAATTCATGGGTTT+TGG | - | chr7_1:71309649-71309668 | Msa1035510:CDS | 35.0% |
| ! | GAGTTTGTGGATTGTTTAGT+TGG | - | chr7_1:71309689-71309708 | Msa1035510:CDS | 35.0% |
| ! | TTTGTGGATTGTTTAGTTGG+TGG | - | chr7_1:71309692-71309711 | Msa1035510:CDS | 35.0% |
| AACTAACCAGGTGAACATTT+CGG | + | chr7_1:71309917-71309936 | None:intergenic | 35.0% | |
| AAAGTAGCAGTTCTGCTTAA+CGG | + | chr7_1:71310089-71310108 | None:intergenic | 35.0% | |
| GGTGGTAGAGAAAGTAATAA+AGG | - | chr7_1:71310206-71310225 | Msa1035510:intron | 35.0% | |
| TGAAATGCTCATCCAAATGT+TGG | + | chr7_1:71310418-71310437 | None:intergenic | 35.0% | |
| CAATTTAGATTGCGACAACA+AGG | + | chr7_1:71310814-71310833 | None:intergenic | 35.0% | |
| ! | AGAGGTATAGAAGCATATAG+AGG | + | chr7_1:71311071-71311090 | None:intergenic | 35.0% |
| TGATTATGAGGCCAACTTAA+TGG | - | chr7_1:71311115-71311134 | Msa1035510:intron | 35.0% | |
| TTAGTGCGTGTTTGAAAATG+CGG | + | chr7_1:71311237-71311256 | None:intergenic | 35.0% | |
| !!! | TTTTGGTTTTGACATGTAGG+TGG | - | chr7_1:71311294-71311313 | Msa1035510:CDS | 35.0% |
| TGATTATCAGTCATCCACAA+GGG | - | chr7_1:71311322-71311341 | Msa1035510:CDS | 35.0% | |
| GGTCAGAAATTACTACTTCT+GGG | + | chr7_1:71311380-71311399 | None:intergenic | 35.0% | |
| AGGTCAGAAATTACTACTTC+TGG | + | chr7_1:71311381-71311400 | None:intergenic | 35.0% | |
| !! | GTGTTTTTCAAAGATGAGGG+GGG | + | chr7_1:71309292-71309311 | None:intergenic | 40.0% |
| !! | GTGGTTTGATTTGAAAACGG+GGG | + | chr7_1:71309406-71309425 | None:intergenic | 40.0% |
| TCAGGGAAATGGAATTAAGG+GGG | + | chr7_1:71309445-71309464 | None:intergenic | 40.0% | |
| !!! | GGATTTTGAGTTCAGGGAAA+TGG | + | chr7_1:71309456-71309475 | None:intergenic | 40.0% |
| ! | TTTGAGGGTTTGAAGTGAAG+TGG | + | chr7_1:71309486-71309505 | None:intergenic | 40.0% |
| !!! | TCATGGGTTTTGGTTTCAAG+TGG | - | chr7_1:71309659-71309678 | Msa1035510:CDS | 40.0% |
| !! | AAGTGGTTCTGAAGAGTTTG+TGG | - | chr7_1:71309676-71309695 | Msa1035510:CDS | 40.0% |
| !! | TATTAAGTGTTGGCAAGGAG+AGG | - | chr7_1:71309790-71309809 | Msa1035510:intron | 40.0% |
| TCAAGTTTAAAGGGCAAAGC+AGG | + | chr7_1:71309872-71309891 | None:intergenic | 40.0% | |
| TGCTTTGCCCTTTAAACTTG+AGG | - | chr7_1:71309871-71309890 | Msa1035510:intron | 40.0% | |
| TGAGGATGTTCTTGCTTCAT+TGG | - | chr7_1:71309889-71309908 | Msa1035510:intron | 40.0% | |
| CAATTGTGAATCGCAGATTG+CGG | - | chr7_1:71310034-71310053 | Msa1035510:intron | 40.0% | |
| TCGCAGATTGCGGAAAATAA+TGG | - | chr7_1:71310044-71310063 | Msa1035510:intron | 40.0% | |
| GTGTTGTCAATTGGATATGG+CGG | - | chr7_1:71310277-71310296 | Msa1035510:intron | 40.0% | |
| GTTCAAATTCCGCCAACATT+TGG | - | chr7_1:71310403-71310422 | Msa1035510:intron | 40.0% | |
| AATGCTCATCCAAATGTTGG+CGG | + | chr7_1:71310415-71310434 | None:intergenic | 40.0% | |
| GTTGAAATGCTCATCCAAAC+TGG | + | chr7_1:71310478-71310497 | None:intergenic | 40.0% | |
| ! | CAACTAAGAGTCTAAGACAG+TGG | + | chr7_1:71310714-71310733 | None:intergenic | 40.0% |
| CTTGATATTGTAGAGAGACG+CGG | - | chr7_1:71310744-71310763 | Msa1035510:intron | 40.0% | |
| ! | TTTTATTGTCTCCACTCTCC+AGG | + | chr7_1:71310791-71310810 | None:intergenic | 40.0% |
| !!! | CTGTTTTAAAAAGAGGTCGG+CGG | + | chr7_1:71310840-71310859 | None:intergenic | 40.0% |
| ! | TCATACACAATGAGCCCTTT+TGG | + | chr7_1:71310866-71310885 | None:intergenic | 40.0% |
| TAAGGTGCACTTTGTAGAAG+AGG | + | chr7_1:71311089-71311108 | None:intergenic | 40.0% | |
| !! | GTTTTGACATGTAGGTGGAA+GGG | - | chr7_1:71311299-71311318 | Msa1035510:CDS | 40.0% |
| GTGATTATCAGTCATCCACA+AGG | - | chr7_1:71311321-71311340 | Msa1035510:CDS | 40.0% | |
| TTCAGTATTTCTCTCCCTTG+TGG | + | chr7_1:71311339-71311358 | None:intergenic | 40.0% | |
| AGCTGCTAATTCCTTTGATG+TGG | - | chr7_1:71311431-71311450 | Msa1035510:CDS | 40.0% | |
| CACAAATTCAGCCACATCAA+AGG | + | chr7_1:71311445-71311464 | None:intergenic | 40.0% | |
| CTTTGATGTGGCTGAATTTG+TGG | - | chr7_1:71311443-71311462 | Msa1035510:CDS | 40.0% | |
| ATCCTTTCGAACACGCAATT+TGG | - | chr7_1:71311525-71311544 | Msa1035510:CDS | 40.0% | |
| AACCAAATTGCGTGTTCGAA+AGG | + | chr7_1:71311530-71311549 | None:intergenic | 40.0% | |
| TTTCGAACACGCAATTTGGT+TGG | - | chr7_1:71311529-71311548 | Msa1035510:CDS | 40.0% | |
| ! | GTTACCATGGATTTTACACG+AGG | + | chr7_1:71311649-71311668 | None:intergenic | 40.0% |
| TAGCATCCATAGTGTTACCA+TGG | + | chr7_1:71311662-71311681 | None:intergenic | 40.0% | |
| ! | TTTTCAAAGATGAGGGGGGT+CGG | + | chr7_1:71309288-71309307 | None:intergenic | 45.0% |
| !! | GTTTGATTTGAAAACGGGGG+TGG | + | chr7_1:71309403-71309422 | None:intergenic | 45.0% |
| !! | TTAAGGGGGTGGTGGAAAAT+GGG | + | chr7_1:71309431-71309450 | None:intergenic | 45.0% |
| !! | ATTAAGGGGGTGGTGGAAAA+TGG | + | chr7_1:71309432-71309451 | None:intergenic | 45.0% |
| AAATGGAATTAAGGGGGTGG+TGG | + | chr7_1:71309439-71309458 | None:intergenic | 45.0% | |
| TGGTCAGTGCTTGACTATAC+TGG | - | chr7_1:71309590-71309609 | Msa1035510:CDS | 45.0% | |
| !! | GGTTTTGACATGTAGGTGGA+AGG | - | chr7_1:71311298-71311317 | Msa1035510:CDS | 45.0% |
| GCTGAATTTGTGGATGAACC+TGG | - | chr7_1:71311453-71311472 | Msa1035510:CDS | 45.0% | |
| GCTTCCTCGTGTAAAATCCA+TGG | - | chr7_1:71311642-71311661 | Msa1035510:CDS | 45.0% | |
| !!! | TTAAAATTTAGTAAAATTTT+GGG | - | chr7_1:71311688-71311707 | Msa1035510:CDS | 5.0% |
| TTTCAAAGATGAGGGGGGTC+GGG | + | chr7_1:71309287-71309306 | None:intergenic | 50.0% | |
| !! | TGGTGGTGGTGTGAGAATGA+AGG | + | chr7_1:71309369-71309388 | None:intergenic | 50.0% |
| TGGTGGAATTTGCATGGTGG+TGG | + | chr7_1:71309383-71309402 | None:intergenic | 50.0% | |
| TGATTTGAAAACGGGGGTGG+TGG | + | chr7_1:71309400-71309419 | None:intergenic | 50.0% | |
| GGGAAATGGAATTAAGGGGG+TGG | + | chr7_1:71309442-71309461 | None:intergenic | 50.0% | |
| TTGGCTCCGAAATGTTCACC+TGG | - | chr7_1:71309908-71309927 | Msa1035510:intron | 50.0% | |
| ATGTGCCTCGATAGTGATCC+TGG | - | chr7_1:71310770-71310789 | Msa1035510:intron | 50.0% | |
| ACTCTCCAGGATCACTATCG+AGG | + | chr7_1:71310778-71310797 | None:intergenic | 50.0% | |
| TCGATAGTGATCCTGGAGAG+TGG | - | chr7_1:71310777-71310796 | Msa1035510:intron | 50.0% | |
| GTGCGTGTTTGAAAATGCGG+TGG | + | chr7_1:71311234-71311253 | None:intergenic | 50.0% | |
| !! | GGGTGGTGGAATTTGCATGG+TGG | + | chr7_1:71309386-71309405 | None:intergenic | 55.0% |
| !! | GGGTGGTGGAAAATGGGTTG+TGG | + | chr7_1:71309425-71309444 | None:intergenic | 55.0% |
| !! | CGGGGGTGGTGGAATTTGCA+TGG | + | chr7_1:71309389-71309408 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 71309246 | 71311839 | 71309246 | ID=Msa1035510;Name=Msa1035510 |
| chr7_1 | mRNA | 71309246 | 71311839 | 71309246 | ID=Msa1035510-mRNA-1;Parent=Msa1035510;Name=Msa1035510-mRNA-1;_AED=0.00;_eAED=0.00;_QI=98|1|1|1|1|1|2|327|261 |
| chr7_1 | exon | 71309246 | 71309772 | 71309246 | ID=Msa1035510-mRNA-1:exon:17234;Parent=Msa1035510-mRNA-1 |
| chr7_1 | exon | 71311156 | 71311839 | 71311156 | ID=Msa1035510-mRNA-1:exon:17233;Parent=Msa1035510-mRNA-1 |
| chr7_1 | five_prime_UTR | 71311742 | 71311839 | 71311742 | ID=Msa1035510-mRNA-1:five_prime_utr;Parent=Msa1035510-mRNA-1 |
| chr7_1 | CDS | 71311156 | 71311741 | 71311156 | ID=Msa1035510-mRNA-1:cds;Parent=Msa1035510-mRNA-1 |
| chr7_1 | CDS | 71309573 | 71309772 | 71309573 | ID=Msa1035510-mRNA-1:cds;Parent=Msa1035510-mRNA-1 |
| chr7_1 | three_prime_UTR | 71309246 | 71309572 | 71309246 | ID=Msa1035510-mRNA-1:three_prime_utr;Parent=Msa1035510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
