AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373220 MtrunA17_Chr3g0122231 94.737 361 16 1 1 361 1 358 0.0 665
Msa0373220 MtrunA17_Chr8g0377611 71.720 343 87 3 22 361 29 364 0.0 525
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373220 AT1G10830.1 76.897 290 67 0 72 361 78 367 1.48e-177 498
Msa0373220 AT1G10830.2 73.936 188 49 0 72 259 78 265 7.90e-103 305
Msa0373220 AT1G10830.3 74.545 110 28 0 72 181 78 187 1.07e-52 174

Find 96 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAATTTCTAAAAGATTAA+AGG 0.126652 3_1:-72257799 None:intergenic
GATTTATTTCGCCGCAATTT+TGG 0.154342 3_1:+72256738 Msa0373220:CDS
TTAATTTCACATCATCTATT+TGG 0.187467 3_1:+72258345 Msa0373220:CDS
GCAAGACAGATCCTTGTTTC+TGG 0.192408 3_1:-72258808 None:intergenic
CATTACCCATTCTTCAATAA+AGG 0.261188 3_1:+72256645 Msa0373220:CDS
AAACCGCAAATATGAGAATT+AGG 0.277606 3_1:-72257400 None:intergenic
GGTGTCTTGCTCATACAATT+TGG 0.284942 3_1:+72258286 Msa0373220:CDS
TATGAGGAGCGTTGAGAAGT+AGG 0.327710 3_1:-72256565 None:intergenic
AATGCAGTAATTACTAAGTA+TGG 0.338106 3_1:-72258516 None:intergenic
GTGGCTGTTGCAGCTTCAAT+TGG 0.349115 3_1:+72258321 Msa0373220:CDS
AGATGGTTGGTCAGGTAATC+TGG 0.354286 3_1:+72258265 Msa0373220:intron
TGCTGTTCAGATGGTTGGTC+AGG 0.355164 3_1:+72258257 Msa0373220:intron
GAGCGTTGAGAAGTAGGTTT+TGG 0.361636 3_1:-72256559 None:intergenic
CACATCATCTATTTGGTGCT+TGG 0.366412 3_1:+72258352 Msa0373220:CDS
AAAATACATCTATATGAAAC+TGG 0.374022 3_1:+72257837 Msa0373220:CDS
TCTCTCACAGGTTCAACTTC+AGG 0.382575 3_1:+72256620 Msa0373220:CDS
CGGAACAGAAAATAACTTCA+TGG 0.384156 3_1:+72256716 Msa0373220:CDS
TTTATTAATCACAGATATGA+TGG 0.389024 3_1:+72257684 Msa0373220:CDS
CCATCAAGGATTGCTGCAAA+AGG 0.390457 3_1:-72258447 None:intergenic
ATTGATAACTCAACTGGCTT+TGG 0.394276 3_1:+72256793 Msa0373220:CDS
CAAGACAGATCCTTGTTTCT+GGG 0.398701 3_1:-72258807 None:intergenic
GATCCTAATTCTCATATTTG+CGG 0.403823 3_1:+72257397 Msa0373220:CDS
GAAAATAAAATAGAAATGAT+TGG 0.405818 3_1:+72258719 Msa0373220:three_prime_UTR
CTTGCTCATACAATTTGGAT+TGG 0.409860 3_1:+72258291 Msa0373220:CDS
TCTAAAAGATTAAAGGTTGA+AGG 0.413154 3_1:-72257792 None:intergenic
TCATGTAAAATCTAATGTAT+AGG 0.422428 3_1:+72258628 Msa0373220:three_prime_UTR
TCTTCATTCTAAATGTGGTA+TGG 0.429366 3_1:+72256770 Msa0373220:CDS
TTGCTCATACAATTTGGATT+GGG 0.435090 3_1:+72258292 Msa0373220:CDS
CTTGCATAAACCGTGTTCTA+TGG 0.437728 3_1:+72258826 Msa0373220:three_prime_UTR
GGAATATGAAATGGAATAAG+AGG 0.440648 3_1:-72256533 None:intergenic
AAACTAGCAGCCTGCATAAG+AGG 0.442374 3_1:-72258564 None:intergenic
CTTTGCACACCCTCTTATGC+AGG 0.452520 3_1:+72258554 Msa0373220:CDS
GATTAAAGGTTGAAGGATAT+AGG 0.458002 3_1:-72257785 None:intergenic
ACAAGTGTACAGTCATTGTC+AGG 0.458144 3_1:-72258759 None:intergenic
ATGGCTAGCCTACGGAATAC+TGG 0.465850 3_1:+72257434 Msa0373220:CDS
GTATGGATTGATAACTCAAC+TGG 0.468553 3_1:+72256787 Msa0373220:CDS
CATCTATTTGGTGCTTGGAA+TGG 0.469784 3_1:+72258357 Msa0373220:CDS
GATTAATACCTGTGGATGCC+TGG 0.472549 3_1:-72257874 None:intergenic
AACAATGATGGGTGATGGGT+TGG 0.476075 3_1:-72256505 None:intergenic
AATACTGGTGAGAAAATCAT+TGG 0.476132 3_1:+72257449 Msa0373220:CDS
GATGAATCCCCGGAGTACTC+TGG 0.479621 3_1:-72257725 None:intergenic
TGGCAGCTCCAGAGTACTCC+GGG 0.483611 3_1:+72257717 Msa0373220:CDS
CAACAATACCTCGTGAGAAT+CGG 0.485418 3_1:-72256848 None:intergenic
ATTTGGAGATGAGAAGTATG+AGG 0.486179 3_1:-72256581 None:intergenic
TAAGAGGGAGAGAACAATGA+TGG 0.491462 3_1:-72256517 None:intergenic
TGTAGTGTGCATCAATAGAC+AGG 0.491933 3_1:+72258674 Msa0373220:three_prime_UTR
GCATCAATAGACAGGGTCAC+AGG 0.495328 3_1:+72258682 Msa0373220:three_prime_UTR
CTGCTAGTTTCAACCTCCAT+TGG 0.497102 3_1:+72258577 Msa0373220:CDS
GAGAGAACAATGATGGGTGA+TGG 0.501885 3_1:-72256510 None:intergenic
TTGGTGCTTGGAATGGAGAT+AGG 0.502563 3_1:+72258364 Msa0373220:CDS
AATCCGCAGGTAATCTTTGA+CGG 0.502619 3_1:-72258470 None:intergenic
AACCTGTGAGAGAGAGATAG+TGG 0.513143 3_1:-72256610 None:intergenic
TTTAGTTTAGTTGAAGGACT+TGG 0.513559 3_1:-72256445 None:intergenic
GGTTCTCTTCATTCTAAATG+TGG 0.519664 3_1:+72256765 Msa0373220:CDS
CATCAAGGATTGCTGCAAAA+GGG 0.524831 3_1:-72258446 None:intergenic
ATTTCCTTTCCACCTACCAA+TGG 0.531822 3_1:-72258593 None:intergenic
ACAATAGTAGTGACAGCTAA+AGG 0.535492 3_1:-72257512 None:intergenic
ACCTCCATTGGTAGGTGGAA+AGG 0.536645 3_1:+72258589 Msa0373220:exon
ATTACCTGCGGATTTCTACA+AGG 0.539323 3_1:+72258479 Msa0373220:CDS
TAGTTTCAACCTCCATTGGT+AGG 0.542093 3_1:+72258581 Msa0373220:CDS
TCTTGGTGACTAGAAGTTGT+GGG 0.542096 3_1:+72256386 Msa0373220:five_prime_UTR
AGAGAACAATGATGGGTGAT+GGG 0.543117 3_1:-72256509 None:intergenic
AAGAGGGAGAGAACAATGAT+GGG 0.545518 3_1:-72256516 None:intergenic
CACAGAAGTTGATGAATCCC+CGG 0.546615 3_1:-72257735 None:intergenic
GTAATCTTTGACGGCCATCA+AGG 0.548368 3_1:-72258461 None:intergenic
AACTCCTTGTAGAAATCCGC+AGG 0.550585 3_1:-72258483 None:intergenic
AAGAATAACCAGGCATCCAC+AGG 0.553400 3_1:+72257866 Msa0373220:CDS
CTCTTGGTGACTAGAAGTTG+TGG 0.553988 3_1:+72256385 Msa0373220:five_prime_UTR
CGGGGATTCATCAACTTCTG+TGG 0.555871 3_1:+72257736 Msa0373220:CDS
TCCTTTCCACCTACCAATGG+AGG 0.559081 3_1:-72258590 None:intergenic
GATATGATGGAATTCAACTC+TGG 0.560955 3_1:+72257697 Msa0373220:CDS
CTGGCAGCTCCAGAGTACTC+CGG 0.564920 3_1:+72257716 Msa0373220:CDS
GAATATGAAATGGAATAAGA+GGG 0.569325 3_1:-72256532 None:intergenic
AACCACTATCTCTCTCTCAC+AGG 0.578529 3_1:+72256608 Msa0373220:CDS
AACTAGCAGCCTGCATAAGA+GGG 0.580769 3_1:-72258563 None:intergenic
GTAATTACTGCATTAACACT+AGG 0.589570 3_1:+72258525 Msa0373220:CDS
CACAACTTCTAGTCACCAAG+AGG 0.595441 3_1:-72256384 None:intergenic
CATCAATAGACAGGGTCACA+GGG 0.597757 3_1:+72258683 Msa0373220:three_prime_UTR
AGAAGCAGAGAGTATAAGAG+AGG 0.598033 3_1:-72256476 None:intergenic
CTGGCATCATAAGAATAACC+AGG 0.600338 3_1:+72257856 Msa0373220:CDS
TTCCGTTAAACTAAAAGCTG+CGG 0.611809 3_1:-72256698 None:intergenic
TTTCAACCTCCATTGGTAGG+TGG 0.613440 3_1:+72258584 Msa0373220:exon
ACAGTGGCATGGCTAGCCTA+CGG 0.614954 3_1:+72257426 Msa0373220:CDS
AATTGTGTGACCCAGAAACA+AGG 0.617380 3_1:+72258797 Msa0373220:three_prime_UTR
AGGCGATTAGCTCAAAGACA+TGG 0.626170 3_1:+72258384 Msa0373220:CDS
GAGAACCACACCCAAAATTG+CGG 0.633481 3_1:-72256749 None:intergenic
AGGGCTCTCCGATTCTCACG+AGG 0.645915 3_1:+72256840 Msa0373220:CDS
TGGTGACTAGAAGTTGTGGG+TGG 0.660340 3_1:+72256389 Msa0373220:five_prime_UTR
TGGCCGTCAAAGATTACCTG+CGG 0.666868 3_1:+72258467 Msa0373220:CDS
ACAACTTCTAGTCACCAAGA+GGG 0.683299 3_1:-72256383 None:intergenic
AATTTGGATTGGGAATTCTG+TGG 0.685087 3_1:+72258302 Msa0373220:CDS
TTGATGCACACTACAGCACG+TGG 0.701313 3_1:-72258666 None:intergenic
TTAATGTGCACCATAGAACA+CGG 0.707425 3_1:-72258836 None:intergenic
GTAGTGTGCATCAATAGACA+GGG 0.716909 3_1:+72258675 Msa0373220:three_prime_UTR
GGCAGCTCCAGAGTACTCCG+GGG 0.727870 3_1:+72257718 Msa0373220:CDS
GTAGGCTAGCCATGCCACTG+TGG 0.748430 3_1:-72257424 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAACATTTCAATATGATAA+CGG + chr3_1:72257606-72257625 Msa0373220:intron 15.0%
!! TCTTAATAGATATAGATATA+AGG - chr3_1:72258061-72258080 None:intergenic 15.0%
!! GAAAATAAAATAGAAATGAT+TGG + chr3_1:72258719-72258738 Msa0373220:three_prime_UTR 15.0%
!!! TTTTTCCTTTATTGAAGAAT+GGG - chr3_1:72256653-72256672 None:intergenic 20.0%
!!! AAATTTGAAACGATTGTTAA+TGG - chr3_1:72256895-72256914 None:intergenic 20.0%
!! ATAAACTCTTGGAAAATTTA+TGG + chr3_1:72257009-72257028 Msa0373220:intron 20.0%
!!! AATTATATGTTGTTTCTCTT+TGG - chr3_1:72257148-72257167 None:intergenic 20.0%
!! TTTATTAATCACAGATATGA+TGG + chr3_1:72257684-72257703 Msa0373220:CDS 20.0%
!!! TGCAATTTCTAAAAGATTAA+AGG - chr3_1:72257802-72257821 None:intergenic 20.0%
!!! GTTTCATATAGATGTATTTT+AGG - chr3_1:72257837-72257856 None:intergenic 20.0%
!! AAAATACATCTATATGAAAC+TGG + chr3_1:72257837-72257856 Msa0373220:CDS 20.0%
!! TTAATTTCACATCATCTATT+TGG + chr3_1:72258345-72258364 Msa0373220:CDS 20.0%
!! TCATGTAAAATCTAATGTAT+AGG + chr3_1:72258628-72258647 Msa0373220:three_prime_UTR 20.0%
! TCCTTCAACTAAACTAAAAA+TGG + chr3_1:72256450-72256469 Msa0373220:exon 25.0%
! GAATATGAAATGGAATAAGA+GGG - chr3_1:72256535-72256554 None:intergenic 25.0%
!!! TTTTGGTTTGGAATATGAAA+TGG - chr3_1:72256545-72256564 None:intergenic 25.0%
!! CTTTTTCCTTTATTGAAGAA+TGG - chr3_1:72256654-72256673 None:intergenic 25.0%
!!! GCTCATTTGTTATTTATGTT+AGG + chr3_1:72256931-72256950 Msa0373220:intron 25.0%
!!! TCGAAATATGTGATTTTGAT+GGG + chr3_1:72257212-72257231 Msa0373220:intron 25.0%
! TTCAAGATAAAATCAGGTTT+GGG - chr3_1:72257265-72257284 None:intergenic 25.0%
! TTTCAAGATAAAATCAGGTT+TGG - chr3_1:72257266-72257285 None:intergenic 25.0%
! TGAGATTTCAAGATAAAATC+AGG - chr3_1:72257271-72257290 None:intergenic 25.0%
! ATGATTAGGAGAAAAGATAT+GGG - chr3_1:72257554-72257573 None:intergenic 25.0%
! TATGATTAGGAGAAAAGATA+TGG - chr3_1:72257555-72257574 None:intergenic 25.0%
!!! TCAATATGATAACGGTTTAA+CGG + chr3_1:72257614-72257633 Msa0373220:intron 25.0%
! GAAAAAGAAAGAGATGAAAT+TGG - chr3_1:72257766-72257785 None:intergenic 25.0%
! TCTAAAAGATTAAAGGTTGA+AGG - chr3_1:72257795-72257814 None:intergenic 25.0%
! ACTCTATACCAATAAGTTTA+TGG + chr3_1:72257902-72257921 Msa0373220:intron 25.0%
! ATGTCTATCCATAAACTTAT+TGG - chr3_1:72257913-72257932 None:intergenic 25.0%
!! TCTAATATTTTGTCGTAAGA+AGG + chr3_1:72257987-72258006 Msa0373220:intron 25.0%
! ACAAATTTATCACGTATTTG+AGG - chr3_1:72258142-72258161 None:intergenic 25.0%
!!! TTTCTATTTAGAAGAGCATT+TGG - chr3_1:72258165-72258184 None:intergenic 25.0%
! TTAGACACATTTCTTTCATT+TGG + chr3_1:72258204-72258223 Msa0373220:intron 25.0%
! AATGCAGTAATTACTAAGTA+TGG - chr3_1:72258519-72258538 None:intergenic 25.0%
GAAAAAATATCAAACCCTCT+TGG + chr3_1:72256369-72256388 Msa0373220:five_prime_UTR 30.0%
! TTTAGTTTAGTTGAAGGACT+TGG - chr3_1:72256448-72256467 None:intergenic 30.0%
!!! GCCATTTTTAGTTTAGTTGA+AGG - chr3_1:72256454-72256473 None:intergenic 30.0%
GGAATATGAAATGGAATAAG+AGG - chr3_1:72256536-72256555 None:intergenic 30.0%
!!! AGAGATAGTGGTTTTGAATT+TGG - chr3_1:72256601-72256620 None:intergenic 30.0%
CATTACCCATTCTTCAATAA+AGG + chr3_1:72256645-72256664 Msa0373220:CDS 30.0%
! ATTTATTTCGCCGCAATTTT+GGG + chr3_1:72256739-72256758 Msa0373220:CDS 30.0%
TCTTCATTCTAAATGTGGTA+TGG + chr3_1:72256770-72256789 Msa0373220:CDS 30.0%
TGTTAATGGTGAAGTGAAAA+GGG - chr3_1:72256881-72256900 None:intergenic 30.0%
TTGTTAATGGTGAAGTGAAA+AGG - chr3_1:72256882-72256901 None:intergenic 30.0%
!! AAGCTGTTTTCATAAACTCT+TGG + chr3_1:72256998-72257017 Msa0373220:intron 30.0%
AGATTGTTTGAGTGAACTTA+TGG - chr3_1:72257063-72257082 None:intergenic 30.0%
AAATCAATTCTGATACTCTC+TGG - chr3_1:72257186-72257205 None:intergenic 30.0%
! CTCGAAATATGTGATTTTGA+TGG + chr3_1:72257211-72257230 Msa0373220:intron 30.0%
!! GATTTTGATGGGAAAAATAC+TGG + chr3_1:72257223-72257242 Msa0373220:intron 30.0%
ATAAAATCAGGTTTGGGTAT+TGG - chr3_1:72257259-72257278 None:intergenic 30.0%
GATCCTAATTCTCATATTTG+CGG + chr3_1:72257397-72257416 Msa0373220:CDS 30.0%
AAACCGCAAATATGAGAATT+AGG - chr3_1:72257403-72257422 None:intergenic 30.0%
AATACTGGTGAGAAAATCAT+TGG + chr3_1:72257449-72257468 Msa0373220:CDS 30.0%
AGCATTTCGCTTATATGATT+AGG - chr3_1:72257568-72257587 None:intergenic 30.0%
! GCGAAATGCTTTACTTATTT+TGG + chr3_1:72257578-72257597 Msa0373220:intron 30.0%
! TGATTTTTCATCTATGATGC+AGG + chr3_1:72257656-72257675 Msa0373220:intron 30.0%
GATTAAAGGTTGAAGGATAT+AGG - chr3_1:72257788-72257807 None:intergenic 30.0%
AGTGTTAAGATTAATACCTG+TGG - chr3_1:72257885-72257904 None:intergenic 30.0%
! ATGGATAGACATGATTTTTG+TGG + chr3_1:72257921-72257940 Msa0373220:intron 30.0%
AGGATATAATGTTACTCTTG+AGG - chr3_1:72258109-72258128 None:intergenic 30.0%
GAAATGTGTCTAAATAGAGA+AGG - chr3_1:72258197-72258216 None:intergenic 30.0%
TTGCTCATACAATTTGGATT+GGG + chr3_1:72258292-72258311 Msa0373220:CDS 30.0%
GTAATTACTGCATTAACACT+AGG + chr3_1:72258525-72258544 Msa0373220:CDS 30.0%
!!! TTGAGAAGTAGGTTTTGGTT+TGG - chr3_1:72256557-72256576 None:intergenic 35.0%
! ATTTGGAGATGAGAAGTATG+AGG - chr3_1:72256584-72256603 None:intergenic 35.0%
TTCCGTTAAACTAAAAGCTG+CGG - chr3_1:72256701-72256720 None:intergenic 35.0%
CGGAACAGAAAATAACTTCA+TGG + chr3_1:72256716-72256735 Msa0373220:CDS 35.0%
! GATTTATTTCGCCGCAATTT+TGG + chr3_1:72256738-72256757 Msa0373220:CDS 35.0%
GGTTCTCTTCATTCTAAATG+TGG + chr3_1:72256765-72256784 Msa0373220:CDS 35.0%
! GTATGGATTGATAACTCAAC+TGG + chr3_1:72256787-72256806 Msa0373220:CDS 35.0%
! ATTGATAACTCAACTGGCTT+TGG + chr3_1:72256793-72256812 Msa0373220:CDS 35.0%
!!! CTTTTGTTGATGCTGTTTCA+GGG + chr3_1:72256821-72256840 Msa0373220:CDS 35.0%
!! TGTTGTTTCTCTTTGGCTAT+GGG - chr3_1:72257141-72257160 None:intergenic 35.0%
!! ATGTTGTTTCTCTTTGGCTA+TGG - chr3_1:72257142-72257161 None:intergenic 35.0%
! TCATTGGTGAAAGAGCTTTT+CGG + chr3_1:72257465-72257484 Msa0373220:CDS 35.0%
!!! CTTTTCGGGTTATTTTTGCA+GGG + chr3_1:72257480-72257499 Msa0373220:CDS 35.0%
ACAATAGTAGTGACAGCTAA+AGG - chr3_1:72257515-72257534 None:intergenic 35.0%
! GATATGATGGAATTCAACTC+TGG + chr3_1:72257697-72257716 Msa0373220:CDS 35.0%
! GTATTTGAGGATGTTTTACG+AGG - chr3_1:72258129-72258148 None:intergenic 35.0%
!!! GATTTGTTTTGCTGTTCAGA+TGG + chr3_1:72258248-72258267 Msa0373220:intron 35.0%
CTTGCTCATACAATTTGGAT+TGG + chr3_1:72258291-72258310 Msa0373220:CDS 35.0%
! AATTTGGATTGGGAATTCTG+TGG + chr3_1:72258302-72258321 Msa0373220:CDS 35.0%
! TACAGTCATTGTCAGGTTTT+TGG - chr3_1:72258755-72258774 None:intergenic 35.0%
ACAACTTCTAGTCACCAAGA+GGG - chr3_1:72256386-72256405 None:intergenic 40.0%
! TCTTGGTGACTAGAAGTTGT+GGG + chr3_1:72256386-72256405 Msa0373220:five_prime_UTR 40.0%
! AGAAGCAGAGAGTATAAGAG+AGG - chr3_1:72256479-72256498 None:intergenic 40.0%
!! AGAGAACAATGATGGGTGAT+GGG - chr3_1:72256512-72256531 None:intergenic 40.0%
AAGAGGGAGAGAACAATGAT+GGG - chr3_1:72256519-72256538 None:intergenic 40.0%
TAAGAGGGAGAGAACAATGA+TGG - chr3_1:72256520-72256539 None:intergenic 40.0%
!!! CTCCGCAGCTTTTAGTTTAA+CGG + chr3_1:72256696-72256715 Msa0373220:CDS 40.0%
!!! GCTTTTGTTGATGCTGTTTC+AGG + chr3_1:72256820-72256839 Msa0373220:CDS 40.0%
CAACAATACCTCGTGAGAAT+CGG - chr3_1:72256851-72256870 None:intergenic 40.0%
!! CTGCATTAGTCGTTGATTTG+TGG + chr3_1:72257337-72257356 Msa0373220:intron 40.0%
! ATATTTGCGGTTTTCCACAG+TGG + chr3_1:72257410-72257429 Msa0373220:CDS 40.0%
! TTTTCTCACCAGTATTCCGT+AGG - chr3_1:72257445-72257464 None:intergenic 40.0%
! CATTGGTGAAAGAGCTTTTC+GGG + chr3_1:72257466-72257485 Msa0373220:CDS 40.0%
!!! GCTTTTCGGGTTATTTTTGC+AGG + chr3_1:72257479-72257498 Msa0373220:CDS 40.0%
CTGGCATCATAAGAATAACC+AGG + chr3_1:72257856-72257875 Msa0373220:CDS 40.0%
! ACTCTTGAGGATGTTTTACG+AGG - chr3_1:72258096-72258115 None:intergenic 40.0%
! GTTTCAATTGCTCTGAGTGA+AGG + chr3_1:72258226-72258245 Msa0373220:intron 40.0%
!!! TGTTTTGCTGTTCAGATGGT+TGG + chr3_1:72258252-72258271 Msa0373220:intron 40.0%
GGTGTCTTGCTCATACAATT+TGG + chr3_1:72258286-72258305 Msa0373220:CDS 40.0%
!! CACATCATCTATTTGGTGCT+TGG + chr3_1:72258352-72258371 Msa0373220:CDS 40.0%
!! CATCTATTTGGTGCTTGGAA+TGG + chr3_1:72258357-72258376 Msa0373220:CDS 40.0%
CATCAAGGATTGCTGCAAAA+GGG - chr3_1:72258449-72258468 None:intergenic 40.0%
AATCCGCAGGTAATCTTTGA+CGG - chr3_1:72258473-72258492 None:intergenic 40.0%
ATTACCTGCGGATTTCTACA+AGG + chr3_1:72258479-72258498 Msa0373220:CDS 40.0%
TAGTTTCAACCTCCATTGGT+AGG + chr3_1:72258581-72258600 Msa0373220:CDS 40.0%
ATTTCCTTTCCACCTACCAA+TGG - chr3_1:72258596-72258615 None:intergenic 40.0%
TGTAGTGTGCATCAATAGAC+AGG + chr3_1:72258674-72258693 Msa0373220:three_prime_UTR 40.0%
GTAGTGTGCATCAATAGACA+GGG + chr3_1:72258675-72258694 Msa0373220:three_prime_UTR 40.0%
ACAAGTGTACAGTCATTGTC+AGG - chr3_1:72258762-72258781 None:intergenic 40.0%
AATTGTGTGACCCAGAAACA+AGG + chr3_1:72258797-72258816 Msa0373220:three_prime_UTR 40.0%
! CAAGACAGATCCTTGTTTCT+GGG - chr3_1:72258810-72258829 None:intergenic 40.0%
CTTGCATAAACCGTGTTCTA+TGG + chr3_1:72258826-72258845 Msa0373220:three_prime_UTR 40.0%
CACAACTTCTAGTCACCAAG+AGG - chr3_1:72256387-72256406 None:intergenic 45.0%
! CTCTTGGTGACTAGAAGTTG+TGG + chr3_1:72256385-72256404 Msa0373220:five_prime_UTR 45.0%
!! AACAATGATGGGTGATGGGT+TGG - chr3_1:72256508-72256527 None:intergenic 45.0%
!! GAGAGAACAATGATGGGTGA+TGG - chr3_1:72256513-72256532 None:intergenic 45.0%
!!! GAGCGTTGAGAAGTAGGTTT+TGG - chr3_1:72256562-72256581 None:intergenic 45.0%
!! TATGAGGAGCGTTGAGAAGT+AGG - chr3_1:72256568-72256587 None:intergenic 45.0%
AACCACTATCTCTCTCTCAC+AGG + chr3_1:72256608-72256627 Msa0373220:CDS 45.0%
AACCTGTGAGAGAGAGATAG+TGG - chr3_1:72256613-72256632 None:intergenic 45.0%
TCTCTCACAGGTTCAACTTC+AGG + chr3_1:72256620-72256639 Msa0373220:CDS 45.0%
GAAAAAGACTCGAGCTTCGT+GGG + chr3_1:72256667-72256686 Msa0373220:CDS 45.0%
GAGAACCACACCCAAAATTG+CGG - chr3_1:72256752-72256771 None:intergenic 45.0%
CCTGCAGAGTAACATGTCAA+GGG - chr3_1:72257367-72257386 None:intergenic 45.0%
ACCTGCAGAGTAACATGTCA+AGG - chr3_1:72257368-72257387 None:intergenic 45.0%
TTGACATGTTACTCTGCAGG+TGG + chr3_1:72257367-72257386 Msa0373220:intron 45.0%
!! CACAGAAGTTGATGAATCCC+CGG - chr3_1:72257738-72257757 None:intergenic 45.0%
AAGAATAACCAGGCATCCAC+AGG + chr3_1:72257866-72257885 Msa0373220:CDS 45.0%
GATTAATACCTGTGGATGCC+TGG - chr3_1:72257877-72257896 None:intergenic 45.0%
! AGATGGTTGGTCAGGTAATC+TGG + chr3_1:72258265-72258284 Msa0373220:intron 45.0%
! TTGGTGCTTGGAATGGAGAT+AGG + chr3_1:72258364-72258383 Msa0373220:CDS 45.0%
! AGGCGATTAGCTCAAAGACA+TGG + chr3_1:72258384-72258403 Msa0373220:CDS 45.0%
CCATCAAGGATTGCTGCAAA+AGG - chr3_1:72258450-72258469 None:intergenic 45.0%
! CCTTTTGCAGCAATCCTTGA+TGG + chr3_1:72258447-72258466 Msa0373220:CDS 45.0%
GTAATCTTTGACGGCCATCA+AGG - chr3_1:72258464-72258483 None:intergenic 45.0%
AACTCCTTGTAGAAATCCGC+AGG - chr3_1:72258486-72258505 None:intergenic 45.0%
AACTAGCAGCCTGCATAAGA+GGG - chr3_1:72258566-72258585 None:intergenic 45.0%
AAACTAGCAGCCTGCATAAG+AGG - chr3_1:72258567-72258586 None:intergenic 45.0%
! CTGCTAGTTTCAACCTCCAT+TGG + chr3_1:72258577-72258596 Msa0373220:CDS 45.0%
TTTCAACCTCCATTGGTAGG+TGG + chr3_1:72258584-72258603 Msa0373220:exon 45.0%
CATCAATAGACAGGGTCACA+GGG + chr3_1:72258683-72258702 Msa0373220:three_prime_UTR 45.0%
! GCAAGACAGATCCTTGTTTC+TGG - chr3_1:72258811-72258830 None:intergenic 45.0%
TGGTGACTAGAAGTTGTGGG+TGG + chr3_1:72256389-72256408 Msa0373220:five_prime_UTR 50.0%
GGAAAAAGACTCGAGCTTCG+TGG + chr3_1:72256666-72256685 Msa0373220:CDS 50.0%
!! TTTCGCCGCAATTTTGGGTG+TGG + chr3_1:72256744-72256763 Msa0373220:CDS 50.0%
CCCTTGACATGTTACTCTGC+AGG + chr3_1:72257364-72257383 Msa0373220:intron 50.0%
!! ATGGCTAGCCTACGGAATAC+TGG + chr3_1:72257434-72257453 Msa0373220:CDS 50.0%
CGGGGATTCATCAACTTCTG+TGG + chr3_1:72257736-72257755 Msa0373220:CDS 50.0%
! TGCTGTTCAGATGGTTGGTC+AGG + chr3_1:72258257-72258276 Msa0373220:intron 50.0%
GTGGCTGTTGCAGCTTCAAT+TGG + chr3_1:72258321-72258340 Msa0373220:CDS 50.0%
TGGCCGTCAAAGATTACCTG+CGG + chr3_1:72258467-72258486 Msa0373220:CDS 50.0%
CTTTGCACACCCTCTTATGC+AGG + chr3_1:72258554-72258573 Msa0373220:CDS 50.0%
ACCTCCATTGGTAGGTGGAA+AGG + chr3_1:72258589-72258608 Msa0373220:exon 50.0%
TCCTTTCCACCTACCAATGG+AGG - chr3_1:72258593-72258612 None:intergenic 50.0%
TTGATGCACACTACAGCACG+TGG - chr3_1:72258669-72258688 None:intergenic 50.0%
GCATCAATAGACAGGGTCAC+AGG + chr3_1:72258682-72258701 Msa0373220:three_prime_UTR 50.0%
! TGCGGTTTTCCACAGTGGCA+TGG + chr3_1:72257415-72257434 Msa0373220:CDS 55.0%
!! ACAGTGGCATGGCTAGCCTA+CGG + chr3_1:72257426-72257445 Msa0373220:CDS 55.0%
! GATGAATCCCCGGAGTACTC+TGG - chr3_1:72257728-72257747 None:intergenic 55.0%
AGGGCTCTCCGATTCTCACG+AGG + chr3_1:72256840-72256859 Msa0373220:CDS 60.0%
! GTAGGCTAGCCATGCCACTG+TGG - chr3_1:72257427-72257446 None:intergenic 60.0%
! CTGGCAGCTCCAGAGTACTC+CGG + chr3_1:72257716-72257735 Msa0373220:CDS 60.0%
! TGGCAGCTCCAGAGTACTCC+GGG + chr3_1:72257717-72257736 Msa0373220:CDS 60.0%
! GGCAGCTCCAGAGTACTCCG+GGG + chr3_1:72257718-72257737 Msa0373220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72256354 72258857 72256354 ID=Msa0373220;Name=Msa0373220
chr3_1 mRNA 72256354 72258857 72256354 ID=Msa0373220-mRNA-1;Parent=Msa0373220;Name=Msa0373220-mRNA-1;_AED=0.03;_eAED=0.03;_QI=115|1|1|1|1|1|4|255|361
chr3_1 exon 72256354 72256861 72256354 ID=Msa0373220-mRNA-1:exon:16018;Parent=Msa0373220-mRNA-1
chr3_1 exon 72257386 72257532 72257386 ID=Msa0373220-mRNA-1:exon:16019;Parent=Msa0373220-mRNA-1
chr3_1 exon 72257678 72257887 72257678 ID=Msa0373220-mRNA-1:exon:16020;Parent=Msa0373220-mRNA-1
chr3_1 exon 72258267 72258857 72258267 ID=Msa0373220-mRNA-1:exon:16021;Parent=Msa0373220-mRNA-1
chr3_1 five_prime_UTR 72256354 72256468 72256354 ID=Msa0373220-mRNA-1:five_prime_utr;Parent=Msa0373220-mRNA-1
chr3_1 CDS 72256469 72256861 72256469 ID=Msa0373220-mRNA-1:cds;Parent=Msa0373220-mRNA-1
chr3_1 CDS 72257386 72257532 72257386 ID=Msa0373220-mRNA-1:cds;Parent=Msa0373220-mRNA-1
chr3_1 CDS 72257678 72257887 72257678 ID=Msa0373220-mRNA-1:cds;Parent=Msa0373220-mRNA-1
chr3_1 CDS 72258267 72258602 72258267 ID=Msa0373220-mRNA-1:cds;Parent=Msa0373220-mRNA-1
chr3_1 three_prime_UTR 72258603 72258857 72258603 ID=Msa0373220-mRNA-1:three_prime_utr;Parent=Msa0373220-mRNA-1
Gene Sequence

>Msa0373220

ATGGCTGCCTCTCTTATACTCTCTGCTTCTTTCTCTCCAACCCATCACCCATCATTGTTCTCTCCCTCTTATTCCATTTCATATTCCAAACCAAAACCTACTTCTCAACGCTCCTCATACTTCTCATCTCCAAATTCAAAACCACTATCTCTCTCTCACAGGTTCAACTTCAGGCTCATTACCCATTCTTCAATAAAGGAAAAAGACTCGAGCTTCGTGGGAGAAGACTCCGCAGCTTTTAGTTTAACGGAACAGAAAATAACTTCATGGATTTATTTCGCCGCAATTTTGGGTGTGGTTCTCTTCATTCTAAATGTGGTATGGATTGATAACTCAACTGGCTTTGGTAAAGCTTTTGTTGATGCTGTTTCAGGGCTCTCCGATTCTCACGAGGTGGTAATGTTGATCCTAATTCTCATATTTGCGGTTTTCCACAGTGGCATGGCTAGCCTACGGAATACTGGTGAGAAAATCATTGGTGAAAGAGCTTTTCGGGTTATTTTTGCAGGGATATCACTACCTTTAGCTGTCACTACTATTGTGTATTTTATTAATCACAGATATGATGGAATTCAACTCTGGCAGCTCCAGAGTACTCCGGGGATTCATCAACTTCTGTGGCTTTCCAATTTCATCTCTTTCTTTTTCCTATATCCTTCAACCTTTAATCTTTTAGAAATTGCAGCAGTTGACAAGCCTAAAATACATCTATATGAAACTGGCATCATAAGAATAACCAGGCATCCACAGATGGTTGGTCAGGTAATCTGGTGTCTTGCTCATACAATTTGGATTGGGAATTCTGTGGCTGTTGCAGCTTCAATTGGCTTAATTTCACATCATCTATTTGGTGCTTGGAATGGAGATAGGCGATTAGCTCAAAGACATGGAGAAGATTTTGAGATAGTTAAGCGTCGAACAAGTATTGTCCCTTTTGCAGCAATCCTTGATGGCCGTCAAAGATTACCTGCGGATTTCTACAAGGAGTTTATTAGATTACCATACTTAGTAATTACTGCATTAACACTAGGAGCTTACTTTGCACACCCTCTTATGCAGGCTGCTAGTTTCAACCTCCATTGGTAG

Protein sequence

>Msa0373220

MAASLILSASFSPTHHPSLFSPSYSISYSKPKPTSQRSSYFSSPNSKPLSLSHRFNFRLITHSSIKEKDSSFVGEDSAAFSLTEQKITSWIYFAAILGVVLFILNVVWIDNSTGFGKAFVDAVSGLSDSHEVVMLILILIFAVFHSGMASLRNTGEKIIGERAFRVIFAGISLPLAVTTIVYFINHRYDGIQLWQLQSTPGIHQLLWLSNFISFFFLYPSTFNLLEIAAVDKPKIHLYETGIIRITRHPQMVGQVIWCLAHTIWIGNSVAVAASIGLISHHLFGAWNGDRRLAQRHGEDFEIVKRRTSIVPFAAILDGRQRLPADFYKEFIRLPYLVITALTLGAYFAHPLMQAASFNLHW*