Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267190 | XP_003609926.2 | 90.173 | 173 | 6 | 5 | 6 | 170 | 1 | 170 | 8.11e-97 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0100240 | Msa1267190 | 0.804584 | 2.013672e-49 | -8.615850e-47 |
| Msa0613460 | Msa1267190 | 0.807718 | 4.408086e-50 | -8.615850e-47 |
| Msa0626280 | Msa1267190 | 0.815105 | 1.096398e-51 | -8.615850e-47 |
| Msa0658570 | Msa1267190 | 0.822611 | 2.159110e-53 | -8.615850e-47 |
| Msa0696410 | Msa1267190 | 0.812565 | 3.977904e-51 | -8.615850e-47 |
| Msa0703490 | Msa1267190 | 0.804383 | 2.218216e-49 | -8.615850e-47 |
| Msa0144790 | Msa1267190 | 0.802483 | 5.490418e-49 | -8.615850e-47 |
| Msa1267060 | Msa1267190 | 0.867838 | 1.018768e-65 | -8.615850e-47 |
| Msa1267190 | Msa1335710 | 0.835231 | 1.892512e-56 | -8.615850e-47 |
| Msa1267190 | Msa1376890 | 0.826036 | 3.381835e-54 | -8.615850e-47 |
| Msa1267190 | Msa1397260 | 0.806022 | 1.006479e-49 | -8.615850e-47 |
| Msa1267190 | Msa1401530 | 0.860860 | 1.538067e-63 | -8.615850e-47 |
| Msa0388030 | Msa1267190 | -0.801876 | 7.319955e-49 | -8.615850e-47 |
| Msa0450350 | Msa1267190 | 0.803480 | 3.417309e-49 | -8.615850e-47 |
| Msa0268090 | Msa1267190 | 0.844437 | 7.566113e-59 | -8.615850e-47 |
| Msa0350870 | Msa1267190 | 0.800213 | 1.601819e-48 | -8.615850e-47 |
| Msa1124540 | Msa1267190 | -0.803647 | 3.154600e-49 | -8.615850e-47 |
| Msa1144720 | Msa1267190 | -0.816549 | 5.221569e-52 | -8.615850e-47 |
| Msa1219810 | Msa1267190 | 0.834671 | 2.619680e-56 | -8.615850e-47 |
| Msa0492880 | Msa1267190 | 0.812598 | 3.910593e-51 | -8.615850e-47 |
| Msa0512870 | Msa1267190 | 0.800987 | 1.113676e-48 | -8.615850e-47 |
| Msa0567020 | Msa1267190 | 0.817124 | 3.880877e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267190 | MtrunA17_Chr4g0069811 | 90.173 | 173 | 6 | 5 | 6 | 170 | 1 | 170 | 7.46e-101 | 294 |
| Msa1267190 | MtrunA17_Chr2g0302031 | 47.297 | 148 | 50 | 8 | 39 | 170 | 8 | 143 | 6.65e-24 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1267190 | AT4G33140.1 | 51.064 | 94 | 38 | 3 | 81 | 170 | 102 | 191 | 9.76e-18 | 79.7 |
Find 24 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTGTACGAGTTCTTTA+AGG | 0.194014 | 8_2:+72304630 | Msa1267190:CDS |
| AATGATATTGGTGGGTTAAA+TGG | 0.242698 | 8_2:+72303476 | Msa1267190:CDS |
| GTTAAGGTTGATAATGATAT+TGG | 0.344303 | 8_2:+72303464 | Msa1267190:CDS |
| AACCCTATGGCTTATTCAAT+AGG | 0.387771 | 8_2:+72303248 | Msa1267190:CDS |
| GTTAATAGAAGATTTGAGTT+TGG | 0.389742 | 8_2:+72303332 | Msa1267190:CDS |
| GGAGCAAGGGAATTCTGTTA+AGG | 0.434829 | 8_2:+72303448 | Msa1267190:CDS |
| TGTTGCTGTTGATGTGGATG+AGG | 0.476033 | 8_2:+72303550 | Msa1267190:CDS |
| TTTGCATAATAACAACCCTA+TGG | 0.504044 | 8_2:+72303235 | Msa1267190:CDS |
| TAACCTATTGAATAAGCCAT+AGG | 0.507567 | 8_2:-72303251 | None:intergenic |
| GTTGCTGTTGATGTGGATGA+GGG | 0.514964 | 8_2:+72303551 | Msa1267190:CDS |
| TTTGCATCTGATTTGGAGCA+AGG | 0.525020 | 8_2:+72303434 | Msa1267190:CDS |
| TCCTTGTTCTCATTTGAGCA+AGG | 0.527633 | 8_2:+72303283 | Msa1267190:CDS |
| GCTTGTTGTTGCTGTTGATG+TGG | 0.530835 | 8_2:+72303544 | Msa1267190:CDS |
| AACCTATTGAATAAGCCATA+GGG | 0.538609 | 8_2:-72303250 | None:intergenic |
| TTGCATCTGATTTGGAGCAA+GGG | 0.562036 | 8_2:+72303435 | Msa1267190:CDS |
| AGGTTGATAATGATATTGGT+GGG | 0.577068 | 8_2:+72303468 | Msa1267190:CDS |
| AAGGTTGATAATGATATTGG+TGG | 0.579097 | 8_2:+72303467 | Msa1267190:CDS |
| CTAGTGCTAGTAATAGCAGT+AGG | 0.623766 | 8_2:+72303378 | Msa1267190:CDS |
| ACCTTGCTCAAATGAGAACA+AGG | 0.632511 | 8_2:-72303284 | None:intergenic |
| AGAATAGTGAAAATCTAGCA+CGG | 0.647149 | 8_2:+72303195 | Msa1267190:CDS |
| AAACGTTGATCCCGAAAACG+AGG | 0.653630 | 8_2:-72303512 | None:intergenic |
| AGTATTAGGAAATTTCGTGT+CGG | 0.674898 | 8_2:+72304552 | Msa1267190:CDS |
| AGAGCTAATGCAAGGCCTCG+CGG | 0.678484 | 8_2:+72303410 | Msa1267190:CDS |
| AAATCAGATGCAAAACCGCG+AGG | 0.732365 | 8_2:-72303425 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTATAATAGCTTATCA+TGG | + | chr8_2:72303681-72303700 | Msa1267190:intron | 15.0% |
| !!! | GATGTTTTAAAATAGAATAA+AGG | + | chr8_2:72304152-72304171 | Msa1267190:intron | 15.0% |
| !!! | TATTTTATAATAGCTTATCA+TGG | + | chr8_2:72303681-72303700 | Msa1267190:intron | 15.0% |
| !!! | GATGTTTTAAAATAGAATAA+AGG | + | chr8_2:72304152-72304171 | Msa1267190:intron | 15.0% |
| !!! | TATGCTAATGTTTTTGATTT+TGG | + | chr8_2:72303308-72303327 | Msa1267190:CDS | 20.0% |
| !!! | ATGCTAATGTTTTTGATTTT+GGG | + | chr8_2:72303309-72303328 | Msa1267190:CDS | 20.0% |
| !! | GGAATCAATCTTTATATTAA+TGG | + | chr8_2:72303751-72303770 | Msa1267190:intron | 20.0% |
| !! | ATCAATCTTTATATTAATGG+AGG | + | chr8_2:72303754-72303773 | Msa1267190:intron | 20.0% |
| !!! | AAGAAAAAATAACTGATTCA+AGG | - | chr8_2:72304437-72304456 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTAAGCAGTATT+AGG | + | chr8_2:72304538-72304557 | Msa1267190:intron | 20.0% |
| !!! | TATGCTAATGTTTTTGATTT+TGG | + | chr8_2:72303308-72303327 | Msa1267190:CDS | 20.0% |
| !!! | ATGCTAATGTTTTTGATTTT+GGG | + | chr8_2:72303309-72303328 | Msa1267190:CDS | 20.0% |
| !! | GGAATCAATCTTTATATTAA+TGG | + | chr8_2:72303751-72303770 | Msa1267190:intron | 20.0% |
| !! | ATCAATCTTTATATTAATGG+AGG | + | chr8_2:72303754-72303773 | Msa1267190:intron | 20.0% |
| !!! | AAGAAAAAATAACTGATTCA+AGG | - | chr8_2:72304437-72304456 | None:intergenic | 20.0% |
| !!! | TCAATTTTTTAAGCAGTATT+AGG | + | chr8_2:72304538-72304557 | Msa1267190:intron | 20.0% |
| !!! | TGCTAATGTTTTTGATTTTG+GGG | + | chr8_2:72303310-72303329 | Msa1267190:CDS | 25.0% |
| !! | GTTAATAGAAGATTTGAGTT+TGG | + | chr8_2:72303332-72303351 | Msa1267190:CDS | 25.0% |
| !!! | GTTAAGGTTGATAATGATAT+TGG | + | chr8_2:72303464-72303483 | Msa1267190:CDS | 25.0% |
| !!! | TGTGTGTTTTTTAATATGCA+AGG | + | chr8_2:72303815-72303834 | Msa1267190:intron | 25.0% |
| ! | AGAACTTCACATTTAACAAA+AGG | - | chr8_2:72304062-72304081 | None:intergenic | 25.0% |
| !!! | ACTGGATTATCTTTTTTGAA+AGG | + | chr8_2:72304115-72304134 | Msa1267190:intron | 25.0% |
| !!! | TTCTTTAAGGTATCTTTTGT+TGG | + | chr8_2:72304643-72304662 | Msa1267190:CDS | 25.0% |
| !!! | TGCTAATGTTTTTGATTTTG+GGG | + | chr8_2:72303310-72303329 | Msa1267190:CDS | 25.0% |
| !! | GTTAATAGAAGATTTGAGTT+TGG | + | chr8_2:72303332-72303351 | Msa1267190:CDS | 25.0% |
| !!! | GTTAAGGTTGATAATGATAT+TGG | + | chr8_2:72303464-72303483 | Msa1267190:CDS | 25.0% |
| !!! | TGTGTGTTTTTTAATATGCA+AGG | + | chr8_2:72303815-72303834 | Msa1267190:intron | 25.0% |
| ! | AGAACTTCACATTTAACAAA+AGG | - | chr8_2:72304062-72304081 | None:intergenic | 25.0% |
| !!! | ACTGGATTATCTTTTTTGAA+AGG | + | chr8_2:72304115-72304134 | Msa1267190:intron | 25.0% |
| !!! | TTCTTTAAGGTATCTTTTGT+TGG | + | chr8_2:72304643-72304662 | Msa1267190:CDS | 25.0% |
| AGAATAGTGAAAATCTAGCA+CGG | + | chr8_2:72303195-72303214 | Msa1267190:CDS | 30.0% | |
| TTTGCATAATAACAACCCTA+TGG | + | chr8_2:72303235-72303254 | Msa1267190:CDS | 30.0% | |
| AACCTATTGAATAAGCCATA+GGG | - | chr8_2:72303253-72303272 | None:intergenic | 30.0% | |
| TAACCTATTGAATAAGCCAT+AGG | - | chr8_2:72303254-72303273 | None:intergenic | 30.0% | |
| ! | TTTTTGTAAGAGCTAATGCA+AGG | + | chr8_2:72303402-72303421 | Msa1267190:CDS | 30.0% |
| !! | AAGGTTGATAATGATATTGG+TGG | + | chr8_2:72303467-72303486 | Msa1267190:CDS | 30.0% |
| !! | AGGTTGATAATGATATTGGT+GGG | + | chr8_2:72303468-72303487 | Msa1267190:CDS | 30.0% |
| !! | AATGATATTGGTGGGTTAAA+TGG | + | chr8_2:72303476-72303495 | Msa1267190:CDS | 30.0% |
| TAATATTGTTGCTCTCTGAT+AGG | + | chr8_2:72303727-72303746 | Msa1267190:intron | 30.0% | |
| TGAACATATGCATGAAGATT+TGG | - | chr8_2:72303950-72303969 | None:intergenic | 30.0% | |
| TACACATTACCAAGAATTTC+TGG | - | chr8_2:72304092-72304111 | None:intergenic | 30.0% | |
| AGTATTAGGAAATTTCGTGT+CGG | + | chr8_2:72304552-72304571 | Msa1267190:CDS | 30.0% | |
| AGAATAGTGAAAATCTAGCA+CGG | + | chr8_2:72303195-72303214 | Msa1267190:CDS | 30.0% | |
| TTTGCATAATAACAACCCTA+TGG | + | chr8_2:72303235-72303254 | Msa1267190:CDS | 30.0% | |
| AACCTATTGAATAAGCCATA+GGG | - | chr8_2:72303253-72303272 | None:intergenic | 30.0% | |
| TAACCTATTGAATAAGCCAT+AGG | - | chr8_2:72303254-72303273 | None:intergenic | 30.0% | |
| ! | TTTTTGTAAGAGCTAATGCA+AGG | + | chr8_2:72303402-72303421 | Msa1267190:CDS | 30.0% |
| !! | AAGGTTGATAATGATATTGG+TGG | + | chr8_2:72303467-72303486 | Msa1267190:CDS | 30.0% |
| !! | AGGTTGATAATGATATTGGT+GGG | + | chr8_2:72303468-72303487 | Msa1267190:CDS | 30.0% |
| !! | AATGATATTGGTGGGTTAAA+TGG | + | chr8_2:72303476-72303495 | Msa1267190:CDS | 30.0% |
| TAATATTGTTGCTCTCTGAT+AGG | + | chr8_2:72303727-72303746 | Msa1267190:intron | 30.0% | |
| TGAACATATGCATGAAGATT+TGG | - | chr8_2:72303950-72303969 | None:intergenic | 30.0% | |
| TACACATTACCAAGAATTTC+TGG | - | chr8_2:72304092-72304111 | None:intergenic | 30.0% | |
| AGTATTAGGAAATTTCGTGT+CGG | + | chr8_2:72304552-72304571 | Msa1267190:CDS | 30.0% | |
| AACCCTATGGCTTATTCAAT+AGG | + | chr8_2:72303248-72303267 | Msa1267190:CDS | 35.0% | |
| GAGTTTGGTAGAAAAACTTG+TGG | + | chr8_2:72303347-72303366 | Msa1267190:CDS | 35.0% | |
| TGAATAATGAAGACCTTGTG+TGG | + | chr8_2:72303629-72303648 | Msa1267190:intron | 35.0% | |
| ATATTTGCCGAAATCTTAGC+TGG | + | chr8_2:72303973-72303992 | Msa1267190:intron | 35.0% | |
| ACATTGACCAGCTAAGATTT+CGG | - | chr8_2:72303983-72304002 | None:intergenic | 35.0% | |
| ! | ATTCTTTTCAGCATGCAACT+AGG | + | chr8_2:72304015-72304034 | Msa1267190:intron | 35.0% |
| CTGAAGATACCAGAAATTCT+TGG | + | chr8_2:72304080-72304099 | Msa1267190:intron | 35.0% | |
| !! | TGTTTTGAGTGACTGATACA+TGG | + | chr8_2:72304184-72304203 | Msa1267190:intron | 35.0% |
| AATTGTGAATTGTCAACTCC+AGG | + | chr8_2:72304367-72304386 | Msa1267190:intron | 35.0% | |
| CACACATCAGAGAATATATG+TGG | - | chr8_2:72304506-72304525 | None:intergenic | 35.0% | |
| TCATGTGTACGAGTTCTTTA+AGG | + | chr8_2:72304630-72304649 | Msa1267190:CDS | 35.0% | |
| AACCCTATGGCTTATTCAAT+AGG | + | chr8_2:72303248-72303267 | Msa1267190:CDS | 35.0% | |
| GAGTTTGGTAGAAAAACTTG+TGG | + | chr8_2:72303347-72303366 | Msa1267190:CDS | 35.0% | |
| TGAATAATGAAGACCTTGTG+TGG | + | chr8_2:72303629-72303648 | Msa1267190:intron | 35.0% | |
| ATATTTGCCGAAATCTTAGC+TGG | + | chr8_2:72303973-72303992 | Msa1267190:intron | 35.0% | |
| ACATTGACCAGCTAAGATTT+CGG | - | chr8_2:72303983-72304002 | None:intergenic | 35.0% | |
| ! | ATTCTTTTCAGCATGCAACT+AGG | + | chr8_2:72304015-72304034 | Msa1267190:intron | 35.0% |
| CTGAAGATACCAGAAATTCT+TGG | + | chr8_2:72304080-72304099 | Msa1267190:intron | 35.0% | |
| !! | TGTTTTGAGTGACTGATACA+TGG | + | chr8_2:72304184-72304203 | Msa1267190:intron | 35.0% |
| AATTGTGAATTGTCAACTCC+AGG | + | chr8_2:72304367-72304386 | Msa1267190:intron | 35.0% | |
| CACACATCAGAGAATATATG+TGG | - | chr8_2:72304506-72304525 | None:intergenic | 35.0% | |
| TCATGTGTACGAGTTCTTTA+AGG | + | chr8_2:72304630-72304649 | Msa1267190:CDS | 35.0% | |
| TCCTTGTTCTCATTTGAGCA+AGG | + | chr8_2:72303283-72303302 | Msa1267190:CDS | 40.0% | |
| ACCTTGCTCAAATGAGAACA+AGG | - | chr8_2:72303287-72303306 | None:intergenic | 40.0% | |
| CTAGTGCTAGTAATAGCAGT+AGG | + | chr8_2:72303378-72303397 | Msa1267190:CDS | 40.0% | |
| !! | TTTGCATCTGATTTGGAGCA+AGG | + | chr8_2:72303434-72303453 | Msa1267190:CDS | 40.0% |
| !! | TTGCATCTGATTTGGAGCAA+GGG | + | chr8_2:72303435-72303454 | Msa1267190:CDS | 40.0% |
| TACAGTCAAGATTCCACACA+AGG | - | chr8_2:72303645-72303664 | None:intergenic | 40.0% | |
| TATTGTTGCTCTCTGATAGG+AGG | + | chr8_2:72303730-72303749 | Msa1267190:intron | 40.0% | |
| !! | TCTTGGTAATGTGTAGTGAC+TGG | + | chr8_2:72304097-72304116 | Msa1267190:intron | 40.0% |
| TTGAAAGGATGTCTAGTGAC+TGG | + | chr8_2:72304130-72304149 | Msa1267190:intron | 40.0% | |
| ATCAAAGATTCATGCACACC+TGG | - | chr8_2:72304388-72304407 | None:intergenic | 40.0% | |
| TCCTTGTTCTCATTTGAGCA+AGG | + | chr8_2:72303283-72303302 | Msa1267190:CDS | 40.0% | |
| ACCTTGCTCAAATGAGAACA+AGG | - | chr8_2:72303287-72303306 | None:intergenic | 40.0% | |
| CTAGTGCTAGTAATAGCAGT+AGG | + | chr8_2:72303378-72303397 | Msa1267190:CDS | 40.0% | |
| !! | TTTGCATCTGATTTGGAGCA+AGG | + | chr8_2:72303434-72303453 | Msa1267190:CDS | 40.0% |
| !! | TTGCATCTGATTTGGAGCAA+GGG | + | chr8_2:72303435-72303454 | Msa1267190:CDS | 40.0% |
| TACAGTCAAGATTCCACACA+AGG | - | chr8_2:72303645-72303664 | None:intergenic | 40.0% | |
| TATTGTTGCTCTCTGATAGG+AGG | + | chr8_2:72303730-72303749 | Msa1267190:intron | 40.0% | |
| !! | TCTTGGTAATGTGTAGTGAC+TGG | + | chr8_2:72304097-72304116 | Msa1267190:intron | 40.0% |
| TTGAAAGGATGTCTAGTGAC+TGG | + | chr8_2:72304130-72304149 | Msa1267190:intron | 40.0% | |
| ATCAAAGATTCATGCACACC+TGG | - | chr8_2:72304388-72304407 | None:intergenic | 40.0% | |
| AAATCAGATGCAAAACCGCG+AGG | - | chr8_2:72303428-72303447 | None:intergenic | 45.0% | |
| ! | TCGCGGTTTTGCATCTGATT+TGG | + | chr8_2:72303427-72303446 | Msa1267190:CDS | 45.0% |
| GGAGCAAGGGAATTCTGTTA+AGG | + | chr8_2:72303448-72303467 | Msa1267190:CDS | 45.0% | |
| AAACGTTGATCCCGAAAACG+AGG | - | chr8_2:72303515-72303534 | None:intergenic | 45.0% | |
| !! | GCTTGTTGTTGCTGTTGATG+TGG | + | chr8_2:72303544-72303563 | Msa1267190:CDS | 45.0% |
| ! | TGTTGCTGTTGATGTGGATG+AGG | + | chr8_2:72303550-72303569 | Msa1267190:CDS | 45.0% |
| ! | GTTGCTGTTGATGTGGATGA+GGG | + | chr8_2:72303551-72303570 | Msa1267190:CDS | 45.0% |
| TCTTAGCTGGTCAATGTGTG+AGG | + | chr8_2:72303986-72304005 | Msa1267190:intron | 45.0% | |
| CCAGCTATCATCAAACAGAG+GGG | - | chr8_2:72304223-72304242 | None:intergenic | 45.0% | |
| GCCAGCTATCATCAAACAGA+GGG | - | chr8_2:72304224-72304243 | None:intergenic | 45.0% | |
| AGCCAGCTATCATCAAACAG+AGG | - | chr8_2:72304225-72304244 | None:intergenic | 45.0% | |
| TGAGACATCGCACTGAAAAC+AGG | - | chr8_2:72304414-72304433 | None:intergenic | 45.0% | |
| AAATCAGATGCAAAACCGCG+AGG | - | chr8_2:72303428-72303447 | None:intergenic | 45.0% | |
| ! | TCGCGGTTTTGCATCTGATT+TGG | + | chr8_2:72303427-72303446 | Msa1267190:CDS | 45.0% |
| GGAGCAAGGGAATTCTGTTA+AGG | + | chr8_2:72303448-72303467 | Msa1267190:CDS | 45.0% | |
| AAACGTTGATCCCGAAAACG+AGG | - | chr8_2:72303515-72303534 | None:intergenic | 45.0% | |
| !! | GCTTGTTGTTGCTGTTGATG+TGG | + | chr8_2:72303544-72303563 | Msa1267190:CDS | 45.0% |
| ! | TGTTGCTGTTGATGTGGATG+AGG | + | chr8_2:72303550-72303569 | Msa1267190:CDS | 45.0% |
| ! | GTTGCTGTTGATGTGGATGA+GGG | + | chr8_2:72303551-72303570 | Msa1267190:CDS | 45.0% |
| TCTTAGCTGGTCAATGTGTG+AGG | + | chr8_2:72303986-72304005 | Msa1267190:intron | 45.0% | |
| CCAGCTATCATCAAACAGAG+GGG | - | chr8_2:72304223-72304242 | None:intergenic | 45.0% | |
| GCCAGCTATCATCAAACAGA+GGG | - | chr8_2:72304224-72304243 | None:intergenic | 45.0% | |
| AGCCAGCTATCATCAAACAG+AGG | - | chr8_2:72304225-72304244 | None:intergenic | 45.0% | |
| TGAGACATCGCACTGAAAAC+AGG | - | chr8_2:72304414-72304433 | None:intergenic | 45.0% | |
| ! | GTTCTGCTACGCCTCGTTTT+CGG | + | chr8_2:72303501-72303520 | Msa1267190:CDS | 50.0% |
| ! | TTCTGCTACGCCTCGTTTTC+GGG | + | chr8_2:72303502-72303521 | Msa1267190:CDS | 50.0% |
| AGCTTATCATGGTGCTCGCA+TGG | + | chr8_2:72303692-72303711 | Msa1267190:intron | 50.0% | |
| TAGCTGGTCAATGTGTGAGG+TGG | + | chr8_2:72303989-72304008 | Msa1267190:intron | 50.0% | |
| ! | CCCCTCTGTTTGATGATAGC+TGG | + | chr8_2:72304220-72304239 | Msa1267190:intron | 50.0% |
| CTGGCTGCAATATTCTTGCC+TGG | + | chr8_2:72304239-72304258 | Msa1267190:intron | 50.0% | |
| TTTCCAGCATGATCTGAGCC+AGG | - | chr8_2:72304260-72304279 | None:intergenic | 50.0% | |
| ! | GTTCTGCTACGCCTCGTTTT+CGG | + | chr8_2:72303501-72303520 | Msa1267190:CDS | 50.0% |
| ! | TTCTGCTACGCCTCGTTTTC+GGG | + | chr8_2:72303502-72303521 | Msa1267190:CDS | 50.0% |
| AGCTTATCATGGTGCTCGCA+TGG | + | chr8_2:72303692-72303711 | Msa1267190:intron | 50.0% | |
| TAGCTGGTCAATGTGTGAGG+TGG | + | chr8_2:72303989-72304008 | Msa1267190:intron | 50.0% | |
| ! | CCCCTCTGTTTGATGATAGC+TGG | + | chr8_2:72304220-72304239 | Msa1267190:intron | 50.0% |
| CTGGCTGCAATATTCTTGCC+TGG | + | chr8_2:72304239-72304258 | Msa1267190:intron | 50.0% | |
| TTTCCAGCATGATCTGAGCC+AGG | - | chr8_2:72304260-72304279 | None:intergenic | 50.0% | |
| AGAGCTAATGCAAGGCCTCG+CGG | + | chr8_2:72303410-72303429 | Msa1267190:CDS | 55.0% | |
| TTGCCTGGCTCAGATCATGC+TGG | + | chr8_2:72304254-72304273 | Msa1267190:intron | 55.0% | |
| AGAGCTAATGCAAGGCCTCG+CGG | + | chr8_2:72303410-72303429 | Msa1267190:CDS | 55.0% | |
| TTGCCTGGCTCAGATCATGC+TGG | + | chr8_2:72304254-72304273 | Msa1267190:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 72303167 | 72304693 | 72303167 | ID=Msa1267190;Name=Msa1267190 |
| chr8_2 | mRNA | 72303167 | 72304693 | 72303167 | ID=Msa1267190-mRNA-1;Parent=Msa1267190;Name=Msa1267190-mRNA-1;_AED=0.05;_eAED=0.06;_QI=0|0|0|1|0|0.5|2|0|182 |
| chr8_2 | exon | 72303167 | 72303572 | 72303167 | ID=Msa1267190-mRNA-1:exon:24417;Parent=Msa1267190-mRNA-1 |
| chr8_2 | exon | 72304551 | 72304693 | 72304551 | ID=Msa1267190-mRNA-1:exon:24418;Parent=Msa1267190-mRNA-1 |
| chr8_2 | CDS | 72303167 | 72303572 | 72303167 | ID=Msa1267190-mRNA-1:cds;Parent=Msa1267190-mRNA-1 |
| chr8_2 | CDS | 72304551 | 72304693 | 72304551 | ID=Msa1267190-mRNA-1:cds;Parent=Msa1267190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
