Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301600 | XP_003609491.2 | 97.200 | 250 | 5 | 1 | 1 | 248 | 3 | 252 | 1.24e-179 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301600 | sp|Q1G3Q4|RITF1_ARATH | 67.054 | 258 | 73 | 5 | 1 | 248 | 1 | 256 | 3.63e-117 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301600 | A0A396IEQ3 | 97.200 | 250 | 5 | 1 | 1 | 248 | 3 | 252 | 5.94e-180 | 503 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1301600 | TF | PLATZ |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0048950 | Msa1301600 | 0.800121 | 1.672006e-48 | -8.615850e-47 |
| Msa0059880 | Msa1301600 | 0.838328 | 3.069438e-57 | -8.615850e-47 |
| Msa0603950 | Msa1301600 | 0.805062 | 1.600094e-49 | -8.615850e-47 |
| Msa0711240 | Msa1301600 | 0.811072 | 8.404390e-51 | -8.615850e-47 |
| Msa0777070 | Msa1301600 | 0.801513 | 8.692154e-49 | -8.615850e-47 |
| Msa0814160 | Msa1301600 | 0.801098 | 1.057111e-48 | -8.615850e-47 |
| Msa0150910 | Msa1301600 | 0.807827 | 4.179526e-50 | -8.615850e-47 |
| Msa1286420 | Msa1301600 | 0.806099 | 9.697891e-50 | -8.615850e-47 |
| Msa1301600 | Msa1373560 | 0.821601 | 3.702677e-53 | -8.615850e-47 |
| Msa0985700 | Msa1301600 | 0.815873 | 7.396499e-52 | -8.615850e-47 |
| Msa1006170 | Msa1301600 | 0.821688 | 3.534984e-53 | -8.615850e-47 |
| Msa1021620 | Msa1301600 | 0.802097 | 6.595374e-49 | -8.615850e-47 |
| Msa1024350 | Msa1301600 | 0.826827 | 2.191180e-54 | -8.615850e-47 |
| Msa1026050 | Msa1301600 | 0.800151 | 1.648457e-48 | -8.615850e-47 |
| Msa1109880 | Msa1301600 | 0.828567 | 8.369029e-55 | -8.615850e-47 |
| Msa1109890 | Msa1301600 | 0.823149 | 1.617733e-53 | -8.615850e-47 |
| Msa1214960 | Msa1301600 | 0.831158 | 1.955823e-55 | -8.615850e-47 |
| Msa0491770 | Msa1301600 | 0.802478 | 5.504034e-49 | -8.615850e-47 |
| Msa0538450 | Msa1301600 | 0.801176 | 1.018865e-48 | -8.615850e-47 |
| Msa0883640 | Msa1301600 | 0.818263 | 2.147910e-52 | -8.615850e-47 |
| Msa0902340 | Msa1301600 | 0.828140 | 1.060981e-54 | -8.615850e-47 |
| Msa0910830 | Msa1301600 | 0.828432 | 9.020027e-55 | -8.615850e-47 |
| Msa0960090 | Msa1301600 | 0.821744 | 3.430921e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301600 | MtrunA17_Chr4g0065041 | 97.200 | 250 | 5 | 1 | 1 | 248 | 3 | 252 | 0.0 | 503 |
| Msa1301600 | MtrunA17_Chr2g0297251 | 46.311 | 244 | 108 | 5 | 5 | 247 | 36 | 257 | 3.11e-64 | 201 |
| Msa1301600 | MtrunA17_Chr7g0230511 | 41.833 | 251 | 130 | 6 | 3 | 247 | 6 | 246 | 7.48e-61 | 192 |
| Msa1301600 | MtrunA17_Chr4g0040071 | 34.156 | 243 | 110 | 5 | 6 | 247 | 15 | 208 | 2.99e-40 | 138 |
| Msa1301600 | MtrunA17_Chr5g0395181 | 45.926 | 135 | 72 | 1 | 6 | 139 | 21 | 155 | 2.52e-39 | 135 |
| Msa1301600 | MtrunA17_Chr8g0366581 | 48.462 | 130 | 66 | 1 | 3 | 131 | 30 | 159 | 1.74e-38 | 134 |
| Msa1301600 | MtrunA17_Chr5g0411151 | 45.652 | 138 | 74 | 1 | 3 | 139 | 32 | 169 | 5.23e-37 | 130 |
| Msa1301600 | MtrunA17_Chr7g0265291 | 42.647 | 136 | 74 | 1 | 6 | 137 | 7 | 142 | 3.58e-33 | 119 |
| Msa1301600 | MtrunA17_Chr1g0179781 | 42.188 | 128 | 72 | 2 | 6 | 131 | 7 | 134 | 1.63e-29 | 110 |
| Msa1301600 | MtrunA17_Chr4g0052451 | 58.333 | 84 | 29 | 1 | 56 | 133 | 10 | 93 | 1.40e-28 | 104 |
| Msa1301600 | MtrunA17_Chr2g0320561 | 39.007 | 141 | 76 | 4 | 6 | 136 | 5 | 145 | 1.42e-24 | 98.2 |
| Msa1301600 | MtrunA17_Chr4g0052461 | 66.667 | 57 | 19 | 0 | 3 | 59 | 19 | 75 | 6.58e-23 | 89.0 |
| Msa1301600 | MtrunA17_Chr8g0392151 | 33.793 | 145 | 74 | 3 | 8 | 131 | 15 | 158 | 5.41e-21 | 88.6 |
| Msa1301600 | MtrunA17_Chr2g0320521 | 37.857 | 140 | 76 | 4 | 8 | 136 | 8 | 147 | 6.03e-21 | 88.2 |
| Msa1301600 | MtrunA17_Chr2g0320551 | 34.783 | 138 | 80 | 4 | 6 | 133 | 5 | 142 | 4.37e-20 | 84.3 |
| Msa1301600 | MtrunA17_Chr4g0020811 | 37.410 | 139 | 70 | 5 | 8 | 132 | 8 | 143 | 3.45e-19 | 81.6 |
| Msa1301600 | MtrunA17_Chr2g0308401 | 38.129 | 139 | 69 | 6 | 8 | 132 | 6 | 141 | 9.93e-19 | 80.5 |
| Msa1301600 | MtrunA17_Chr8g0386511 | 33.929 | 112 | 66 | 2 | 34 | 143 | 2 | 107 | 1.27e-14 | 69.3 |
| Msa1301600 | MtrunA17_Chr1g0161601 | 42.857 | 84 | 46 | 2 | 1 | 84 | 43 | 124 | 1.23e-12 | 63.5 |
| Msa1301600 | MtrunA17_Chr5g0434331 | 31.868 | 91 | 59 | 2 | 5 | 93 | 42 | 131 | 9.67e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1301600 | AT2G12646.1 | 67.054 | 258 | 73 | 5 | 1 | 248 | 1 | 256 | 3.69e-118 | 338 |
| Msa1301600 | AT2G12646.2 | 67.054 | 258 | 73 | 5 | 1 | 248 | 1 | 256 | 3.69e-118 | 338 |
| Msa1301600 | AT2G12646.3 | 66.929 | 254 | 72 | 5 | 5 | 248 | 2 | 253 | 9.63e-116 | 332 |
| Msa1301600 | AT3G60670.1 | 45.850 | 253 | 111 | 4 | 6 | 247 | 7 | 244 | 2.93e-73 | 224 |
| Msa1301600 | AT1G31040.1 | 46.311 | 244 | 111 | 6 | 5 | 247 | 18 | 242 | 2.18e-61 | 193 |
| Msa1301600 | AT4G17900.1 | 32.669 | 251 | 108 | 5 | 3 | 247 | 31 | 226 | 4.58e-37 | 130 |
| Msa1301600 | AT4G17900.2 | 32.669 | 251 | 108 | 5 | 3 | 247 | 17 | 212 | 5.28e-37 | 130 |
| Msa1301600 | AT1G32700.1 | 48.485 | 132 | 67 | 1 | 6 | 136 | 12 | 143 | 1.17e-36 | 129 |
| Msa1301600 | AT1G76590.1 | 33.745 | 243 | 145 | 4 | 6 | 247 | 18 | 245 | 2.80e-35 | 126 |
| Msa1301600 | AT1G21000.2 | 34.363 | 259 | 125 | 6 | 6 | 247 | 13 | 243 | 4.22e-35 | 125 |
| Msa1301600 | AT1G21000.1 | 34.363 | 259 | 125 | 6 | 6 | 247 | 16 | 246 | 5.33e-35 | 125 |
| Msa1301600 | AT1G43000.2 | 43.077 | 130 | 73 | 1 | 6 | 134 | 16 | 145 | 1.12e-32 | 119 |
| Msa1301600 | AT1G43000.1 | 43.077 | 130 | 73 | 1 | 6 | 134 | 9 | 138 | 1.28e-32 | 119 |
| Msa1301600 | AT5G46710.2 | 41.985 | 131 | 74 | 2 | 3 | 131 | 25 | 155 | 6.43e-30 | 110 |
| Msa1301600 | AT5G46710.3 | 41.985 | 131 | 74 | 2 | 3 | 131 | 9 | 139 | 6.52e-30 | 111 |
| Msa1301600 | AT5G46710.1 | 41.985 | 131 | 74 | 2 | 3 | 131 | 25 | 155 | 8.96e-30 | 111 |
| Msa1301600 | AT2G01818.1 | 39.860 | 143 | 76 | 3 | 7 | 139 | 12 | 154 | 1.44e-28 | 108 |
| Msa1301600 | AT2G27930.3 | 41.844 | 141 | 71 | 3 | 4 | 133 | 2 | 142 | 3.40e-28 | 105 |
| Msa1301600 | AT2G27930.2 | 41.844 | 141 | 71 | 3 | 4 | 133 | 2 | 142 | 3.40e-28 | 105 |
| Msa1301600 | AT2G27930.1 | 41.429 | 140 | 71 | 3 | 4 | 132 | 2 | 141 | 9.23e-28 | 105 |
| Msa1301600 | AT2G27930.4 | 41.429 | 140 | 71 | 3 | 4 | 132 | 2 | 141 | 9.23e-28 | 105 |
| Msa1301600 | AT1G32700.2 | 49.020 | 102 | 51 | 1 | 36 | 136 | 3 | 104 | 2.47e-26 | 101 |
| Msa1301600 | AT2G27930.5 | 44.186 | 86 | 39 | 1 | 56 | 132 | 59 | 144 | 3.90e-17 | 77.4 |
| Msa1301600 | AT2G27930.6 | 44.186 | 86 | 39 | 1 | 56 | 132 | 59 | 144 | 3.90e-17 | 77.4 |
| Msa1301600 | AT2G01818.2 | 36.471 | 85 | 48 | 2 | 61 | 139 | 6 | 90 | 2.43e-12 | 63.5 |
Find 50 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGAGAGCAATGGATAAA+AGG | 0.296836 | 8_3:+63629352 | None:intergenic |
| CTTCCAACCATGCAGGCTTT+TGG | 0.312977 | 8_3:+63629878 | None:intergenic |
| AACTTTATTGCTATTAGAAT+TGG | 0.319470 | 8_3:+63628443 | None:intergenic |
| AAGACCTTTCACCTTACTTA+AGG | 0.349364 | 8_3:-63628680 | Msa1301600:CDS |
| GATCCAATGAGTTCATATTC+AGG | 0.387250 | 8_3:-63628561 | Msa1301600:CDS |
| AATAGTCAGGACTTAATTGT+AGG | 0.397768 | 8_3:+63628646 | None:intergenic |
| TAAAGTTTCTGATGAAGATA+TGG | 0.401550 | 8_3:-63628427 | Msa1301600:CDS |
| AGTATGATTAGTAGAAGAAA+AGG | 0.404960 | 8_3:-63628399 | Msa1301600:CDS |
| AGCAATGGATAAAAGGTTCT+TGG | 0.405041 | 8_3:+63629359 | None:intergenic |
| TTATCATGATGTTCTTAGAT+TGG | 0.410755 | 8_3:-63629698 | Msa1301600:CDS |
| TTCCTGATCCTTTGAATTGG+CGG | 0.427487 | 8_3:+63629410 | None:intergenic |
| TGGCATGCACAGAAATTGTT+AGG | 0.429624 | 8_3:-63628509 | Msa1301600:CDS |
| TCATATTCAGGATCATCATC+AGG | 0.433500 | 8_3:-63628549 | Msa1301600:CDS |
| CTTCTTGATGAAAACCACTT+TGG | 0.440666 | 8_3:+63629444 | None:intergenic |
| AGTTTCCTGATCCTTTGAAT+TGG | 0.442272 | 8_3:+63629407 | None:intergenic |
| AAGTATGTGTGCAAAATTCA+TGG | 0.453257 | 8_3:-63628466 | Msa1301600:CDS |
| TTTGGCACTATTGATAGTAT+AGG | 0.459040 | 8_3:+63629462 | None:intergenic |
| AACCGCCAATTCAAAGGATC+AGG | 0.462617 | 8_3:-63629412 | Msa1301600:CDS |
| GATCCTGAATATGAACTCAT+TGG | 0.472047 | 8_3:+63628558 | None:intergenic |
| TCTTGTGGAATTAAATAGTC+AGG | 0.476037 | 8_3:+63628633 | None:intergenic |
| AAACCAAAAGCCTGCATGGT+TGG | 0.480103 | 8_3:-63629881 | Msa1301600:CDS |
| CTATTTAATTCCACAAGAGA+TGG | 0.495152 | 8_3:-63628628 | Msa1301600:CDS |
| TATTTAATTCCACAAGAGAT+GGG | 0.498798 | 8_3:-63628627 | Msa1301600:CDS |
| ATTGTTAGGAAGAGAAGAAG+TGG | 0.501836 | 8_3:-63628495 | Msa1301600:CDS |
| CCATTGCTCTCTTGGATGCA+AGG | 0.504085 | 8_3:-63629344 | Msa1301600:intron |
| CCTCAAAACCGCCAATTCAA+AGG | 0.532742 | 8_3:-63629418 | Msa1301600:CDS |
| GTGTTGCATATCCTTAAGTA+AGG | 0.537755 | 8_3:+63628669 | None:intergenic |
| AGGCGGTGGTAGCGATGAGA+TGG | 0.543611 | 8_3:+63629742 | None:intergenic |
| AATGGATAAAAGGTTCTTGG+AGG | 0.548499 | 8_3:+63629362 | None:intergenic |
| GATGACAAGGTCAACAATTG+TGG | 0.548605 | 8_3:-63628592 | Msa1301600:CDS |
| TAAAGAGCTTCCAACCATGC+AGG | 0.552228 | 8_3:+63629871 | None:intergenic |
| TATAGACTGCACCAATGTCC+AGG | 0.557416 | 8_3:-63629659 | Msa1301600:intron |
| TACTATCAATAGTGCCAAAG+TGG | 0.560803 | 8_3:-63629458 | Msa1301600:CDS |
| ATAGTCAGGACTTAATTGTA+GGG | 0.563596 | 8_3:+63628647 | None:intergenic |
| TTAGGAAGAGAAGAAGTGGA+TGG | 0.575841 | 8_3:-63628491 | Msa1301600:CDS |
| AGGGAAACCAAAAGCCTGCA+TGG | 0.579853 | 8_3:-63629885 | Msa1301600:CDS |
| CATAACGACGAACTTGAAGA+AGG | 0.581891 | 8_3:+63629722 | None:intergenic |
| ATTTAATTCCACAAGAGATG+GGG | 0.586675 | 8_3:-63628626 | Msa1301600:CDS |
| TAACAAAGAGGAGATCTATG+AGG | 0.592613 | 8_3:+63628372 | None:intergenic |
| GCTAACACTAATTAACAAAG+AGG | 0.610407 | 8_3:+63628360 | None:intergenic |
| CCTTGCATCCAAGAGAGCAA+TGG | 0.619111 | 8_3:+63629344 | None:intergenic |
| CGATGAGATGGAAAGCAATG+AGG | 0.624526 | 8_3:+63629754 | None:intergenic |
| CATATTCAGGATCATCATCA+GGG | 0.632732 | 8_3:-63628548 | Msa1301600:CDS |
| TTTAATTCCACAAGAGATGG+GGG | 0.638392 | 8_3:-63628625 | Msa1301600:CDS |
| ATATCCTTAAGTAAGGTGAA+AGG | 0.642554 | 8_3:+63628676 | None:intergenic |
| AGGGTCAGAGAATATGAGCA+TGG | 0.657131 | 8_3:-63628529 | Msa1301600:CDS |
| GACGAACTTGAAGAAGGCGG+TGG | 0.658588 | 8_3:+63629728 | None:intergenic |
| ATGTATATGTACCTGGACAT+TGG | 0.663071 | 8_3:+63629648 | None:intergenic |
| GGGATGAATTAGAGATGACA+AGG | 0.670154 | 8_3:-63628605 | Msa1301600:CDS |
| AACGACGAACTTGAAGAAGG+CGG | 0.734968 | 8_3:+63629725 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTGATATACTTTAATTAAA+AGG | - | chr8_3:63629534-63629553 | Msa1301600:intron | 10.0% |
| !! | TTAATTAAAAGGAATATATA+AGG | - | chr8_3:63629545-63629564 | Msa1301600:intron | 10.0% |
| !! | TTTGATATACTTTAATTAAA+AGG | - | chr8_3:63629534-63629553 | Msa1301600:intron | 10.0% |
| !! | TTAATTAAAAGGAATATATA+AGG | - | chr8_3:63629545-63629564 | Msa1301600:intron | 10.0% |
| !! | AAAAAAACTAAGAAAACAAA+GGG | + | chr8_3:63628389-63628408 | None:intergenic | 15.0% |
| !!! | AATTTGGTAATTGTTAATAT+AGG | - | chr8_3:63628466-63628485 | Msa1301600:CDS | 15.0% |
| !!! | ATTTGGTAATTGTTAATATA+GGG | - | chr8_3:63628467-63628486 | Msa1301600:CDS | 15.0% |
| !! | TGAATTACATAAGATTTAAT+TGG | + | chr8_3:63628831-63628850 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTGATTGAAAA+AGG | - | chr8_3:63628863-63628882 | Msa1301600:intron | 15.0% |
| !!! | TTTTTTATGTGCTATAAAAA+AGG | - | chr8_3:63629096-63629115 | Msa1301600:intron | 15.0% |
| !!! | TACATATTTTTTTTACAAGA+AGG | + | chr8_3:63629424-63629443 | None:intergenic | 15.0% |
| !! | AAAAAAACTAAGAAAACAAA+GGG | + | chr8_3:63628389-63628408 | None:intergenic | 15.0% |
| !!! | AATTTGGTAATTGTTAATAT+AGG | - | chr8_3:63628466-63628485 | Msa1301600:CDS | 15.0% |
| !!! | ATTTGGTAATTGTTAATATA+GGG | - | chr8_3:63628467-63628486 | Msa1301600:CDS | 15.0% |
| !! | TGAATTACATAAGATTTAAT+TGG | + | chr8_3:63628831-63628850 | None:intergenic | 15.0% |
| !!! | TTTTAATTTCTGATTGAAAA+AGG | - | chr8_3:63628863-63628882 | Msa1301600:intron | 15.0% |
| !!! | TTTTTTATGTGCTATAAAAA+AGG | - | chr8_3:63629096-63629115 | Msa1301600:intron | 15.0% |
| !!! | TACATATTTTTTTTACAAGA+AGG | + | chr8_3:63629424-63629443 | None:intergenic | 15.0% |
| !! | GAAAAAAACTAAGAAAACAA+AGG | + | chr8_3:63628390-63628409 | None:intergenic | 20.0% |
| !! | TTGGTTAACATGATTTAATT+TGG | - | chr8_3:63628450-63628469 | Msa1301600:CDS | 20.0% |
| !! | TATACAGAAAAATTCTTTGT+TGG | - | chr8_3:63628521-63628540 | Msa1301600:CDS | 20.0% |
| !! | AAATCTTATGTAATTCAACA+TGG | - | chr8_3:63628834-63628853 | Msa1301600:intron | 20.0% |
| !! | AAGGTTTATACATAGAATTA+TGG | - | chr8_3:63629115-63629134 | Msa1301600:intron | 20.0% |
| !! | ATGAGCATAAATGAATTTAA+TGG | + | chr8_3:63629493-63629512 | None:intergenic | 20.0% |
| !!! | TATATTTTTTGCACTAGATA+TGG | - | chr8_3:63629568-63629587 | Msa1301600:intron | 20.0% |
| !!! | ATATTTTTTGCACTAGATAT+GGG | - | chr8_3:63629569-63629588 | Msa1301600:intron | 20.0% |
| !!! | ATATGCTTAATTTGATCATA+TGG | - | chr8_3:63629628-63629647 | Msa1301600:intron | 20.0% |
| !!! | AACTTTATTGCTATTAGAAT+TGG | + | chr8_3:63629931-63629950 | None:intergenic | 20.0% |
| !! | GAAAAAAACTAAGAAAACAA+AGG | + | chr8_3:63628390-63628409 | None:intergenic | 20.0% |
| !! | TTGGTTAACATGATTTAATT+TGG | - | chr8_3:63628450-63628469 | Msa1301600:CDS | 20.0% |
| !! | TATACAGAAAAATTCTTTGT+TGG | - | chr8_3:63628521-63628540 | Msa1301600:CDS | 20.0% |
| !! | AAATCTTATGTAATTCAACA+TGG | - | chr8_3:63628834-63628853 | Msa1301600:intron | 20.0% |
| !! | AAGGTTTATACATAGAATTA+TGG | - | chr8_3:63629115-63629134 | Msa1301600:intron | 20.0% |
| !! | ATGAGCATAAATGAATTTAA+TGG | + | chr8_3:63629493-63629512 | None:intergenic | 20.0% |
| !!! | TATATTTTTTGCACTAGATA+TGG | - | chr8_3:63629568-63629587 | Msa1301600:intron | 20.0% |
| !!! | ATATTTTTTGCACTAGATAT+GGG | - | chr8_3:63629569-63629588 | Msa1301600:intron | 20.0% |
| !!! | ATATGCTTAATTTGATCATA+TGG | - | chr8_3:63629628-63629647 | Msa1301600:intron | 20.0% |
| !!! | AACTTTATTGCTATTAGAAT+TGG | + | chr8_3:63629931-63629950 | None:intergenic | 20.0% |
| ! | TTATCATGATGTTCTTAGAT+TGG | - | chr8_3:63628673-63628692 | Msa1301600:CDS | 25.0% |
| !! | TTTGAATTATGTTGTTTACC+AGG | - | chr8_3:63628886-63628905 | Msa1301600:intron | 25.0% |
| ! | TGAAACTGATTGTTCTTTAA+TGG | - | chr8_3:63629143-63629162 | Msa1301600:intron | 25.0% |
| ! | ACTCAAATTGAACAAATGAT+TGG | - | chr8_3:63629250-63629269 | Msa1301600:intron | 25.0% |
| !!! | TTATTTTAGTCAATGAGCAT+AGG | + | chr8_3:63629293-63629312 | None:intergenic | 25.0% |
| ! | TATGTGAGTGTTATAAATCA+TGG | - | chr8_3:63629381-63629400 | Msa1301600:CDS | 25.0% |
| ! | ATGTGAGTGTTATAAATCAT+GGG | - | chr8_3:63629382-63629401 | Msa1301600:CDS | 25.0% |
| ! | CATATGGAGTATATATTTGT+AGG | - | chr8_3:63629644-63629663 | Msa1301600:intron | 25.0% |
| ! | TATTTAATTCCACAAGAGAT+GGG | - | chr8_3:63629744-63629763 | Msa1301600:CDS | 25.0% |
| ! | TAAAGTTTCTGATGAAGATA+TGG | - | chr8_3:63629944-63629963 | Msa1301600:intron | 25.0% |
| ! | AGTATGATTAGTAGAAGAAA+AGG | - | chr8_3:63629972-63629991 | Msa1301600:intron | 25.0% |
| ! | TTATCATGATGTTCTTAGAT+TGG | - | chr8_3:63628673-63628692 | Msa1301600:CDS | 25.0% |
| !! | TTTGAATTATGTTGTTTACC+AGG | - | chr8_3:63628886-63628905 | Msa1301600:intron | 25.0% |
| ! | TGAAACTGATTGTTCTTTAA+TGG | - | chr8_3:63629143-63629162 | Msa1301600:intron | 25.0% |
| ! | ACTCAAATTGAACAAATGAT+TGG | - | chr8_3:63629250-63629269 | Msa1301600:intron | 25.0% |
| !!! | TTATTTTAGTCAATGAGCAT+AGG | + | chr8_3:63629293-63629312 | None:intergenic | 25.0% |
| ! | TATGTGAGTGTTATAAATCA+TGG | - | chr8_3:63629381-63629400 | Msa1301600:CDS | 25.0% |
| ! | ATGTGAGTGTTATAAATCAT+GGG | - | chr8_3:63629382-63629401 | Msa1301600:CDS | 25.0% |
| ! | CATATGGAGTATATATTTGT+AGG | - | chr8_3:63629644-63629663 | Msa1301600:intron | 25.0% |
| ! | TATTTAATTCCACAAGAGAT+GGG | - | chr8_3:63629744-63629763 | Msa1301600:CDS | 25.0% |
| ! | TAAAGTTTCTGATGAAGATA+TGG | - | chr8_3:63629944-63629963 | Msa1301600:intron | 25.0% |
| ! | AGTATGATTAGTAGAAGAAA+AGG | - | chr8_3:63629972-63629991 | Msa1301600:intron | 25.0% |
| ! | ATGACTCAAGACTTCAATTT+TGG | - | chr8_3:63628431-63628450 | Msa1301600:CDS | 30.0% |
| !!! | CATTCTTTTTTGCATTCTCA+TGG | + | chr8_3:63628556-63628575 | None:intergenic | 30.0% |
| ATTGAACATGTATATGTACC+TGG | + | chr8_3:63628733-63628752 | None:intergenic | 30.0% | |
| ! | TTTGGCACTATTGATAGTAT+AGG | + | chr8_3:63628912-63628931 | None:intergenic | 30.0% |
| GAAATTGAGCAGATATTGAT+TGG | - | chr8_3:63629317-63629336 | Msa1301600:intron | 30.0% | |
| ATGGAGTATATATTTGTAGG+TGG | - | chr8_3:63629647-63629666 | Msa1301600:intron | 30.0% | |
| ATATCCTTAAGTAAGGTGAA+AGG | + | chr8_3:63629698-63629717 | None:intergenic | 30.0% | |
| ATAGTCAGGACTTAATTGTA+GGG | + | chr8_3:63629727-63629746 | None:intergenic | 30.0% | |
| AATAGTCAGGACTTAATTGT+AGG | + | chr8_3:63629728-63629747 | None:intergenic | 30.0% | |
| TCTTGTGGAATTAAATAGTC+AGG | + | chr8_3:63629741-63629760 | None:intergenic | 30.0% | |
| CTATTTAATTCCACAAGAGA+TGG | - | chr8_3:63629743-63629762 | Msa1301600:CDS | 30.0% | |
| ATTTAATTCCACAAGAGATG+GGG | - | chr8_3:63629745-63629764 | Msa1301600:CDS | 30.0% | |
| AAGTATGTGTGCAAAATTCA+TGG | - | chr8_3:63629905-63629924 | Msa1301600:intron | 30.0% | |
| ! | ATGACTCAAGACTTCAATTT+TGG | - | chr8_3:63628431-63628450 | Msa1301600:CDS | 30.0% |
| !!! | CATTCTTTTTTGCATTCTCA+TGG | + | chr8_3:63628556-63628575 | None:intergenic | 30.0% |
| ATTGAACATGTATATGTACC+TGG | + | chr8_3:63628733-63628752 | None:intergenic | 30.0% | |
| ! | TTTGGCACTATTGATAGTAT+AGG | + | chr8_3:63628912-63628931 | None:intergenic | 30.0% |
| GAAATTGAGCAGATATTGAT+TGG | - | chr8_3:63629317-63629336 | Msa1301600:intron | 30.0% | |
| ATGGAGTATATATTTGTAGG+TGG | - | chr8_3:63629647-63629666 | Msa1301600:intron | 30.0% | |
| ATATCCTTAAGTAAGGTGAA+AGG | + | chr8_3:63629698-63629717 | None:intergenic | 30.0% | |
| ATAGTCAGGACTTAATTGTA+GGG | + | chr8_3:63629727-63629746 | None:intergenic | 30.0% | |
| AATAGTCAGGACTTAATTGT+AGG | + | chr8_3:63629728-63629747 | None:intergenic | 30.0% | |
| TCTTGTGGAATTAAATAGTC+AGG | + | chr8_3:63629741-63629760 | None:intergenic | 30.0% | |
| CTATTTAATTCCACAAGAGA+TGG | - | chr8_3:63629743-63629762 | Msa1301600:CDS | 30.0% | |
| ATTTAATTCCACAAGAGATG+GGG | - | chr8_3:63629745-63629764 | Msa1301600:CDS | 30.0% | |
| AAGTATGTGTGCAAAATTCA+TGG | - | chr8_3:63629905-63629924 | Msa1301600:intron | 30.0% | |
| ATGTATATGTACCTGGACAT+TGG | + | chr8_3:63628726-63628745 | None:intergenic | 35.0% | |
| TACTATCAATAGTGCCAAAG+TGG | - | chr8_3:63628913-63628932 | Msa1301600:intron | 35.0% | |
| CTTCTTGATGAAAACCACTT+TGG | + | chr8_3:63628930-63628949 | None:intergenic | 35.0% | |
| AGTTTCCTGATCCTTTGAAT+TGG | + | chr8_3:63628967-63628986 | None:intergenic | 35.0% | |
| AATGGATAAAAGGTTCTTGG+AGG | + | chr8_3:63629012-63629031 | None:intergenic | 35.0% | |
| AGCAATGGATAAAAGGTTCT+TGG | + | chr8_3:63629015-63629034 | None:intergenic | 35.0% | |
| TACAAGAAGGAAACTGAACT+CGG | + | chr8_3:63629411-63629430 | None:intergenic | 35.0% | |
| AAGACCTTTCACCTTACTTA+AGG | - | chr8_3:63629691-63629710 | Msa1301600:CDS | 35.0% | |
| GTGTTGCATATCCTTAAGTA+AGG | + | chr8_3:63629705-63629724 | None:intergenic | 35.0% | |
| TTTAATTCCACAAGAGATGG+GGG | - | chr8_3:63629746-63629765 | Msa1301600:CDS | 35.0% | |
| GATCCAATGAGTTCATATTC+AGG | - | chr8_3:63629810-63629829 | Msa1301600:CDS | 35.0% | |
| GATCCTGAATATGAACTCAT+TGG | + | chr8_3:63629816-63629835 | None:intergenic | 35.0% | |
| TCATATTCAGGATCATCATC+AGG | - | chr8_3:63629822-63629841 | Msa1301600:CDS | 35.0% | |
| CATATTCAGGATCATCATCA+GGG | - | chr8_3:63629823-63629842 | Msa1301600:CDS | 35.0% | |
| ATTGTTAGGAAGAGAAGAAG+TGG | - | chr8_3:63629876-63629895 | Msa1301600:CDS | 35.0% | |
| TAACAAAGAGGAGATCTATG+AGG | + | chr8_3:63630002-63630021 | None:intergenic | 35.0% | |
| ATGTATATGTACCTGGACAT+TGG | + | chr8_3:63628726-63628745 | None:intergenic | 35.0% | |
| TACTATCAATAGTGCCAAAG+TGG | - | chr8_3:63628913-63628932 | Msa1301600:intron | 35.0% | |
| CTTCTTGATGAAAACCACTT+TGG | + | chr8_3:63628930-63628949 | None:intergenic | 35.0% | |
| AGTTTCCTGATCCTTTGAAT+TGG | + | chr8_3:63628967-63628986 | None:intergenic | 35.0% | |
| AATGGATAAAAGGTTCTTGG+AGG | + | chr8_3:63629012-63629031 | None:intergenic | 35.0% | |
| AGCAATGGATAAAAGGTTCT+TGG | + | chr8_3:63629015-63629034 | None:intergenic | 35.0% | |
| TACAAGAAGGAAACTGAACT+CGG | + | chr8_3:63629411-63629430 | None:intergenic | 35.0% | |
| AAGACCTTTCACCTTACTTA+AGG | - | chr8_3:63629691-63629710 | Msa1301600:CDS | 35.0% | |
| GTGTTGCATATCCTTAAGTA+AGG | + | chr8_3:63629705-63629724 | None:intergenic | 35.0% | |
| TTTAATTCCACAAGAGATGG+GGG | - | chr8_3:63629746-63629765 | Msa1301600:CDS | 35.0% | |
| GATCCAATGAGTTCATATTC+AGG | - | chr8_3:63629810-63629829 | Msa1301600:CDS | 35.0% | |
| GATCCTGAATATGAACTCAT+TGG | + | chr8_3:63629816-63629835 | None:intergenic | 35.0% | |
| TCATATTCAGGATCATCATC+AGG | - | chr8_3:63629822-63629841 | Msa1301600:CDS | 35.0% | |
| CATATTCAGGATCATCATCA+GGG | - | chr8_3:63629823-63629842 | Msa1301600:CDS | 35.0% | |
| ATTGTTAGGAAGAGAAGAAG+TGG | - | chr8_3:63629876-63629895 | Msa1301600:CDS | 35.0% | |
| TAACAAAGAGGAGATCTATG+AGG | + | chr8_3:63630002-63630021 | None:intergenic | 35.0% | |
| CATAACGACGAACTTGAAGA+AGG | + | chr8_3:63628652-63628671 | None:intergenic | 40.0% | |
| ! | CACTATTGATAGTATAGGCC+TGG | + | chr8_3:63628907-63628926 | None:intergenic | 40.0% |
| TTCCTGATCCTTTGAATTGG+CGG | + | chr8_3:63628964-63628983 | None:intergenic | 40.0% | |
| CCAAGAGAGCAATGGATAAA+AGG | + | chr8_3:63629022-63629041 | None:intergenic | 40.0% | |
| ! | CCTTTTATCCATTGCTCTCT+TGG | - | chr8_3:63629019-63629038 | Msa1301600:intron | 40.0% |
| GGGATGAATTAGAGATGACA+AGG | - | chr8_3:63629766-63629785 | Msa1301600:CDS | 40.0% | |
| GATGACAAGGTCAACAATTG+TGG | - | chr8_3:63629779-63629798 | Msa1301600:CDS | 40.0% | |
| TGGCATGCACAGAAATTGTT+AGG | - | chr8_3:63629862-63629881 | Msa1301600:CDS | 40.0% | |
| TTAGGAAGAGAAGAAGTGGA+TGG | - | chr8_3:63629880-63629899 | Msa1301600:CDS | 40.0% | |
| CATAACGACGAACTTGAAGA+AGG | + | chr8_3:63628652-63628671 | None:intergenic | 40.0% | |
| ! | CACTATTGATAGTATAGGCC+TGG | + | chr8_3:63628907-63628926 | None:intergenic | 40.0% |
| TTCCTGATCCTTTGAATTGG+CGG | + | chr8_3:63628964-63628983 | None:intergenic | 40.0% | |
| CCAAGAGAGCAATGGATAAA+AGG | + | chr8_3:63629022-63629041 | None:intergenic | 40.0% | |
| ! | CCTTTTATCCATTGCTCTCT+TGG | - | chr8_3:63629019-63629038 | Msa1301600:intron | 40.0% |
| GGGATGAATTAGAGATGACA+AGG | - | chr8_3:63629766-63629785 | Msa1301600:CDS | 40.0% | |
| GATGACAAGGTCAACAATTG+TGG | - | chr8_3:63629779-63629798 | Msa1301600:CDS | 40.0% | |
| TGGCATGCACAGAAATTGTT+AGG | - | chr8_3:63629862-63629881 | Msa1301600:CDS | 40.0% | |
| TTAGGAAGAGAAGAAGTGGA+TGG | - | chr8_3:63629880-63629899 | Msa1301600:CDS | 40.0% | |
| AAACCAAAAGCCTGCATGGT+TGG | - | chr8_3:63628490-63628509 | Msa1301600:CDS | 45.0% | |
| TAAAGAGCTTCCAACCATGC+AGG | + | chr8_3:63628503-63628522 | None:intergenic | 45.0% | |
| CGATGAGATGGAAAGCAATG+AGG | + | chr8_3:63628620-63628639 | None:intergenic | 45.0% | |
| AACGACGAACTTGAAGAAGG+CGG | + | chr8_3:63628649-63628668 | None:intergenic | 45.0% | |
| TATAGACTGCACCAATGTCC+AGG | - | chr8_3:63628712-63628731 | Msa1301600:intron | 45.0% | |
| ! | CCTTTGAATTGGCGGTTTTG+AGG | + | chr8_3:63628956-63628975 | None:intergenic | 45.0% |
| CCTCAAAACCGCCAATTCAA+AGG | - | chr8_3:63628953-63628972 | Msa1301600:intron | 45.0% | |
| AACCGCCAATTCAAAGGATC+AGG | - | chr8_3:63628959-63628978 | Msa1301600:intron | 45.0% | |
| AATTCATCCCCCATCTCTTG+TGG | + | chr8_3:63629756-63629775 | None:intergenic | 45.0% | |
| AGGGTCAGAGAATATGAGCA+TGG | - | chr8_3:63629842-63629861 | Msa1301600:CDS | 45.0% | |
| AAACCAAAAGCCTGCATGGT+TGG | - | chr8_3:63628490-63628509 | Msa1301600:CDS | 45.0% | |
| TAAAGAGCTTCCAACCATGC+AGG | + | chr8_3:63628503-63628522 | None:intergenic | 45.0% | |
| CGATGAGATGGAAAGCAATG+AGG | + | chr8_3:63628620-63628639 | None:intergenic | 45.0% | |
| AACGACGAACTTGAAGAAGG+CGG | + | chr8_3:63628649-63628668 | None:intergenic | 45.0% | |
| TATAGACTGCACCAATGTCC+AGG | - | chr8_3:63628712-63628731 | Msa1301600:intron | 45.0% | |
| ! | CCTTTGAATTGGCGGTTTTG+AGG | + | chr8_3:63628956-63628975 | None:intergenic | 45.0% |
| CCTCAAAACCGCCAATTCAA+AGG | - | chr8_3:63628953-63628972 | Msa1301600:intron | 45.0% | |
| AACCGCCAATTCAAAGGATC+AGG | - | chr8_3:63628959-63628978 | Msa1301600:intron | 45.0% | |
| AATTCATCCCCCATCTCTTG+TGG | + | chr8_3:63629756-63629775 | None:intergenic | 45.0% | |
| AGGGTCAGAGAATATGAGCA+TGG | - | chr8_3:63629842-63629861 | Msa1301600:CDS | 45.0% | |
| !! | TGAATTTAATTATATAAAAA+AGG | - | chr8_3:63629446-63629465 | Msa1301600:CDS | 5.0% |
| !! | TGAATTTAATTATATAAAAA+AGG | - | chr8_3:63629446-63629465 | Msa1301600:CDS | 5.0% |
| AGGGAAACCAAAAGCCTGCA+TGG | - | chr8_3:63628486-63628505 | Msa1301600:CDS | 50.0% | |
| ! | CTTCCAACCATGCAGGCTTT+TGG | + | chr8_3:63628496-63628515 | None:intergenic | 50.0% |
| CCTTGCATCCAAGAGAGCAA+TGG | + | chr8_3:63629030-63629049 | None:intergenic | 50.0% | |
| CCATTGCTCTCTTGGATGCA+AGG | - | chr8_3:63629027-63629046 | Msa1301600:intron | 50.0% | |
| AGGGAAACCAAAAGCCTGCA+TGG | - | chr8_3:63628486-63628505 | Msa1301600:CDS | 50.0% | |
| ! | CTTCCAACCATGCAGGCTTT+TGG | + | chr8_3:63628496-63628515 | None:intergenic | 50.0% |
| CCTTGCATCCAAGAGAGCAA+TGG | + | chr8_3:63629030-63629049 | None:intergenic | 50.0% | |
| CCATTGCTCTCTTGGATGCA+AGG | - | chr8_3:63629027-63629046 | Msa1301600:intron | 50.0% | |
| GACGAACTTGAAGAAGGCGG+TGG | + | chr8_3:63628646-63628665 | None:intergenic | 55.0% | |
| GACGAACTTGAAGAAGGCGG+TGG | + | chr8_3:63628646-63628665 | None:intergenic | 55.0% | |
| ! | AGGCGGTGGTAGCGATGAGA+TGG | + | chr8_3:63628632-63628651 | None:intergenic | 60.0% |
| ! | AGGCGGTGGTAGCGATGAGA+TGG | + | chr8_3:63628632-63628651 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 63628371 | 63630022 | 63628371 | ID=Msa1301600;Name=Msa1301600 |
| chr8_3 | mRNA | 63628371 | 63630022 | 63628371 | ID=Msa1301600-mRNA-1;Parent=Msa1301600;Name=Msa1301600-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|248 |
| chr8_3 | exon | 63630020 | 63630022 | 63630020 | ID=Msa1301600-mRNA-1:exon:19087;Parent=Msa1301600-mRNA-1 |
| chr8_3 | exon | 63629660 | 63629905 | 63629660 | ID=Msa1301600-mRNA-1:exon:19086;Parent=Msa1301600-mRNA-1 |
| chr8_3 | exon | 63629345 | 63629485 | 63629345 | ID=Msa1301600-mRNA-1:exon:19085;Parent=Msa1301600-mRNA-1 |
| chr8_3 | exon | 63628371 | 63628727 | 63628371 | ID=Msa1301600-mRNA-1:exon:19084;Parent=Msa1301600-mRNA-1 |
| chr8_3 | CDS | 63630020 | 63630022 | 63630020 | ID=Msa1301600-mRNA-1:cds;Parent=Msa1301600-mRNA-1 |
| chr8_3 | CDS | 63629660 | 63629905 | 63629660 | ID=Msa1301600-mRNA-1:cds;Parent=Msa1301600-mRNA-1 |
| chr8_3 | CDS | 63629345 | 63629485 | 63629345 | ID=Msa1301600-mRNA-1:cds;Parent=Msa1301600-mRNA-1 |
| chr8_3 | CDS | 63628371 | 63628727 | 63628371 | ID=Msa1301600-mRNA-1:cds;Parent=Msa1301600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
