AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1286420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286420 MtrunA17_Chr8g0361731 96.491 399 9 3 1 398 1 395 0.0 788
Msa1286420 MtrunA17_Chr5g0417001 60.648 432 95 12 1 398 1 391 6.46e-163 462
Msa1286420 MtrunA17_Chr6g0453131 49.635 411 174 11 1 398 1 391 2.86e-125 367
Msa1286420 MtrunA17_Chr5g0442771 50.439 228 104 3 9 233 12 233 6.02e-75 235
Msa1286420 MtrunA17_Chr2g0311651 60.753 186 63 6 12 191 19 200 4.76e-74 233
Msa1286420 MtrunA17_Chr2g0311661 63.314 169 55 4 12 174 18 185 1.62e-72 228
Msa1286420 MtrunA17_Chr2g0318101 43.111 225 115 3 1 213 1 224 3.96e-61 201
Msa1286420 MtrunA17_Chr4g0047841 52.273 176 70 2 17 178 17 192 2.04e-60 199
Msa1286420 MtrunA17_Chr4g0076731 51.163 172 72 3 12 183 51 210 4.58e-59 198
Msa1286420 MtrunA17_Chr7g0252971 54.217 166 64 4 17 175 10 170 2.56e-58 193
Msa1286420 MtrunA17_Chr5g0417791 54.321 162 67 3 17 178 5 159 2.18e-57 188
Msa1286420 MtrunA17_Chr4g0018391 44.976 209 98 5 17 222 9 203 2.46e-56 188
Msa1286420 MtrunA17_Chr2g0326361 54.430 158 67 2 17 174 16 168 2.67e-56 187
Msa1286420 MtrunA17_Chr8g0384721 53.165 158 66 3 17 174 9 158 5.73e-56 185
Msa1286420 MtrunA17_Chr4g0042561 55.000 160 65 3 17 176 11 163 1.62e-55 184
Msa1286420 MtrunA17_Chr3g0124761 48.634 183 67 4 17 186 9 177 2.96e-55 184
Msa1286420 MtrunA17_Chr6g0453451 40.293 273 130 7 1 258 5 259 1.07e-54 183
Msa1286420 MtrunA17_Chr5g0398971 49.133 173 74 3 17 186 9 170 1.81e-54 183
Msa1286420 MtrunA17_Chr4g0060931 45.876 194 83 3 17 197 19 203 2.28e-53 181
Msa1286420 MtrunA17_Chr2g0318081 49.451 182 80 5 17 198 18 187 3.71e-53 180
Msa1286420 MtrunA17_Chr7g0263931 50.595 168 73 4 13 177 8 168 3.81e-53 179
Msa1286420 MtrunA17_Chr3g0091921 50.000 176 78 3 1 175 1 167 4.55e-53 178
Msa1286420 MtrunA17_Chr8g0372121 43.367 196 93 5 11 202 2 183 5.90e-53 178
Msa1286420 MtrunA17_Chr4g0056541 47.619 168 72 3 17 181 9 163 1.75e-52 179
Msa1286420 MtrunA17_Chr3g0130731 51.266 158 68 3 17 174 9 157 2.07e-52 176
Msa1286420 MtrunA17_Chr5g0405211 45.109 184 83 5 9 187 2 172 2.80e-52 178
Msa1286420 MtrunA17_Chr8g0359921 51.497 167 71 5 17 183 16 172 5.47e-52 176
Msa1286420 MtrunA17_Chr4g0038751 49.143 175 72 4 12 185 12 170 5.80e-52 176
Msa1286420 MtrunA17_Chr2g0309891 50.932 161 67 4 17 175 8 158 6.10e-52 177
Msa1286420 MtrunA17_Chr6g0461661 45.455 176 88 2 12 186 14 182 1.06e-50 174
Msa1286420 MtrunA17_Chr2g0316971 50.000 162 70 2 17 176 25 177 3.93e-50 173
Msa1286420 MtrunA17_Chr3g0139331 48.588 177 76 3 1 177 1 162 1.01e-49 171
Msa1286420 MtrunA17_Chr6g0481091 42.328 189 95 4 17 203 8 184 3.17e-49 166
Msa1286420 MtrunA17_Chr6g0484441 46.471 170 78 3 11 180 1 157 3.47e-49 169
Msa1286420 MtrunA17_Chr7g0253011 41.589 214 100 4 17 212 19 225 3.82e-49 171
Msa1286420 MtrunA17_Chr4g0017921 50.000 164 63 4 17 176 10 158 6.85e-49 169
Msa1286420 MtrunA17_Chr3g0109821 45.596 193 81 6 17 206 8 179 1.88e-48 174
Msa1286420 MtrunA17_Chr1g0200561 46.707 167 73 4 11 174 15 168 5.22e-48 167
Msa1286420 MtrunA17_Chr8g0346001 46.988 166 77 4 17 176 17 177 5.68e-48 169
Msa1286420 MtrunA17_Chr2g0309331 46.012 163 73 3 17 176 12 162 1.75e-47 165
Msa1286420 MtrunA17_Chr5g0428991 50.307 163 68 4 18 178 28 179 2.09e-47 171
Msa1286420 MtrunA17_Chr1g0147421 47.126 174 79 4 3 175 16 177 6.20e-47 164
Msa1286420 MtrunA17_Chr7g0214071 45.604 182 85 3 1 182 1 168 7.28e-47 160
Msa1286420 MtrunA17_Chr5g0433781 46.584 161 73 3 17 175 8 157 7.33e-47 169
Msa1286420 MtrunA17_Chr5g0400461 46.707 167 66 4 17 174 8 160 1.17e-46 162
Msa1286420 MtrunA17_Chr3g0128151 47.273 165 74 4 18 180 25 178 1.19e-45 166
Msa1286420 MtrunA17_Chr1g0183741 36.910 233 122 4 17 246 12 222 1.21e-45 158
Msa1286420 MtrunA17_Chr3g0130101 45.732 164 76 4 13 174 5 157 1.23e-45 160
Msa1286420 MtrunA17_Chr4g0054791 46.784 171 79 4 17 184 8 169 1.94e-45 159
Msa1286420 MtrunA17_Chr7g0217721 46.061 165 81 3 18 176 22 184 4.05e-45 159
Msa1286420 MtrunA17_Chr8g0364791 40.805 174 90 4 15 186 6 168 9.83e-45 160
Msa1286420 MtrunA17_Chr2g0312321 46.199 171 80 4 11 181 7 165 1.38e-44 156
Msa1286420 MtrunA17_Chr3g0144271 34.551 301 118 7 9 234 17 313 1.40e-44 159
Msa1286420 MtrunA17_Chr1g0201021 47.024 168 72 5 13 175 15 170 2.96e-44 161
Msa1286420 MtrunA17_Chr3g0128111 43.636 165 80 4 18 180 45 198 3.28e-44 154
Msa1286420 MtrunA17_Chr7g0217711 51.562 128 60 1 18 145 22 147 7.95e-43 147
Msa1286420 MtrunA17_Chr7g0261411 42.949 156 76 1 17 172 12 154 2.06e-42 150
Msa1286420 MtrunA17_Chr8g0384201 39.080 174 93 4 15 186 6 168 3.67e-42 154
Msa1286420 MtrunA17_Chr1g0197361 44.311 167 72 5 17 177 10 161 4.78e-42 155
Msa1286420 MtrunA17_Chr8g0385991 44.516 155 80 2 17 171 16 164 1.40e-41 146
Msa1286420 MtrunA17_Chr1g0197351 42.857 168 81 4 15 176 42 200 2.50e-41 152
Msa1286420 MtrunA17_Chr3g0092671 39.785 186 95 6 17 199 7 178 3.69e-40 149
Msa1286420 MtrunA17_Chr3g0131911 42.857 168 89 3 17 182 16 178 4.58e-37 134
Msa1286420 MtrunA17_Chr8g0345671 49.254 134 64 3 18 148 14 146 9.25e-37 138
Msa1286420 MtrunA17_Chr4g0026141 35.023 217 124 6 11 222 1 205 1.28e-36 134
Msa1286420 MtrunA17_Chr7g0266701 30.000 250 156 9 15 257 4 241 9.04e-35 129
Msa1286420 MtrunA17_Chr2g0321631 40.000 165 80 6 17 172 6 160 1.75e-32 122
Msa1286420 MtrunA17_Chr8g0345691 47.244 127 63 3 18 141 15 140 2.98e-32 126
Msa1286420 MtrunA17_Chr3g0113001 43.200 125 63 2 60 184 10 126 2.05e-29 115
Msa1286420 MtrunA17_Chr8g0345711 40.146 137 78 3 18 151 15 150 2.07e-29 112
Msa1286420 MtrunA17_Chr4g0050701 37.342 158 88 2 17 174 13 159 1.31e-28 110
Msa1286420 MtrunA17_Chr8g0345731 41.844 141 76 5 15 149 23 163 4.04e-27 106
Msa1286420 MtrunA17_Chr8g0345721 35.976 164 72 3 18 149 38 200 5.46e-26 104
Msa1286420 MtrunA17_Chr2g0321741 43.925 107 57 2 35 140 12 116 7.11e-26 107
Msa1286420 MtrunA17_Chr8g0345741 41.176 119 66 3 26 141 2 119 1.59e-23 95.9
Msa1286420 MtrunA17_Chr8g0345701 36.879 141 69 5 18 141 10 147 9.45e-21 89.0
Msa1286420 MtrunA17_Chr8g0384351 32.738 168 82 6 17 184 12 148 1.30e-19 85.9
Msa1286420 MtrunA17_Chr3g0113031 40.566 106 52 3 78 181 3 99 2.07e-19 87.4
Msa1286420 MtrunA17_Chr7g0243371 45.455 77 42 0 68 144 17 93 2.97e-19 82.8
Msa1286420 MtrunA17_Chr3g0130321 31.481 162 96 5 17 173 9 160 2.09e-17 80.5
Msa1286420 MtrunA17_Chr7g0251651 29.518 166 100 6 18 181 21 171 3.32e-16 76.6
Msa1286420 MtrunA17_Chr7g0251671 31.818 132 82 5 18 146 13 139 1.48e-15 73.9
Msa1286420 MtrunA17_Chr7g0251661 31.884 138 87 5 13 147 7 140 2.87e-15 72.8
Msa1286420 MtrunA17_Chr1g0194791 60.417 48 18 1 17 63 48 95 2.47e-13 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286420 AT1G26870.1 61.091 275 89 5 1 264 1 268 1.79e-108 325
Msa1286420 AT5G39820.1 66.667 204 55 4 2 192 7 210 2.26e-97 294
Msa1286420 AT2G43000.1 60.116 173 57 3 9 181 12 172 1.25e-72 228
Msa1286420 AT3G12910.1 56.284 183 71 5 1 175 5 186 5.17e-62 202
Msa1286420 AT2G02450.1 47.573 206 84 5 14 219 50 231 5.95e-60 199
Msa1286420 AT2G02450.2 47.573 206 84 5 14 219 50 231 6.79e-60 200
Msa1286420 AT3G15510.1 45.498 211 104 4 19 218 21 231 1.81e-58 195
Msa1286420 AT1G69490.1 45.813 203 103 4 17 219 11 206 4.07e-58 191
Msa1286420 AT3G04070.2 53.529 170 64 3 17 178 12 174 6.60e-58 192
Msa1286420 AT1G61110.1 53.143 175 71 4 17 183 18 189 2.22e-57 191
Msa1286420 AT3G04070.1 51.397 179 70 3 17 178 12 190 5.23e-57 191
Msa1286420 AT5G63790.1 44.186 215 101 6 3 215 36 233 6.19e-56 186
Msa1286420 AT5G63790.2 44.186 215 101 6 3 215 46 243 7.56e-56 187
Msa1286420 AT1G01720.1 52.410 166 71 3 17 182 9 166 4.29e-55 184
Msa1286420 AT4G27410.2 50.595 168 72 3 17 184 16 172 2.46e-54 182
Msa1286420 AT2G17040.1 50.286 175 70 4 12 185 3 161 3.51e-54 181
Msa1286420 AT1G76420.1 46.524 187 84 2 2 188 15 185 6.30e-54 182
Msa1286420 AT5G61430.1 35.811 296 145 6 1 286 1 261 1.47e-53 181
Msa1286420 AT5G08790.1 51.534 163 71 4 13 174 4 159 1.90e-53 179
Msa1286420 AT5G07680.2 43.868 212 100 3 17 218 5 207 4.09e-53 179
Msa1286420 AT1G12260.2 48.810 168 70 4 17 181 9 163 4.46e-53 180
Msa1286420 AT4G36160.1 47.701 174 75 4 17 187 12 172 4.52e-53 181
Msa1286420 AT4G36160.3 47.701 174 75 4 17 187 12 172 4.52e-53 181
Msa1286420 AT1G12260.1 48.810 168 70 4 17 181 9 163 5.08e-53 181
Msa1286420 AT4G36160.2 47.701 174 75 4 17 187 16 176 5.31e-53 181
Msa1286420 AT5G07680.1 43.868 212 100 3 17 218 19 221 5.40e-53 179
Msa1286420 AT1G52880.1 54.438 169 66 3 19 181 21 184 8.56e-53 179
Msa1286420 AT5G39610.1 44.554 202 89 4 17 206 22 212 8.75e-53 177
Msa1286420 AT1G77450.1 40.650 246 128 7 17 253 12 248 8.86e-53 176
Msa1286420 AT2G18060.3 47.701 174 74 5 17 187 11 170 2.32e-52 179
Msa1286420 AT2G18060.1 47.701 174 74 5 17 187 11 170 2.32e-52 179
Msa1286420 AT3G15500.1 51.190 168 67 4 17 182 16 170 4.18e-52 177
Msa1286420 AT2G24430.2 47.093 172 81 1 9 180 10 171 9.21e-52 176
Msa1286420 AT2G24430.1 47.093 172 81 1 9 180 10 171 9.21e-52 176
Msa1286420 AT1G52890.1 51.479 169 66 5 17 183 16 170 1.13e-51 176
Msa1286420 AT4G10350.1 36.934 287 137 9 17 293 11 263 3.19e-51 175
Msa1286420 AT1G62700.1 46.784 171 75 3 17 184 9 166 5.31e-51 176
Msa1286420 AT1G62700.2 46.784 171 75 3 17 184 9 166 5.31e-51 176
Msa1286420 AT3G17730.1 48.193 166 73 3 17 180 8 162 5.82e-51 171
Msa1286420 AT5G66300.1 44.240 217 98 7 17 225 14 215 1.50e-50 172
Msa1286420 AT1G71930.2 38.550 262 128 9 11 263 5 242 2.81e-50 172
Msa1286420 AT1G71930.1 38.550 262 128 9 11 263 5 242 2.81e-50 172
Msa1286420 AT3G18400.1 48.235 170 76 3 11 180 1 158 3.07e-50 172
Msa1286420 AT5G18270.1 48.750 160 74 2 17 176 23 174 3.46e-50 172
Msa1286420 AT3G29035.1 47.150 193 87 6 6 195 14 194 3.52e-50 172
Msa1286420 AT5G62380.2 47.826 161 68 4 17 174 9 156 3.68e-50 172
Msa1286420 AT5G62380.1 47.826 161 68 4 17 174 9 156 3.68e-50 172
Msa1286420 AT3G04060.1 48.256 172 77 3 17 184 22 185 4.06e-50 172
Msa1286420 AT4G27410.3 45.946 185 72 4 17 184 16 189 4.78e-50 171
Msa1286420 AT1G33280.1 50.307 163 64 3 17 176 10 158 6.40e-50 171
Msa1286420 AT1G65910.1 49.693 163 69 3 15 175 6 157 7.10e-50 178
Msa1286420 AT5G18270.2 48.125 160 75 2 17 176 23 174 2.39e-49 170
Msa1286420 AT3G03200.1 45.604 182 86 5 17 195 8 179 3.24e-49 173
Msa1286420 AT4G17980.2 47.500 160 75 2 17 174 8 160 5.05e-49 168
Msa1286420 AT4G17980.1 47.500 160 75 2 17 174 8 160 5.17e-49 167
Msa1286420 AT5G17260.1 46.199 171 80 4 17 185 8 168 1.36e-48 172
Msa1286420 AT3G15170.1 47.337 169 82 2 12 180 17 178 1.38e-48 167
Msa1286420 AT5G53950.1 45.930 172 86 2 13 184 15 179 1.48e-48 169
Msa1286420 AT3G61910.1 38.961 231 122 7 17 233 13 238 3.15e-48 167
Msa1286420 AT2G46770.1 46.108 167 81 3 17 176 18 182 1.50e-47 166
Msa1286420 AT3G10500.1 46.667 165 75 4 15 177 9 162 3.50e-46 166
Msa1286420 AT1G33060.1 46.951 164 74 3 13 174 22 174 1.14e-45 167
Msa1286420 AT1G32770.1 45.122 164 84 3 17 176 18 179 1.14e-45 161
Msa1286420 AT1G33060.2 46.951 164 74 3 13 174 22 174 1.27e-45 166
Msa1286420 AT1G54330.1 46.707 167 73 3 17 181 8 160 1.27e-45 159
Msa1286420 AT4G35580.2 50.314 159 66 4 18 174 12 159 1.46e-45 164
Msa1286420 AT4G35580.3 50.314 159 66 4 18 174 12 159 1.51e-45 164
Msa1286420 AT4G35580.1 50.314 159 66 4 18 174 12 159 1.64e-45 164
Msa1286420 AT5G13180.1 49.068 161 69 2 17 177 16 163 1.67e-45 157
Msa1286420 AT1G79580.3 46.626 163 71 4 17 176 19 168 2.38e-45 160
Msa1286420 AT1G79580.5 46.626 163 71 4 17 176 19 168 2.38e-45 160
Msa1286420 AT1G79580.4 46.626 163 71 4 17 176 19 168 2.38e-45 160
Msa1286420 AT1G79580.2 46.626 163 71 4 17 176 19 168 2.38e-45 160
Msa1286420 AT1G79580.1 46.626 163 71 4 17 176 19 168 2.38e-45 160
Msa1286420 AT1G32510.1 39.035 228 118 6 17 233 8 225 2.67e-45 158
Msa1286420 AT3G12977.1 43.258 178 91 3 2 179 5 172 3.99e-45 157
Msa1286420 AT5G46590.2 54.688 128 55 2 17 142 8 134 4.87e-45 157
Msa1286420 AT1G56010.2 45.556 180 77 5 2 174 6 171 7.05e-45 158
Msa1286420 AT5G46590.1 54.688 128 55 2 17 142 8 134 7.45e-45 157
Msa1286420 AT1G34180.3 45.087 173 82 3 7 177 8 169 8.66e-45 161
Msa1286420 AT3G10490.1 44.512 164 79 4 15 176 27 180 2.23e-44 154
Msa1286420 AT1G34190.1 44.828 174 81 4 7 177 8 169 3.14e-44 161
Msa1286420 AT1G34180.1 45.087 173 82 3 7 177 8 169 4.26e-44 161
Msa1286420 AT5G04410.1 45.055 182 83 7 15 193 9 176 1.05e-43 160
Msa1286420 AT3G10480.1 44.578 166 76 4 15 176 27 180 1.32e-43 157
Msa1286420 AT3G10480.2 44.048 168 73 4 15 176 27 179 1.75e-43 157
Msa1286420 AT3G10490.2 44.512 164 79 4 15 176 27 180 4.98e-43 156
Msa1286420 AT5G24590.2 46.199 171 79 4 9 176 6 166 7.75e-43 155
Msa1286420 AT1G34180.4 41.622 185 83 3 7 177 8 181 1.67e-42 155
Msa1286420 AT1G34180.2 41.622 185 83 3 7 177 8 181 7.77e-42 155
Msa1286420 AT5G09330.5 41.975 162 81 4 15 174 6 156 2.86e-41 152
Msa1286420 AT5G09330.2 41.975 162 81 4 15 174 6 156 2.86e-41 152
Msa1286420 AT5G09330.4 41.975 162 81 4 15 174 6 156 2.86e-41 152
Msa1286420 AT5G09330.3 41.975 162 81 4 15 174 6 156 2.86e-41 152
Msa1286420 AT5G09330.1 41.975 162 81 4 15 174 6 156 2.86e-41 152
Msa1286420 AT5G64060.1 31.786 280 158 10 15 285 6 261 1.32e-40 147
Msa1286420 AT3G49530.2 42.767 159 79 3 18 174 16 164 1.90e-40 148
Msa1286420 AT4G28530.1 41.379 174 73 3 17 174 12 172 2.04e-40 147
Msa1286420 AT3G49530.1 42.767 159 79 3 18 174 16 164 5.84e-40 148
Msa1286420 AT2G33480.1 41.899 179 90 4 1 179 1 165 9.35e-40 143
Msa1286420 AT5G22290.1 39.535 172 83 4 15 182 21 175 4.76e-39 143
Msa1286420 AT2G33480.2 41.341 179 89 4 1 179 1 163 1.54e-38 139
Msa1286420 AT3G10480.3 37.563 197 78 4 15 176 27 213 4.88e-38 144
Msa1286420 AT3G44290.2 46.825 126 64 2 16 140 15 138 1.11e-37 136
Msa1286420 AT2G27300.1 44.531 128 68 2 14 140 13 138 2.42e-37 138
Msa1286420 AT3G44290.1 46.825 126 64 2 16 140 15 138 3.93e-37 137
Msa1286420 AT5G04395.1 39.623 159 80 3 12 156 25 181 6.45e-35 127
Msa1286420 AT5G61430.2 33.476 233 111 5 63 286 1 198 1.02e-34 129
Msa1286420 AT2G43000.2 58.095 105 32 3 77 181 2 94 3.66e-33 123
Msa1286420 AT1G32870.2 50.769 130 58 3 15 142 10 135 4.26e-33 130
Msa1286420 AT1G32870.1 50.769 130 58 3 15 142 10 135 5.07e-33 130
Msa1286420 AT1G32870.3 50.769 130 58 3 15 142 46 171 9.46e-33 129
Msa1286420 AT5G22380.1 35.052 194 105 8 18 204 8 187 1.41e-30 117
Msa1286420 AT4G10350.2 33.473 239 118 8 62 293 12 216 1.95e-30 119
Msa1286420 AT5G64530.1 39.264 163 82 3 17 174 5 155 4.97e-30 114
Msa1286420 AT3G44350.2 35.429 175 95 5 11 178 1 164 2.00e-29 114
Msa1286420 AT3G12977.2 45.833 120 55 3 60 179 10 119 4.44e-29 113
Msa1286420 AT1G56010.1 49.138 116 43 3 63 174 1 104 6.89e-29 113
Msa1286420 AT5G64530.2 43.307 127 60 2 17 143 5 119 1.11e-28 110
Msa1286420 AT4G01550.1 43.284 134 72 3 16 145 5 138 2.17e-28 116
Msa1286420 AT3G44350.1 38.000 150 83 4 11 153 1 147 6.51e-28 108
Msa1286420 AT4G01520.1 34.737 190 102 7 18 202 7 179 6.97e-25 103
Msa1286420 AT4G01540.3 41.481 135 74 4 16 145 5 139 1.57e-24 104
Msa1286420 AT4G01540.4 40.411 146 79 5 16 156 5 147 2.64e-24 103
Msa1286420 AT4G01540.1 41.481 135 74 4 16 145 5 139 3.64e-24 104
Msa1286420 AT4G01540.2 40.411 146 79 5 16 156 5 147 4.44e-24 103
Msa1286420 AT1G02250.1 34.673 199 113 8 18 211 6 192 3.46e-23 100
Msa1286420 AT4G28530.2 40.476 126 59 2 17 126 12 137 2.87e-22 96.7
Msa1286420 AT1G02230.1 38.806 134 74 5 18 146 6 136 1.01e-21 95.9
Msa1286420 AT3G04420.2 38.583 127 72 3 18 140 6 130 5.66e-21 92.8
Msa1286420 AT2G33480.3 42.056 107 51 3 68 174 8 103 6.01e-21 90.9
Msa1286420 AT2G18060.2 47.368 95 36 4 93 187 2 82 1.03e-20 91.7
Msa1286420 AT3G04420.1 38.583 127 72 3 18 140 6 130 2.17e-20 92.0
Msa1286420 AT1G01010.1 28.077 260 158 8 18 265 6 248 2.16e-18 87.0
Msa1286420 AT1G02220.1 37.795 127 70 4 18 140 6 127 8.54e-17 82.0
Msa1286420 AT5G50820.1 36.641 131 71 5 17 144 19 140 8.30e-16 75.9
Msa1286420 AT3G04430.1 36.842 133 70 5 21 141 6 136 2.77e-15 74.3
Msa1286420 AT5G14000.2 31.579 133 85 3 18 148 18 146 1.22e-14 71.6
Msa1286420 AT5G14000.1 27.108 166 103 4 18 181 18 167 1.67e-14 72.4
Msa1286420 AT3G56530.1 30.189 159 95 5 17 172 54 199 2.41e-14 73.9
Msa1286420 AT3G10490.4 38.202 89 45 3 88 176 2 80 6.85e-14 72.8
Msa1286420 AT3G10490.3 38.202 89 45 3 88 176 2 80 6.85e-14 72.8
Msa1286420 AT5G22290.2 36.957 92 38 3 94 182 2 76 4.27e-12 66.2

Find 95 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCAATGGATCAATAAT+TGG 0.177383 8_3:+34263385 None:intergenic
TGAAATTGGTAACCGGTATA+AGG 0.232151 8_3:+34263357 None:intergenic
TTAGGAATGTTAGCCATTAA+TGG 0.250578 8_3:+34263166 None:intergenic
GTCTTGTCTACATATTTCTT+TGG 0.251750 8_3:+34264494 None:intergenic
CCAGCTCTTGTTACCCTATT+AGG 0.256540 8_3:+34264689 None:intergenic
TCATGTTTGAGGAACAAAAT+TGG 0.264318 8_3:+34263539 None:intergenic
CTTGAAGAGGTTATGCTTCC+AGG 0.267006 8_3:-34265562 Msa1286420:CDS
AGATCTTGATCATTTGAAAT+TGG 0.267969 8_3:+34263343 None:intergenic
CAATAATGAGTATCCATTAA+TGG 0.279268 8_3:-34263179 Msa1286420:CDS
ATTATAAGATGGAACATCTA+AGG 0.299587 8_3:+34263411 None:intergenic
TATTCAACTTGTAGGAATCT+TGG 0.308891 8_3:-34263684 Msa1286420:intron
TTCCTGTACTTTCTGTCTCT+TGG 0.313082 8_3:+34264722 None:intergenic
GGAACAGTGCAAGACCTAAT+AGG 0.314506 8_3:-34264703 Msa1286420:CDS
GGGTAACAAGAGCTGGGTTT+TGG 0.314918 8_3:-34264682 Msa1286420:CDS
AGGTTATGCTTCCAGGGTTT+AGG 0.326370 8_3:-34265555 Msa1286420:CDS
GGAAGTCATCAAGTCTTGTT+TGG 0.332787 8_3:-34263048 Msa1286420:CDS
TTCAGTGTGCCTCTCAATAT+TGG 0.343215 8_3:-34263079 Msa1286420:CDS
ACACGAGGCACGTTCGCATT+AGG 0.344052 8_3:+34263148 None:intergenic
CCAACTGATGAAGAACTTGT+TGG 0.382953 8_3:-34265526 Msa1286420:CDS
GAACCCTCTGAGGAATAAAT+AGG 0.385421 8_3:+34264638 None:intergenic
GAAATTGGTAACCGGTATAA+GGG 0.389296 8_3:+34263358 None:intergenic
ATTCAACTTGTAGGAATCTT+GGG 0.394429 8_3:-34263683 Msa1286420:intron
TGTATAGAGTTGGCAAGTAC+AGG 0.404014 8_3:-34264770 Msa1286420:intron
CTTTGTTAACATCATGTTTG+AGG 0.406276 8_3:+34263528 None:intergenic
TCAGAGGGTTCTAAGTGTAT+TGG 0.407108 8_3:-34264626 Msa1286420:CDS
AAGAGGTTAAGTGTTGTGTT+AGG 0.408400 8_3:+34263455 None:intergenic
ATGGATACTCATTATTGTAA+TGG 0.423638 8_3:+34263185 None:intergenic
TACTACCAAGTGTTATACTT+AGG 0.432517 8_3:-34262984 None:intergenic
GATCATTTGAAATTGGTAAC+CGG 0.434751 8_3:+34263350 None:intergenic
ACTACCAAGTGTTATACTTA+GGG 0.437461 8_3:-34262983 None:intergenic
TCTACCTTTGTAGAAAACTA+AGG 0.437881 8_3:+34264592 None:intergenic
TTGGATACGGTTCGACCCAT+TGG 0.444276 8_3:-34263109 Msa1286420:CDS
GAACAGTGCAAGACCTAATA+GGG 0.447391 8_3:-34264702 Msa1286420:CDS
ATAATTGGATTATTATAAGA+TGG 0.450751 8_3:+34263400 None:intergenic
ATCTTGTAACAAAACTTCAA+TGG 0.456838 8_3:-34263278 Msa1286420:CDS
GAAGTCATCAAGTCTTGTTT+GGG 0.460153 8_3:-34263047 Msa1286420:CDS
GAGGTTGATGTTTCAAGTAA+AGG 0.463138 8_3:+34263592 None:intergenic
CCTAATAGGGTAACAAGAGC+TGG 0.463143 8_3:-34264689 Msa1286420:CDS
TATAAGGGTTTGTAAATCAA+TGG 0.465297 8_3:+34263373 None:intergenic
ATATGTAGACAAGACCATTC+CGG 0.469723 8_3:-34264486 Msa1286420:CDS
CCAAAGGAGTCAAAACTGAT+TGG 0.471412 8_3:-34264565 Msa1286420:CDS
ATATTTATAAATTTGATCCA+TGG 0.478110 8_3:-34265441 Msa1286420:CDS
AAAGAGCTCTCTCTCACTCA+TGG 0.486372 8_3:-34263621 Msa1286420:CDS
TATTTATAAATTTGATCCAT+GGG 0.487821 8_3:-34265440 Msa1286420:CDS
CCAACAAGTTCTTCATCAGT+TGG 0.490455 8_3:+34265526 None:intergenic
ATCATTTGTTAGAACATTGG+AGG 0.492381 8_3:+34263573 None:intergenic
TAGGATATGGAAGAGAGAAA+TGG 0.494544 8_3:-34265598 None:intergenic
ATATTGAGAGGCACACTGAA+TGG 0.495510 8_3:+34263082 None:intergenic
TGCATCATTTGTTAGAACAT+TGG 0.496772 8_3:+34263570 None:intergenic
TTTACTTACATTGGCCGGAA+TGG 0.497789 8_3:+34264472 None:intergenic
TGATTTACAAACCCTTATAC+CGG 0.505584 8_3:-34263369 Msa1286420:CDS
AGCTCTTTGAGCGGTAGCAT+TGG 0.506153 8_3:+34263636 None:intergenic
TATTGAGAGGCACACTGAAT+GGG 0.507464 8_3:+34263083 None:intergenic
CTAGAGTGACTTGCAAAGCT+AGG 0.507948 8_3:+34263502 None:intergenic
GTCTTACTTGGTAGATCCCA+TGG 0.514805 8_3:+34265424 None:intergenic
AGGAATCTTGGGCAATATGC+AGG 0.518840 8_3:-34263672 Msa1286420:CDS
TTGAAGAGGTTATGCTTCCA+GGG 0.523265 8_3:-34265561 Msa1286420:CDS
TGTTGATGATCAACAAGAGT+TGG 0.526593 8_3:-34263128 Msa1286420:CDS
AGTGTTGTGTTAGGTTATTG+TGG 0.533214 8_3:+34263464 None:intergenic
TTGAGGAACAAAATTGGTTG+TGG 0.548581 8_3:+34263545 None:intergenic
GATGATGAATCTATGAGAGA+AGG 0.549029 8_3:+34264521 None:intergenic
AGACCTATTTATTCCTCAGA+GGG 0.557263 8_3:-34264641 Msa1286420:CDS
CAAGATCTTAACCTTAGCAC+TGG 0.557408 8_3:-34263328 Msa1286420:CDS
ACACTGAATGGGAATCCAAT+GGG 0.562023 8_3:+34263094 None:intergenic
GTTGATGTTTCAAGTAAAGG+TGG 0.562150 8_3:+34263595 None:intergenic
AAGTGTAGTACTACTAGAAG+AGG 0.565912 8_3:+34263438 None:intergenic
GTATAGAGTTGGCAAGTACA+GGG 0.573043 8_3:-34264769 Msa1286420:intron
AAGAGCTCTCTCTCACTCAT+GGG 0.573676 8_3:-34263620 Msa1286420:CDS
TTATAAGATGGAACATCTAA+GGG 0.574187 8_3:+34263412 None:intergenic
TTGTTACAAGATGTTTCAAG+AGG 0.576354 8_3:+34263289 None:intergenic
GGGTTCATCAGAAGTACAAG+AGG 0.581707 8_3:+34263018 None:intergenic
CACACTGAATGGGAATCCAA+TGG 0.582826 8_3:+34263093 None:intergenic
CAAGTACAGGGGAGAAAGAG+TGG 0.591955 8_3:-34264757 Msa1286420:CDS
TGATCAACAAGAGTTGGATA+CGG 0.594638 8_3:-34263122 Msa1286420:CDS
GTAACAACTTCAAACTACAT+TGG 0.595345 8_3:-34263220 Msa1286420:CDS
CTAATAGGGTAACAAGAGCT+GGG 0.601926 8_3:-34264688 Msa1286420:CDS
CAGACCTATTTATTCCTCAG+AGG 0.608250 8_3:-34264642 Msa1286420:CDS
TTGATGTTTCAAGTAAAGGT+GGG 0.610295 8_3:+34263596 None:intergenic
CTCTCAATATTGGTGATGCA+TGG 0.610941 8_3:-34263069 Msa1286420:CDS
GTCCAAGAGACAGAAAGTAC+AGG 0.615144 8_3:-34264724 Msa1286420:CDS
AGAATACTAAGCCAGTGCTA+AGG 0.618095 8_3:+34263317 None:intergenic
GTTGGATGAAACCTAAACCC+TGG 0.628808 8_3:+34265544 None:intergenic
CATGCATCACCAATATTGAG+AGG 0.634336 8_3:+34263070 None:intergenic
AGATGACATACCTAATAGCA+AGG 0.639338 8_3:+34263246 None:intergenic
TTGATGAGCTCAATAGCAAG+AGG 0.641698 8_3:+34265472 None:intergenic
TACTTGTGAGAAACTTGAAG+AGG 0.650571 8_3:-34265575 Msa1286420:CDS
GTGAGAGAGAGCTCTTTGAG+CGG 0.660538 8_3:+34263627 None:intergenic
CTTGGTAGTAGAATAACTAG+AGG 0.660558 8_3:+34262997 None:intergenic
TACAAAGGTAGAGCTGCCAA+AGG 0.667663 8_3:-34264581 Msa1286420:CDS
TAAACCCTAAGTATAACACT+TGG 0.675221 8_3:+34262979 None:intergenic
TGATGAGCTCAATAGCAAGA+GGG 0.682356 8_3:+34265473 None:intergenic
TATAGAGTTGGCAAGTACAG+GGG 0.692122 8_3:-34264768 Msa1286420:intron
TTGGTAGTAGAATAACTAGA+GGG 0.705649 8_3:+34262998 None:intergenic
AATACACTTAGAACCCTCTG+AGG 0.742862 8_3:+34264628 None:intergenic
TCTTGTTGATCATCAACACG+AGG 0.747637 8_3:+34263133 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTATAAATTTGATCCA+TGG - chr8_3:34263136-34263155 Msa1286420:CDS 15.0%
!! TATTTATAAATTTGATCCAT+GGG - chr8_3:34263137-34263156 Msa1286420:CDS 15.0%
!!! TTATTATATCTTTTGTTATC+AGG - chr8_3:34263528-34263547 Msa1286420:CDS 15.0%
!!! CATTTTCTATTTTTTAAACA+TGG + chr8_3:34264567-34264586 None:intergenic 15.0%
!!! GTAATTATTTTTTTAACAAG+TGG + chr8_3:34264812-34264831 None:intergenic 15.0%
!! GAATAACATTTAATATTAGT+CGG + chr8_3:34264878-34264897 None:intergenic 15.0%
!! ATAATTGGATTATTATAAGA+TGG + chr8_3:34265180-34265199 None:intergenic 15.0%
!! TAAAAAGTAAAGTGATAAAG+AGG + chr8_3:34263263-34263282 None:intergenic 20.0%
!! CTTATTTACATAAACTCTTT+AGG - chr8_3:34263464-34263483 Msa1286420:CDS 20.0%
!! TATATTTAGTTAGAACTTGT+TGG - chr8_3:34264143-34264162 Msa1286420:intron 20.0%
!!! TTTTATAGATCTTGTTAGAA+TGG - chr8_3:34264171-34264190 Msa1286420:intron 20.0%
!! TGTGTGTAAATAATATATGT+TGG - chr8_3:34264280-34264299 Msa1286420:intron 20.0%
!! GTGTGTAAATAATATATGTT+GGG - chr8_3:34264281-34264300 Msa1286420:intron 20.0%
!! ATTAGTAAAGTTATGGTATT+TGG - chr8_3:34264470-34264489 Msa1286420:intron 20.0%
!! GATAAAATGGAATGTTAAAT+AGG - chr8_3:34264664-34264683 Msa1286420:CDS 20.0%
!! AATAGGTATATAAGAAATTG+AGG - chr8_3:34264681-34264700 Msa1286420:CDS 20.0%
!! TTAAATGTTATTCAACTTGT+AGG - chr8_3:34264885-34264904 Msa1286420:intron 20.0%
!! TAAATCAATGGATCAATAAT+TGG + chr8_3:34265195-34265214 None:intergenic 20.0%
! AAAGTGATAAACACATCTAA+GGG + chr8_3:34263209-34263228 None:intergenic 25.0%
! TATATGTAAGTTACACATCT+AGG + chr8_3:34263329-34263348 None:intergenic 25.0%
! TCAAATAAATCAATCGAAAG+AGG + chr8_3:34263359-34263378 None:intergenic 25.0%
! TTCATAAGTGTTTATACTAC+TGG + chr8_3:34263388-34263407 None:intergenic 25.0%
! TTATCCAAATATCGTACTAT+AGG - chr8_3:34263714-34263733 Msa1286420:intron 25.0%
!!! GTTAAGACTTTTTGTTATCT+TGG - chr8_3:34263746-34263765 Msa1286420:intron 25.0%
!! TGATATTTTGTGTATAGAGT+TGG - chr8_3:34263797-34263816 Msa1286420:intron 25.0%
!!! AAATCCTTAGTTTTCTACAA+AGG - chr8_3:34263981-34264000 Msa1286420:intron 25.0%
!! GGAAGTAATTTTACTTACAT+TGG + chr8_3:34264117-34264136 None:intergenic 25.0%
! TTCTAACTAAATATAGCTCT+TGG + chr8_3:34264138-34264157 None:intergenic 25.0%
! ATGAGTCATTAGTAAAGTTA+TGG - chr8_3:34264463-34264482 Msa1286420:intron 25.0%
! TAACCTAAAATGCAATAAGT+CGG - chr8_3:34264504-34264523 Msa1286420:CDS 25.0%
! GAAGAGAGATATAGATAAAA+TGG - chr8_3:34264651-34264670 Msa1286420:CDS 25.0%
!!! ATAATTGGGTCATTTTGAAT+CGG + chr8_3:34264761-34264780 None:intergenic 25.0%
!! CAAAATGACCCAATTATTTT+CGG - chr8_3:34264764-34264783 Msa1286420:CDS 25.0%
!! AAAATGACCCAATTATTTTC+GGG - chr8_3:34264765-34264784 Msa1286420:CDS 25.0%
! TTATAAGATGGAACATCTAA+GGG + chr8_3:34265168-34265187 None:intergenic 25.0%
! ATTATAAGATGGAACATCTA+AGG + chr8_3:34265169-34265188 None:intergenic 25.0%
! TATAAGGGTTTGTAAATCAA+TGG + chr8_3:34265207-34265226 None:intergenic 25.0%
!! AGATCTTGATCATTTGAAAT+TGG + chr8_3:34265237-34265256 None:intergenic 25.0%
! ATCTTGTAACAAAACTTCAA+TGG - chr8_3:34265299-34265318 Msa1286420:intron 25.0%
! ATGGATACTCATTATTGTAA+TGG + chr8_3:34265395-34265414 None:intergenic 25.0%
! CAATAATGAGTATCCATTAA+TGG - chr8_3:34265398-34265417 Msa1286420:intron 25.0%
!!! GTTGCTGAATTTTTTTCTTC+AGG + chr8_3:34263083-34263102 None:intergenic 30.0%
CAAAGTGATAAACACATCTA+AGG + chr8_3:34263210-34263229 None:intergenic 30.0%
! ACAATTTAAGACATGTGCAT+AGG - chr8_3:34263431-34263450 Msa1286420:CDS 30.0%
ACTACCTATAGTACGATATT+TGG + chr8_3:34263721-34263740 None:intergenic 30.0%
TCTACCTTTGTAGAAAACTA+AGG + chr8_3:34263988-34264007 None:intergenic 30.0%
GTCTTGTCTACATATTTCTT+TGG + chr8_3:34264086-34264105 None:intergenic 30.0%
! GTAATTTTACTTACATTGGC+CGG + chr8_3:34264113-34264132 None:intergenic 30.0%
CATTTGACAAATAATCCAGT+AGG - chr8_3:34264252-34264271 Msa1286420:intron 30.0%
GATTATGTGTGTATTTGGAT+CGG - chr8_3:34264305-34264324 Msa1286420:intron 30.0%
! AATCACATCAAAAGTGCATT+GGG + chr8_3:34264354-34264373 None:intergenic 30.0%
! AAATCACATCAAAAGTGCAT+TGG + chr8_3:34264355-34264374 None:intergenic 30.0%
CATGATATACTATAGACCAT+TGG + chr8_3:34264446-34264465 None:intergenic 30.0%
!!! TATTGCATTTTAGGTTAGAC+TGG + chr8_3:34264501-34264520 None:intergenic 30.0%
! AATCCGACTTATTGCATTTT+AGG + chr8_3:34264510-34264529 None:intergenic 30.0%
TGATAATTTGACGATGTCAT+AGG - chr8_3:34264629-34264648 Msa1286420:CDS 30.0%
TATTCAACTTGTAGGAATCT+TGG - chr8_3:34264893-34264912 Msa1286420:intron 30.0%
ATTCAACTTGTAGGAATCTT+GGG - chr8_3:34264894-34264913 Msa1286420:intron 30.0%
! TTGATGTTTCAAGTAAAGGT+GGG + chr8_3:34264984-34265003 None:intergenic 30.0%
! ATCATTTGTTAGAACATTGG+AGG + chr8_3:34265007-34265026 None:intergenic 30.0%
! TGCATCATTTGTTAGAACAT+TGG + chr8_3:34265010-34265029 None:intergenic 30.0%
TCATGTTTGAGGAACAAAAT+TGG + chr8_3:34265041-34265060 None:intergenic 30.0%
CTTTGTTAACATCATGTTTG+AGG + chr8_3:34265052-34265071 None:intergenic 30.0%
TGATTTACAAACCCTTATAC+CGG - chr8_3:34265208-34265227 Msa1286420:intron 30.0%
! GATCATTTGAAATTGGTAAC+CGG + chr8_3:34265230-34265249 None:intergenic 30.0%
TTGTTACAAGATGTTTCAAG+AGG + chr8_3:34265291-34265310 None:intergenic 30.0%
!!! GATTTTTCTTCCTTGCTATT+AGG - chr8_3:34265321-34265340 Msa1286420:intron 30.0%
GTAACAACTTCAAACTACAT+TGG - chr8_3:34265357-34265376 Msa1286420:intron 30.0%
TTAGGAATGTTAGCCATTAA+TGG + chr8_3:34265414-34265433 None:intergenic 30.0%
! TTGGTAGTAGAATAACTAGA+GGG + chr8_3:34265582-34265601 None:intergenic 30.0%
TACTTGTGAGAAACTTGAAG+AGG - chr8_3:34263002-34263021 Msa1286420:CDS 35.0%
GCACTATTATGAGTCTTACT+TGG + chr8_3:34263168-34263187 None:intergenic 35.0%
GTGATAAAGAGGTCAAATAC+TGG + chr8_3:34263252-34263271 None:intergenic 35.0%
AATATAAGGTTCGCTTGATG+TGG + chr8_3:34263301-34263320 None:intergenic 35.0%
ACATCTAGGTAGGGAATATA+AGG + chr8_3:34263315-34263334 None:intergenic 35.0%
GTAAGTTACACATCTAGGTA+GGG + chr8_3:34263324-34263343 None:intergenic 35.0%
TGTAAGTTACACATCTAGGT+AGG + chr8_3:34263325-34263344 None:intergenic 35.0%
AGACCTATTTATTCCTCAGA+GGG - chr8_3:34263936-34263955 Msa1286420:intron 35.0%
GATGATGAATCTATGAGAGA+AGG + chr8_3:34264059-34264078 None:intergenic 35.0%
ATATGTAGACAAGACCATTC+CGG - chr8_3:34264091-34264110 Msa1286420:intron 35.0%
TTTACACACACTTAACCTAC+TGG + chr8_3:34264270-34264289 None:intergenic 35.0%
TGGGAGATTATGTGTGTATT+TGG - chr8_3:34264300-34264319 Msa1286420:intron 35.0%
GATATACTATAGACCATTGG+AGG + chr8_3:34264443-34264462 None:intergenic 35.0%
ACTTTGGCCCGAAAATAATT+GGG + chr8_3:34264775-34264794 None:intergenic 35.0%
GGAACTCAAATGTATCACTT+TGG + chr8_3:34264791-34264810 None:intergenic 35.0%
! GTTGATGTTTCAAGTAAAGG+TGG + chr8_3:34264985-34265004 None:intergenic 35.0%
!! GAGGTTGATGTTTCAAGTAA+AGG + chr8_3:34264988-34265007 None:intergenic 35.0%
TTGAGGAACAAAATTGGTTG+TGG + chr8_3:34265035-34265054 None:intergenic 35.0%
AGTGTTGTGTTAGGTTATTG+TGG + chr8_3:34265116-34265135 None:intergenic 35.0%
! AAGAGGTTAAGTGTTGTGTT+AGG + chr8_3:34265125-34265144 None:intergenic 35.0%
AAGTGTAGTACTACTAGAAG+AGG + chr8_3:34265142-34265161 None:intergenic 35.0%
! GAAATTGGTAACCGGTATAA+GGG + chr8_3:34265222-34265241 None:intergenic 35.0%
! TGAAATTGGTAACCGGTATA+AGG + chr8_3:34265223-34265242 None:intergenic 35.0%
AGATGACATACCTAATAGCA+AGG + chr8_3:34265334-34265353 None:intergenic 35.0%
!! TGTTGATGATCAACAAGAGT+TGG - chr8_3:34265449-34265468 Msa1286420:CDS 35.0%
TGATCAACAAGAGTTGGATA+CGG - chr8_3:34265455-34265474 Msa1286420:CDS 35.0%
!! GAAGTCATCAAGTCTTGTTT+GGG - chr8_3:34265530-34265549 Msa1286420:CDS 35.0%
! CTTGGTAGTAGAATAACTAG+AGG + chr8_3:34265583-34265602 None:intergenic 35.0%
TTGAAGAGGTTATGCTTCCA+GGG - chr8_3:34263016-34263035 Msa1286420:CDS 40.0%
CCAACAAGTTCTTCATCAGT+TGG + chr8_3:34263054-34263073 None:intergenic 40.0%
CCAACTGATGAAGAACTTGT+TGG - chr8_3:34263051-34263070 Msa1286420:CDS 40.0%
TGATGAGCTCAATAGCAAGA+GGG + chr8_3:34263107-34263126 None:intergenic 40.0%
TTGATGAGCTCAATAGCAAG+AGG + chr8_3:34263108-34263127 None:intergenic 40.0%
TGTATAGAGTTGGCAAGTAC+AGG - chr8_3:34263807-34263826 Msa1286420:intron 40.0%
GTATAGAGTTGGCAAGTACA+GGG - chr8_3:34263808-34263827 Msa1286420:intron 40.0%
TATAGAGTTGGCAAGTACAG+GGG - chr8_3:34263809-34263828 Msa1286420:intron 40.0%
TTCCTGTACTTTCTGTCTCT+TGG + chr8_3:34263858-34263877 None:intergenic 40.0%
GAACAGTGCAAGACCTAATA+GGG - chr8_3:34263875-34263894 Msa1286420:intron 40.0%
CTAATAGGGTAACAAGAGCT+GGG - chr8_3:34263889-34263908 Msa1286420:intron 40.0%
CAGACCTATTTATTCCTCAG+AGG - chr8_3:34263935-34263954 Msa1286420:intron 40.0%
! GAACCCTCTGAGGAATAAAT+AGG + chr8_3:34263942-34263961 None:intergenic 40.0%
AATACACTTAGAACCCTCTG+AGG + chr8_3:34263952-34263971 None:intergenic 40.0%
!! TCAGAGGGTTCTAAGTGTAT+TGG - chr8_3:34263951-34263970 Msa1286420:intron 40.0%
!!! CCAATCAGTTTTGACTCCTT+TGG + chr8_3:34264015-34264034 None:intergenic 40.0%
CCAAAGGAGTCAAAACTGAT+TGG - chr8_3:34264012-34264031 Msa1286420:intron 40.0%
TTTACTTACATTGGCCGGAA+TGG + chr8_3:34264108-34264127 None:intergenic 40.0%
CACTTTGGCCCGAAAATAAT+TGG + chr8_3:34264776-34264795 None:intergenic 40.0%
CAAGATCTTAACCTTAGCAC+TGG - chr8_3:34265249-34265268 Msa1286420:intron 40.0%
AGAATACTAAGCCAGTGCTA+AGG + chr8_3:34265263-34265282 None:intergenic 40.0%
TCTTGTTGATCATCAACACG+AGG + chr8_3:34265447-34265466 None:intergenic 40.0%
ACACTGAATGGGAATCCAAT+GGG + chr8_3:34265486-34265505 None:intergenic 40.0%
! TATTGAGAGGCACACTGAAT+GGG + chr8_3:34265497-34265516 None:intergenic 40.0%
! ATATTGAGAGGCACACTGAA+TGG + chr8_3:34265498-34265517 None:intergenic 40.0%
TTCAGTGTGCCTCTCAATAT+TGG - chr8_3:34265498-34265517 Msa1286420:CDS 40.0%
CATGCATCACCAATATTGAG+AGG + chr8_3:34265510-34265529 None:intergenic 40.0%
!! CTCTCAATATTGGTGATGCA+TGG - chr8_3:34265508-34265527 Msa1286420:CDS 40.0%
!! GGAAGTCATCAAGTCTTGTT+TGG - chr8_3:34265529-34265548 Msa1286420:CDS 40.0%
CTTGAAGAGGTTATGCTTCC+AGG - chr8_3:34263015-34263034 Msa1286420:CDS 45.0%
AGGTTATGCTTCCAGGGTTT+AGG - chr8_3:34263022-34263041 Msa1286420:CDS 45.0%
GTTGGATGAAACCTAAACCC+TGG + chr8_3:34263036-34263055 None:intergenic 45.0%
GTCTTACTTGGTAGATCCCA+TGG + chr8_3:34263156-34263175 None:intergenic 45.0%
! GTCCAAGAGACAGAAAGTAC+AGG - chr8_3:34263853-34263872 Msa1286420:intron 45.0%
GGAACAGTGCAAGACCTAAT+AGG - chr8_3:34263874-34263893 Msa1286420:intron 45.0%
CCAGCTCTTGTTACCCTATT+AGG + chr8_3:34263891-34263910 None:intergenic 45.0%
CCTAATAGGGTAACAAGAGC+TGG - chr8_3:34263888-34263907 Msa1286420:intron 45.0%
TACAAAGGTAGAGCTGCCAA+AGG - chr8_3:34263996-34264015 Msa1286420:intron 45.0%
GTGCGTTTCTGTTCCAAACA+GGG - chr8_3:34264409-34264428 Msa1286420:intron 45.0%
TGCGTTTCTGTTCCAAACAG+GGG - chr8_3:34264410-34264429 Msa1286420:intron 45.0%
TGCAATAAGTCGGATTGAGC+TGG - chr8_3:34264514-34264533 Msa1286420:CDS 45.0%
AGGAATCTTGGGCAATATGC+AGG - chr8_3:34264905-34264924 Msa1286420:intron 45.0%
AAAGAGCTCTCTCTCACTCA+TGG - chr8_3:34264956-34264975 Msa1286420:intron 45.0%
AAGAGCTCTCTCTCACTCAT+GGG - chr8_3:34264957-34264976 Msa1286420:intron 45.0%
! CTAGAGTGACTTGCAAAGCT+AGG + chr8_3:34265078-34265097 None:intergenic 45.0%
CACACTGAATGGGAATCCAA+TGG + chr8_3:34265487-34265506 None:intergenic 45.0%
! GGGTTCATCAGAAGTACAAG+AGG + chr8_3:34265562-34265581 None:intergenic 45.0%
CAAGTACAGGGGAGAAAGAG+TGG - chr8_3:34263820-34263839 Msa1286420:intron 50.0%
! GGGTAACAAGAGCTGGGTTT+TGG - chr8_3:34263895-34263914 Msa1286420:intron 50.0%
!!! GCTGGGTTTTGGAAAGCAAC+AGG - chr8_3:34263906-34263925 Msa1286420:intron 50.0%
CGTGCGTTTCTGTTCCAAAC+AGG - chr8_3:34264408-34264427 Msa1286420:intron 50.0%
GGAGGATTATAGCCCCTGTT+TGG + chr8_3:34264425-34264444 None:intergenic 50.0%
CAGGGGCTATAATCCTCCAA+TGG - chr8_3:34264427-34264446 Msa1286420:intron 50.0%
AGCTCTTTGAGCGGTAGCAT+TGG + chr8_3:34264944-34264963 None:intergenic 50.0%
GTGAGAGAGAGCTCTTTGAG+CGG + chr8_3:34264953-34264972 None:intergenic 50.0%
TTGGATACGGTTCGACCCAT+TGG - chr8_3:34265468-34265487 Msa1286420:CDS 50.0%
ACACGAGGCACGTTCGCATT+AGG + chr8_3:34265432-34265451 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 34262985 34265614 34262985 ID=Msa1286420;Name=Msa1286420
chr8_3 mRNA 34262985 34265614 34262985 ID=Msa1286420-mRNA-1;Parent=Msa1286420;Name=Msa1286420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|398
chr8_3 exon 34265431 34265614 34265431 ID=Msa1286420-mRNA-1:exon:10227;Parent=Msa1286420-mRNA-1
chr8_3 exon 34264481 34264785 34264481 ID=Msa1286420-mRNA-1:exon:10226;Parent=Msa1286420-mRNA-1
chr8_3 exon 34262985 34263692 34262985 ID=Msa1286420-mRNA-1:exon:10225;Parent=Msa1286420-mRNA-1
chr8_3 CDS 34265431 34265614 34265431 ID=Msa1286420-mRNA-1:cds;Parent=Msa1286420-mRNA-1
chr8_3 CDS 34264481 34264785 34264481 ID=Msa1286420-mRNA-1:cds;Parent=Msa1286420-mRNA-1
chr8_3 CDS 34262985 34263692 34262985 ID=Msa1286420-mRNA-1:cds;Parent=Msa1286420-mRNA-1
Gene Sequence

>Msa1286420

ATGGAAGAGAGAAATGGTACTTGTGAGAAACTTGAAGAGGTTATGCTTCCAGGGTTTAGGTTTCATCCAACTGATGAAGAACTTGTTGGATTTTACCTGAAGAAAAAAATTCAGCAACGCCCTCTTGCTATTGAGCTCATCAAGCAGCTTGATATTTATAAATTTGATCCATGGGATCTACCAAAGTTGGCAAGTACAGGGGAGAAAGAGTGGTATTTTTACTGTCCAAGAGACAGAAAGTACAGGAACAGTGCAAGACCTAATAGGGTAACAAGAGCTGGGTTTTGGAAAGCAACAGGAACAGACAGACCTATTTATTCCTCAGAGGGTTCTAAGTGTATTGGCTTGAAAAAATCCTTAGTTTTCTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGATTGGATGATGCATGAGTTTAGACTACCTTCTCTCATAGATTCATCATCATCTCCAAAGAAATATGTAGACAAGACCATTCCGGCCAATGAATCTTGGGCAATATGCAGGATATTCAAGAAAACCAATGCTACCGCTCAAAGAGCTCTCTCTCACTCATGGGTCCCACCTTTACTTGAAACATCAACCTCCAATGTTCTAACAAATGATGCAAACCACAACCAATTTTGTTCCTCAAACATGATGTTAACAAAGAAACCTAGCTTTGCAAGTCACTCTAGTACTACTACTAATAACCACAATAACCTAACACAACACTTAACCTCTTCTAGTAGTACTACACTTTGTCCCTTAGATGTTCCATCTTATAATAATCCAATTATTGATCCATTGATTTACAAACCCTTATACCGGTTACCAATTTCAAATGATCAAGATCTTAACCTTAGCACTGGCTTAGTATTCTCATCTCCTCTTGAAACATCTTGTAACAAAACTTCAATGGATTTTTCTTCCTTGCTATTAGGTATGTCATCTGAAGTAACAACTTCAAACTACATTGGTAATTTACAAGACCATTACAATAATGAGTATCCATTAATGGCTAACATTCCTAATGCGAACGTGCCTCGTGTTGATGATCAACAAGAGTTGGATACGGTTCGACCCATTGGATTCCCATTCAGTGTGCCTCTCAATATTGGTGATGCATGGAAGTCATCAAGTCTTGTTTGGGATACTTCCTCTTGTACTTCTGATGAACCCTCTAGTTATTCTACTACCAAGTGTTATACTTAG

Protein sequence

>Msa1286420

MEERNGTCEKLEEVMLPGFRFHPTDEELVGFYLKKKIQQRPLAIELIKQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSARPNRVTRAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLIDSSSSPKKYVDKTIPANESWAICRIFKKTNATAQRALSHSWVPPLLETSTSNVLTNDANHNQFCSSNMMLTKKPSFASHSSTTTNNHNNLTQHLTSSSSTTLCPLDVPSYNNPIIDPLIYKPLYRLPISNDQDLNLSTGLVFSSPLETSCNKTSMDFSSLLLGMSSEVTTSNYIGNLQDHYNNEYPLMANIPNANVPRVDDQQELDTVRPIGFPFSVPLNIGDAWKSSSLVWDTSSCTSDEPSSYSTTKCYT*