AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1214960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214960 MtrunA17_Chr4g0065041 96.000 250 8 1 1 248 3 252 0.0 497
Msa1214960 MtrunA17_Chr2g0297251 46.502 243 109 4 5 247 36 257 2.06e-64 201
Msa1214960 MtrunA17_Chr7g0230511 41.036 251 132 6 3 247 6 246 1.04e-59 189
Msa1214960 MtrunA17_Chr4g0040071 34.156 243 110 5 6 247 15 208 3.91e-40 137
Msa1214960 MtrunA17_Chr5g0395181 45.926 135 72 1 6 139 21 155 2.24e-39 135
Msa1214960 MtrunA17_Chr8g0366581 48.462 130 66 1 3 131 30 159 1.80e-38 134
Msa1214960 MtrunA17_Chr5g0411151 45.652 138 74 1 3 139 32 169 5.58e-37 130
Msa1214960 MtrunA17_Chr7g0265291 42.647 136 74 1 6 137 7 142 3.73e-33 119
Msa1214960 MtrunA17_Chr1g0179781 42.188 128 72 2 6 131 7 134 1.65e-29 110
Msa1214960 MtrunA17_Chr4g0052451 58.333 84 29 1 56 133 10 93 1.43e-28 104
Msa1214960 MtrunA17_Chr2g0320561 39.007 141 76 4 6 136 5 145 1.40e-24 98.2
Msa1214960 MtrunA17_Chr4g0052461 66.667 57 19 0 3 59 19 75 6.31e-23 89.0
Msa1214960 MtrunA17_Chr2g0320521 37.857 140 76 4 8 136 8 147 5.55e-21 88.2
Msa1214960 MtrunA17_Chr8g0392151 33.793 145 74 3 8 131 15 158 7.00e-21 88.2
Msa1214960 MtrunA17_Chr2g0320551 34.783 138 80 4 6 133 5 142 4.46e-20 84.3
Msa1214960 MtrunA17_Chr4g0020811 37.410 139 70 5 8 132 8 143 4.03e-19 81.3
Msa1214960 MtrunA17_Chr2g0308401 38.129 139 69 6 8 132 6 141 1.26e-18 80.1
Msa1214960 MtrunA17_Chr8g0386511 33.929 112 66 2 34 143 2 107 1.24e-14 69.3
Msa1214960 MtrunA17_Chr1g0161601 42.857 84 46 2 1 84 43 124 1.31e-12 63.5
Msa1214960 MtrunA17_Chr5g0434331 31.868 91 59 2 5 93 42 131 9.97e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1214960 AT2G12646.1 66.279 258 75 5 1 248 1 256 2.64e-117 336
Msa1214960 AT2G12646.2 66.279 258 75 5 1 248 1 256 2.64e-117 336
Msa1214960 AT2G12646.3 66.142 254 74 5 5 248 2 253 7.06e-115 330
Msa1214960 AT3G60670.1 46.185 249 116 5 6 247 7 244 1.39e-72 222
Msa1214960 AT1G31040.1 46.311 244 111 6 5 247 18 242 1.63e-60 191
Msa1214960 AT4G17900.1 32.669 251 108 5 3 247 31 226 8.90e-37 129
Msa1214960 AT1G32700.1 48.485 132 67 1 6 136 12 143 1.15e-36 129
Msa1214960 AT4G17900.2 32.669 251 108 5 3 247 17 212 1.26e-36 129
Msa1214960 AT1G21000.1 34.375 256 129 6 6 247 16 246 4.79e-35 125
Msa1214960 AT1G76590.1 32.922 243 147 3 6 247 18 245 5.26e-35 125
Msa1214960 AT1G21000.2 34.375 256 129 6 6 247 13 243 5.69e-35 125
Msa1214960 AT1G43000.2 43.077 130 73 1 6 134 16 145 1.20e-32 119
Msa1214960 AT1G43000.1 43.077 130 73 1 6 134 9 138 1.36e-32 118
Msa1214960 AT5G46710.3 41.985 131 74 2 3 131 9 139 6.66e-30 111
Msa1214960 AT5G46710.2 41.985 131 74 2 3 131 25 155 6.78e-30 110
Msa1214960 AT5G46710.1 41.985 131 74 2 3 131 25 155 8.59e-30 111
Msa1214960 AT2G01818.1 39.860 143 76 3 7 139 12 154 1.45e-28 108
Msa1214960 AT2G27930.3 41.844 141 71 3 4 133 2 142 3.47e-28 105
Msa1214960 AT2G27930.2 41.844 141 71 3 4 133 2 142 3.47e-28 105
Msa1214960 AT2G27930.1 41.429 140 71 3 4 132 2 141 8.75e-28 105
Msa1214960 AT2G27930.4 41.429 140 71 3 4 132 2 141 8.75e-28 105
Msa1214960 AT1G32700.2 49.020 102 51 1 36 136 3 104 2.45e-26 101
Msa1214960 AT2G27930.5 44.186 86 39 1 56 132 59 144 3.94e-17 77.4
Msa1214960 AT2G27930.6 44.186 86 39 1 56 132 59 144 3.94e-17 77.4
Msa1214960 AT2G01818.2 36.471 85 48 2 61 139 6 90 2.61e-12 63.5

Find 54 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTTTATTGCTATTATTAT+TGG 0.112766 8_1:-75921864 None:intergenic
CCAAGAGAGCAATGGATAAA+AGG 0.296836 8_1:-75921059 None:intergenic
CTTCCAACCATGCAGGCTTT+TGG 0.312977 8_1:-75920533 None:intergenic
TATACAGAAAAGTTCTTTGT+TGG 0.345795 8_1:+75920561 Msa1214960:CDS
AAGACCTTTCACCCTACTTA+AGG 0.378382 8_1:+75921627 Msa1214960:CDS
TAAAGTTTCTGATGAAGATA+TGG 0.401550 8_1:+75921880 Msa1214960:CDS
GATAGTCAGGACTTAATTGT+AGG 0.404339 8_1:-75921661 None:intergenic
AGTATGATTAGTAGAAGAAA+AGG 0.404960 8_1:+75921908 Msa1214960:CDS
AGCAATGGATAAAAGGTTCT+TGG 0.405041 8_1:-75921052 None:intergenic
GATCCAAGGAGTTCATATTC+AGG 0.410178 8_1:+75921746 Msa1214960:CDS
TTATCATGATGTTCTTAGAT+TGG 0.410755 8_1:+75920713 Msa1214960:CDS
TTCCTGATCCTTTGAATTGG+CGG 0.427487 8_1:-75921001 None:intergenic
TGGCATGCACAGAAATTGTT+AGG 0.429624 8_1:+75921798 Msa1214960:CDS
TCATATTCAGGATCATCATC+AGG 0.433500 8_1:+75921758 Msa1214960:CDS
TCTTGTGGAATTAGATAGTC+AGG 0.440473 8_1:-75921674 None:intergenic
AGTTTCCTGATCCTTTGAAT+TGG 0.442272 8_1:-75921004 None:intergenic
AAGTATGTGTGCAAAATTCA+TGG 0.453257 8_1:+75921841 Msa1214960:CDS
CTTCTTGATGAACACCACTT+TGG 0.453482 8_1:-75920967 None:intergenic
TTTGGCACTATTGATAGTAT+AGG 0.459040 8_1:-75920949 None:intergenic
AACCGCCAATTCAAAGGATC+AGG 0.462617 8_1:+75920999 Msa1214960:CDS
AAACCAAAAGCCTGCATGGT+TGG 0.480103 8_1:+75920530 Msa1214960:CDS
GGTCTTGCATATCCTTAAGT+AGG 0.485067 8_1:-75921639 None:intergenic
GATCCTGAATATGAACTCCT+TGG 0.501244 8_1:-75921749 None:intergenic
ATTGTTAGGAAGAGAAGAAG+TGG 0.501836 8_1:+75921812 Msa1214960:CDS
CCATTGCTCTCTTGGATGCA+AGG 0.504085 8_1:+75921067 Msa1214960:CDS
CTATCTAATTCCACAAGAGA+TGG 0.516025 8_1:+75921679 Msa1214960:CDS
TATCTAATTCCACAAGAGAT+GGG 0.519713 8_1:+75921680 Msa1214960:CDS
AATGACAAGGTCAACAATTG+TGG 0.532726 8_1:+75921715 Msa1214960:CDS
CCTCAAAACCGCCAATTCAA+AGG 0.532742 8_1:+75920993 Msa1214960:CDS
GTCTTGCATATCCTTAAGTA+GGG 0.540564 8_1:-75921638 None:intergenic
AGGCGGTGGTAGCGATGAGA+TGG 0.543611 8_1:-75920669 None:intergenic
AATGGATAAAAGGTTCTTGG+AGG 0.548499 8_1:-75921049 None:intergenic
ATAGTCAGGACTTAATTGTA+GGG 0.550330 8_1:-75921660 None:intergenic
TAAAGAGCTTCCAACCATGC+AGG 0.552228 8_1:-75920540 None:intergenic
TAACAAAGAGGAGATCTATG+AGG 0.552341 8_1:-75921935 None:intergenic
TATAGACTGCACCAATGTCC+AGG 0.557416 8_1:+75920752 Msa1214960:CDS
TACTATCAATAGTGCCAAAG+TGG 0.558364 8_1:+75920953 Msa1214960:CDS
ATCTAATTCCACAAGAGATG+GGG 0.572263 8_1:+75921681 Msa1214960:CDS
TTAGGAAGAGAAGAAGTGGA+TGG 0.575841 8_1:+75921816 Msa1214960:CDS
AGGGAAACCAAAAGCCTGCA+TGG 0.579853 8_1:+75920526 Msa1214960:intron
CATAACGACGAACTTGAAGA+AGG 0.581891 8_1:-75920689 None:intergenic
AACAAAGAGGAGATCTATGA+GGG 0.605762 8_1:-75921934 None:intergenic
GCTAACACTAATTAACAAAG+AGG 0.610407 8_1:-75921947 None:intergenic
ATATCCTTAAGTAGGGTGAA+AGG 0.612227 8_1:-75921631 None:intergenic
CCTTGCATCCAAGAGAGCAA+TGG 0.619111 8_1:-75921067 None:intergenic
CGATGAGATGGAAAGCAATG+AGG 0.624526 8_1:-75920657 None:intergenic
CATATTCAGGATCATCATCA+GGG 0.632732 8_1:+75921759 Msa1214960:CDS
TTGTGGATTGTGATGATCCA+AGG 0.640631 8_1:+75921732 Msa1214960:CDS
AGGGTCAGAGAATATGAGCA+TGG 0.657131 8_1:+75921778 Msa1214960:CDS
TCTAATTCCACAAGAGATGG+GGG 0.658047 8_1:+75921682 Msa1214960:CDS
GACGAACTTGAAGAAGGCGG+TGG 0.658588 8_1:-75920683 None:intergenic
ATGTATATGTACCTGGACAT+TGG 0.663071 8_1:-75920763 None:intergenic
GGGATGAATTAGAAATGACA+AGG 0.706223 8_1:+75921702 Msa1214960:CDS
AACGACGAACTTGAAGAAGG+CGG 0.734968 8_1:-75920686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTATACATAGTATTA+TGG + chr8_1:75921097-75921116 Msa1214960:intron 10.0%
!! CATAAAAAATACTAAAAAAA+AGG - chr8_1:75921164-75921183 None:intergenic 10.0%
!!! CTTTTTTTTAGTATTTTTTA+TGG + chr8_1:75921162-75921181 Msa1214960:intron 10.0%
!! ATTAATTATACATAGTATTA+TGG + chr8_1:75921097-75921116 Msa1214960:intron 10.0%
!! CATAAAAAATACTAAAAAAA+AGG - chr8_1:75921164-75921183 None:intergenic 10.0%
!!! CTTTTTTTTAGTATTTTTTA+TGG + chr8_1:75921162-75921181 Msa1214960:intron 10.0%
!! TCAAAATTCTTATATATTGA+TGG + chr8_1:75920459-75920478 Msa1214960:intron 15.0%
!! TTGGTTAAAATGATTTAATT+TGG + chr8_1:75920490-75920509 Msa1214960:intron 15.0%
!!! AATTTGGTAATTGTTAATAT+AGG + chr8_1:75920506-75920525 Msa1214960:intron 15.0%
!!! ATTTGGTAATTGTTAATATA+GGG + chr8_1:75920507-75920526 Msa1214960:intron 15.0%
!! TGAATTACATAAGATTTAAT+TGG - chr8_1:75920871-75920890 None:intergenic 15.0%
!!! TTTTAATTTCTGATTGAAAA+AGG + chr8_1:75920903-75920922 Msa1214960:intron 15.0%
!! ATGGTTTATATATAGAATTA+TGG + chr8_1:75921116-75921135 Msa1214960:intron 15.0%
!!! TACATATTTTTTTTATGAGA+AGG - chr8_1:75921386-75921405 None:intergenic 15.0%
!!! AACTTTATTGCTATTATTAT+TGG - chr8_1:75921867-75921886 None:intergenic 15.0%
!! TCAAAATTCTTATATATTGA+TGG + chr8_1:75920459-75920478 Msa1214960:intron 15.0%
!! TTGGTTAAAATGATTTAATT+TGG + chr8_1:75920490-75920509 Msa1214960:intron 15.0%
!!! AATTTGGTAATTGTTAATAT+AGG + chr8_1:75920506-75920525 Msa1214960:intron 15.0%
!!! ATTTGGTAATTGTTAATATA+GGG + chr8_1:75920507-75920526 Msa1214960:intron 15.0%
!! TGAATTACATAAGATTTAAT+TGG - chr8_1:75920871-75920890 None:intergenic 15.0%
!!! TTTTAATTTCTGATTGAAAA+AGG + chr8_1:75920903-75920922 Msa1214960:intron 15.0%
!! ATGGTTTATATATAGAATTA+TGG + chr8_1:75921116-75921135 Msa1214960:intron 15.0%
!!! TACATATTTTTTTTATGAGA+AGG - chr8_1:75921386-75921405 None:intergenic 15.0%
!!! AACTTTATTGCTATTATTAT+TGG - chr8_1:75921867-75921886 None:intergenic 15.0%
!! AAAAGACTTAAGAAAACAAA+GGG - chr8_1:75920435-75920454 None:intergenic 20.0%
!! AAAAAGACTTAAGAAAACAA+AGG - chr8_1:75920436-75920455 None:intergenic 20.0%
!! AAATCTTATGTAATTCAACA+TGG + chr8_1:75920874-75920893 Msa1214960:intron 20.0%
!! AACTCATTGAATTAAATGAT+TGG + chr8_1:75921212-75921231 Msa1214960:intron 20.0%
!! ATGAGCATAAATGAATTTAA+TGG - chr8_1:75921454-75921473 None:intergenic 20.0%
!!! ATATGCTTAATTTGATCATA+TGG + chr8_1:75921564-75921583 Msa1214960:intron 20.0%
!! AAAAGACTTAAGAAAACAAA+GGG - chr8_1:75920435-75920454 None:intergenic 20.0%
!! AAAAAGACTTAAGAAAACAA+AGG - chr8_1:75920436-75920455 None:intergenic 20.0%
!! AAATCTTATGTAATTCAACA+TGG + chr8_1:75920874-75920893 Msa1214960:intron 20.0%
!! AACTCATTGAATTAAATGAT+TGG + chr8_1:75921212-75921231 Msa1214960:intron 20.0%
!! ATGAGCATAAATGAATTTAA+TGG - chr8_1:75921454-75921473 None:intergenic 20.0%
!!! ATATGCTTAATTTGATCATA+TGG + chr8_1:75921564-75921583 Msa1214960:intron 20.0%
!!! TATATTGATGGCTACAATTT+TGG + chr8_1:75920471-75920490 Msa1214960:intron 25.0%
! TATACAGAAAAGTTCTTTGT+TGG + chr8_1:75920561-75920580 Msa1214960:CDS 25.0%
! TTATCATGATGTTCTTAGAT+TGG + chr8_1:75920713-75920732 Msa1214960:CDS 25.0%
!! TTTGAATTATGTTGTTTACC+AGG + chr8_1:75920926-75920945 Msa1214960:intron 25.0%
! AATTGAGCACATATATTGAT+TGG + chr8_1:75921279-75921298 Msa1214960:intron 25.0%
!!! ACAATTTTTTGCACAAGATA+TGG + chr8_1:75921504-75921523 Msa1214960:intron 25.0%
!!! CAATTTTTTGCACAAGATAT+GGG + chr8_1:75921505-75921524 Msa1214960:intron 25.0%
! TAAAGTTTCTGATGAAGATA+TGG + chr8_1:75921880-75921899 Msa1214960:CDS 25.0%
! AGTATGATTAGTAGAAGAAA+AGG + chr8_1:75921908-75921927 Msa1214960:CDS 25.0%
!!! TATATTGATGGCTACAATTT+TGG + chr8_1:75920471-75920490 Msa1214960:intron 25.0%
! TATACAGAAAAGTTCTTTGT+TGG + chr8_1:75920561-75920580 Msa1214960:CDS 25.0%
! TTATCATGATGTTCTTAGAT+TGG + chr8_1:75920713-75920732 Msa1214960:CDS 25.0%
!! TTTGAATTATGTTGTTTACC+AGG + chr8_1:75920926-75920945 Msa1214960:intron 25.0%
! AATTGAGCACATATATTGAT+TGG + chr8_1:75921279-75921298 Msa1214960:intron 25.0%
!!! ACAATTTTTTGCACAAGATA+TGG + chr8_1:75921504-75921523 Msa1214960:intron 25.0%
!!! CAATTTTTTGCACAAGATAT+GGG + chr8_1:75921505-75921524 Msa1214960:intron 25.0%
! TAAAGTTTCTGATGAAGATA+TGG + chr8_1:75921880-75921899 Msa1214960:CDS 25.0%
! AGTATGATTAGTAGAAGAAA+AGG + chr8_1:75921908-75921927 Msa1214960:CDS 25.0%
!!! CATTCTTTTTTGCATTCTCA+TGG - chr8_1:75920596-75920615 None:intergenic 30.0%
ATTGAACATGTATATGTACC+TGG - chr8_1:75920773-75920792 None:intergenic 30.0%
! TTTGGCACTATTGATAGTAT+AGG - chr8_1:75920952-75920971 None:intergenic 30.0%
TATGTGACCGTTATAAATCA+AGG + chr8_1:75921343-75921362 Msa1214960:intron 30.0%
ATGTGACCGTTATAAATCAA+GGG + chr8_1:75921344-75921363 Msa1214960:intron 30.0%
CATATGGAGTATATACTTGT+AGG + chr8_1:75921580-75921599 Msa1214960:intron 30.0%
ATAGTCAGGACTTAATTGTA+GGG - chr8_1:75921663-75921682 None:intergenic 30.0%
TATCTAATTCCACAAGAGAT+GGG + chr8_1:75921680-75921699 Msa1214960:CDS 30.0%
AAGTATGTGTGCAAAATTCA+TGG + chr8_1:75921841-75921860 Msa1214960:CDS 30.0%
!!! CATTCTTTTTTGCATTCTCA+TGG - chr8_1:75920596-75920615 None:intergenic 30.0%
ATTGAACATGTATATGTACC+TGG - chr8_1:75920773-75920792 None:intergenic 30.0%
! TTTGGCACTATTGATAGTAT+AGG - chr8_1:75920952-75920971 None:intergenic 30.0%
TATGTGACCGTTATAAATCA+AGG + chr8_1:75921343-75921362 Msa1214960:intron 30.0%
ATGTGACCGTTATAAATCAA+GGG + chr8_1:75921344-75921363 Msa1214960:intron 30.0%
CATATGGAGTATATACTTGT+AGG + chr8_1:75921580-75921599 Msa1214960:intron 30.0%
ATAGTCAGGACTTAATTGTA+GGG - chr8_1:75921663-75921682 None:intergenic 30.0%
TATCTAATTCCACAAGAGAT+GGG + chr8_1:75921680-75921699 Msa1214960:CDS 30.0%
AAGTATGTGTGCAAAATTCA+TGG + chr8_1:75921841-75921860 Msa1214960:CDS 30.0%
ATGTATATGTACCTGGACAT+TGG - chr8_1:75920766-75920785 None:intergenic 35.0%
TACTATCAATAGTGCCAAAG+TGG + chr8_1:75920953-75920972 Msa1214960:CDS 35.0%
AGTTTCCTGATCCTTTGAAT+TGG - chr8_1:75921007-75921026 None:intergenic 35.0%
AATGGATAAAAGGTTCTTGG+AGG - chr8_1:75921052-75921071 None:intergenic 35.0%
AGCAATGGATAAAAGGTTCT+TGG - chr8_1:75921055-75921074 None:intergenic 35.0%
CGGTATCCCTTGATTTATAA+CGG - chr8_1:75921353-75921372 None:intergenic 35.0%
TATGAGAAGGAAACTGAACT+CGG - chr8_1:75921373-75921392 None:intergenic 35.0%
ATGGAGTATATACTTGTAGG+TGG + chr8_1:75921583-75921602 Msa1214960:intron 35.0%
ATATCCTTAAGTAGGGTGAA+AGG - chr8_1:75921634-75921653 None:intergenic 35.0%
GTCTTGCATATCCTTAAGTA+GGG - chr8_1:75921641-75921660 None:intergenic 35.0%
GATAGTCAGGACTTAATTGT+AGG - chr8_1:75921664-75921683 None:intergenic 35.0%
TCTTGTGGAATTAGATAGTC+AGG - chr8_1:75921677-75921696 None:intergenic 35.0%
CTATCTAATTCCACAAGAGA+TGG + chr8_1:75921679-75921698 Msa1214960:CDS 35.0%
ATCTAATTCCACAAGAGATG+GGG + chr8_1:75921681-75921700 Msa1214960:CDS 35.0%
GGGATGAATTAGAAATGACA+AGG + chr8_1:75921702-75921721 Msa1214960:CDS 35.0%
AATGACAAGGTCAACAATTG+TGG + chr8_1:75921715-75921734 Msa1214960:CDS 35.0%
TCATATTCAGGATCATCATC+AGG + chr8_1:75921758-75921777 Msa1214960:CDS 35.0%
CATATTCAGGATCATCATCA+GGG + chr8_1:75921759-75921778 Msa1214960:CDS 35.0%
ATTGTTAGGAAGAGAAGAAG+TGG + chr8_1:75921812-75921831 Msa1214960:CDS 35.0%
AACAAAGAGGAGATCTATGA+GGG - chr8_1:75921937-75921956 None:intergenic 35.0%
TAACAAAGAGGAGATCTATG+AGG - chr8_1:75921938-75921957 None:intergenic 35.0%
ATGTATATGTACCTGGACAT+TGG - chr8_1:75920766-75920785 None:intergenic 35.0%
TACTATCAATAGTGCCAAAG+TGG + chr8_1:75920953-75920972 Msa1214960:CDS 35.0%
AGTTTCCTGATCCTTTGAAT+TGG - chr8_1:75921007-75921026 None:intergenic 35.0%
AATGGATAAAAGGTTCTTGG+AGG - chr8_1:75921052-75921071 None:intergenic 35.0%
AGCAATGGATAAAAGGTTCT+TGG - chr8_1:75921055-75921074 None:intergenic 35.0%
CGGTATCCCTTGATTTATAA+CGG - chr8_1:75921353-75921372 None:intergenic 35.0%
TATGAGAAGGAAACTGAACT+CGG - chr8_1:75921373-75921392 None:intergenic 35.0%
ATGGAGTATATACTTGTAGG+TGG + chr8_1:75921583-75921602 Msa1214960:intron 35.0%
ATATCCTTAAGTAGGGTGAA+AGG - chr8_1:75921634-75921653 None:intergenic 35.0%
GTCTTGCATATCCTTAAGTA+GGG - chr8_1:75921641-75921660 None:intergenic 35.0%
GATAGTCAGGACTTAATTGT+AGG - chr8_1:75921664-75921683 None:intergenic 35.0%
TCTTGTGGAATTAGATAGTC+AGG - chr8_1:75921677-75921696 None:intergenic 35.0%
CTATCTAATTCCACAAGAGA+TGG + chr8_1:75921679-75921698 Msa1214960:CDS 35.0%
ATCTAATTCCACAAGAGATG+GGG + chr8_1:75921681-75921700 Msa1214960:CDS 35.0%
GGGATGAATTAGAAATGACA+AGG + chr8_1:75921702-75921721 Msa1214960:CDS 35.0%
AATGACAAGGTCAACAATTG+TGG + chr8_1:75921715-75921734 Msa1214960:CDS 35.0%
TCATATTCAGGATCATCATC+AGG + chr8_1:75921758-75921777 Msa1214960:CDS 35.0%
CATATTCAGGATCATCATCA+GGG + chr8_1:75921759-75921778 Msa1214960:CDS 35.0%
ATTGTTAGGAAGAGAAGAAG+TGG + chr8_1:75921812-75921831 Msa1214960:CDS 35.0%
AACAAAGAGGAGATCTATGA+GGG - chr8_1:75921937-75921956 None:intergenic 35.0%
TAACAAAGAGGAGATCTATG+AGG - chr8_1:75921938-75921957 None:intergenic 35.0%
CATAACGACGAACTTGAAGA+AGG - chr8_1:75920692-75920711 None:intergenic 40.0%
! CACTATTGATAGTATAGGCC+TGG - chr8_1:75920947-75920966 None:intergenic 40.0%
CTTCTTGATGAACACCACTT+TGG - chr8_1:75920970-75920989 None:intergenic 40.0%
TTCCTGATCCTTTGAATTGG+CGG - chr8_1:75921004-75921023 None:intergenic 40.0%
CCAAGAGAGCAATGGATAAA+AGG - chr8_1:75921062-75921081 None:intergenic 40.0%
! CCTTTTATCCATTGCTCTCT+TGG + chr8_1:75921059-75921078 Msa1214960:CDS 40.0%
AAGACCTTTCACCCTACTTA+AGG + chr8_1:75921627-75921646 Msa1214960:CDS 40.0%
GGTCTTGCATATCCTTAAGT+AGG - chr8_1:75921642-75921661 None:intergenic 40.0%
TCTAATTCCACAAGAGATGG+GGG + chr8_1:75921682-75921701 Msa1214960:CDS 40.0%
! TTGTGGATTGTGATGATCCA+AGG + chr8_1:75921732-75921751 Msa1214960:CDS 40.0%
GATCCAAGGAGTTCATATTC+AGG + chr8_1:75921746-75921765 Msa1214960:CDS 40.0%
GATCCTGAATATGAACTCCT+TGG - chr8_1:75921752-75921771 None:intergenic 40.0%
TGGCATGCACAGAAATTGTT+AGG + chr8_1:75921798-75921817 Msa1214960:CDS 40.0%
TTAGGAAGAGAAGAAGTGGA+TGG + chr8_1:75921816-75921835 Msa1214960:CDS 40.0%
CATAACGACGAACTTGAAGA+AGG - chr8_1:75920692-75920711 None:intergenic 40.0%
! CACTATTGATAGTATAGGCC+TGG - chr8_1:75920947-75920966 None:intergenic 40.0%
CTTCTTGATGAACACCACTT+TGG - chr8_1:75920970-75920989 None:intergenic 40.0%
TTCCTGATCCTTTGAATTGG+CGG - chr8_1:75921004-75921023 None:intergenic 40.0%
CCAAGAGAGCAATGGATAAA+AGG - chr8_1:75921062-75921081 None:intergenic 40.0%
! CCTTTTATCCATTGCTCTCT+TGG + chr8_1:75921059-75921078 Msa1214960:CDS 40.0%
AAGACCTTTCACCCTACTTA+AGG + chr8_1:75921627-75921646 Msa1214960:CDS 40.0%
GGTCTTGCATATCCTTAAGT+AGG - chr8_1:75921642-75921661 None:intergenic 40.0%
TCTAATTCCACAAGAGATGG+GGG + chr8_1:75921682-75921701 Msa1214960:CDS 40.0%
! TTGTGGATTGTGATGATCCA+AGG + chr8_1:75921732-75921751 Msa1214960:CDS 40.0%
GATCCAAGGAGTTCATATTC+AGG + chr8_1:75921746-75921765 Msa1214960:CDS 40.0%
GATCCTGAATATGAACTCCT+TGG - chr8_1:75921752-75921771 None:intergenic 40.0%
TGGCATGCACAGAAATTGTT+AGG + chr8_1:75921798-75921817 Msa1214960:CDS 40.0%
TTAGGAAGAGAAGAAGTGGA+TGG + chr8_1:75921816-75921835 Msa1214960:CDS 40.0%
AAACCAAAAGCCTGCATGGT+TGG + chr8_1:75920530-75920549 Msa1214960:CDS 45.0%
TAAAGAGCTTCCAACCATGC+AGG - chr8_1:75920543-75920562 None:intergenic 45.0%
CGATGAGATGGAAAGCAATG+AGG - chr8_1:75920660-75920679 None:intergenic 45.0%
AACGACGAACTTGAAGAAGG+CGG - chr8_1:75920689-75920708 None:intergenic 45.0%
TATAGACTGCACCAATGTCC+AGG + chr8_1:75920752-75920771 Msa1214960:CDS 45.0%
! CCTTTGAATTGGCGGTTTTG+AGG - chr8_1:75920996-75921015 None:intergenic 45.0%
CCTCAAAACCGCCAATTCAA+AGG + chr8_1:75920993-75921012 Msa1214960:CDS 45.0%
AACCGCCAATTCAAAGGATC+AGG + chr8_1:75920999-75921018 Msa1214960:CDS 45.0%
AATTCATCCCCCATCTCTTG+TGG - chr8_1:75921692-75921711 None:intergenic 45.0%
AGGGTCAGAGAATATGAGCA+TGG + chr8_1:75921778-75921797 Msa1214960:CDS 45.0%
AAACCAAAAGCCTGCATGGT+TGG + chr8_1:75920530-75920549 Msa1214960:CDS 45.0%
TAAAGAGCTTCCAACCATGC+AGG - chr8_1:75920543-75920562 None:intergenic 45.0%
CGATGAGATGGAAAGCAATG+AGG - chr8_1:75920660-75920679 None:intergenic 45.0%
AACGACGAACTTGAAGAAGG+CGG - chr8_1:75920689-75920708 None:intergenic 45.0%
TATAGACTGCACCAATGTCC+AGG + chr8_1:75920752-75920771 Msa1214960:CDS 45.0%
! CCTTTGAATTGGCGGTTTTG+AGG - chr8_1:75920996-75921015 None:intergenic 45.0%
CCTCAAAACCGCCAATTCAA+AGG + chr8_1:75920993-75921012 Msa1214960:CDS 45.0%
AACCGCCAATTCAAAGGATC+AGG + chr8_1:75920999-75921018 Msa1214960:CDS 45.0%
AATTCATCCCCCATCTCTTG+TGG - chr8_1:75921692-75921711 None:intergenic 45.0%
AGGGTCAGAGAATATGAGCA+TGG + chr8_1:75921778-75921797 Msa1214960:CDS 45.0%
!! TGAATTTAATTATATAAAAA+AGG + chr8_1:75921408-75921427 Msa1214960:intron 5.0%
!! TGAATTTAATTATATAAAAA+AGG + chr8_1:75921408-75921427 Msa1214960:intron 5.0%
AGGGAAACCAAAAGCCTGCA+TGG + chr8_1:75920526-75920545 Msa1214960:intron 50.0%
! CTTCCAACCATGCAGGCTTT+TGG - chr8_1:75920536-75920555 None:intergenic 50.0%
CCTTGCATCCAAGAGAGCAA+TGG - chr8_1:75921070-75921089 None:intergenic 50.0%
CCATTGCTCTCTTGGATGCA+AGG + chr8_1:75921067-75921086 Msa1214960:CDS 50.0%
AGGGAAACCAAAAGCCTGCA+TGG + chr8_1:75920526-75920545 Msa1214960:intron 50.0%
! CTTCCAACCATGCAGGCTTT+TGG - chr8_1:75920536-75920555 None:intergenic 50.0%
CCTTGCATCCAAGAGAGCAA+TGG - chr8_1:75921070-75921089 None:intergenic 50.0%
CCATTGCTCTCTTGGATGCA+AGG + chr8_1:75921067-75921086 Msa1214960:CDS 50.0%
GACGAACTTGAAGAAGGCGG+TGG - chr8_1:75920686-75920705 None:intergenic 55.0%
GACGAACTTGAAGAAGGCGG+TGG - chr8_1:75920686-75920705 None:intergenic 55.0%
! AGGCGGTGGTAGCGATGAGA+TGG - chr8_1:75920672-75920691 None:intergenic 60.0%
! AGGCGGTGGTAGCGATGAGA+TGG - chr8_1:75920672-75920691 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 75920417 75921958 75920417 ID=Msa1214960;Name=Msa1214960
chr8_1 mRNA 75920417 75921958 75920417 ID=Msa1214960-mRNA-1;Parent=Msa1214960;Name=Msa1214960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|0.75|1|1|4|0|248
chr8_1 exon 75920417 75920419 75920417 ID=Msa1214960-mRNA-1:exon:26016;Parent=Msa1214960-mRNA-1
chr8_1 exon 75920528 75920773 75920528 ID=Msa1214960-mRNA-1:exon:26017;Parent=Msa1214960-mRNA-1
chr8_1 exon 75920948 75921088 75920948 ID=Msa1214960-mRNA-1:exon:26018;Parent=Msa1214960-mRNA-1
chr8_1 exon 75921602 75921958 75921602 ID=Msa1214960-mRNA-1:exon:26019;Parent=Msa1214960-mRNA-1
chr8_1 CDS 75920417 75920419 75920417 ID=Msa1214960-mRNA-1:cds;Parent=Msa1214960-mRNA-1
chr8_1 CDS 75920528 75920773 75920528 ID=Msa1214960-mRNA-1:cds;Parent=Msa1214960-mRNA-1
chr8_1 CDS 75920948 75921088 75920948 ID=Msa1214960-mRNA-1:cds;Parent=Msa1214960-mRNA-1
chr8_1 CDS 75921602 75921958 75921602 ID=Msa1214960-mRNA-1:cds;Parent=Msa1214960-mRNA-1
Gene Sequence

>Msa1214960

ATGGGAAACCAAAAGCCTGCATGGTTGGAAGCTCTTTATACAGAAAAGTTCTTTGTTGGTTGTTCTTACCATGAGAATGCAAAAAAGAATGAGAAGAATGTTTGTTGCTTAGATTGTTGCACAAGTATTTGTCCTCATTGCTTTCCATCTCATCGCTACCACCGCCTTCTTCAAGTTCGTCGTTATGTTTATCATGATGTTCTTAGATTGGAAGAACTTGAGAAACTTATAGACTGCACCAATGTCCAGGCCTATACTATCAATAGTGCCAAAGTGGTGTTCATCAAGAAGAGACCTCAAAACCGCCAATTCAAAGGATCAGGAAACTACTGCACTTCATGTGATAGAATCCTCCAAGAACCTTTTATCCATTGCTCTCTTGGATGCAAGGTGGATTTTGTGCTGAAACACTACAAAGACCTTTCACCCTACTTAAGGATATGCAAGACCCTACAATTAAGTCCTGACTATCTAATTCCACAAGAGATGGGGGATGAATTAGAAATGACAAGGTCAACAATTGTGGATTGTGATGATCCAAGGAGTTCATATTCAGGATCATCATCAGGGTCAGAGAATATGAGCATGGCATGCACAGAAATTGTTAGGAAGAGAAGAAGTGGATGGACAAGTATGTGTGCAAAATTCATGGCCAATAATAATAGCAATAAAGTTTCTGATGAAGATATGGCTACTAGTATGATTAGTAGAAGAAAAGGAGTCCCTCATAGATCTCCTCTTTGTTAA

Protein sequence

>Msa1214960

MGNQKPAWLEALYTEKFFVGCSYHENAKKNEKNVCCLDCCTSICPHCFPSHRYHRLLQVRRYVYHDVLRLEELEKLIDCTNVQAYTINSAKVVFIKKRPQNRQFKGSGNYCTSCDRILQEPFIHCSLGCKVDFVLKHYKDLSPYLRICKTLQLSPDYLIPQEMGDELEMTRSTIVDCDDPRSSYSGSSSGSENMSMACTEIVRKRRSGWTSMCAKFMANNNSNKVSDEDMATSMISRRKGVPHRSPLC*