AlfalfaGEDB | Msa0711240

M. sativa cultivar zhongmu-4 / Msa0711240

KEGG: -
GO: -
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0711240	AES93613.1	95.270	148	6	1	1	147	497	644	2.39e-91	288

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0711240	sp\|Q9S972\|SD16_ARATH	49.020	153	69	2	1	144	692	844	6.11e-37	137

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0711240	G7K105	95.270	148	6	1	1	147	497	644	1.14e-91	288

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0004940	Msa0711240	0.817227	3.678037e-52	-8.615850e-47
Msa0004990	Msa0711240	0.818435	1.963412e-52	-8.615850e-47
Msa0010150	Msa0711240	0.823286	1.502977e-53	-8.615850e-47
Msa0011060	Msa0711240	-0.803043	4.208342e-49	-8.615850e-47
Msa0011100	Msa0711240	-0.805878	1.079024e-49	-8.615850e-47
Msa0011510	Msa0711240	0.821186	4.616650e-53	-8.615850e-47
Msa0014590	Msa0711240	0.809105	2.230779e-50	-8.615850e-47
Msa0017710	Msa0711240	0.819172	1.335182e-52	-8.615850e-47
Msa0021240	Msa0711240	-0.801837	7.456063e-49	-8.615850e-47
Msa0021870	Msa0711240	0.806465	8.118566e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0711240	MtrunA17_Chr5g0394021	95.270	148	6	1	1	147	491	638	2.29e-95	288
Msa0711240	MtrunA17_Chr8g0354391	53.333	150	66	2	1	146	104	253	8.97e-48	154
Msa0711240	MtrunA17_Chr3g0081011	54.362	149	65	2	1	146	509	657	2.29e-46	159
Msa0711240	MtrunA17_Chr3g0081001	55.034	149	64	2	1	146	513	661	1.77e-45	157
Msa0711240	MtrunA17_Chr5g0394011	60.800	125	45	1	1	121	521	645	2.11e-45	156
Msa0711240	MtrunA17_Chr3g0081071	53.595	153	62	3	1	146	99	249	2.26e-45	148
Msa0711240	MtrunA17_Chr3g0082941	54.730	148	57	3	1	146	343	482	1.01e-44	152
Msa0711240	MtrunA17_Chr3g0081031	53.020	149	67	2	1	146	522	670	1.88e-44	154
Msa0711240	MtrunA17_Chr8g0354331	50.336	149	71	2	1	146	270	418	7.20e-43	146
Msa0711240	MtrunA17_Chr8g0354431	55.034	149	64	2	1	146	512	660	1.18e-42	149

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0711240	AT1G65800.1	49.020	153	69	2	1	144	692	844	6.21e-38	137
Msa0711240	AT1G65790.1	48.052	154	69	3	1	144	688	840	1.30e-37	135
Msa0711240	AT4G23180.1	45.806	155	72	4	1	146	517	668	6.87e-37	133
Msa0711240	AT4G21380.1	48.344	151	69	2	1	142	695	845	2.56e-36	132
Msa0711240	AT4G03230.5	52.846	123	55	2	1	120	787	909	6.26e-35	128
Msa0711240	AT4G03230.2	52.846	123	55	2	1	120	759	881	6.74e-35	128
Msa0711240	AT4G03230.6	52.846	123	55	2	1	120	759	881	6.74e-35	128
Msa0711240	AT4G03230.7	52.846	123	55	2	1	120	702	824	8.02e-35	128
Msa0711240	AT4G03230.8	52.846	123	55	2	1	120	701	823	8.17e-35	128
Msa0711240	AT4G03230.4	52.846	123	55	2	1	120	859	981	8.36e-35	128

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Find 31 sgRNAs with CRISPR-Local

Find 42 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAACAGAAGACATGGT+TGG	0.645766	5_1:+3109052	None:intergenic
ACAGAGAAAGGAGGCTTTCC+TGG	0.314302	5_1:+3108995	None:intergenic
AGAAAGGAGGCTTTCCTGGT+TGG	0.539111	5_1:+3108999	None:intergenic
AGACCCTCCATTGCATACTC+TGG	0.499087	5_1:+3109397	None:intergenic
AGATACTTACATATGCTAGA+AGG	0.516149	5_1:+3109272	None:intergenic
AGTCTCCCTACAGAGAAAGG+AGG	0.710222	5_1:+3108986	None:intergenic
ATATGCTAGAAGGCTAGGAG+TGG	0.666351	5_1:+3109282	None:intergenic
ATGAATGAATCTGTAATGCT+TGG	0.584331	5_1:-3109022	Msa0711240:CDS
ATGGAAAGGGTTTGGAATTA+AGG	0.203723	5_1:-3109162	Msa0711240:CDS
ATGGAATGATGGAAAGGGTT+TGG	0.395759	5_1:-3109170	Msa0711240:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATACTTACATATGCTAGA+AGG	+	chr5_1:3109038-3109057	None:intergenic	30.0%
CATTAATCATTATTCAGGCA+TGG	-	chr5_1:3109109-3109128	Msa0711240:CDS	30.0%
TTCAAGAAGATGCATTTGAT+AGG	-	chr5_1:3109232-3109251	Msa0711240:intron	30.0%
ATGAATGAATCTGTAATGCT+TGG	-	chr5_1:3109285-3109304	Msa0711240:CDS	30.0%
TGATCAAAATGAGCTAGATT+TGG	-	chr5_1:3109353-3109372	Msa0711240:CDS	30.0%
TCTCCAGGGCATAATAAAAA+TGG	+	chr5_1:3109174-3109193	None:intergenic	35.0%
AAAACAACAGAAGACATGGT+TGG	+	chr5_1:3109258-3109277	None:intergenic	35.0%
CATCAAAACAACAGAAGACA+TGG	+	chr5_1:3109262-3109281	None:intergenic	35.0%
CTTACATATGCTAGAAGGCT+AGG	+	chr5_1:3109033-3109052	None:intergenic	40.0%
TTATTCAGGCATGGCATCTA+TGG	-	chr5_1:3109118-3109137	Msa0711240:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	3108904	3109425	3108904	ID=Msa0711240;Name=Msa0711240
chr5_1	mRNA	3108904	3109425	3108904	ID=Msa0711240-mRNA-1;Parent=Msa0711240;Name=Msa0711240-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|2\|0\|147
chr5_1	exon	3109282	3109425	3109282	ID=Msa0711240-mRNA-1:exon:1166;Parent=Msa0711240-mRNA-1
chr5_1	exon	3108904	3109203	3108904	ID=Msa0711240-mRNA-1:exon:1165;Parent=Msa0711240-mRNA-1
chr5_1	CDS	3109282	3109425	3109282	ID=Msa0711240-mRNA-1:cds;Parent=Msa0711240-mRNA-1
chr5_1	CDS	3108904	3109203	3108904	ID=Msa0711240-mRNA-1:cds;Parent=Msa0711240-mRNA-1

Gene Sequence

>Msa0711240

ATGGCTCCAGAGTATGCAATGGAGGGTCTATATTCCATAAAATCTGATGTTTTCGGCTTTGGAGTACTTTTGCTTGAGATCATTACAGGGAAACGTAACGCGGGTTTCTGTTACTCTAAAACCACTCCTAGCCTTCTAGCATATGCATGGCATCTATGGAATGATGGAAAGGGTTTGGAATTAAGGGATCCATTTTTATTATGCCCTGGAGACCAGTTTTTGAGATACATGAATATTGGACTGCTATGTGTTCAAGAAGATGCATTTGATAGGCCAACCATGTCTTCTGTTGTTTTGATGTTGATGAATGAATCTGTAATGCTTGGCCAACCAGGAAAGCCTCCTTTCTCTGTAGGGAGACTCGGAGTTAATGATCAAAATGAGCTAGATTTGGATGAATATTCAGTCAATTTCTTAACTGTTTCTGATATCTTACCCCTGTAA

Protein sequence

>Msa0711240

MAPEYAMEGLYSIKSDVFGFGVLLLEIITGKRNAGFCYSKTTPSLLAYAWHLWNDGKGLELRDPFLLCPGDQFLRYMNIGLLCVQEDAFDRPTMSSVVLMLMNESVMLGQPGKPPFSVGRLGVNDQNELDLDEYSVNFLTVSDILPL*