Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319330 | XP_024638667.1 | 98.834 | 343 | 4 | 0 | 1 | 343 | 196 | 538 | 0.0 | 705 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319330 | sp|Q8LPF8|OFT29_ARATH | 79.461 | 297 | 61 | 0 | 2 | 298 | 211 | 507 | 3.70e-179 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319330 | G7JIV4 | 98.834 | 343 | 4 | 0 | 1 | 343 | 196 | 538 | 0.0 | 705 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002420 | Msa1319330 | 0.832022 | 1.197805e-55 | -8.615850e-47 |
| Msa0106320 | Msa1319330 | 0.802236 | 6.173170e-49 | -8.615850e-47 |
| Msa0152870 | Msa1319330 | 0.818273 | 2.136324e-52 | -8.615850e-47 |
| Msa0168480 | Msa1319330 | 0.809337 | 1.988713e-50 | -8.615850e-47 |
| Msa1257440 | Msa1319330 | 0.834040 | 3.771326e-56 | -8.615850e-47 |
| Msa1305250 | Msa1319330 | 0.815879 | 7.373935e-52 | -8.615850e-47 |
| Msa1319330 | Msa1369150 | 0.810211 | 1.290141e-50 | -8.615850e-47 |
| Msa0435420 | Msa1319330 | 0.809828 | 1.559893e-50 | -8.615850e-47 |
| Msa1079230 | Msa1319330 | 0.806008 | 1.013407e-49 | -8.615850e-47 |
| Msa1124110 | Msa1319330 | 0.805434 | 1.337686e-49 | -8.615850e-47 |
| Msa1143650 | Msa1319330 | 0.815395 | 9.449948e-52 | -8.615850e-47 |
| Msa1169040 | Msa1319330 | 0.801782 | 7.653862e-49 | -8.615850e-47 |
| Msa1207190 | Msa1319330 | 0.821326 | 4.285412e-53 | -8.615850e-47 |
| Msa0518030 | Msa1319330 | 0.808919 | 2.444471e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319330 | MtrunA17_Chr4g0056061 | 98.834 | 343 | 4 | 0 | 1 | 343 | 196 | 538 | 0.0 | 705 |
| Msa1319330 | MtrunA17_Chr5g0399311 | 86.379 | 301 | 41 | 0 | 1 | 301 | 212 | 512 | 0.0 | 561 |
| Msa1319330 | MtrunA17_Chr3g0143821 | 64.865 | 296 | 103 | 1 | 1 | 295 | 198 | 493 | 3.99e-143 | 416 |
| Msa1319330 | MtrunA17_Chr5g0448581 | 62.179 | 312 | 116 | 2 | 1 | 311 | 205 | 515 | 4.74e-143 | 417 |
| Msa1319330 | MtrunA17_Chr1g0160781 | 47.710 | 262 | 124 | 5 | 1 | 249 | 240 | 501 | 1.46e-76 | 245 |
| Msa1319330 | MtrunA17_Chr4g0043911 | 42.222 | 315 | 167 | 8 | 1 | 301 | 241 | 554 | 4.43e-74 | 239 |
| Msa1319330 | MtrunA17_Chr3g0077321 | 40.968 | 310 | 168 | 7 | 1 | 296 | 238 | 546 | 5.59e-69 | 225 |
| Msa1319330 | MtrunA17_Chr5g0424241 | 45.489 | 266 | 124 | 6 | 1 | 249 | 248 | 509 | 2.55e-67 | 221 |
| Msa1319330 | MtrunA17_Chr5g0417871 | 40.397 | 302 | 167 | 6 | 7 | 296 | 179 | 479 | 4.23e-67 | 219 |
| Msa1319330 | MtrunA17_Chr4g0042711 | 39.286 | 308 | 174 | 6 | 7 | 302 | 191 | 497 | 3.54e-65 | 214 |
| Msa1319330 | MtrunA17_Chr3g0129981 | 47.391 | 230 | 117 | 3 | 24 | 249 | 221 | 450 | 4.37e-65 | 214 |
| Msa1319330 | MtrunA17_Chr6g0455571 | 44.000 | 275 | 147 | 5 | 7 | 275 | 210 | 483 | 4.89e-65 | 214 |
| Msa1319330 | MtrunA17_Chr5g0436321 | 40.789 | 304 | 165 | 8 | 7 | 297 | 252 | 553 | 2.58e-64 | 213 |
| Msa1319330 | MtrunA17_Chr3g0132371 | 45.387 | 271 | 140 | 6 | 10 | 273 | 235 | 504 | 3.52e-64 | 212 |
| Msa1319330 | MtrunA17_Chr5g0426591 | 44.697 | 264 | 138 | 5 | 10 | 269 | 208 | 467 | 4.84e-64 | 211 |
| Msa1319330 | MtrunA17_Chr4g0008451 | 40.594 | 303 | 165 | 8 | 7 | 296 | 323 | 623 | 1.25e-62 | 210 |
| Msa1319330 | MtrunA17_Chr3g0123521 | 39.216 | 306 | 170 | 8 | 3 | 294 | 244 | 547 | 1.49e-62 | 208 |
| Msa1319330 | MtrunA17_Chr4g0070551 | 39.394 | 297 | 167 | 7 | 11 | 295 | 323 | 618 | 4.77e-62 | 208 |
| Msa1319330 | MtrunA17_Chr2g0284071 | 36.890 | 328 | 161 | 10 | 12 | 296 | 318 | 642 | 5.54e-62 | 209 |
| Msa1319330 | MtrunA17_Chr4g0061781 | 41.877 | 277 | 154 | 5 | 7 | 277 | 211 | 486 | 8.72e-62 | 205 |
| Msa1319330 | MtrunA17_Chr2g0307971 | 42.125 | 273 | 151 | 5 | 7 | 273 | 210 | 481 | 8.86e-61 | 203 |
| Msa1319330 | MtrunA17_Chr1g0204121 | 37.458 | 299 | 182 | 4 | 1 | 295 | 178 | 475 | 4.28e-56 | 190 |
| Msa1319330 | MtrunA17_Chr4g0075311 | 36.893 | 309 | 149 | 7 | 5 | 269 | 260 | 566 | 5.56e-56 | 192 |
| Msa1319330 | MtrunA17_Chr3g0087291 | 36.545 | 301 | 180 | 7 | 2 | 294 | 259 | 556 | 1.17e-50 | 177 |
| Msa1319330 | MtrunA17_Chr5g0412251 | 33.851 | 322 | 180 | 10 | 4 | 295 | 184 | 502 | 1.63e-49 | 172 |
| Msa1319330 | MtrunA17_Chr3g0132951 | 33.645 | 321 | 180 | 10 | 4 | 294 | 198 | 515 | 2.61e-49 | 172 |
| Msa1319330 | MtrunA17_Chr1g0204141 | 36.304 | 303 | 183 | 6 | 1 | 295 | 178 | 478 | 3.72e-48 | 169 |
| Msa1319330 | MtrunA17_Chr4g0010511 | 38.603 | 272 | 142 | 9 | 38 | 294 | 355 | 616 | 5.12e-46 | 165 |
| Msa1319330 | MtrunA17_Chr7g0220381 | 34.171 | 199 | 113 | 5 | 1 | 185 | 191 | 385 | 2.77e-28 | 115 |
| Msa1319330 | MtrunA17_Chr4g0003561 | 32.218 | 239 | 134 | 7 | 12 | 238 | 171 | 393 | 5.16e-28 | 113 |
| Msa1319330 | MtrunA17_Chr7g0240241 | 44.643 | 112 | 56 | 1 | 79 | 184 | 8 | 119 | 6.69e-25 | 97.8 |
| Msa1319330 | MtrunA17_Chr3g0127811 | 31.606 | 193 | 122 | 4 | 6 | 188 | 148 | 340 | 8.99e-25 | 104 |
| Msa1319330 | MtrunA17_Chr1g0146501 | 31.771 | 192 | 121 | 4 | 7 | 188 | 189 | 380 | 1.50e-24 | 104 |
| Msa1319330 | MtrunA17_Chr4g0002361 | 26.693 | 251 | 142 | 10 | 1 | 240 | 170 | 389 | 5.45e-12 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319330 | AT4G16650.2 | 79.461 | 297 | 61 | 0 | 2 | 298 | 211 | 507 | 3.76e-180 | 510 |
| Msa1319330 | AT4G16650.1 | 79.461 | 297 | 61 | 0 | 2 | 298 | 211 | 507 | 3.76e-180 | 510 |
| Msa1319330 | AT1G76270.1 | 57.941 | 340 | 140 | 2 | 1 | 339 | 192 | 529 | 3.19e-145 | 422 |
| Msa1319330 | AT4G38390.1 | 64.407 | 295 | 104 | 1 | 1 | 294 | 211 | 505 | 1.24e-142 | 415 |
| Msa1319330 | AT1G20550.1 | 62.838 | 296 | 109 | 1 | 1 | 295 | 195 | 490 | 1.05e-141 | 413 |
| Msa1319330 | AT1G14970.3 | 42.675 | 314 | 157 | 9 | 1 | 296 | 100 | 408 | 1.46e-77 | 244 |
| Msa1319330 | AT2G01480.2 | 48.855 | 262 | 121 | 6 | 1 | 249 | 245 | 506 | 1.53e-77 | 247 |
| Msa1319330 | AT1G14970.2 | 42.675 | 314 | 157 | 9 | 1 | 296 | 126 | 434 | 3.27e-77 | 244 |
| Msa1319330 | AT2G01480.1 | 43.791 | 306 | 150 | 8 | 1 | 289 | 245 | 545 | 3.69e-77 | 247 |
| Msa1319330 | AT1G14970.1 | 42.675 | 314 | 157 | 9 | 1 | 296 | 246 | 554 | 5.40e-76 | 244 |
| Msa1319330 | AT1G35510.1 | 40.764 | 314 | 165 | 7 | 1 | 297 | 250 | 559 | 7.02e-69 | 226 |
| Msa1319330 | AT5G64600.1 | 46.311 | 244 | 125 | 4 | 12 | 250 | 212 | 454 | 1.98e-68 | 223 |
| Msa1319330 | AT1G14020.1 | 40.532 | 301 | 166 | 6 | 7 | 295 | 185 | 484 | 2.59e-68 | 222 |
| Msa1319330 | AT2G03280.1 | 41.000 | 300 | 163 | 7 | 7 | 293 | 182 | 480 | 8.20e-66 | 215 |
| Msa1319330 | AT1G38065.2 | 42.806 | 278 | 145 | 6 | 1 | 265 | 117 | 393 | 1.26e-65 | 214 |
| Msa1319330 | AT1G38065.1 | 42.806 | 278 | 145 | 6 | 1 | 265 | 127 | 403 | 1.45e-65 | 214 |
| Msa1319330 | AT2G03280.2 | 41.000 | 300 | 163 | 7 | 7 | 293 | 209 | 507 | 1.82e-65 | 215 |
| Msa1319330 | AT5G15740.1 | 43.273 | 275 | 149 | 5 | 7 | 275 | 201 | 474 | 2.51e-65 | 215 |
| Msa1319330 | AT1G22460.1 | 41.042 | 307 | 160 | 9 | 10 | 296 | 254 | 559 | 1.24e-64 | 214 |
| Msa1319330 | AT1G38131.1 | 42.806 | 278 | 145 | 6 | 1 | 265 | 246 | 522 | 2.31e-64 | 214 |
| Msa1319330 | AT3G26370.1 | 39.414 | 307 | 170 | 8 | 3 | 295 | 252 | 556 | 1.31e-63 | 211 |
| Msa1319330 | AT3G02250.1 | 42.545 | 275 | 151 | 5 | 7 | 275 | 201 | 474 | 8.22e-63 | 208 |
| Msa1319330 | AT5G35570.1 | 41.414 | 297 | 161 | 7 | 11 | 295 | 346 | 641 | 1.70e-61 | 208 |
| Msa1319330 | AT2G37980.1 | 38.835 | 309 | 174 | 8 | 7 | 302 | 317 | 623 | 4.17e-61 | 206 |
| Msa1319330 | AT1G62330.1 | 37.419 | 310 | 151 | 7 | 3 | 269 | 315 | 624 | 2.66e-60 | 204 |
| Msa1319330 | AT3G54100.1 | 38.835 | 309 | 174 | 8 | 7 | 302 | 313 | 619 | 3.00e-60 | 204 |
| Msa1319330 | AT1G11990.1 | 42.199 | 282 | 150 | 6 | 1 | 269 | 282 | 563 | 3.71e-60 | 203 |
| Msa1319330 | AT1G29200.3 | 37.667 | 300 | 148 | 6 | 5 | 265 | 91 | 390 | 6.91e-59 | 196 |
| Msa1319330 | AT1G29200.4 | 37.667 | 300 | 148 | 6 | 5 | 265 | 165 | 464 | 3.14e-58 | 196 |
| Msa1319330 | AT1G29200.1 | 37.667 | 300 | 148 | 6 | 5 | 265 | 165 | 464 | 3.14e-58 | 196 |
| Msa1319330 | AT1G29200.2 | 37.667 | 300 | 148 | 6 | 5 | 265 | 281 | 580 | 2.76e-57 | 196 |
| Msa1319330 | AT1G04910.1 | 40.672 | 268 | 155 | 3 | 1 | 265 | 178 | 444 | 7.96e-57 | 192 |
| Msa1319330 | AT4G24530.1 | 36.223 | 323 | 173 | 10 | 3 | 295 | 198 | 517 | 2.99e-55 | 189 |
| Msa1319330 | AT2G44500.1 | 37.542 | 301 | 179 | 5 | 2 | 295 | 264 | 562 | 2.71e-54 | 187 |
| Msa1319330 | AT1G11990.2 | 37.304 | 319 | 150 | 7 | 1 | 269 | 267 | 585 | 7.20e-54 | 187 |
| Msa1319330 | AT5G63390.1 | 36.213 | 301 | 181 | 7 | 2 | 294 | 251 | 548 | 1.61e-49 | 174 |
| Msa1319330 | AT5G01100.1 | 33.224 | 304 | 187 | 7 | 7 | 295 | 307 | 609 | 1.70e-48 | 172 |
| Msa1319330 | AT5G65470.1 | 33.639 | 327 | 178 | 11 | 3 | 295 | 182 | 503 | 2.39e-48 | 170 |
| Msa1319330 | AT3G07900.1 | 38.433 | 268 | 152 | 9 | 38 | 296 | 311 | 574 | 1.45e-47 | 169 |
| Msa1319330 | AT3G30300.2 | 36.735 | 196 | 112 | 5 | 1 | 185 | 193 | 387 | 5.43e-31 | 124 |
| Msa1319330 | AT3G30300.1 | 36.735 | 196 | 112 | 5 | 1 | 185 | 193 | 387 | 5.43e-31 | 124 |
| Msa1319330 | AT1G52630.2 | 29.719 | 249 | 145 | 6 | 12 | 248 | 82 | 312 | 2.90e-26 | 107 |
| Msa1319330 | AT1G52630.1 | 31.020 | 245 | 147 | 7 | 12 | 248 | 170 | 400 | 8.38e-26 | 107 |
| Msa1319330 | AT3G03810.2 | 35.938 | 192 | 113 | 5 | 7 | 188 | 188 | 379 | 1.72e-25 | 107 |
| Msa1319330 | AT3G03810.1 | 35.938 | 192 | 113 | 5 | 7 | 188 | 188 | 379 | 1.72e-25 | 107 |
| Msa1319330 | AT3G26370.2 | 39.831 | 118 | 66 | 3 | 3 | 115 | 252 | 369 | 9.67e-20 | 89.7 |
| Msa1319330 | AT2G44500.2 | 35.915 | 142 | 86 | 2 | 2 | 139 | 264 | 404 | 3.69e-17 | 82.4 |
Find 121 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATGTAACAGGCGATATA+TGG | 0.223337 | 8_4:+22291559 | Msa1319330:intron |
| TCACTCAATTCGTCTATAAA+TGG | 0.225919 | 8_4:-22291773 | None:intergenic |
| GCTTAATATGTTCTCTCATT+TGG | 0.246182 | 8_4:-22291896 | None:intergenic |
| CCTGAAAATGCCAGCATATC+TGG | 0.250790 | 8_4:-22290649 | None:intergenic |
| CTTCTTTGCATTTGGTCTAA+TGG | 0.257972 | 8_4:-22291594 | None:intergenic |
| CTCGGGACACGCATGGTATA+TGG | 0.264790 | 8_4:-22289893 | None:intergenic |
| TAATTGGTTCATTAATTATC+TGG | 0.271850 | 8_4:+22289809 | Msa1319330:five_prime_UTR |
| TTCATTTCCTCCGTTTATTT+CGG | 0.275809 | 8_4:-22291852 | None:intergenic |
| TCAATTTAGATCCATGTATA+GGG | 0.299524 | 8_4:+22292010 | Msa1319330:three_prime_UTR |
| ATTGACCGCATGACCTTATC+TGG | 0.317222 | 8_4:-22289861 | None:intergenic |
| GCGCTAAGCTTCTTTGCATT+TGG | 0.317689 | 8_4:-22291602 | None:intergenic |
| CCACGCTTTCGTTCTCCGTC+AGG | 0.330147 | 8_4:-22291167 | None:intergenic |
| CGGCAAAGCAACTCAGTTAC+TGG | 0.333215 | 8_4:+22292339 | Msa1319330:three_prime_UTR |
| ATCTCCTTTGTATAGATGTT+GGG | 0.341513 | 8_4:-22291326 | None:intergenic |
| GCTCTCCCATGAATCCTCTT+TGG | 0.363004 | 8_4:-22291685 | None:intergenic |
| TATGTTCTCTCATTTGGCTT+TGG | 0.365917 | 8_4:-22291890 | None:intergenic |
| TCGGGACACGCATGGTATAT+GGG | 0.383257 | 8_4:-22289892 | None:intergenic |
| AGCTTGGTGAAATCAGAAAA+AGG | 0.385190 | 8_4:+22290707 | Msa1319330:CDS |
| GAAGCTTAGCGCGCTGTTCA+TGG | 0.386331 | 8_4:+22291613 | Msa1319330:CDS |
| CCTTTCTCGAAAATGTATTC+CGG | 0.393462 | 8_4:-22291652 | None:intergenic |
| CTCAATTTAGATCCATGTAT+AGG | 0.397167 | 8_4:+22292009 | Msa1319330:three_prime_UTR |
| TGGACGATTAGAGCTGGTTT+AGG | 0.404354 | 8_4:+22292456 | Msa1319330:three_prime_UTR |
| TTCACTGAACACACCTCAAA+TGG | 0.408067 | 8_4:-22290322 | None:intergenic |
| ACTTGATCAAGATAATATTC+AGG | 0.409288 | 8_4:-22289926 | None:intergenic |
| GGCGTGCCAAAGAGGATTCA+TGG | 0.413721 | 8_4:+22291679 | Msa1319330:CDS |
| TTTGGTCCCTTTCAAGTTGG+TGG | 0.420304 | 8_4:+22291938 | Msa1319330:three_prime_UTR |
| GGAACTGACGCCGAAATAAA+CGG | 0.425295 | 8_4:+22291842 | Msa1319330:CDS |
| GAGAATTGCAAGAGCAACTT+TGG | 0.426387 | 8_4:+22291920 | Msa1319330:three_prime_UTR |
| TAGTTCATCATCAAGGTCAT+TGG | 0.428900 | 8_4:-22290183 | None:intergenic |
| CCCACTTCATGAGGAGTAAG+AGG | 0.434476 | 8_4:-22291197 | None:intergenic |
| GTTCATGGCGAGGCATGAAA+TGG | 0.434734 | 8_4:+22291628 | Msa1319330:CDS |
| AGAGGATTCATGGGAGAGCC+AGG | 0.436961 | 8_4:+22291689 | Msa1319330:CDS |
| CATCTCCTTTGTATAGATGT+TGG | 0.438548 | 8_4:-22291327 | None:intergenic |
| GTTATATAGCAGTCCATTTG+AGG | 0.440662 | 8_4:+22290309 | Msa1319330:CDS |
| CACGCTTTCGTTCTCCGTCA+GGG | 0.449075 | 8_4:-22291166 | None:intergenic |
| ACATACCTGTATGTTGCATC+GGG | 0.449719 | 8_4:+22291254 | Msa1319330:CDS |
| AATAATGCCACCAACTTGAA+AGG | 0.450326 | 8_4:-22291945 | None:intergenic |
| CGTCCAGCTTTCATCTCTCC+TGG | 0.453678 | 8_4:-22291707 | None:intergenic |
| TTCATTGTGAGCTCAGCTAT+AGG | 0.454563 | 8_4:+22292094 | Msa1319330:three_prime_UTR |
| AACATGGCCAGGATTCTTGC+TGG | 0.456728 | 8_4:+22291458 | Msa1319330:CDS |
| CACATACCTGTATGTTGCAT+CGG | 0.462028 | 8_4:+22291253 | Msa1319330:CDS |
| CCTTTGACCAGCAAGAATCC+TGG | 0.463146 | 8_4:-22291465 | None:intergenic |
| GCATTTAGAAATCTGACAAT+AGG | 0.464250 | 8_4:+22291821 | Msa1319330:CDS |
| CAGGTTTGAGCCAGATATGC+TGG | 0.469168 | 8_4:+22290639 | Msa1319330:intron |
| TATTCAGGATCTGATTTCCT+CGG | 0.470623 | 8_4:-22289911 | None:intergenic |
| AGATTTCTAAATGCGAGCTT+AGG | 0.471285 | 8_4:-22291812 | None:intergenic |
| AGATAAGGTCATGCGGTCAA+TGG | 0.476341 | 8_4:+22289863 | Msa1319330:five_prime_UTR |
| GTTGGTGGCATTATTAAACT+TGG | 0.480356 | 8_4:+22291953 | Msa1319330:three_prime_UTR |
| TTCTTCAAGTGCAACGATGA+TGG | 0.486237 | 8_4:+22292304 | Msa1319330:three_prime_UTR |
| TTCTCACAGACACAAGTGCT+TGG | 0.492215 | 8_4:-22291749 | None:intergenic |
| GTAATCAACAGCAGCTAGGC+GGG | 0.492518 | 8_4:-22291390 | None:intergenic |
| ATTCAGGATCTGATTTCCTC+GGG | 0.501133 | 8_4:-22289910 | None:intergenic |
| AAAAGGTTTCAATTCTTCCT+CGG | 0.501153 | 8_4:-22291354 | None:intergenic |
| AATTGAGTGAAGATGGAATC+CGG | 0.501267 | 8_4:+22291786 | Msa1319330:CDS |
| ATAATGCCACCAACTTGAAA+GGG | 0.502180 | 8_4:-22291944 | None:intergenic |
| TGTAATGAGGATGCGAAAGA+TGG | 0.508686 | 8_4:+22290280 | Msa1319330:CDS |
| AACTTTGGTCCCTTTCAAGT+TGG | 0.509880 | 8_4:+22291935 | Msa1319330:three_prime_UTR |
| TTGTTATGGCTTGAACGGAT+TGG | 0.510891 | 8_4:+22292391 | Msa1319330:three_prime_UTR |
| GTATGTAACAGGCGATATAT+GGG | 0.511833 | 8_4:+22291560 | Msa1319330:intron |
| ATAGACGAATTGAGTGAAGA+TGG | 0.512145 | 8_4:+22291779 | Msa1319330:CDS |
| TAAATGCGAGCTTAGGTGGC+CGG | 0.513190 | 8_4:-22291805 | None:intergenic |
| GAGCCAGGAGAGATGAAAGC+TGG | 0.520156 | 8_4:+22291704 | Msa1319330:CDS |
| ACCCGTCGTCTCAAGAGTAT+TGG | 0.523710 | 8_4:-22289953 | None:intergenic |
| ACAACAACGGTAACATGGCC+AGG | 0.529185 | 8_4:+22291447 | Msa1319330:CDS |
| CGGGAAGAGAATGAAAGAAA+AGG | 0.531327 | 8_4:-22291371 | None:intergenic |
| GCTTATATCAATCTCGGCAA+TGG | 0.532044 | 8_4:+22292436 | Msa1319330:three_prime_UTR |
| TGTTAAAAGAGTTCCAGATA+AGG | 0.534714 | 8_4:+22289848 | Msa1319330:five_prime_UTR |
| ACAAAACCAATACGACAACT+TGG | 0.536194 | 8_4:+22290248 | Msa1319330:CDS |
| GGTTTGATGCTGCGAGCGCT+TGG | 0.537934 | 8_4:+22291218 | Msa1319330:CDS |
| CCAATTAACATCGAAAATGT+TGG | 0.538007 | 8_4:-22289793 | None:intergenic |
| TCCTCTTACTCCTCATGAAG+TGG | 0.539526 | 8_4:+22291196 | Msa1319330:CDS |
| CCTCTTACTCCTCATGAAGT+GGG | 0.541378 | 8_4:+22291197 | Msa1319330:CDS |
| TTTCTAAATGCGAGCTTAGG+TGG | 0.543183 | 8_4:-22291809 | None:intergenic |
| GCCAATACTCTTGAGACGAC+GGG | 0.549625 | 8_4:+22289952 | Msa1319330:CDS |
| CCAGGATTCTTGCTGGTCAA+AGG | 0.549818 | 8_4:+22291465 | Msa1319330:CDS |
| ATGTGGGCTTATATCAATCT+CGG | 0.550508 | 8_4:+22292430 | Msa1319330:three_prime_UTR |
| GCACTTGGTTTGAGTCATGT+TGG | 0.551582 | 8_4:-22292246 | None:intergenic |
| CATATCTATAAACATTTGCA+AGG | 0.551643 | 8_4:-22292058 | None:intergenic |
| TCAAATGGACTGCTATATAA+CGG | 0.554034 | 8_4:-22290307 | None:intergenic |
| TACGTACTTTCCCCTATACA+TGG | 0.559264 | 8_4:-22292021 | None:intergenic |
| TGGCGAGGCATGAAATGGAC+CGG | 0.559422 | 8_4:+22291633 | Msa1319330:CDS |
| CGGCAATGGACGATTAGAGC+TGG | 0.559423 | 8_4:+22292450 | Msa1319330:three_prime_UTR |
| GATGATGGTCTCTATTTCAT+CGG | 0.560662 | 8_4:+22292319 | Msa1319330:three_prime_UTR |
| TCTCCTTTGTATAGATGTTG+GGG | 0.562630 | 8_4:-22291325 | None:intergenic |
| GAGCTCCAGCTTGCTGTAGG+TGG | 0.563803 | 8_4:-22292275 | None:intergenic |
| TGTAGGTGGTATAATGCACT+TGG | 0.570011 | 8_4:-22292261 | None:intergenic |
| GCGTGCCAAAGAGGATTCAT+GGG | 0.571444 | 8_4:+22291680 | Msa1319330:CDS |
| AATCTTGTTATATGCTGTGA+TGG | 0.573882 | 8_4:+22291986 | Msa1319330:three_prime_UTR |
| CAATGTAATCAACAGCAGCT+AGG | 0.577338 | 8_4:-22291394 | None:intergenic |
| AAGATCTCTGAGAGGCTGCA+TGG | 0.577808 | 8_4:-22291300 | None:intergenic |
| TTAGCGCGCTGTTCATGGCG+AGG | 0.577856 | 8_4:+22291618 | Msa1319330:CDS |
| TGCTAACAACAACGGTAACA+TGG | 0.579524 | 8_4:+22291442 | Msa1319330:CDS |
| CGGGACACGCATGGTATATG+GGG | 0.580766 | 8_4:-22289891 | None:intergenic |
| GCGTCACATGAGGCTACATG+TGG | 0.581233 | 8_4:+22292413 | Msa1319330:three_prime_UTR |
| GAAGAGCTCCAGCTTGCTGT+AGG | 0.585222 | 8_4:-22292278 | None:intergenic |
| GAACGGATTGGCGTCACATG+AGG | 0.585749 | 8_4:+22292403 | Msa1319330:three_prime_UTR |
| GGAGAGATGAAAGCTGGACG+AGG | 0.589299 | 8_4:+22291710 | Msa1319330:CDS |
| TTATACCACCTACAGCAAGC+TGG | 0.590274 | 8_4:+22292270 | Msa1319330:three_prime_UTR |
| TGCCAATACTCTTGAGACGA+CGG | 0.593501 | 8_4:+22289951 | Msa1319330:CDS |
| AGCATCAAACCCACTTCATG+AGG | 0.596281 | 8_4:-22291206 | None:intergenic |
| AAGCCATAACAAAACGACCT+TGG | 0.599910 | 8_4:-22292380 | None:intergenic |
| TGATTTCCTCGGGACACGCA+TGG | 0.609508 | 8_4:-22289900 | None:intergenic |
| ATACAGGATTTGAGCCCTGA+CGG | 0.612438 | 8_4:+22291152 | Msa1319330:intron |
| ATACCTGTATGTTGCATCGG+GGG | 0.619931 | 8_4:+22291256 | Msa1319330:CDS |
| AAGGTAAAGGCGTGCCAAAG+AGG | 0.620555 | 8_4:+22291671 | Msa1319330:CDS |
| TTTCCCCAACATCTATACAA+AGG | 0.622108 | 8_4:+22291322 | Msa1319330:CDS |
| CAATTTAGATCCATGTATAG+GGG | 0.626244 | 8_4:+22292011 | Msa1319330:three_prime_UTR |
| CCTGACGGAGAACGAAAGCG+TGG | 0.628749 | 8_4:+22291167 | Msa1319330:CDS |
| GTATTTGTTGCTAACAACAA+CGG | 0.634873 | 8_4:+22291434 | Msa1319330:CDS |
| TACAAAGGAGATGCTTGCCG+AGG | 0.652331 | 8_4:+22291337 | Msa1319330:CDS |
| TGTAATCAACAGCAGCTAGG+CGG | 0.658178 | 8_4:-22291391 | None:intergenic |
| ATATCTATAAACATTTGCAA+GGG | 0.665419 | 8_4:-22292057 | None:intergenic |
| CATATACCATGCGTGTCCCG+AGG | 0.668419 | 8_4:+22289894 | Msa1319330:exon |
| CGTCACATGAGGCTACATGT+GGG | 0.672293 | 8_4:+22292414 | Msa1319330:three_prime_UTR |
| TCAAAGCATGATAATTAACA+CGG | 0.686663 | 8_4:-22290220 | None:intergenic |
| CTGACGGAGAACGAAAGCGT+GGG | 0.689450 | 8_4:+22291168 | Msa1319330:CDS |
| GAGTTCCAGATAAGGTCATG+CGG | 0.704682 | 8_4:+22289856 | Msa1319330:five_prime_UTR |
| CATACCTGTATGTTGCATCG+GGG | 0.711632 | 8_4:+22291255 | Msa1319330:CDS |
| TTGGGGAAAAGATCTCTGAG+AGG | 0.727453 | 8_4:-22291308 | None:intergenic |
| ACTGACGCCGAAATAAACGG+AGG | 0.750065 | 8_4:+22291845 | Msa1319330:CDS |
| ATGTGTGTACGAGATGACCA+AGG | 0.776685 | 8_4:+22292363 | Msa1319330:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGTGTAAAAATATAATTTT+AGG | + | chr8_4:22290893-22290912 | Msa1319330:intron | 10.0% |
| !!! | TTATATTAATTTTTCAAACA+AGG | - | chr8_4:22291505-22291524 | None:intergenic | 10.0% |
| !!! | ATATAAATTTTGTTTGATAA+AGG | + | chr8_4:22291519-22291538 | Msa1319330:intron | 10.0% |
| !!! | AAAAATATAATTTTAGGTGT+TGG | + | chr8_4:22290899-22290918 | Msa1319330:intron | 15.0% |
| !!! | TAATTGGTTCATTAATTATC+TGG | + | chr8_4:22289809-22289828 | Msa1319330:five_prime_UTR | 20.0% |
| !! | AAATTTAAATTCCATACACA+AGG | - | chr8_4:22290348-22290367 | None:intergenic | 20.0% |
| !!! | TTAAATTTAACTTCCATCAA+AGG | + | chr8_4:22290360-22290379 | Msa1319330:intron | 20.0% |
| !! | CATTATAATAGCAATATGTA+AGG | + | chr8_4:22290570-22290589 | Msa1319330:intron | 20.0% |
| !!! | AGTAGTTTTTCAAAATAATC+TGG | + | chr8_4:22291005-22291024 | Msa1319330:intron | 20.0% |
| !!! | ATATAACAAGATTTTCATCA+TGG | - | chr8_4:22291979-22291998 | None:intergenic | 20.0% |
| !! | ATATCTATAAACATTTGCAA+GGG | - | chr8_4:22292060-22292079 | None:intergenic | 20.0% |
| ! | ACTTGATCAAGATAATATTC+AGG | - | chr8_4:22289929-22289948 | None:intergenic | 25.0% |
| ! | TCAAAGCATGATAATTAACA+CGG | - | chr8_4:22290223-22290242 | None:intergenic | 25.0% |
| ! | TTGGTCAAAAAATTGTAATG+AGG | + | chr8_4:22290267-22290286 | Msa1319330:CDS | 25.0% |
| ! | TCATGATCTATGATGATTTA+TGG | + | chr8_4:22290614-22290633 | Msa1319330:intron | 25.0% |
| !!! | GGTAAAGAAATAACTAGTTT+TGG | - | chr8_4:22291097-22291116 | None:intergenic | 25.0% |
| ! | TCAATTTAGATCCATGTATA+GGG | + | chr8_4:22292010-22292029 | Msa1319330:three_prime_UTR | 25.0% |
| ! | CATATCTATAAACATTTGCA+AGG | - | chr8_4:22292061-22292080 | None:intergenic | 25.0% |
| ! | TATTTAGTATTTAAGTCGTC+AGG | - | chr8_4:22292183-22292202 | None:intergenic | 25.0% |
| ! | GACGACTTAAATACTAAATA+TGG | + | chr8_4:22292183-22292202 | Msa1319330:intron | 25.0% |
| CCAATTAACATCGAAAATGT+TGG | - | chr8_4:22289796-22289815 | None:intergenic | 30.0% | |
| ! | CCAACATTTTCGATGTTAAT+TGG | + | chr8_4:22289793-22289812 | Msa1319330:five_prime_UTR | 30.0% |
| TGTTAAAAGAGTTCCAGATA+AGG | + | chr8_4:22289848-22289867 | Msa1319330:five_prime_UTR | 30.0% | |
| !! | TCAGTTTTGATAACTCCTTT+TGG | + | chr8_4:22290086-22290105 | Msa1319330:intron | 30.0% |
| !! | CAGATTTTTCGGTATTTTAC+AGG | + | chr8_4:22290127-22290146 | Msa1319330:intron | 30.0% |
| ! | GTTTTTGTAGTTCATCATCA+AGG | - | chr8_4:22290193-22290212 | None:intergenic | 30.0% |
| !! | TCAAATGGACTGCTATATAA+CGG | - | chr8_4:22290310-22290329 | None:intergenic | 30.0% |
| TATAGGGATGAGATCATATA+TGG | - | chr8_4:22290438-22290457 | None:intergenic | 30.0% | |
| GATAAAGGAGTTGTGAAAAT+GGG | - | chr8_4:22290490-22290509 | None:intergenic | 30.0% | |
| TGATAAAGGAGTTGTGAAAA+TGG | - | chr8_4:22290491-22290510 | None:intergenic | 30.0% | |
| TCAATTTCAGACAGTGATAA+AGG | - | chr8_4:22290505-22290524 | None:intergenic | 30.0% | |
| GATCATGAGAATTCAAACAT+TGG | - | chr8_4:22290602-22290621 | None:intergenic | 30.0% | |
| !!! | GCATTTTCAGGTTGTTATTT+TGG | + | chr8_4:22290661-22290680 | Msa1319330:CDS | 30.0% |
| !!! | TTTTCAGGTTGTTATTTTGG+TGG | + | chr8_4:22290664-22290683 | Msa1319330:CDS | 30.0% |
| !!! | TTTCAGGTTGTTATTTTGGT+GGG | + | chr8_4:22290665-22290684 | Msa1319330:CDS | 30.0% |
| ! | GTTTTGTCAGTAGAAATCAT+AGG | - | chr8_4:22290761-22290780 | None:intergenic | 30.0% |
| TATTGTCAGTGGAAATGATA+TGG | - | chr8_4:22290783-22290802 | None:intergenic | 30.0% | |
| TGTATTATTGCAAGAGGTAA+TGG | - | chr8_4:22291137-22291156 | None:intergenic | 30.0% | |
| ATTACCTCTTGCAATAATAC+AGG | + | chr8_4:22291136-22291155 | Msa1319330:intron | 30.0% | |
| AAATCCTGTATTATTGCAAG+AGG | - | chr8_4:22291143-22291162 | None:intergenic | 30.0% | |
| ATCTCCTTTGTATAGATGTT+GGG | - | chr8_4:22291329-22291348 | None:intergenic | 30.0% | |
| AAAAGGTTTCAATTCTTCCT+CGG | - | chr8_4:22291357-22291376 | None:intergenic | 30.0% | |
| ! | GTATTTGTTGCTAACAACAA+CGG | + | chr8_4:22291434-22291453 | Msa1319330:CDS | 30.0% |
| GATTTCTTCTTGTATGTAAC+AGG | + | chr8_4:22291549-22291568 | Msa1319330:intron | 30.0% | |
| !! | TACATTTTCGAGAAAGGTAA+AGG | + | chr8_4:22291658-22291677 | Msa1319330:CDS | 30.0% |
| TCACTCAATTCGTCTATAAA+TGG | - | chr8_4:22291776-22291795 | None:intergenic | 30.0% | |
| GCATTTAGAAATCTGACAAT+AGG | + | chr8_4:22291821-22291840 | Msa1319330:CDS | 30.0% | |
| TTCATTTCCTCCGTTTATTT+CGG | - | chr8_4:22291855-22291874 | None:intergenic | 30.0% | |
| GCTTAATATGTTCTCTCATT+TGG | - | chr8_4:22291899-22291918 | None:intergenic | 30.0% | |
| ! | AATCTTGTTATATGCTGTGA+TGG | + | chr8_4:22291986-22292005 | Msa1319330:three_prime_UTR | 30.0% |
| CTCAATTTAGATCCATGTAT+AGG | + | chr8_4:22292009-22292028 | Msa1319330:three_prime_UTR | 30.0% | |
| CAATTTAGATCCATGTATAG+GGG | + | chr8_4:22292011-22292030 | Msa1319330:three_prime_UTR | 30.0% | |
| TATTCAGGATCTGATTTCCT+CGG | - | chr8_4:22289914-22289933 | None:intergenic | 35.0% | |
| !!! | ACTCCTTTTGGAATTCAATG+TGG | + | chr8_4:22290098-22290117 | Msa1319330:intron | 35.0% |
| ! | TGTGGTGGTAACAGATTTTT+CGG | + | chr8_4:22290116-22290135 | Msa1319330:intron | 35.0% |
| TAGTTCATCATCAAGGTCAT+TGG | - | chr8_4:22290186-22290205 | None:intergenic | 35.0% | |
| ACAAAACCAATACGACAACT+TGG | + | chr8_4:22290248-22290267 | Msa1319330:CDS | 35.0% | |
| ! | TTTTGACCAAGTTGTCGTAT+TGG | - | chr8_4:22290257-22290276 | None:intergenic | 35.0% |
| GTTATATAGCAGTCCATTTG+AGG | + | chr8_4:22290309-22290328 | Msa1319330:CDS | 35.0% | |
| TGGACAACATGTATGTCATA+AGG | - | chr8_4:22290418-22290437 | None:intergenic | 35.0% | |
| ! | GATCTCATCCCTATATCTTT+TGG | + | chr8_4:22290443-22290462 | Msa1319330:intron | 35.0% |
| CAGACACACCAAAAGATATA+GGG | - | chr8_4:22290454-22290473 | None:intergenic | 35.0% | |
| TCTATGATGATTTATGGCAC+AGG | + | chr8_4:22290620-22290639 | Msa1319330:intron | 35.0% | |
| !!! | TTCAGGTTGTTATTTTGGTG+GGG | + | chr8_4:22290666-22290685 | Msa1319330:CDS | 35.0% |
| GAAAAAGAAAGACAAGAGCT+TGG | + | chr8_4:22290691-22290710 | Msa1319330:CDS | 35.0% | |
| ! | AGCTTGGTGAAATCAGAAAA+AGG | + | chr8_4:22290707-22290726 | Msa1319330:CDS | 35.0% |
| TTGGTGAAATCAGAAAAAGG+TGG | + | chr8_4:22290710-22290729 | Msa1319330:CDS | 35.0% | |
| ! | TCATAGGATTGTAGTCTTAC+AGG | - | chr8_4:22290745-22290764 | None:intergenic | 35.0% |
| AAAGGAGAAACTATTGTCAG+TGG | - | chr8_4:22290794-22290813 | None:intergenic | 35.0% | |
| ! | TTTCTCCTTTTATCACCCAT+GGG | + | chr8_4:22290804-22290823 | Msa1319330:intron | 35.0% |
| AATAGATCCTTGAACAAGTC+AGG | - | chr8_4:22290838-22290857 | None:intergenic | 35.0% | |
| !!! | GGTGTTGGTTTTATAAGTAG+AGG | + | chr8_4:22290914-22290933 | Msa1319330:intron | 35.0% |
| ATGGCTCATTCACTTGATAT+TGG | - | chr8_4:22291118-22291137 | None:intergenic | 35.0% | |
| TTTCCCCAACATCTATACAA+AGG | + | chr8_4:22291322-22291341 | Msa1319330:CDS | 35.0% | |
| TCTCCTTTGTATAGATGTTG+GGG | - | chr8_4:22291328-22291347 | None:intergenic | 35.0% | |
| CATCTCCTTTGTATAGATGT+TGG | - | chr8_4:22291330-22291349 | None:intergenic | 35.0% | |
| TGTATGTAACAGGCGATATA+TGG | + | chr8_4:22291559-22291578 | Msa1319330:intron | 35.0% | |
| GTATGTAACAGGCGATATAT+GGG | + | chr8_4:22291560-22291579 | Msa1319330:intron | 35.0% | |
| CTTCTTTGCATTTGGTCTAA+TGG | - | chr8_4:22291597-22291616 | None:intergenic | 35.0% | |
| CCTTTCTCGAAAATGTATTC+CGG | - | chr8_4:22291655-22291674 | None:intergenic | 35.0% | |
| ATAGACGAATTGAGTGAAGA+TGG | + | chr8_4:22291779-22291798 | Msa1319330:CDS | 35.0% | |
| AATTGAGTGAAGATGGAATC+CGG | + | chr8_4:22291786-22291805 | Msa1319330:CDS | 35.0% | |
| AGATTTCTAAATGCGAGCTT+AGG | - | chr8_4:22291815-22291834 | None:intergenic | 35.0% | |
| ! | TATGTTCTCTCATTTGGCTT+TGG | - | chr8_4:22291893-22291912 | None:intergenic | 35.0% |
| ATAATGCCACCAACTTGAAA+GGG | - | chr8_4:22291947-22291966 | None:intergenic | 35.0% | |
| AATAATGCCACCAACTTGAA+AGG | - | chr8_4:22291948-22291967 | None:intergenic | 35.0% | |
| !! | GTTGGTGGCATTATTAAACT+TGG | + | chr8_4:22291953-22291972 | Msa1319330:three_prime_UTR | 35.0% |
| ! | TGGGAGAATACTCAATTTTG+TGG | - | chr8_4:22292133-22292152 | None:intergenic | 35.0% |
| TCAGGTAATCCGTTACTAAA+CGG | - | chr8_4:22292165-22292184 | None:intergenic | 35.0% | |
| ! | GATGATGGTCTCTATTTCAT+CGG | + | chr8_4:22292319-22292338 | Msa1319330:three_prime_UTR | 35.0% |
| !! | TCGTTTTGTTATGGCTTGAA+CGG | + | chr8_4:22292386-22292405 | Msa1319330:three_prime_UTR | 35.0% |
| ATGTGGGCTTATATCAATCT+CGG | + | chr8_4:22292430-22292449 | Msa1319330:three_prime_UTR | 35.0% | |
| ATTCAGGATCTGATTTCCTC+GGG | - | chr8_4:22289913-22289932 | None:intergenic | 40.0% | |
| ACTAGGTGTTTCATCATGAC+AGG | - | chr8_4:22290054-22290073 | None:intergenic | 40.0% | |
| ATGATGAAACACCTAGTAGC+TGG | + | chr8_4:22290057-22290076 | Msa1319330:intron | 40.0% | |
| ACTGACATTAACCAGCTACT+AGG | - | chr8_4:22290071-22290090 | None:intergenic | 40.0% | |
| CCACCACATTGAATTCCAAA+AGG | - | chr8_4:22290104-22290123 | None:intergenic | 40.0% | |
| !!! | CCTTTTGGAATTCAATGTGG+TGG | + | chr8_4:22290101-22290120 | Msa1319330:intron | 40.0% |
| TGTAATGAGGATGCGAAAGA+TGG | + | chr8_4:22290280-22290299 | Msa1319330:CDS | 40.0% | |
| TTCACTGAACACACCTCAAA+TGG | - | chr8_4:22290325-22290344 | None:intergenic | 40.0% | |
| TGTTCAGTGAACCTTGTGTA+TGG | + | chr8_4:22290334-22290353 | Msa1319330:intron | 40.0% | |
| AACTTCCATCAAAGGCAAAG+TGG | + | chr8_4:22290368-22290387 | Msa1319330:intron | 40.0% | |
| CCAGACACACCAAAAGATAT+AGG | - | chr8_4:22290455-22290474 | None:intergenic | 40.0% | |
| !! | CCTATATCTTTTGGTGTGTC+TGG | + | chr8_4:22290452-22290471 | Msa1319330:intron | 40.0% |
| !!! | TCAGGTTGTTATTTTGGTGG+GGG | + | chr8_4:22290667-22290686 | Msa1319330:CDS | 40.0% |
| ! | GTTTCTCCTTTTATCACCCA+TGG | + | chr8_4:22290803-22290822 | Msa1319330:intron | 40.0% |
| ! | TTCTCCTTTTATCACCCATG+GGG | + | chr8_4:22290805-22290824 | Msa1319330:intron | 40.0% |
| !! | CAGTAATCCTGACTTGTTCA+AGG | + | chr8_4:22290828-22290847 | Msa1319330:intron | 40.0% |
| CACATACCTGTATGTTGCAT+CGG | + | chr8_4:22291253-22291272 | Msa1319330:CDS | 40.0% | |
| ACATACCTGTATGTTGCATC+GGG | + | chr8_4:22291254-22291273 | Msa1319330:CDS | 40.0% | |
| CGGGAAGAGAATGAAAGAAA+AGG | - | chr8_4:22291374-22291393 | None:intergenic | 40.0% | |
| CAATGTAATCAACAGCAGCT+AGG | - | chr8_4:22291397-22291416 | None:intergenic | 40.0% | |
| TGCTAACAACAACGGTAACA+TGG | + | chr8_4:22291442-22291461 | Msa1319330:CDS | 40.0% | |
| !! | CCGGAATACATTTTCGAGAA+AGG | + | chr8_4:22291652-22291671 | Msa1319330:CDS | 40.0% |
| TTTCTAAATGCGAGCTTAGG+TGG | - | chr8_4:22291812-22291831 | None:intergenic | 40.0% | |
| GAGAATTGCAAGAGCAACTT+TGG | + | chr8_4:22291920-22291939 | Msa1319330:three_prime_UTR | 40.0% | |
| ! | AACTTTGGTCCCTTTCAAGT+TGG | + | chr8_4:22291935-22291954 | Msa1319330:three_prime_UTR | 40.0% |
| TACGTACTTTCCCCTATACA+TGG | - | chr8_4:22292024-22292043 | None:intergenic | 40.0% | |
| TTCATTGTGAGCTCAGCTAT+AGG | + | chr8_4:22292094-22292113 | Msa1319330:three_prime_UTR | 40.0% | |
| TACTAAACGGGAAACAACGT+GGG | - | chr8_4:22292152-22292171 | None:intergenic | 40.0% | |
| TTACTAAACGGGAAACAACG+TGG | - | chr8_4:22292153-22292172 | None:intergenic | 40.0% | |
| ! | CGTTGTTTCCCGTTTAGTAA+CGG | + | chr8_4:22292153-22292172 | Msa1319330:intron | 40.0% |
| CAGGTAATCCGTTACTAAAC+GGG | - | chr8_4:22292164-22292183 | None:intergenic | 40.0% | |
| TGTAGGTGGTATAATGCACT+TGG | - | chr8_4:22292264-22292283 | None:intergenic | 40.0% | |
| TTCTTCAAGTGCAACGATGA+TGG | + | chr8_4:22292304-22292323 | Msa1319330:three_prime_UTR | 40.0% | |
| !! | TGACCAAGGTCGTTTTGTTA+TGG | + | chr8_4:22292377-22292396 | Msa1319330:three_prime_UTR | 40.0% |
| AAGCCATAACAAAACGACCT+TGG | - | chr8_4:22292383-22292402 | None:intergenic | 40.0% | |
| TTGTTATGGCTTGAACGGAT+TGG | + | chr8_4:22292391-22292410 | Msa1319330:three_prime_UTR | 40.0% | |
| GCTTATATCAATCTCGGCAA+TGG | + | chr8_4:22292436-22292455 | Msa1319330:three_prime_UTR | 40.0% | |
| GAGTTCCAGATAAGGTCATG+CGG | + | chr8_4:22289856-22289875 | Msa1319330:five_prime_UTR | 45.0% | |
| ATTGACCGCATGACCTTATC+TGG | - | chr8_4:22289864-22289883 | None:intergenic | 45.0% | |
| AGATAAGGTCATGCGGTCAA+TGG | + | chr8_4:22289863-22289882 | Msa1319330:five_prime_UTR | 45.0% | |
| TGCCAATACTCTTGAGACGA+CGG | + | chr8_4:22289951-22289970 | Msa1319330:CDS | 45.0% | |
| TCACACCACTTTGCCTTTGA+TGG | - | chr8_4:22290376-22290395 | None:intergenic | 45.0% | |
| CCTGAAAATGCCAGCATATC+TGG | - | chr8_4:22290652-22290671 | None:intergenic | 45.0% | |
| ! | CCAGATATGCTGGCATTTTC+AGG | + | chr8_4:22290649-22290668 | Msa1319330:CDS | 45.0% |
| ATACAGGATTTGAGCCCTGA+CGG | + | chr8_4:22291152-22291171 | Msa1319330:intron | 45.0% | |
| TCCTCTTACTCCTCATGAAG+TGG | + | chr8_4:22291196-22291215 | Msa1319330:CDS | 45.0% | |
| CCTCTTACTCCTCATGAAGT+GGG | + | chr8_4:22291197-22291216 | Msa1319330:CDS | 45.0% | |
| AGCATCAAACCCACTTCATG+AGG | - | chr8_4:22291209-22291228 | None:intergenic | 45.0% | |
| CATACCTGTATGTTGCATCG+GGG | + | chr8_4:22291255-22291274 | Msa1319330:CDS | 45.0% | |
| ATACCTGTATGTTGCATCGG+GGG | + | chr8_4:22291256-22291275 | Msa1319330:CDS | 45.0% | |
| GTTGCATCGGGGGAAATATA+CGG | + | chr8_4:22291266-22291285 | Msa1319330:CDS | 45.0% | |
| TTGGGGAAAAGATCTCTGAG+AGG | - | chr8_4:22291311-22291330 | None:intergenic | 45.0% | |
| TGTAATCAACAGCAGCTAGG+CGG | - | chr8_4:22291394-22291413 | None:intergenic | 45.0% | |
| GCGCTAAGCTTCTTTGCATT+TGG | - | chr8_4:22291605-22291624 | None:intergenic | 45.0% | |
| TTCTCACAGACACAAGTGCT+TGG | - | chr8_4:22291752-22291771 | None:intergenic | 45.0% | |
| GGAACTGACGCCGAAATAAA+CGG | + | chr8_4:22291842-22291861 | Msa1319330:CDS | 45.0% | |
| !! | TTTGGTCCCTTTCAAGTTGG+TGG | + | chr8_4:22291938-22291957 | Msa1319330:three_prime_UTR | 45.0% |
| ! | GTGAGTGCTGTCATGAATTG+AGG | - | chr8_4:22292220-22292239 | None:intergenic | 45.0% |
| ! | GCACTTGGTTTGAGTCATGT+TGG | - | chr8_4:22292249-22292268 | None:intergenic | 45.0% |
| TTATACCACCTACAGCAAGC+TGG | + | chr8_4:22292270-22292289 | Msa1319330:three_prime_UTR | 45.0% | |
| ATGTGTGTACGAGATGACCA+AGG | + | chr8_4:22292363-22292382 | Msa1319330:three_prime_UTR | 45.0% | |
| ! | TGGACGATTAGAGCTGGTTT+AGG | + | chr8_4:22292456-22292475 | Msa1319330:three_prime_UTR | 45.0% |
| TCGGGACACGCATGGTATAT+GGG | - | chr8_4:22289895-22289914 | None:intergenic | 50.0% | |
| GCCAATACTCTTGAGACGAC+GGG | + | chr8_4:22289952-22289971 | Msa1319330:CDS | 50.0% | |
| ! | ACCCGTCGTCTCAAGAGTAT+TGG | - | chr8_4:22289956-22289975 | None:intergenic | 50.0% |
| TACTCTTGAGACGACGGGTA+AGG | + | chr8_4:22289957-22289976 | Msa1319330:intron | 50.0% | |
| CAGGTTTGAGCCAGATATGC+TGG | + | chr8_4:22290639-22290658 | Msa1319330:intron | 50.0% | |
| ACTGCCCCATGGGTGATAAA+AGG | - | chr8_4:22290812-22290831 | None:intergenic | 50.0% | |
| AGTCAGGATTACTGCCCCAT+GGG | - | chr8_4:22290822-22290841 | None:intergenic | 50.0% | |
| AAGTCAGGATTACTGCCCCA+TGG | - | chr8_4:22290823-22290842 | None:intergenic | 50.0% | |
| CCCACTTCATGAGGAGTAAG+AGG | - | chr8_4:22291200-22291219 | None:intergenic | 50.0% | |
| TTTCCCCCGATGCAACATAC+AGG | - | chr8_4:22291262-22291281 | None:intergenic | 50.0% | |
| CATCGGGGGAAATATACGGT+GGG | + | chr8_4:22291270-22291289 | Msa1319330:CDS | 50.0% | |
| ATCGGGGGAAATATACGGTG+GGG | + | chr8_4:22291271-22291290 | Msa1319330:CDS | 50.0% | |
| ! | AAGATCTCTGAGAGGCTGCA+TGG | - | chr8_4:22291303-22291322 | None:intergenic | 50.0% |
| TACAAAGGAGATGCTTGCCG+AGG | + | chr8_4:22291337-22291356 | Msa1319330:CDS | 50.0% | |
| GTAATCAACAGCAGCTAGGC+GGG | - | chr8_4:22291393-22291412 | None:intergenic | 50.0% | |
| ACAACAACGGTAACATGGCC+AGG | + | chr8_4:22291447-22291466 | Msa1319330:CDS | 50.0% | |
| AACATGGCCAGGATTCTTGC+TGG | + | chr8_4:22291458-22291477 | Msa1319330:CDS | 50.0% | |
| CCTTTGACCAGCAAGAATCC+TGG | - | chr8_4:22291468-22291487 | None:intergenic | 50.0% | |
| CCAGGATTCTTGCTGGTCAA+AGG | + | chr8_4:22291465-22291484 | Msa1319330:CDS | 50.0% | |
| GTTCATGGCGAGGCATGAAA+TGG | + | chr8_4:22291628-22291647 | Msa1319330:CDS | 50.0% | |
| ! | AAGGTAAAGGCGTGCCAAAG+AGG | + | chr8_4:22291671-22291690 | Msa1319330:CDS | 50.0% |
| GCGTGCCAAAGAGGATTCAT+GGG | + | chr8_4:22291680-22291699 | Msa1319330:CDS | 50.0% | |
| GCTCTCCCATGAATCCTCTT+TGG | - | chr8_4:22291688-22291707 | None:intergenic | 50.0% | |
| TAAATGCGAGCTTAGGTGGC+CGG | - | chr8_4:22291808-22291827 | None:intergenic | 50.0% | |
| ACTGACGCCGAAATAAACGG+AGG | + | chr8_4:22291845-22291864 | Msa1319330:CDS | 50.0% | |
| CGGCAAAGCAACTCAGTTAC+TGG | + | chr8_4:22292339-22292358 | Msa1319330:three_prime_UTR | 50.0% | |
| CGTCACATGAGGCTACATGT+GGG | + | chr8_4:22292414-22292433 | Msa1319330:three_prime_UTR | 50.0% | |
| CGGGACACGCATGGTATATG+GGG | - | chr8_4:22289894-22289913 | None:intergenic | 55.0% | |
| CTCGGGACACGCATGGTATA+TGG | - | chr8_4:22289896-22289915 | None:intergenic | 55.0% | |
| CATATACCATGCGTGTCCCG+AGG | + | chr8_4:22289894-22289913 | Msa1319330:exon | 55.0% | |
| TGATTTCCTCGGGACACGCA+TGG | - | chr8_4:22289903-22289922 | None:intergenic | 55.0% | |
| CACGCTTTCGTTCTCCGTCA+GGG | - | chr8_4:22291169-22291188 | None:intergenic | 55.0% | |
| ! | CTGACGGAGAACGAAAGCGT+GGG | + | chr8_4:22291168-22291187 | Msa1319330:CDS | 55.0% |
| GCATCGGGGGAAATATACGG+TGG | + | chr8_4:22291269-22291288 | Msa1319330:CDS | 55.0% | |
| GAAGCTTAGCGCGCTGTTCA+TGG | + | chr8_4:22291613-22291632 | Msa1319330:CDS | 55.0% | |
| TGGCGAGGCATGAAATGGAC+CGG | + | chr8_4:22291633-22291652 | Msa1319330:CDS | 55.0% | |
| GGCGTGCCAAAGAGGATTCA+TGG | + | chr8_4:22291679-22291698 | Msa1319330:CDS | 55.0% | |
| AGAGGATTCATGGGAGAGCC+AGG | + | chr8_4:22291689-22291708 | Msa1319330:CDS | 55.0% | |
| GAGCCAGGAGAGATGAAAGC+TGG | + | chr8_4:22291704-22291723 | Msa1319330:CDS | 55.0% | |
| CGTCCAGCTTTCATCTCTCC+TGG | - | chr8_4:22291710-22291729 | None:intergenic | 55.0% | |
| GGAGAGATGAAAGCTGGACG+AGG | + | chr8_4:22291710-22291729 | Msa1319330:CDS | 55.0% | |
| !! | GAAGAGCTCCAGCTTGCTGT+AGG | - | chr8_4:22292281-22292300 | None:intergenic | 55.0% |
| !! | GAACGGATTGGCGTCACATG+AGG | + | chr8_4:22292403-22292422 | Msa1319330:three_prime_UTR | 55.0% |
| GCGTCACATGAGGCTACATG+TGG | + | chr8_4:22292413-22292432 | Msa1319330:three_prime_UTR | 55.0% | |
| CGGCAATGGACGATTAGAGC+TGG | + | chr8_4:22292450-22292469 | Msa1319330:three_prime_UTR | 55.0% | |
| CCACGCTTTCGTTCTCCGTC+AGG | - | chr8_4:22291170-22291189 | None:intergenic | 60.0% | |
| CCTGACGGAGAACGAAAGCG+TGG | + | chr8_4:22291167-22291186 | Msa1319330:CDS | 60.0% | |
| GGTTTGATGCTGCGAGCGCT+TGG | + | chr8_4:22291218-22291237 | Msa1319330:CDS | 60.0% | |
| TTAGCGCGCTGTTCATGGCG+AGG | + | chr8_4:22291618-22291637 | Msa1319330:CDS | 60.0% | |
| !! | GAGCTCCAGCTTGCTGTAGG+TGG | - | chr8_4:22292278-22292297 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 22289788 | 22292515 | 22289788 | ID=Msa1319330;Name=Msa1319330 |
| chr8_4 | mRNA | 22289788 | 22292515 | 22289788 | ID=Msa1319330-mRNA-1;Parent=Msa1319330;Name=Msa1319330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=114|1|1|1|0.8|0.66|6|482|343 |
| chr8_4 | exon | 22289788 | 22289973 | 22289788 | ID=Msa1319330-mRNA-1:exon:7913;Parent=Msa1319330-mRNA-1 |
| chr8_4 | exon | 22290149 | 22290330 | 22290149 | ID=Msa1319330-mRNA-1:exon:7914;Parent=Msa1319330-mRNA-1 |
| chr8_4 | exon | 22290642 | 22290744 | 22290642 | ID=Msa1319330-mRNA-1:exon:7915;Parent=Msa1319330-mRNA-1 |
| chr8_4 | exon | 22291158 | 22291486 | 22291158 | ID=Msa1319330-mRNA-1:exon:7916;Parent=Msa1319330-mRNA-1 |
| chr8_4 | exon | 22291571 | 22292115 | 22291571 | ID=Msa1319330-mRNA-1:exon:7917;Parent=Msa1319330-mRNA-1 |
| chr8_4 | exon | 22292233 | 22292515 | 22292233 | ID=Msa1319330-mRNA-1:exon:7918;Parent=Msa1319330-mRNA-1 |
| chr8_4 | five_prime_UTR | 22289788 | 22289901 | 22289788 | ID=Msa1319330-mRNA-1:five_prime_utr;Parent=Msa1319330-mRNA-1 |
| chr8_4 | CDS | 22289902 | 22289973 | 22289902 | ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1 |
| chr8_4 | CDS | 22290149 | 22290330 | 22290149 | ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1 |
| chr8_4 | CDS | 22290642 | 22290744 | 22290642 | ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1 |
| chr8_4 | CDS | 22291158 | 22291486 | 22291158 | ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1 |
| chr8_4 | CDS | 22291571 | 22291916 | 22291571 | ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1 |
| chr8_4 | three_prime_UTR | 22291917 | 22292115 | 22291917 | ID=Msa1319330-mRNA-1:three_prime_utr;Parent=Msa1319330-mRNA-1 |
| chr8_4 | three_prime_UTR | 22292233 | 22292515 | 22292233 | ID=Msa1319330-mRNA-1:three_prime_utr;Parent=Msa1319330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
