AlfalfaGEDB | Msa1319330

M. sativa cultivar zhongmu-4 / Msa1319330

KEGG: -
GO: -
PFAM: PF10250.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1319330	XP_024638667.1	98.834	343	4	0	1	343	196	538	0.0	705

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1319330	sp\|Q8LPF8\|OFT29_ARATH	79.461	297	61	0	2	298	211	507	3.70e-179	510

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1319330	G7JIV4	98.834	343	4	0	1	343	196	538	0.0	705

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002420	Msa1319330	0.832022	1.197805e-55	-8.615850e-47
Msa0106320	Msa1319330	0.802236	6.173170e-49	-8.615850e-47
Msa0152870	Msa1319330	0.818273	2.136324e-52	-8.615850e-47
Msa0168480	Msa1319330	0.809337	1.988713e-50	-8.615850e-47
Msa0435420	Msa1319330	0.809828	1.559893e-50	-8.615850e-47
Msa0518030	Msa1319330	0.808919	2.444471e-50	-8.615850e-47
Msa1079230	Msa1319330	0.806008	1.013407e-49	-8.615850e-47
Msa1124110	Msa1319330	0.805434	1.337686e-49	-8.615850e-47
Msa1143650	Msa1319330	0.815395	9.449948e-52	-8.615850e-47
Msa1169040	Msa1319330	0.801782	7.653862e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1319330	MtrunA17_Chr4g0056061	98.834	343	4	0	1	343	196	538	0.0	705
Msa1319330	MtrunA17_Chr5g0399311	86.379	301	41	0	1	301	212	512	0.0	561
Msa1319330	MtrunA17_Chr3g0143821	64.865	296	103	1	1	295	198	493	3.99e-143	416
Msa1319330	MtrunA17_Chr5g0448581	62.179	312	116	2	1	311	205	515	4.74e-143	417
Msa1319330	MtrunA17_Chr1g0160781	47.710	262	124	5	1	249	240	501	1.46e-76	245
Msa1319330	MtrunA17_Chr4g0043911	42.222	315	167	8	1	301	241	554	4.43e-74	239
Msa1319330	MtrunA17_Chr3g0077321	40.968	310	168	7	1	296	238	546	5.59e-69	225
Msa1319330	MtrunA17_Chr5g0424241	45.489	266	124	6	1	249	248	509	2.55e-67	221
Msa1319330	MtrunA17_Chr5g0417871	40.397	302	167	6	7	296	179	479	4.23e-67	219
Msa1319330	MtrunA17_Chr4g0042711	39.286	308	174	6	7	302	191	497	3.54e-65	214

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1319330	AT4G16650.2	79.461	297	61	0	2	298	211	507	3.76e-180	510
Msa1319330	AT4G16650.1	79.461	297	61	0	2	298	211	507	3.76e-180	510
Msa1319330	AT1G76270.1	57.941	340	140	2	1	339	192	529	3.19e-145	422
Msa1319330	AT4G38390.1	64.407	295	104	1	1	294	211	505	1.24e-142	415
Msa1319330	AT1G20550.1	62.838	296	109	1	1	295	195	490	1.05e-141	413
Msa1319330	AT1G14970.3	42.675	314	157	9	1	296	100	408	1.46e-77	244
Msa1319330	AT2G01480.2	48.855	262	121	6	1	249	245	506	1.53e-77	247
Msa1319330	AT1G14970.2	42.675	314	157	9	1	296	126	434	3.27e-77	244
Msa1319330	AT2G01480.1	43.791	306	150	8	1	289	245	545	3.69e-77	247
Msa1319330	AT1G14970.1	42.675	314	157	9	1	296	246	554	5.40e-76	244

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Find 121 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTTTCAATTCTTCCT+CGG	0.501153	8_4:-22291354	None:intergenic
AACATGGCCAGGATTCTTGC+TGG	0.456728	8_4:+22291458	Msa1319330:CDS
AACTTTGGTCCCTTTCAAGT+TGG	0.509880	8_4:+22291935	Msa1319330:three_prime_UTR
AAGATCTCTGAGAGGCTGCA+TGG	0.577808	8_4:-22291300	None:intergenic
AAGCCATAACAAAACGACCT+TGG	0.599910	8_4:-22292380	None:intergenic
AAGGTAAAGGCGTGCCAAAG+AGG	0.620555	8_4:+22291671	Msa1319330:CDS
AATAATGCCACCAACTTGAA+AGG	0.450326	8_4:-22291945	None:intergenic
AATCTTGTTATATGCTGTGA+TGG	0.573882	8_4:+22291986	Msa1319330:three_prime_UTR
AATTGAGTGAAGATGGAATC+CGG	0.501267	8_4:+22291786	Msa1319330:CDS
ACAAAACCAATACGACAACT+TGG	0.536194	8_4:+22290248	Msa1319330:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCAATTAACATCGAAAATGT+TGG	-	chr8_4:22289796-22289815	None:intergenic	30.0%
TGTTAAAAGAGTTCCAGATA+AGG	+	chr8_4:22289848-22289867	Msa1319330:five_prime_UTR	30.0%
TATAGGGATGAGATCATATA+TGG	-	chr8_4:22290438-22290457	None:intergenic	30.0%
GATAAAGGAGTTGTGAAAAT+GGG	-	chr8_4:22290490-22290509	None:intergenic	30.0%
TGATAAAGGAGTTGTGAAAA+TGG	-	chr8_4:22290491-22290510	None:intergenic	30.0%
TCAATTTCAGACAGTGATAA+AGG	-	chr8_4:22290505-22290524	None:intergenic	30.0%
GATCATGAGAATTCAAACAT+TGG	-	chr8_4:22290602-22290621	None:intergenic	30.0%
TATTGTCAGTGGAAATGATA+TGG	-	chr8_4:22290783-22290802	None:intergenic	30.0%
TGTATTATTGCAAGAGGTAA+TGG	-	chr8_4:22291137-22291156	None:intergenic	30.0%
ATTACCTCTTGCAATAATAC+AGG	+	chr8_4:22291136-22291155	Msa1319330:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	22289788	22292515	22289788	ID=Msa1319330;Name=Msa1319330
chr8_4	mRNA	22289788	22292515	22289788	ID=Msa1319330-mRNA-1;Parent=Msa1319330;Name=Msa1319330-mRNA-1;_AED=0.13;_eAED=0.13;_QI=114\|1\|1\|1\|0.8\|0.66\|6\|482\|343
chr8_4	exon	22289788	22289973	22289788	ID=Msa1319330-mRNA-1:exon:7913;Parent=Msa1319330-mRNA-1
chr8_4	exon	22290149	22290330	22290149	ID=Msa1319330-mRNA-1:exon:7914;Parent=Msa1319330-mRNA-1
chr8_4	exon	22290642	22290744	22290642	ID=Msa1319330-mRNA-1:exon:7915;Parent=Msa1319330-mRNA-1
chr8_4	exon	22291158	22291486	22291158	ID=Msa1319330-mRNA-1:exon:7916;Parent=Msa1319330-mRNA-1
chr8_4	exon	22291571	22292115	22291571	ID=Msa1319330-mRNA-1:exon:7917;Parent=Msa1319330-mRNA-1
chr8_4	exon	22292233	22292515	22292233	ID=Msa1319330-mRNA-1:exon:7918;Parent=Msa1319330-mRNA-1
chr8_4	five_prime_UTR	22289788	22289901	22289788	ID=Msa1319330-mRNA-1:five_prime_utr;Parent=Msa1319330-mRNA-1
chr8_4	CDS	22289902	22289973	22289902	ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1
chr8_4	CDS	22290149	22290330	22290149	ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1
chr8_4	CDS	22290642	22290744	22290642	ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1
chr8_4	CDS	22291158	22291486	22291158	ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1
chr8_4	CDS	22291571	22291916	22291571	ID=Msa1319330-mRNA-1:cds;Parent=Msa1319330-mRNA-1
chr8_4	three_prime_UTR	22291917	22292115	22291917	ID=Msa1319330-mRNA-1:three_prime_utr;Parent=Msa1319330-mRNA-1
chr8_4	three_prime_UTR	22292233	22292515	22292233	ID=Msa1319330-mRNA-1:three_prime_utr;Parent=Msa1319330-mRNA-1

Gene Sequence

>Msa1319330

ATGCGTGTCCCGAGGAAATCAGATCCTGAATATTATCTTGATCAAGTTTTGCCAATACTCTTGAGACGACGGGTTCTACAATTGACGAAGTTTGACTATAGACTTGCCAATGACCTTGATGATGAACTACAAAAACTACGTTGCCGTGTTAATTATCATGCTTTGAGATTTACAAAACCAATACGACAACTTGGTCAAAAAATTGTAATGAGGATGCGAAAGATGGCAAACCGTTATATAGCAGTCCATTTGAGGTTTGAGCCAGATATGCTGGCATTTTCAGGTTGTTATTTTGGTGGGGGTGAAAAAGAAAGACAAGAGCTTGGTGAAATCAGAAAAAGGTGGACAACATTGCCTGATTTGAGCCCTGACGGAGAACGAAAGCGTGGGAAATGTCCTCTTACTCCTCATGAAGTGGGTTTGATGCTGCGAGCGCTTGGTTATACAAATGACACATACCTGTATGTTGCATCGGGGGAAATATACGGTGGGGATGAAACCATGCAGCCTCTCAGAGATCTTTTCCCCAACATCTATACAAAGGAGATGCTTGCCGAGGAAGAATTGAAACCTTTTCTTTCATTCTCTTCCCGCCTAGCTGCTGTTGATTACATTGTTTGTGATGAAAGTAATGTATTTGTTGCTAACAACAACGGTAACATGGCCAGGATTCTTGCTGGTCAAAGGCGATATATGGGTCACAAGAGAACCATTAGACCAAATGCAAAGAAGCTTAGCGCGCTGTTCATGGCGAGGCATGAAATGGACCGGAATACATTTTCGAGAAAGGTAAAGGCGTGCCAAAGAGGATTCATGGGAGAGCCAGGAGAGATGAAAGCTGGACGAGGAGAGTTTCATGAATATCCAAGCACTTGTGTCTGTGAGAAACCATTTATAGACGAATTGAGTGAAGATGGAATCCGGCCACCTAAGCTCGCATTTAGAAATCTGACAATAGGAACTGACGCCGAAATAAACGGAGGAAATGAAGAAAGTTTTGAGCTACCAAAGCCAAATGAGAGAACATATTAA

Protein sequence

>Msa1319330

MRVPRKSDPEYYLDQVLPILLRRRVLQLTKFDYRLANDLDDELQKLRCRVNYHALRFTKPIRQLGQKIVMRMRKMANRYIAVHLRFEPDMLAFSGCYFGGGEKERQELGEIRKRWTTLPDLSPDGERKRGKCPLTPHEVGLMLRALGYTNDTYLYVASGEIYGGDETMQPLRDLFPNIYTKEMLAEEELKPFLSFSSRLAAVDYIVCDESNVFVANNNGNMARILAGQRRYMGHKRTIRPNAKKLSALFMARHEMDRNTFSRKVKACQRGFMGEPGEMKAGRGEFHEYPSTCVCEKPFIDELSEDGIRPPKLAFRNLTIGTDAEINGGNEESFELPKPNERTY*