AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648180

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648180 MtrunA17_Chr4g0040251 98.089 471 9 0 1 471 1 471 0.0 952
Msa0648180 MtrunA17_Chr4g0040261 85.408 466 67 1 1 466 34 498 0.0 816
Msa0648180 MtrunA17_Chr4g0040271 84.856 416 62 1 1 416 1 415 0.0 744
Msa0648180 MtrunA17_Chr4g0040221 64.882 467 157 4 1 464 1 463 0.0 595
Msa0648180 MtrunA17_Chr7g0217051 59.267 464 187 2 5 467 7 469 0.0 583
Msa0648180 MtrunA17_Chr4g0040001 61.373 466 173 4 1 460 1 465 0.0 569
Msa0648180 MtrunA17_Chr4g0040231 59.957 467 178 4 4 464 5 468 0.0 559
Msa0648180 MtrunA17_Chr4g0040011 61.717 431 158 4 1 425 9 438 0.0 526
Msa0648180 MtrunA17_Chr7g0248011 50.985 457 220 4 2 456 3 457 8.63e-161 463
Msa0648180 MtrunA17_Chr6g0457271 54.848 361 152 4 66 419 5 361 4.14e-140 407
Msa0648180 MtrunA17_Chr6g0457281 51.546 291 135 3 86 371 1 290 5.24e-102 306
Msa0648180 MtrunA17_Chr1g0147071 26.809 470 302 13 5 448 6 459 2.02e-45 165
Msa0648180 MtrunA17_Chr5g0393471 27.181 298 201 8 161 454 42 327 1.53e-24 104
Msa0648180 MtrunA17_Chr6g0457291 55.224 67 30 0 394 460 1 67 5.49e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648180 AT3G49190.1 27.848 474 291 14 9 448 18 474 4.30e-50 179
Msa0648180 AT5G53390.1 26.526 475 318 11 9 463 15 478 7.13e-50 177
Msa0648180 AT5G12420.1 28.205 468 294 12 9 448 7 460 1.59e-49 176
Msa0648180 AT5G16350.3 28.322 459 301 13 1 448 1 442 4.46e-48 172
Msa0648180 AT3G49200.1 28.480 467 301 13 9 448 26 486 7.18e-47 169
Msa0648180 AT5G12420.2 28.538 424 262 11 9 404 7 417 1.14e-46 168
Msa0648180 AT3G49210.1 27.447 470 300 10 9 442 26 490 4.14e-46 168
Msa0648180 AT5G16350.1 27.673 477 301 14 1 448 1 462 1.05e-45 166
Msa0648180 AT5G22490.1 28.358 469 284 18 10 448 12 458 2.39e-44 162
Msa0648180 AT1G72110.1 25.726 482 330 12 6 470 9 479 8.32e-44 160
Msa0648180 AT5G53380.1 26.154 455 301 9 9 440 9 451 9.65e-43 158
Msa0648180 AT2G38995.2 26.004 473 318 15 9 463 21 479 1.87e-39 149
Msa0648180 AT1G72110.2 25.105 478 329 12 6 470 9 470 5.82e-39 147
Msa0648180 AT5G37300.1 27.235 481 315 13 9 470 17 481 3.05e-38 145
Msa0648180 AT5G37300.4 27.235 481 315 13 9 470 35 499 3.86e-38 145
Msa0648180 AT5G16350.2 28.212 397 242 13 1 368 1 383 6.46e-37 140
Msa0648180 AT3G49210.2 27.604 384 237 10 9 356 26 404 2.72e-35 136
Msa0648180 AT5G22490.2 28.792 389 227 17 10 368 12 380 1.99e-33 130
Msa0648180 AT2G38995.3 25.899 417 278 14 65 463 7 410 3.48e-32 127
Msa0648180 AT2G38995.4 25.549 364 252 8 65 416 7 363 5.16e-29 118
Msa0648180 AT5G37300.2 27.273 374 246 9 9 368 35 396 6.28e-28 115
Msa0648180 AT5G37300.3 28.679 265 180 6 9 270 35 293 2.30e-20 92.4
Msa0648180 AT2G38995.1 22.422 223 157 6 252 463 72 289 8.04e-11 63.5

Find 191 sgRNAs with CRISPR-Local

Find 426 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCAATCTCTGATTT+TGG 0.127994 4_3:+54589570 Msa0648180:CDS
TATTATCAACCAAATCATTT+TGG 0.185564 4_3:-54587851 None:intergenic
GTTTAGTTTCATCAATAAAA+AGG 0.188662 4_3:+54594955 Msa0648180:three_prime_UTR
TGCTTTCCAAACAAAATCTA+AGG 0.198564 4_3:-54590380 None:intergenic
ATTATTAACATGTGCCTTTA+GGG 0.219793 4_3:-54588255 None:intergenic
TCCCAAAGGGGTTTGTCTTT+TGG 0.228493 4_3:-54589321 None:intergenic
TATTGTCCACTTGGACTTAC+TGG 0.233113 4_3:-54588915 None:intergenic
TGTAAGAAATTGTGCAAATT+TGG 0.233415 4_3:-54588331 None:intergenic
CTTATTTGATAAAAGTTAAT+AGG 0.234055 4_3:-54587725 None:intergenic
ACTTCATATCCAAGATTAAA+TGG 0.237464 4_3:-54587097 None:intergenic
GGATGAATGGTTCGGGAATT+AGG 0.242068 4_3:+54587302 Msa0648180:five_prime_UTR
TAATGCTAATTTGTGTCTTT+AGG 0.245104 4_3:-54588387 None:intergenic
TTGTAGTTTCCGACCTATTT+GGG 0.246930 4_3:-54587635 None:intergenic
AATTATTAACATGTGCCTTT+AGG 0.250498 4_3:-54588256 None:intergenic
TGAATTGAAAAGGGAGAATA+TGG 0.251715 4_3:-54589556 None:intergenic
TAATTCGAGCACCGCTTAAA+TGG 0.255953 4_3:-54587982 None:intergenic
AATGCTAATTTGTGTCTTTA+GGG 0.265152 4_3:-54588386 None:intergenic
GGCTGGCTTGGCTTAACTTT+GGG 0.275418 4_3:-54590348 None:intergenic
TATGCAAGAGATTGATAATA+AGG 0.279179 4_3:+54590189 Msa0648180:CDS
GGAACCTTAAAATGATCTTT+TGG 0.288626 4_3:-54589216 None:intergenic
TTTGTAGTTTCCGACCTATT+TGG 0.289084 4_3:-54587636 None:intergenic
ACTAAAATAGCTTATAAATA+AGG 0.310691 4_3:-54595133 None:intergenic
TCTAACTACCGATATGTTCT+TGG 0.311238 4_3:-54587126 None:intergenic
TAGTACAAGTGAGGGGCTTT+TGG 0.317022 4_3:+54587566 Msa0648180:five_prime_UTR
TAATAGGAAAGCTGCTCAAT+AGG 0.317521 4_3:-54587709 None:intergenic
TTCTCAATTCCATTTAATCT+TGG 0.322924 4_3:+54587088 Msa0648180:five_prime_UTR
AACCTAACAAGACATTATTC+AGG 0.326287 4_3:-54587351 None:intergenic
TTAAGACTCGGGCCTGGTTC+GGG 0.333109 4_3:-54587326 None:intergenic
AAGATGAAATGAACAATCTA+TGG 0.335275 4_3:+54594867 Msa0648180:exon
GGCTGATTCAAAATCTCCTT+GGG 0.340651 4_3:+54590294 Msa0648180:CDS
AAGATGATAAATCACCTATA+TGG 0.340719 4_3:+54589622 Msa0648180:CDS
ACAATAAATGATGTGATTAC+TGG 0.341873 4_3:+54590139 Msa0648180:CDS
TGTTTCATTAGAAATTGATT+TGG 0.343128 4_3:-54587753 None:intergenic
TTACTTACCTTCAAATATTA+CGG 0.345358 4_3:+54587791 Msa0648180:five_prime_UTR
CATTCGTACTTAAATTTGTA+TGG 0.350413 4_3:-54588569 None:intergenic
TTCCTGAATAATGTCTTGTT+AGG 0.357735 4_3:+54587349 Msa0648180:five_prime_UTR
TTCCACTGGCCCGATCAAAT+TGG 0.359504 4_3:-54591782 None:intergenic
TTGGTAACTTCCAATGTTCC+TGG 0.365297 4_3:-54590251 None:intergenic
ATGATGAAGTTTGAATATTA+TGG 0.371436 4_3:-54589385 None:intergenic
AATTGTGATGATTTGCGGTT+AGG 0.374258 4_3:-54589492 None:intergenic
AGACTGTGTAAAACAAATAA+TGG 0.374400 4_3:+54588731 Msa0648180:five_prime_UTR
ATTAAGACTCGGGCCTGGTT+CGG 0.375507 4_3:-54587327 None:intergenic
GATATGCAGCTGAAATTAAG+AGG 0.384094 4_3:+54590463 Msa0648180:CDS
AATAGGAAAGCTGCTCAATA+GGG 0.386509 4_3:-54587708 None:intergenic
AATGGAATTGAGAACATATA+AGG 0.387484 4_3:-54587079 None:intergenic
GCATGCCAGCACAATTTGAT+TGG 0.387959 4_3:-54588803 None:intergenic
AATCAGAGATTGAATTGAAA+AGG 0.391399 4_3:-54589566 None:intergenic
AATCTCCATTGATGCTGCTT+TGG 0.391558 4_3:-54594832 None:intergenic
TGATTCAGACAAATCATATA+CGG 0.401790 4_3:+54587891 Msa0648180:five_prime_UTR
ACCAAAAGACAAACCCCTTT+GGG 0.401857 4_3:+54589320 Msa0648180:CDS
AGGCTGGCTTGGCTTAACTT+TGG 0.403108 4_3:-54590349 None:intergenic
GTATATGATTTGTCTGAATC+AGG 0.405870 4_3:-54587889 None:intergenic
GCAGTTGCTAAACATCTATA+TGG 0.407126 4_3:+54591730 Msa0648180:CDS
AATCAGCCTTGGTCATGTCT+TGG 0.407622 4_3:-54590279 None:intergenic
TTTCATCGAGAGAGAATGAT+AGG 0.409102 4_3:-54589689 None:intergenic
CACCAAAAGACAAACCCCTT+TGG 0.410996 4_3:+54589319 Msa0648180:CDS
AGCAACCTAAATAAAATAAC+AGG 0.411301 4_3:+54587942 Msa0648180:five_prime_UTR
CAAAATCTAAGGGGTTAGAT+AGG 0.412591 4_3:-54590369 None:intergenic
TTACAGGGGATGAATGGTTC+GGG 0.415039 4_3:+54587295 Msa0648180:five_prime_UTR
GGTGAGCACGTGAGCAAACT+TGG 0.417995 4_3:+54587505 Msa0648180:five_prime_UTR
ATGCATTGCTTCTTATAAAC+CGG 0.418010 4_3:-54587399 None:intergenic
CAAACTTGGATGAATGGAAT+AGG 0.418403 4_3:+54587519 Msa0648180:five_prime_UTR
GCCAGTGGAACCTATGGCTT+TGG 0.419946 4_3:+54591795 Msa0648180:CDS
AGGTAAATCAACATTGTAAC+CGG 0.420538 4_3:+54587380 Msa0648180:five_prime_UTR
GAGGAGAAGCGTGGATTGAT+AGG 0.424660 4_3:-54589041 None:intergenic
TTTACAGGGGATGAATGGTT+CGG 0.425128 4_3:+54587294 Msa0648180:five_prime_UTR
CATAAACGTGGCTCTTGAAC+GGG 0.426416 4_3:-54588632 None:intergenic
GCTTGGCTTAACTTTGGGAT+TGG 0.427085 4_3:-54590343 None:intergenic
ATAAATTCATGCCGATCGAC+TGG 0.427881 4_3:-54588010 None:intergenic
TGGTCATGTCTTGGATTGAT+TGG 0.428689 4_3:-54590270 None:intergenic
CTAACTACCGATATGTTCTT+GGG 0.431390 4_3:-54587125 None:intergenic
ATAAAGATGGAAATATGAAA+TGG 0.432943 4_3:+54589175 Msa0648180:CDS
ATCTAAGGGGTTAGATAGGC+TGG 0.434061 4_3:-54590365 None:intergenic
AGGCTGATTCAAAATCTCCT+TGG 0.434769 4_3:+54590293 Msa0648180:CDS
GCAAGAATGTCAAATTCAAC+AGG 0.440973 4_3:+54590211 Msa0648180:CDS
ATTATTCTTGAAAATACAAA+TGG 0.443660 4_3:-54587212 None:intergenic
TGAAAACTTAGTCCCCAAAT+AGG 0.444589 4_3:+54587622 Msa0648180:five_prime_UTR
CATATCCAAAGCAGCATCAA+TGG 0.444606 4_3:+54594827 Msa0648180:CDS
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_3:+54589413 Msa0648180:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_3:+54590140 Msa0648180:CDS
CCTTCCTCACCATTCCATAT+AGG 0.456878 4_3:-54589636 None:intergenic
TTAACAATTGTGATGATTTG+CGG 0.460575 4_3:-54589497 None:intergenic
ATAGCTTGAGAGTCATCAAT+TGG 0.464600 4_3:-54588993 None:intergenic
AACAATCTATGGAGAAAGAG+AGG 0.466969 4_3:+54594878 Msa0648180:exon
GTCTCTTTACCTCGAGAACT+AGG 0.469664 4_3:+54587813 Msa0648180:five_prime_UTR
CAGACTAACTTGTGCCCTAA+AGG 0.473505 4_3:+54588241 Msa0648180:five_prime_UTR
AGGGGTTAGATAGGCTGGCT+TGG 0.474507 4_3:-54590360 None:intergenic
ATAAAATACAAGCCTTTCAC+AGG 0.476240 4_3:-54591826 None:intergenic
GCACCGCTTAAATGGTTTCA+AGG 0.481651 4_3:-54587974 None:intergenic
ATCAGAGATTGAATTGAAAA+GGG 0.482081 4_3:-54589565 None:intergenic
TGTCAAAGATATTAATAGAA+AGG 0.483733 4_3:+54589295 Msa0648180:CDS
GAGCCACGTTTATGATCAAA+AGG 0.484061 4_3:+54588641 Msa0648180:five_prime_UTR
ATAACAATCAAGTCTAAGCT+TGG 0.484750 4_3:+54589714 Msa0648180:CDS
TTGTCATGTCCAATTTGATC+GGG 0.484819 4_3:+54591773 Msa0648180:CDS
TTTGATTGGATCCTCACATC+TGG 0.485042 4_3:-54588789 None:intergenic
GATCGGGCCAGTGGAACCTA+TGG 0.490902 4_3:+54591789 Msa0648180:CDS
TGCTTTGGATATGATTTCAA+AGG 0.491056 4_3:-54594817 None:intergenic
AATGTCAAATTCAACAGGAT+TGG 0.492379 4_3:+54590216 Msa0648180:CDS
GTTGATAATACAAGACAAGA+AGG 0.495127 4_3:+54587864 Msa0648180:five_prime_UTR
AAAGAGACCGTAATATTTGA+AGG 0.496234 4_3:-54587798 None:intergenic
CGTGAGCAAACTTGGATGAA+TGG 0.497993 4_3:+54587513 Msa0648180:five_prime_UTR
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_3:-54591796 None:intergenic
AAAAGGGAGAATATGGTTGA+AGG 0.512885 4_3:-54589549 None:intergenic
GATAACATGGATTTCCCAAA+GGG 0.515587 4_3:-54589334 None:intergenic
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_3:-54591805 None:intergenic
GCTTTCCAAACAAAATCTAA+GGG 0.520219 4_3:-54590379 None:intergenic
GATGAATGGAATAGGAATGT+TGG 0.520323 4_3:+54587527 Msa0648180:five_prime_UTR
AGTGCATAGATCATAATCAA+TGG 0.522959 4_3:+54588869 Msa0648180:exon
TGGTTGTTGAATCATGTGTT+TGG 0.525327 4_3:-54587192 None:intergenic
GGAAAAGACAAAGGAAGAGA+AGG 0.525790 4_3:-54589471 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_3:+54591814 Msa0648180:CDS
GAATTAATGTCCCAGTCGAT+CGG 0.530469 4_3:+54587999 Msa0648180:five_prime_UTR
TCGAGGAGCACGTGAGCATG+TGG 0.531179 4_3:+54587682 Msa0648180:five_prime_UTR
GTGTAAGCAGCATTGCTTGT+TGG 0.533388 4_3:-54589363 None:intergenic
AATACAAGCCTTTCACAGGA+TGG 0.535235 4_3:-54591822 None:intergenic
GTCGGAAACTACAAACTATG+AGG 0.535543 4_3:+54587644 Msa0648180:five_prime_UTR
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_3:+54589399 Msa0648180:CDS
TTCAAACTTCATCATGCACT+TGG 0.538549 4_3:+54589393 Msa0648180:CDS
GTTACAACCCAAGAACATAT+CGG 0.539028 4_3:+54587118 Msa0648180:five_prime_UTR
TCTCTTTACCTCGAGAACTA+GGG 0.542981 4_3:+54587814 Msa0648180:five_prime_UTR
CATCAAAGCAGAATAACTAA+AGG 0.543426 4_3:-54587450 None:intergenic
GTTGTCATGTCCAATTTGAT+CGG 0.545850 4_3:+54591772 Msa0648180:CDS
TCGGAAACTACAAACTATGA+GGG 0.546239 4_3:+54587645 Msa0648180:five_prime_UTR
CAAATATTATAAGCCAACAT+TGG 0.549483 4_3:-54595169 None:intergenic
GAAATATAATGAAATTGTGC+TGG 0.552134 4_3:+54588753 Msa0648180:five_prime_UTR
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_3:+54589414 Msa0648180:CDS
GAGAAATGTAGTACAAGTGA+GGG 0.559608 4_3:+54587558 Msa0648180:five_prime_UTR
TCATAAACGTGGCTCTTGAA+CGG 0.561870 4_3:-54588633 None:intergenic
AACTTAGTCCCCAAATAGGT+CGG 0.562150 4_3:+54587626 Msa0648180:five_prime_UTR
CAGGAATTAAGACTCGGGCC+TGG 0.566647 4_3:-54587332 None:intergenic
CCTATATGGAATGGTGAGGA+AGG 0.567496 4_3:+54589636 Msa0648180:CDS
AGTTCACATTCTAAACCACT+TGG 0.567838 4_3:+54595098 Msa0648180:three_prime_UTR
GATAAATCACCTATATGGAA+TGG 0.568282 4_3:+54589627 Msa0648180:CDS
AGAGGCATTAAAACTGTACA+TGG 0.568718 4_3:+54588439 Msa0648180:five_prime_UTR
AGTATTCAATGCCATTGTCT+AGG 0.569604 4_3:+54594910 Msa0648180:three_prime_UTR
TATCCTTGAAACCATTTAAG+CGG 0.571238 4_3:+54587971 Msa0648180:five_prime_UTR
CTCTTTACCTCGAGAACTAG+GGG 0.573292 4_3:+54587815 Msa0648180:five_prime_UTR
TAAATTCATGCCGATCGACT+GGG 0.573468 4_3:-54588009 None:intergenic
GTGTTGAAGTATTGTCCACT+TGG 0.573593 4_3:-54588924 None:intergenic
GTCCAATTTGATCGGGCCAG+TGG 0.573799 4_3:+54591780 Msa0648180:CDS
TTGCTAAGTACCAGGAACAT+TGG 0.575327 4_3:+54590241 Msa0648180:CDS
AAAGGGAGAATATGGTTGAA+GGG 0.579274 4_3:-54589548 None:intergenic
AAACATATGAACATAGGGGA+GGG 0.581662 4_3:-54588947 None:intergenic
AACATATGAACATAGGGGAG+GGG 0.584123 4_3:-54588946 None:intergenic
CGGGAATTAGGACCCGAACC+AGG 0.585816 4_3:+54587314 Msa0648180:five_prime_UTR
AGTCTAATACAAGAGTGTAT+CGG 0.587437 4_3:-54587151 None:intergenic
ATAGGAAAGCTGCTCAATAG+GGG 0.590262 4_3:-54587707 None:intergenic
TTGATAATACAAGACAAGAA+GGG 0.591111 4_3:+54587865 Msa0648180:five_prime_UTR
TACAAATTTAAGTACGAATG+TGG 0.592931 4_3:+54588572 Msa0648180:five_prime_UTR
TAAATTGTGATAAATGTCGC+CGG 0.593757 4_3:-54588514 None:intergenic
TATAATGTCTGGTGCACCTG+AGG 0.596961 4_3:+54591846 Msa0648180:CDS
AGGATCCAATCAAATTGTGC+TGG 0.597120 4_3:+54588798 Msa0648180:five_prime_UTR
TGATAGGTAAGAACACATGT+TGG 0.604630 4_3:-54589025 None:intergenic
TGATAACATGGATTTCCCAA+AGG 0.605124 4_3:-54589335 None:intergenic
TTGTTGGATACTTGATAACA+TGG 0.610552 4_3:-54589347 None:intergenic
GATTGGTGTTGCTAAGTACC+AGG 0.611444 4_3:+54590233 Msa0648180:CDS
TGATAATACAAGACAAGAAG+GGG 0.613226 4_3:+54587866 Msa0648180:five_prime_UTR
ATTATTCAGGAATTAAGACT+CGG 0.616267 4_3:-54587338 None:intergenic
TTATTCAGGAATTAAGACTC+GGG 0.617642 4_3:-54587337 None:intergenic
TGAGAAATGTAGTACAAGTG+AGG 0.617652 4_3:+54587557 Msa0648180:five_prime_UTR
TGTAGTTTCCGACCTATTTG+GGG 0.618935 4_3:-54587634 None:intergenic
ATAATGAAACTCCTAGACAA+TGG 0.625979 4_3:-54594921 None:intergenic
AAAAGTACGTACTATTATGG+AGG 0.629039 4_3:-54589060 None:intergenic
ATATAGGTGAGAGATAAAGA+TGG 0.633511 4_3:+54589162 Msa0648180:intron
ACTATTATGGAGGAGAAGCG+TGG 0.633661 4_3:-54589050 None:intergenic
ACAATCTATGGAGAAAGAGA+GGG 0.634533 4_3:+54594879 Msa0648180:three_prime_UTR
CTTTCCAAACAAAATCTAAG+GGG 0.635519 4_3:-54590378 None:intergenic
ACAGAAGTTCAAGTTGTGCA+TGG 0.637970 4_3:+54594788 Msa0648180:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_3:+54590471 Msa0648180:CDS
ACTGAGCCAGTAAGTCCAAG+TGG 0.642613 4_3:+54588909 Msa0648180:CDS
GATAGGTTTGATAGTGCACA+AGG 0.644206 4_3:-54589672 None:intergenic
ATCACCTATATGGAATGGTG+AGG 0.649181 4_3:+54589632 Msa0648180:CDS
CGAGGAGCACGTGAGCATGT+GGG 0.649690 4_3:+54587683 Msa0648180:five_prime_UTR
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_3:+54589719 Msa0648180:CDS
TGAATGTCACACCAGATGTG+AGG 0.650593 4_3:+54588778 Msa0648180:five_prime_UTR
GAATGGAATAGGAATGTTGG+TGG 0.651040 4_3:+54587530 Msa0648180:five_prime_UTR
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_3:+54590296 Msa0648180:CDS
TAGGAAAGCTGCTCAATAGG+GGG 0.656377 4_3:-54587706 None:intergenic
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_3:+54590295 Msa0648180:CDS
AAAACATATGAACATAGGGG+AGG 0.661494 4_3:-54588948 None:intergenic
AGGTGTTGTGAAATTCCAAG+TGG 0.663720 4_3:-54595113 None:intergenic
CAATCTATGGAGAAAGAGAG+GGG 0.669874 4_3:+54594880 Msa0648180:three_prime_UTR
TTGCGGTTAGGAAAAGACAA+AGG 0.670319 4_3:-54589480 None:intergenic
CGGAAACTACAAACTATGAG+GGG 0.671315 4_3:+54587646 Msa0648180:five_prime_UTR
CAATTGTTAACTCCTAAGAG+AGG 0.672084 4_3:+54589510 Msa0648180:CDS
GTATGGTCACACGACTGACA+TGG 0.695441 4_3:-54588552 None:intergenic
ATCAATCCAAGACATGACCA+AGG 0.700982 4_3:+54590273 Msa0648180:CDS
ATAACATGGATTTCCCAAAG+GGG 0.708600 4_3:-54589333 None:intergenic
AGAAATGTAGTACAAGTGAG+GGG 0.709035 4_3:+54587559 Msa0648180:five_prime_UTR
AATAAATGATGTGATTACTG+GGG 0.709233 4_3:+54590141 Msa0648180:CDS
TCTTTACCTCGAGAACTAGG+GGG 0.737732 4_3:+54587816 Msa0648180:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTAAAATTCAAGT+AGG + chr4_3:54588138-54588157 Msa0648180:five_prime_UTR 10.0%
!! TAAAAATTAAAATTCAAGTA+GGG + chr4_3:54588139-54588158 Msa0648180:five_prime_UTR 10.0%
!! ATTCAAGTAAAAATAAATAA+AGG - chr4_3:54588413-54588432 None:intergenic 10.0%
!! TGTTATATAAAAAATTTGTA+AGG - chr4_3:54589109-54589128 None:intergenic 10.0%
!! TTTATATACAATTTGTATAT+TGG + chr4_3:54589751-54589770 Msa0648180:intron 10.0%
!! TAATTAAAAAACTATAACTA+AGG - chr4_3:54589897-54589916 None:intergenic 10.0%
!!! TAATAAGATAATAATTTTTC+GGG + chr4_3:54590582-54590601 Msa0648180:intron 10.0%
!! AATGAATATATGAAAATTAA+AGG + chr4_3:54592178-54592197 Msa0648180:intron 10.0%
!! ATTAAATATATTAATGATCA+AGG - chr4_3:54592367-54592386 None:intergenic 10.0%
!! TTTCTTGTTAAAAAATAAAA+AGG - chr4_3:54594595-54594614 None:intergenic 10.0%
!! ATAATTCATTATTTATTGTT+TGG + chr4_3:54595005-54595024 Msa0648180:intron 10.0%
!! ATTATTCTTGAAAATACAAA+TGG - chr4_3:54587215-54587234 None:intergenic 15.0%
!! ACTATTTGTAAAAAAAACAT+AGG + chr4_3:54587484-54587503 Msa0648180:five_prime_UTR 15.0%
!! CTTATTTGATAAAAGTTAAT+AGG - chr4_3:54587728-54587747 None:intergenic 15.0%
!! AAAAAAAATCCAAAATGATT+TGG + chr4_3:54587842-54587861 Msa0648180:five_prime_UTR 15.0%
!!! AATTTCCTGTTATTTTATTT+AGG - chr4_3:54587950-54587969 None:intergenic 15.0%
!! TATACTTATTCATCTTAATT+AGG - chr4_3:54591926-54591945 None:intergenic 15.0%
!! TTCTAACTAAAAATATAGAA+TGG - chr4_3:54592281-54592300 None:intergenic 15.0%
!!! TTTTGAGTTATTTTACAAAA+GGG - chr4_3:54593160-54593179 None:intergenic 15.0%
!!! ATTTTGAGTTATTTTACAAA+AGG - chr4_3:54593161-54593180 None:intergenic 15.0%
!! AAATAACTTAGTTCAATAAA+AGG + chr4_3:54593845-54593864 Msa0648180:intron 15.0%
!! AATAACTTAGTTCAATAAAA+GGG + chr4_3:54593846-54593865 Msa0648180:intron 15.0%
!! GTACAAAATATTTAAACTAA+TGG - chr4_3:54594227-54594246 None:intergenic 15.0%
!!! TTTAGTTTCATCAATAAAAA+GGG + chr4_3:54594956-54594975 Msa0648180:three_prime_UTR 15.0%
!!! TGTATATTAATTAAGTTTTG+TGG + chr4_3:54595063-54595082 Msa0648180:intron 15.0%
!! ACTAAAATAGCTTATAAATA+AGG - chr4_3:54595136-54595155 None:intergenic 15.0%
!! TGTTTCATTAGAAATTGATT+TGG - chr4_3:54587756-54587775 None:intergenic 20.0%
!! TTACTTACCTTCAAATATTA+CGG + chr4_3:54587791-54587810 Msa0648180:five_prime_UTR 20.0%
!!! TATTATCAACCAAATCATTT+TGG - chr4_3:54587854-54587873 None:intergenic 20.0%
!!! AACTTTTGTTTTTCTATCTT+TGG - chr4_3:54588193-54588212 None:intergenic 20.0%
!! AAAAACAAAAGTTTAACAAG+AGG + chr4_3:54588200-54588219 Msa0648180:five_prime_UTR 20.0%
!!! TTTTACTTGAATGTAAAAAG+AGG + chr4_3:54588421-54588440 Msa0648180:five_prime_UTR 20.0%
!!! TTATTTTATGACAAAAGAAG+AGG + chr4_3:54588704-54588723 Msa0648180:five_prime_UTR 20.0%
!!! TTCATATGTTTTTGGATTTT+TGG + chr4_3:54588959-54588978 Msa0648180:CDS 20.0%
!!! ATAAAAAGTACGTACTATTA+TGG - chr4_3:54589066-54589085 None:intergenic 20.0%
!! ATAAAGATGGAAATATGAAA+TGG + chr4_3:54589175-54589194 Msa0648180:CDS 20.0%
!!! AAATCCAAAAGATCATTTTA+AGG + chr4_3:54589212-54589231 Msa0648180:CDS 20.0%
!! TGTCAAAGATATTAATAGAA+AGG + chr4_3:54589295-54589314 Msa0648180:CDS 20.0%
!! ATGATGAAGTTTGAATATTA+TGG - chr4_3:54589388-54589407 None:intergenic 20.0%
!!! ATATGTTCATACAATTTGTT+AGG + chr4_3:54589868-54589887 Msa0648180:intron 20.0%
!! ATATTTAAATGTGGAGAAAT+AGG + chr4_3:54589971-54589990 Msa0648180:intron 20.0%
!! TATTTAAATGTGGAGAAATA+GGG + chr4_3:54589972-54589991 Msa0648180:intron 20.0%
!!! AGTTCTAACATAATGTTTTT+TGG + chr4_3:54590108-54590127 Msa0648180:intron 20.0%
!! AAATGTATTTGCATAAAGAA+TGG + chr4_3:54591230-54591249 Msa0648180:intron 20.0%
!!! AATATTTTATCGAGTAATGT+CGG + chr4_3:54591489-54591508 Msa0648180:intron 20.0%
!! TAACGATATAGAATAGAAAT+GGG - chr4_3:54592082-54592101 None:intergenic 20.0%
!! GAATATATGAAAATTAAAGG+TGG + chr4_3:54592181-54592200 Msa0648180:intron 20.0%
!! ACGACATGTATTAAAAAAAA+TGG - chr4_3:54592247-54592266 None:intergenic 20.0%
!! ACTAAAAATATAGAATGGAA+TGG - chr4_3:54592276-54592295 None:intergenic 20.0%
!!! TAAGACAAATTTTAGTATGT+GGG - chr4_3:54592450-54592469 None:intergenic 20.0%
!!! TTAAGACAAATTTTAGTATG+TGG - chr4_3:54592451-54592470 None:intergenic 20.0%
!! TTGCAACATGTATTAAAAAA+CGG + chr4_3:54592525-54592544 Msa0648180:intron 20.0%
!! TAAATAATGTTAAACATCCA+TGG + chr4_3:54592620-54592639 Msa0648180:intron 20.0%
!! AAGTAGTAATTAATGCTAAT+TGG - chr4_3:54592866-54592885 None:intergenic 20.0%
!! CATTAATAGAAACTTTGTAT+TGG - chr4_3:54593097-54593116 None:intergenic 20.0%
!! CAATACAAAGTTTCTATTAA+TGG + chr4_3:54593095-54593114 Msa0648180:intron 20.0%
!!! AATAAATAAGAGTATGTTAG+AGG + chr4_3:54593323-54593342 Msa0648180:intron 20.0%
!!! TCAACTAACATTAATTTTTC+AGG + chr4_3:54594384-54594403 Msa0648180:intron 20.0%
!! TCAAAAGAAAACCATTTATT+AGG + chr4_3:54594466-54594485 Msa0648180:intron 20.0%
!!! CATTTCATCTTTTTTTTGTT+GGG - chr4_3:54594858-54594877 None:intergenic 20.0%
!!! TCATTTCATCTTTTTTTTGT+TGG - chr4_3:54594859-54594878 None:intergenic 20.0%
!!! GTTTAGTTTCATCAATAAAA+AGG + chr4_3:54594955-54594974 Msa0648180:three_prime_UTR 20.0%
!! TATTTATAATGTACCTCAAT+TGG + chr4_3:54595030-54595049 Msa0648180:intron 20.0%
! AATGGAATTGAGAACATATA+AGG - chr4_3:54587082-54587101 None:intergenic 25.0%
! TTCTCAATTCCATTTAATCT+TGG + chr4_3:54587088-54587107 Msa0648180:five_prime_UTR 25.0%
! ACTTCATATCCAAGATTAAA+TGG - chr4_3:54587100-54587119 None:intergenic 25.0%
!!! ATGAGTTTTGATATTGTTGT+TGG - chr4_3:54587252-54587271 None:intergenic 25.0%
!! GCAACAATTTTCTTTTTACA+GGG + chr4_3:54587280-54587299 Msa0648180:five_prime_UTR 25.0%
!! CAACAATTTTCTTTTTACAG+GGG + chr4_3:54587281-54587300 Msa0648180:five_prime_UTR 25.0%
! ATTATTCAGGAATTAAGACT+CGG - chr4_3:54587341-54587360 None:intergenic 25.0%
!! TGTCTTGTTAGGTTAAAAAA+AGG + chr4_3:54587360-54587379 Msa0648180:five_prime_UTR 25.0%
!! TTGATAATACAAGACAAGAA+GGG + chr4_3:54587865-54587884 Msa0648180:five_prime_UTR 25.0%
! TGATTCAGACAAATCATATA+CGG + chr4_3:54587891-54587910 Msa0648180:five_prime_UTR 25.0%
! AGCAACCTAAATAAAATAAC+AGG + chr4_3:54587942-54587961 Msa0648180:five_prime_UTR 25.0%
! ATTATTAACATGTGCCTTTA+GGG - chr4_3:54588258-54588277 None:intergenic 25.0%
! AATTATTAACATGTGCCTTT+AGG - chr4_3:54588259-54588278 None:intergenic 25.0%
! TGTAAGAAATTGTGCAAATT+TGG - chr4_3:54588334-54588353 None:intergenic 25.0%
!! AATGCTAATTTGTGTCTTTA+GGG - chr4_3:54588389-54588408 None:intergenic 25.0%
!! TAATGCTAATTTGTGTCTTT+AGG - chr4_3:54588390-54588409 None:intergenic 25.0%
! CATTCGTACTTAAATTTGTA+TGG - chr4_3:54588572-54588591 None:intergenic 25.0%
! TACAAATTTAAGTACGAATG+TGG + chr4_3:54588572-54588591 Msa0648180:five_prime_UTR 25.0%
! AGACTGTGTAAAACAAATAA+TGG + chr4_3:54588731-54588750 Msa0648180:five_prime_UTR 25.0%
! GAAATATAATGAAATTGTGC+TGG + chr4_3:54588753-54588772 Msa0648180:five_prime_UTR 25.0%
! TCCAAAAACATATGAACATA+GGG - chr4_3:54588955-54588974 None:intergenic 25.0%
! ATCCAAAAACATATGAACAT+AGG - chr4_3:54588956-54588975 None:intergenic 25.0%
! TTATCTCTCACCTATATAAA+TGG - chr4_3:54589159-54589178 None:intergenic 25.0%
! TATGAAATGGAAAAAAGTAG+AGG + chr4_3:54589188-54589207 Msa0648180:CDS 25.0%
!!! AATTCAACTGACTCATTTTT+GGG - chr4_3:54589249-54589268 None:intergenic 25.0%
! TTAACAATTGTGATGATTTG+CGG - chr4_3:54589500-54589519 None:intergenic 25.0%
! ATCAGAGATTGAATTGAAAA+GGG - chr4_3:54589568-54589587 None:intergenic 25.0%
! AATCAGAGATTGAATTGAAA+AGG - chr4_3:54589569-54589588 None:intergenic 25.0%
!! TTCAATTCAATCTCTGATTT+TGG + chr4_3:54589570-54589589 Msa0648180:CDS 25.0%
! AAGATGATAAATCACCTATA+TGG + chr4_3:54589622-54589641 Msa0648180:CDS 25.0%
! ACAATAAATGATGTGATTAC+TGG + chr4_3:54590139-54590158 Msa0648180:CDS 25.0%
! CAATAAATGATGTGATTACT+GGG + chr4_3:54590140-54590159 Msa0648180:CDS 25.0%
! AATAAATGATGTGATTACTG+GGG + chr4_3:54590141-54590160 Msa0648180:CDS 25.0%
!! TATGCAAGAGATTGATAATA+AGG + chr4_3:54590189-54590208 Msa0648180:CDS 25.0%
! AAGCACAAAAAATAATCAAG+AGG + chr4_3:54590398-54590417 Msa0648180:CDS 25.0%
! AAAAGTAAAGATGCTTAAAG+AGG - chr4_3:54591094-54591113 None:intergenic 25.0%
!! AAGAAAGAGTGTGTTAAAAT+AGG - chr4_3:54591520-54591539 None:intergenic 25.0%
!! AGTTGCATTCATTTTCAAAA+TGG - chr4_3:54591583-54591602 None:intergenic 25.0%
! AAATGTTAAAATCAGTGTTG+CGG + chr4_3:54591643-54591662 Msa0648180:intron 25.0%
!! AGGCTTTTTATAAATAAGAG+AGG - chr4_3:54591906-54591925 None:intergenic 25.0%
!! TATGGATGTGTATTTTATTG+TGG - chr4_3:54592010-54592029 None:intergenic 25.0%
! CTAACGATATAGAATAGAAA+TGG - chr4_3:54592083-54592102 None:intergenic 25.0%
! TAGAGAGAAATGAAGATAAA+TGG + chr4_3:54592100-54592119 Msa0648180:intron 25.0%
! AACATGTATTAAAAAACGGA+GGG + chr4_3:54592529-54592548 Msa0648180:intron 25.0%
!! GATTTATTGACAAGTGTTTT+AGG - chr4_3:54592680-54592699 None:intergenic 25.0%
! TTAGCATGATTCTTCAAAAA+TGG + chr4_3:54592736-54592755 Msa0648180:intron 25.0%
! AAGCGAATTATAATTTAGGA+CGG - chr4_3:54592803-54592822 None:intergenic 25.0%
! TCCTAAATTATAATTCGCTT+TGG + chr4_3:54592803-54592822 Msa0648180:intron 25.0%
! TCCAAAGCGAATTATAATTT+AGG - chr4_3:54592807-54592826 None:intergenic 25.0%
! AAAACTCGCTAAAAACAAAA+AGG + chr4_3:54593533-54593552 Msa0648180:intron 25.0%
! TTAAATCTAGTCATATGTGT+AGG - chr4_3:54593621-54593640 None:intergenic 25.0%
! AAATAGAAAAACGAGTTAGA+GGG + chr4_3:54593869-54593888 Msa0648180:intron 25.0%
!!! TGTGATTTTAGAAGTTGTTA+TGG - chr4_3:54594299-54594318 None:intergenic 25.0%
!!! CTTCTAAAATCACATATGAA+TGG + chr4_3:54594305-54594324 Msa0648180:intron 25.0%
! GATTACGTATTCCTAATAAA+TGG - chr4_3:54594480-54594499 None:intergenic 25.0%
! TTATTAGGAATACGTAATCA+AGG + chr4_3:54594481-54594500 Msa0648180:intron 25.0%
! TATTAGGAATACGTAATCAA+GGG + chr4_3:54594482-54594501 Msa0648180:intron 25.0%
!! TAACAATTCTCATATTGGTT+AGG + chr4_3:54594506-54594525 Msa0648180:intron 25.0%
! ACTTCAAAACTACTAACAAT+TGG - chr4_3:54594571-54594590 None:intergenic 25.0%
! AAGATGAAATGAACAATCTA+TGG + chr4_3:54594867-54594886 Msa0648180:exon 25.0%
! CAAATATTATAAGCCAACAT+TGG - chr4_3:54595172-54595191 None:intergenic 25.0%
! AGTCTAATACAAGAGTGTAT+CGG - chr4_3:54587154-54587173 None:intergenic 30.0%
! CGCAACAATTTTCTTTTTAC+AGG + chr4_3:54587279-54587298 Msa0648180:five_prime_UTR 30.0%
TTATTCAGGAATTAAGACTC+GGG - chr4_3:54587340-54587359 None:intergenic 30.0%
! TTCCTGAATAATGTCTTGTT+AGG + chr4_3:54587349-54587368 Msa0648180:five_prime_UTR 30.0%
AACCTAACAAGACATTATTC+AGG - chr4_3:54587354-54587373 None:intergenic 30.0%
AGGTAAATCAACATTGTAAC+CGG + chr4_3:54587380-54587399 Msa0648180:five_prime_UTR 30.0%
ATGCATTGCTTCTTATAAAC+CGG - chr4_3:54587402-54587421 None:intergenic 30.0%
CATCAAAGCAGAATAACTAA+AGG - chr4_3:54587453-54587472 None:intergenic 30.0%
AAAGAGACCGTAATATTTGA+AGG - chr4_3:54587801-54587820 None:intergenic 30.0%
!! GTTGATAATACAAGACAAGA+AGG + chr4_3:54587864-54587883 Msa0648180:five_prime_UTR 30.0%
TGATAATACAAGACAAGAAG+GGG + chr4_3:54587866-54587885 Msa0648180:five_prime_UTR 30.0%
! GTATATGATTTGTCTGAATC+AGG - chr4_3:54587892-54587911 None:intergenic 30.0%
TATCCTTGAAACCATTTAAG+CGG + chr4_3:54587971-54587990 Msa0648180:five_prime_UTR 30.0%
! CTGTACATGGTGTAAATTTT+TGG + chr4_3:54588452-54588471 Msa0648180:five_prime_UTR 30.0%
!!! TGTAAATTTTTGGTTGAAGC+AGG + chr4_3:54588462-54588481 Msa0648180:five_prime_UTR 30.0%
! ATCATTTTCGTACATATTGC+CGG + chr4_3:54588495-54588514 Msa0648180:five_prime_UTR 30.0%
TAAATTGTGATAAATGTCGC+CGG - chr4_3:54588517-54588536 None:intergenic 30.0%
! TTTCCTTTTGATCATAAACG+TGG - chr4_3:54588647-54588666 None:intergenic 30.0%
! TGCACTTGTATTTTCAATGT+TGG - chr4_3:54588848-54588867 None:intergenic 30.0%
AGTGCATAGATCATAATCAA+TGG + chr4_3:54588869-54588888 Msa0648180:exon 30.0%
CCAAAAACATATGAACATAG+GGG - chr4_3:54588954-54588973 None:intergenic 30.0%
! AAAAGTACGTACTATTATGG+AGG - chr4_3:54589063-54589082 None:intergenic 30.0%
ATGCATGCAACCATTTATAT+AGG + chr4_3:54589146-54589165 Msa0648180:intron 30.0%
ATATAGGTGAGAGATAAAGA+TGG + chr4_3:54589162-54589181 Msa0648180:intron 30.0%
! GGAACCTTAAAATGATCTTT+TGG - chr4_3:54589219-54589238 None:intergenic 30.0%
!! ATTCAACTGACTCATTTTTG+GGG - chr4_3:54589248-54589267 None:intergenic 30.0%
!! GAATTCAACTGACTCATTTT+TGG - chr4_3:54589250-54589269 None:intergenic 30.0%
! TTGTTGGATACTTGATAACA+TGG - chr4_3:54589350-54589369 None:intergenic 30.0%
TGAATTGAAAAGGGAGAATA+TGG - chr4_3:54589559-54589578 None:intergenic 30.0%
! ATTCAATCTCTGATTTTGGA+TGG + chr4_3:54589574-54589593 Msa0648180:CDS 30.0%
GATAAATCACCTATATGGAA+TGG + chr4_3:54589627-54589646 Msa0648180:CDS 30.0%
ATAACAATCAAGTCTAAGCT+TGG + chr4_3:54589714-54589733 Msa0648180:CDS 30.0%
! TTTTTGATCAAATAGCCTAG+TGG + chr4_3:54589937-54589956 Msa0648180:intron 30.0%
GGAGGTCATATATTTAAATG+TGG + chr4_3:54589962-54589981 Msa0648180:intron 30.0%
! ATTACTGGGGTAATTTTCTA+TGG + chr4_3:54590154-54590173 Msa0648180:CDS 30.0%
! GGGTAATTTTCTATGGTATT+AGG + chr4_3:54590161-54590180 Msa0648180:CDS 30.0%
AATGTCAAATTCAACAGGAT+TGG + chr4_3:54590216-54590235 Msa0648180:CDS 30.0%
CTTTCCAAACAAAATCTAAG+GGG - chr4_3:54590381-54590400 None:intergenic 30.0%
GCTTTCCAAACAAAATCTAA+GGG - chr4_3:54590382-54590401 None:intergenic 30.0%
TGCTTTCCAAACAAAATCTA+AGG - chr4_3:54590383-54590402 None:intergenic 30.0%
!!! TGACTTTTGAAGTACAGTAA+AGG - chr4_3:54590726-54590745 None:intergenic 30.0%
TTATACTGTACATACCAAAC+AGG - chr4_3:54590836-54590855 None:intergenic 30.0%
!!! TCAAGAACTTTTGACTTGTT+TGG - chr4_3:54590977-54590996 None:intergenic 30.0%
TGTACATCCTGAGTAATTTA+GGG + chr4_3:54591057-54591076 Msa0648180:intron 30.0%
TTGAATTGTGAACAAAGAGA+TGG + chr4_3:54591158-54591177 Msa0648180:intron 30.0%
AAAGATGGTGAGTAAAACAT+TGG + chr4_3:54591315-54591334 Msa0648180:intron 30.0%
! AATAGATTTTTACGAGTGTG+TGG + chr4_3:54591401-54591420 Msa0648180:intron 30.0%
AACACACTCTTTCTTATACT+CGG + chr4_3:54591525-54591544 Msa0648180:intron 30.0%
AGCTATAAAATATGTGTTGC+AGG + chr4_3:54591708-54591727 Msa0648180:intron 30.0%
ATAAAATACAAGCCTTTCAC+AGG - chr4_3:54591829-54591848 None:intergenic 30.0%
! GGCTTGTATTTTATAATGTC+TGG + chr4_3:54591835-54591854 Msa0648180:CDS 30.0%
TACACATCCATAAGTATAGT+AGG + chr4_3:54592018-54592037 Msa0648180:intron 30.0%
TTGAACTCCTACTATACTTA+TGG - chr4_3:54592028-54592047 None:intergenic 30.0%
CAACATGTATTAAAAAACGG+AGG + chr4_3:54592528-54592547 Msa0648180:intron 30.0%
TCTTGACAGCTCATAATAAA+AGG + chr4_3:54592584-54592603 Msa0648180:intron 30.0%
CCACACAATTATATTATCCA+TGG - chr4_3:54592640-54592659 None:intergenic 30.0%
CCATGGATAATATAATTGTG+TGG + chr4_3:54592637-54592656 Msa0648180:intron 30.0%
AACCTAAATGCGAAACTTAA+TGG - chr4_3:54592717-54592736 None:intergenic 30.0%
!! GTTAGTTGTGTTGATTTCAA+TGG + chr4_3:54592758-54592777 Msa0648180:intron 30.0%
ATTCTTAATCATTGCCCTTA+AGG + chr4_3:54593119-54593138 Msa0648180:intron 30.0%
ATTTCTCAATTTGTGCGAAA+TGG + chr4_3:54593207-54593226 Msa0648180:intron 30.0%
GTCCAAACGATCTATAATTT+GGG + chr4_3:54593229-54593248 Msa0648180:intron 30.0%
AAACGATCTATAATTTGGGA+CGG + chr4_3:54593233-54593252 Msa0648180:intron 30.0%
TATGACTAGATTTAAGTCTC+CGG + chr4_3:54593626-54593645 Msa0648180:intron 30.0%
TGTATTTGTTCGATTCAGAT+TGG - chr4_3:54593731-54593750 None:intergenic 30.0%
GAAATAGAAAAACGAGTTAG+AGG + chr4_3:54593868-54593887 Msa0648180:intron 30.0%
AATAGAAAAACGAGTTAGAG+GGG + chr4_3:54593870-54593889 Msa0648180:intron 30.0%
! AGGAGAAGAAACTAGAATTT+TGG + chr4_3:54593942-54593961 Msa0648180:intron 30.0%
!! ATTTGCTATAGCACTTGTTA+AGG - chr4_3:54594115-54594134 None:intergenic 30.0%
AGGGATAACAATTCTCATAT+TGG + chr4_3:54594501-54594520 Msa0648180:intron 30.0%
! AATTCTCATATTGGTTAGGA+TGG + chr4_3:54594510-54594529 Msa0648180:intron 30.0%
TCACAAAGAATAGCATGTTA+TGG - chr4_3:54594685-54594704 None:intergenic 30.0%
! TGCTTTGGATATGATTTCAA+AGG - chr4_3:54594820-54594839 None:intergenic 30.0%
ATAATGAAACTCCTAGACAA+TGG - chr4_3:54594924-54594943 None:intergenic 30.0%
TTATAATGTACCTCAATTGG+AGG + chr4_3:54595033-54595052 Msa0648180:intron 30.0%
!! TAAGTTTTGTGGACTAAGTT+TGG + chr4_3:54595074-54595093 Msa0648180:three_prime_UTR 30.0%
! CTCACAATTTTATCCAATGT+TGG + chr4_3:54595156-54595175 Msa0648180:three_prime_UTR 30.0%
GTTACAACCCAAGAACATAT+CGG + chr4_3:54587118-54587137 Msa0648180:five_prime_UTR 35.0%
CTAACTACCGATATGTTCTT+GGG - chr4_3:54587128-54587147 None:intergenic 35.0%
TCTAACTACCGATATGTTCT+TGG - chr4_3:54587129-54587148 None:intergenic 35.0%
TGGTTGTTGAATCATGTGTT+TGG - chr4_3:54587195-54587214 None:intergenic 35.0%
! TTCTTTTTACAGGGGATGAA+TGG + chr4_3:54587289-54587308 Msa0648180:five_prime_UTR 35.0%
CAAACTTGGATGAATGGAAT+AGG + chr4_3:54587519-54587538 Msa0648180:five_prime_UTR 35.0%
GATGAATGGAATAGGAATGT+TGG + chr4_3:54587527-54587546 Msa0648180:five_prime_UTR 35.0%
TGAGAAATGTAGTACAAGTG+AGG + chr4_3:54587557-54587576 Msa0648180:five_prime_UTR 35.0%
GAGAAATGTAGTACAAGTGA+GGG + chr4_3:54587558-54587577 Msa0648180:five_prime_UTR 35.0%
AGAAATGTAGTACAAGTGAG+GGG + chr4_3:54587559-54587578 Msa0648180:five_prime_UTR 35.0%
TGAAAACTTAGTCCCCAAAT+AGG + chr4_3:54587622-54587641 Msa0648180:five_prime_UTR 35.0%
TTGTAGTTTCCGACCTATTT+GGG - chr4_3:54587638-54587657 None:intergenic 35.0%
TTTGTAGTTTCCGACCTATT+TGG - chr4_3:54587639-54587658 None:intergenic 35.0%
TCGGAAACTACAAACTATGA+GGG + chr4_3:54587645-54587664 Msa0648180:five_prime_UTR 35.0%
AATAGGAAAGCTGCTCAATA+GGG - chr4_3:54587711-54587730 None:intergenic 35.0%
TAATAGGAAAGCTGCTCAAT+AGG - chr4_3:54587712-54587731 None:intergenic 35.0%
!!! TGTCTTTAGGGCACATTTTA+AGG - chr4_3:54588377-54588396 None:intergenic 35.0%
!! AGAGGCATTAAAACTGTACA+TGG + chr4_3:54588439-54588458 Msa0648180:five_prime_UTR 35.0%
! GTATTTTCAATGTTGGCACT+GGG - chr4_3:54588841-54588860 None:intergenic 35.0%
! TGTATTTTCAATGTTGGCAC+TGG - chr4_3:54588842-54588861 None:intergenic 35.0%
AAACATATGAACATAGGGGA+GGG - chr4_3:54588950-54588969 None:intergenic 35.0%
AAAACATATGAACATAGGGG+AGG - chr4_3:54588951-54588970 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+TGG + chr4_3:54588951-54588970 Msa0648180:CDS 35.0%
ATAGCTTGAGAGTCATCAAT+TGG - chr4_3:54588996-54589015 None:intergenic 35.0%
TGATAGGTAAGAACACATGT+TGG - chr4_3:54589028-54589047 None:intergenic 35.0%
ATAACATGGATTTCCCAAAG+GGG - chr4_3:54589336-54589355 None:intergenic 35.0%
GATAACATGGATTTCCCAAA+GGG - chr4_3:54589337-54589356 None:intergenic 35.0%
TGATAACATGGATTTCCCAA+AGG - chr4_3:54589338-54589357 None:intergenic 35.0%
TTCAAACTTCATCATGCACT+TGG + chr4_3:54589393-54589412 Msa0648180:CDS 35.0%
! AATTGTGATGATTTGCGGTT+AGG - chr4_3:54589495-54589514 None:intergenic 35.0%
CAATTGTTAACTCCTAAGAG+AGG + chr4_3:54589510-54589529 Msa0648180:CDS 35.0%
AAAGGGAGAATATGGTTGAA+GGG - chr4_3:54589551-54589570 None:intergenic 35.0%
AAAAGGGAGAATATGGTTGA+AGG - chr4_3:54589552-54589571 None:intergenic 35.0%
TTTCATCGAGAGAGAATGAT+AGG - chr4_3:54589692-54589711 None:intergenic 35.0%
GCAAGAATGTCAAATTCAAC+AGG + chr4_3:54590211-54590230 Msa0648180:CDS 35.0%
AAAGAAATATGATTCCCCCA+AGG - chr4_3:54590313-54590332 None:intergenic 35.0%
CAAAATCTAAGGGGTTAGAT+AGG - chr4_3:54590372-54590391 None:intergenic 35.0%
! CTAACCCCTTAGATTTTGTT+TGG + chr4_3:54590374-54590393 Msa0648180:CDS 35.0%
!! TCACTGTTTTTCTCACTGAA+TGG + chr4_3:54590434-54590453 Msa0648180:CDS 35.0%
GATATGCAGCTGAAATTAAG+AGG + chr4_3:54590463-54590482 Msa0648180:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG + chr4_3:54590475-54590494 Msa0648180:intron 35.0%
GTACAGTAAAGGTAAACAAG+AGG - chr4_3:54590715-54590734 None:intergenic 35.0%
ACTACTGTGTTCATATGCAT+TGG - chr4_3:54590756-54590775 None:intergenic 35.0%
GTGTACATCCTGAGTAATTT+AGG + chr4_3:54591056-54591075 Msa0648180:intron 35.0%
!! TTTCTAGAGCAATTCTTGTG+TGG - chr4_3:54591454-54591473 None:intergenic 35.0%
GCAGTTGCTAAACATCTATA+TGG + chr4_3:54591730-54591749 Msa0648180:CDS 35.0%
GTTGTCATGTCCAATTTGAT+CGG + chr4_3:54591772-54591791 Msa0648180:CDS 35.0%
TTGTCATGTCCAATTTGATC+GGG + chr4_3:54591773-54591792 Msa0648180:CDS 35.0%
! AAAAGATGATGGTTTACCTC+AGG - chr4_3:54591865-54591884 None:intergenic 35.0%
! AAACCATCATCTTTTCTCTC+TGG + chr4_3:54591870-54591889 Msa0648180:intron 35.0%
AAACCAGAGAGAAAAGATGA+TGG - chr4_3:54591876-54591895 None:intergenic 35.0%
! ATGCATTGACATGTTTGAAG+TGG - chr4_3:54592342-54592361 None:intergenic 35.0%
CTCCATTAAGTTTCGCATTT+AGG + chr4_3:54592712-54592731 Msa0648180:intron 35.0%
GGTCCAAACGATCTATAATT+TGG + chr4_3:54593228-54593247 Msa0648180:intron 35.0%
GTCCCAAATTATAGATCGTT+TGG - chr4_3:54593234-54593253 None:intergenic 35.0%
ACACTAATTATGAGAGAGAG+AGG + chr4_3:54593416-54593435 Msa0648180:intron 35.0%
GCAGATCAAATCAATGACTT+TGG - chr4_3:54593688-54593707 None:intergenic 35.0%
AAATCACATATGAATGGTCG+TGG + chr4_3:54594311-54594330 Msa0648180:intron 35.0%
AACAATCTATGGAGAAAGAG+AGG + chr4_3:54594878-54594897 Msa0648180:exon 35.0%
ACAATCTATGGAGAAAGAGA+GGG + chr4_3:54594879-54594898 Msa0648180:three_prime_UTR 35.0%
AGTATTCAATGCCATTGTCT+AGG + chr4_3:54594910-54594929 Msa0648180:three_prime_UTR 35.0%
AGTTCACATTCTAAACCACT+TGG + chr4_3:54595098-54595117 Msa0648180:three_prime_UTR 35.0%
TTTACAGGGGATGAATGGTT+CGG + chr4_3:54587294-54587313 Msa0648180:five_prime_UTR 40.0%
GAATGGAATAGGAATGTTGG+TGG + chr4_3:54587530-54587549 Msa0648180:five_prime_UTR 40.0%
AACTTAGTCCCCAAATAGGT+CGG + chr4_3:54587626-54587645 Msa0648180:five_prime_UTR 40.0%
TGTAGTTTCCGACCTATTTG+GGG - chr4_3:54587637-54587656 None:intergenic 40.0%
GTCGGAAACTACAAACTATG+AGG + chr4_3:54587644-54587663 Msa0648180:five_prime_UTR 40.0%
CGGAAACTACAAACTATGAG+GGG + chr4_3:54587646-54587665 Msa0648180:five_prime_UTR 40.0%
! CAAACTATGAGGGGCTTTTA+TGG + chr4_3:54587655-54587674 Msa0648180:five_prime_UTR 40.0%
ATAGGAAAGCTGCTCAATAG+GGG - chr4_3:54587710-54587729 None:intergenic 40.0%
TCTCTTTACCTCGAGAACTA+GGG + chr4_3:54587814-54587833 Msa0648180:five_prime_UTR 40.0%
! TAATTCGAGCACCGCTTAAA+TGG - chr4_3:54587985-54588004 None:intergenic 40.0%
GAATTAATGTCCCAGTCGAT+CGG + chr4_3:54587999-54588018 Msa0648180:five_prime_UTR 40.0%
TAAATTCATGCCGATCGACT+GGG - chr4_3:54588012-54588031 None:intergenic 40.0%
ATAAATTCATGCCGATCGAC+TGG - chr4_3:54588013-54588032 None:intergenic 40.0%
TCATAAACGTGGCTCTTGAA+CGG - chr4_3:54588636-54588655 None:intergenic 40.0%
GAGCCACGTTTATGATCAAA+AGG + chr4_3:54588641-54588660 Msa0648180:five_prime_UTR 40.0%
TTTGATTGGATCCTCACATC+TGG - chr4_3:54588792-54588811 None:intergenic 40.0%
AGGATCCAATCAAATTGTGC+TGG + chr4_3:54588798-54588817 Msa0648180:five_prime_UTR 40.0%
TATTGTCCACTTGGACTTAC+TGG - chr4_3:54588918-54588937 None:intergenic 40.0%
!! GTGTTGAAGTATTGTCCACT+TGG - chr4_3:54588927-54588946 None:intergenic 40.0%
AACATATGAACATAGGGGAG+GGG - chr4_3:54588949-54588968 None:intergenic 40.0%
!! GACTCATTTTTGGGGAACAT+TGG - chr4_3:54589240-54589259 None:intergenic 40.0%
ACCAAAAGACAAACCCCTTT+GGG + chr4_3:54589320-54589339 Msa0648180:CDS 40.0%
GGAAAAGACAAAGGAAGAGA+AGG - chr4_3:54589474-54589493 None:intergenic 40.0%
TTGCGGTTAGGAAAAGACAA+AGG - chr4_3:54589483-54589502 None:intergenic 40.0%
CACTTGAAAAAGCCTCTCTT+AGG - chr4_3:54589525-54589544 None:intergenic 40.0%
!!! CTAAGAGAGGCTTTTTCAAG+TGG + chr4_3:54589523-54589542 Msa0648180:CDS 40.0%
ATCACCTATATGGAATGGTG+AGG + chr4_3:54589632-54589651 Msa0648180:CDS 40.0%
!! GATAGGTTTGATAGTGCACA+AGG - chr4_3:54589675-54589694 None:intergenic 40.0%
AATCAAGTCTAAGCTTGGAG+TGG + chr4_3:54589719-54589738 Msa0648180:CDS 40.0%
ACATTGCATCATACACACAG+AGG - chr4_3:54590019-54590038 None:intergenic 40.0%
TTGCTAAGTACCAGGAACAT+TGG + chr4_3:54590241-54590260 Msa0648180:CDS 40.0%
! TTGGTAACTTCCAATGTTCC+TGG - chr4_3:54590254-54590273 None:intergenic 40.0%
TGGTCATGTCTTGGATTGAT+TGG - chr4_3:54590273-54590292 None:intergenic 40.0%
ATCAATCCAAGACATGACCA+AGG + chr4_3:54590273-54590292 Msa0648180:CDS 40.0%
! AGGAGATTTTGAATCAGCCT+TGG - chr4_3:54590293-54590312 None:intergenic 40.0%
! AGGCTGATTCAAAATCTCCT+TGG + chr4_3:54590293-54590312 Msa0648180:CDS 40.0%
! GGCTGATTCAAAATCTCCTT+GGG + chr4_3:54590294-54590313 Msa0648180:CDS 40.0%
! GCTGATTCAAAATCTCCTTG+GGG + chr4_3:54590295-54590314 Msa0648180:CDS 40.0%
CTGATTCAAAATCTCCTTGG+GGG + chr4_3:54590296-54590315 Msa0648180:CDS 40.0%
GCTGAAATTAAGAGGACATG+AGG + chr4_3:54590471-54590490 Msa0648180:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG + chr4_3:54590474-54590493 Msa0648180:intron 40.0%
CGTTGCAACGTAATTCTAAG+AGG + chr4_3:54590802-54590821 Msa0648180:intron 40.0%
! AAGAGGCTAATTTGCCTGTT+TGG + chr4_3:54590819-54590838 Msa0648180:intron 40.0%
TCAGGATGTACACATCTGAA+GGG - chr4_3:54591049-54591068 None:intergenic 40.0%
ACATCCTGAGTAATTTAGGG+TGG + chr4_3:54591060-54591079 Msa0648180:intron 40.0%
! CATCCTGAGTAATTTAGGGT+GGG + chr4_3:54591061-54591080 Msa0648180:intron 40.0%
TTTCCCACCCTAAATTACTC+AGG - chr4_3:54591067-54591086 None:intergenic 40.0%
AATACAAGCCTTTCACAGGA+TGG - chr4_3:54591825-54591844 None:intergenic 40.0%
!! ATCTTTTCTCTCTGGTTTGC+TGG + chr4_3:54591878-54591897 Msa0648180:intron 40.0%
GGAGTTCAAGAGTAAGTTTC+TGG + chr4_3:54592039-54592058 Msa0648180:intron 40.0%
TACTTTAACCAATGCCCCAA+GGG - chr4_3:54593005-54593024 None:intergenic 40.0%
!! GTCATTGATTTGATCTGCAC+TGG + chr4_3:54593690-54593709 Msa0648180:intron 40.0%
!! ACAGAAGTTCAAGTTGTGCA+TGG + chr4_3:54594788-54594807 Msa0648180:CDS 40.0%
CATATCCAAAGCAGCATCAA+TGG + chr4_3:54594827-54594846 Msa0648180:CDS 40.0%
! AATCTCCATTGATGCTGCTT+TGG - chr4_3:54594835-54594854 None:intergenic 40.0%
CAATCTATGGAGAAAGAGAG+GGG + chr4_3:54594880-54594899 Msa0648180:three_prime_UTR 40.0%
ACATGACATTCCTCCAATTG+AGG - chr4_3:54595046-54595065 None:intergenic 40.0%
! AGGTGTTGTGAAATTCCAAG+TGG - chr4_3:54595116-54595135 None:intergenic 40.0%
TTACAGGGGATGAATGGTTC+GGG + chr4_3:54587295-54587314 Msa0648180:five_prime_UTR 45.0%
! GGATGAATGGTTCGGGAATT+AGG + chr4_3:54587302-54587321 Msa0648180:five_prime_UTR 45.0%
CGTGAGCAAACTTGGATGAA+TGG + chr4_3:54587513-54587532 Msa0648180:five_prime_UTR 45.0%
! TAGTACAAGTGAGGGGCTTT+TGG + chr4_3:54587566-54587585 Msa0648180:five_prime_UTR 45.0%
! GGGACTAAGTTTTCATCGCT+CGG - chr4_3:54587617-54587636 None:intergenic 45.0%
TAGGAAAGCTGCTCAATAGG+GGG - chr4_3:54587709-54587728 None:intergenic 45.0%
GTCTCTTTACCTCGAGAACT+AGG + chr4_3:54587813-54587832 Msa0648180:five_prime_UTR 45.0%
CTCTTTACCTCGAGAACTAG+GGG + chr4_3:54587815-54587834 Msa0648180:five_prime_UTR 45.0%
TCTTTACCTCGAGAACTAGG+GGG + chr4_3:54587816-54587835 Msa0648180:five_prime_UTR 45.0%
!! TTTTTACCCCCTAGTTCTCG+AGG - chr4_3:54587825-54587844 None:intergenic 45.0%
GCACCGCTTAAATGGTTTCA+AGG - chr4_3:54587977-54587996 None:intergenic 45.0%
! CAGACTAACTTGTGCCCTAA+AGG + chr4_3:54588241-54588260 Msa0648180:five_prime_UTR 45.0%
CATAAACGTGGCTCTTGAAC+GGG - chr4_3:54588635-54588654 None:intergenic 45.0%
TGAATGTCACACCAGATGTG+AGG + chr4_3:54588778-54588797 Msa0648180:five_prime_UTR 45.0%
GCATGCCAGCACAATTTGAT+TGG - chr4_3:54588806-54588825 None:intergenic 45.0%
ACTATTATGGAGGAGAAGCG+TGG - chr4_3:54589053-54589072 None:intergenic 45.0%
CACCAAAAGACAAACCCCTT+TGG + chr4_3:54589319-54589338 Msa0648180:CDS 45.0%
! TCCCAAAGGGGTTTGTCTTT+TGG - chr4_3:54589324-54589343 None:intergenic 45.0%
GTGTAAGCAGCATTGCTTGT+TGG - chr4_3:54589366-54589385 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG + chr4_3:54589399-54589418 Msa0648180:CDS 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG + chr4_3:54589413-54589432 Msa0648180:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG + chr4_3:54589414-54589433 Msa0648180:CDS 45.0%
CCTTCCTCACCATTCCATAT+AGG - chr4_3:54589639-54589658 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG + chr4_3:54589636-54589655 Msa0648180:CDS 45.0%
TCGACATAATGTCCCTACCA+CGG + chr4_3:54589812-54589831 Msa0648180:intron 45.0%
GATCCTCTACCGCTATAGTA+GGG - chr4_3:54589843-54589862 None:intergenic 45.0%
AGATCCTCTACCGCTATAGT+AGG - chr4_3:54589844-54589863 None:intergenic 45.0%
TGATCAAATAGCCTAGTGGC+TGG + chr4_3:54589941-54589960 Msa0648180:intron 45.0%
ATATATGACCTCCAGCCACT+AGG - chr4_3:54589955-54589974 None:intergenic 45.0%
TGCATCATACACACAGAGGT+CGG - chr4_3:54590015-54590034 None:intergenic 45.0%
!! GATTGGTGTTGCTAAGTACC+AGG + chr4_3:54590233-54590252 Msa0648180:CDS 45.0%
AATCAGCCTTGGTCATGTCT+TGG - chr4_3:54590282-54590301 None:intergenic 45.0%
!! GCTTGGCTTAACTTTGGGAT+TGG - chr4_3:54590346-54590365 None:intergenic 45.0%
ATCTAAGGGGTTAGATAGGC+TGG - chr4_3:54590368-54590387 None:intergenic 45.0%
CTCAGGATGTACACATCTGA+AGG - chr4_3:54591050-54591069 None:intergenic 45.0%
GCAATTCTTGTGTGGAGACA+AGG - chr4_3:54591446-54591465 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG + chr4_3:54591814-54591833 Msa0648180:CDS 45.0%
TATAATGTCTGGTGCACCTG+AGG + chr4_3:54591846-54591865 Msa0648180:CDS 45.0%
AGAATGCTAACCATTGCCCT+TGG + chr4_3:54592986-54593005 Msa0648180:intron 45.0%
GAATGCTAACCATTGCCCTT+GGG + chr4_3:54592987-54593006 Msa0648180:intron 45.0%
AATGCTAACCATTGCCCTTG+GGG + chr4_3:54592988-54593007 Msa0648180:intron 45.0%
GTACTTTAACCAATGCCCCA+AGG - chr4_3:54593006-54593025 None:intergenic 45.0%
CTTGCTAAGCAGTGCCTTAA+GGG - chr4_3:54593136-54593155 None:intergenic 45.0%
TCTTGCTAAGCAGTGCCTTA+AGG - chr4_3:54593137-54593156 None:intergenic 45.0%
! ACGAGTTAGAGGGGTGATTT+TGG + chr4_3:54593879-54593898 Msa0648180:intron 45.0%
! CGAGTTAGAGGGGTGATTTT+GGG + chr4_3:54593880-54593899 Msa0648180:intron 45.0%
CACCAACTAGGGGTGATTTA+GGG - chr4_3:54593917-54593936 None:intergenic 45.0%
TCTCCTTCATCCACCAACTA+GGG - chr4_3:54593928-54593947 None:intergenic 45.0%
TTCTCCTTCATCCACCAACT+AGG - chr4_3:54593929-54593948 None:intergenic 45.0%
GTGATGACTCACAAGAGAGA+AGG + chr4_3:54593964-54593983 Msa0648180:intron 45.0%
!!! ATAATAAGATAATAATTTTT+CGG + chr4_3:54590581-54590600 Msa0648180:intron 5.0%
!!! TTTAATTTTTTTAAAAAAGA+TGG + chr4_3:54591300-54591319 Msa0648180:intron 5.0%
!! AATAAATAATACATAATTAA+GGG - chr4_3:54592898-54592917 None:intergenic 5.0%
!! TAATAAATAATACATAATTA+AGG - chr4_3:54592899-54592918 None:intergenic 5.0%
!!! AATAAAGAATAATTTTTTAA+AGG + chr4_3:54592963-54592982 Msa0648180:intron 5.0%
!! TAATCTTAATAATAAAATTA+AGG - chr4_3:54594186-54594205 None:intergenic 5.0%
ATTAAGACTCGGGCCTGGTT+CGG - chr4_3:54587330-54587349 None:intergenic 50.0%
! ACAAGTGAGGGGCTTTTGGA+TGG + chr4_3:54587570-54587589 Msa0648180:five_prime_UTR 50.0%
! CAAGTGAGGGGCTTTTGGAT+GGG + chr4_3:54587571-54587590 Msa0648180:five_prime_UTR 50.0%
! GGGGCTTTTATGGAAACTCG+AGG + chr4_3:54587665-54587684 Msa0648180:five_prime_UTR 50.0%
GTATGGTCACACGACTGACA+TGG - chr4_3:54588555-54588574 None:intergenic 50.0%
ACTGAGCCAGTAAGTCCAAG+TGG + chr4_3:54588909-54588928 Msa0648180:CDS 50.0%
! GAGGAGAAGCGTGGATTGAT+AGG - chr4_3:54589044-54589063 None:intergenic 50.0%
GATCCTCTAGCACTGCAGTA+TGG + chr4_3:54589776-54589795 Msa0648180:intron 50.0%
ACACCATACTGCAGTGCTAG+AGG - chr4_3:54589782-54589801 None:intergenic 50.0%
ACGGCAACACCCTACTATAG+CGG + chr4_3:54589831-54589850 Msa0648180:intron 50.0%
ACACCCTACTATAGCGGTAG+AGG + chr4_3:54589837-54589856 Msa0648180:intron 50.0%
TCAAATAGCCTAGTGGCTGG+AGG + chr4_3:54589944-54589963 Msa0648180:intron 50.0%
! GTGGAGAAATAGGGTGTTCG+AGG + chr4_3:54589981-54590000 Msa0648180:intron 50.0%
CATCATACACACAGAGGTCG+GGG - chr4_3:54590013-54590032 None:intergenic 50.0%
GCATCATACACACAGAGGTC+GGG - chr4_3:54590014-54590033 None:intergenic 50.0%
!! GGCTGGCTTGGCTTAACTTT+GGG - chr4_3:54590351-54590370 None:intergenic 50.0%
!! AGGCTGGCTTGGCTTAACTT+TGG - chr4_3:54590352-54590371 None:intergenic 50.0%
TTCCACTGGCCCGATCAAAT+TGG - chr4_3:54591785-54591804 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG - chr4_3:54591808-54591827 None:intergenic 50.0%
ATCCGGAGACATGGGTATTC+CGG - chr4_3:54593648-54593667 None:intergenic 50.0%
AGTCGTCAACGTTGCAGATC+CGG - chr4_3:54593665-54593684 None:intergenic 50.0%
GACCCTAAATCACCCCTAGT+TGG + chr4_3:54593912-54593931 Msa0648180:intron 50.0%
CCACCAACTAGGGGTGATTT+AGG - chr4_3:54593918-54593937 None:intergenic 50.0%
CCTAAATCACCCCTAGTTGG+TGG + chr4_3:54593915-54593934 Msa0648180:intron 50.0%
CTCCTTCATCCACCAACTAG+GGG - chr4_3:54593927-54593946 None:intergenic 50.0%
TATGAATGGTCGTGGACTCG+TGG + chr4_3:54594319-54594338 Msa0648180:intron 50.0%
TTAAGACTCGGGCCTGGTTC+GGG - chr4_3:54587329-54587348 None:intergenic 55.0%
CAGGAATTAAGACTCGGGCC+TGG - chr4_3:54587335-54587354 None:intergenic 55.0%
GGTGAGCACGTGAGCAAACT+TGG + chr4_3:54587505-54587524 Msa0648180:five_prime_UTR 55.0%
! TGAGGGGCTTTTGGATGGGT+CGG + chr4_3:54587575-54587594 Msa0648180:five_prime_UTR 55.0%
!! AGTAGGGTGTTGCCGTGGTA+GGG - chr4_3:54589827-54589846 None:intergenic 55.0%
!! TAGTAGGGTGTTGCCGTGGT+AGG - chr4_3:54589828-54589847 None:intergenic 55.0%
!! GCTATAGTAGGGTGTTGCCG+TGG - chr4_3:54589832-54589851 None:intergenic 55.0%
CCTCGTGAGCTTAGCACAGT+TGG - chr4_3:54590047-54590066 None:intergenic 55.0%
CCAACTGTGCTAAGCTCACG+AGG + chr4_3:54590044-54590063 Msa0648180:intron 55.0%
! AGGGGTTAGATAGGCTGGCT+TGG - chr4_3:54590363-54590382 None:intergenic 55.0%
GTCCAATTTGATCGGGCCAG+TGG + chr4_3:54591780-54591799 Msa0648180:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG + chr4_3:54591795-54591814 Msa0648180:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG - chr4_3:54591799-54591818 None:intergenic 55.0%
AACCATTGCCCTTGGGGCAT+TGG + chr4_3:54592994-54593013 Msa0648180:intron 55.0%
AACCAATGCCCCAAGGGCAA+TGG - chr4_3:54592999-54593018 None:intergenic 55.0%
CTCCGGAATACCCATGTCTC+CGG + chr4_3:54593643-54593662 Msa0648180:intron 55.0%
CGTTGCAGATCCGGAGACAT+GGG - chr4_3:54593656-54593675 None:intergenic 55.0%
ACGTTGCAGATCCGGAGACA+TGG - chr4_3:54593657-54593676 None:intergenic 55.0%
!! CACCCCTAGTTGGTGGATGA+AGG + chr4_3:54593922-54593941 Msa0648180:intron 55.0%
CGGGAATTAGGACCCGAACC+AGG + chr4_3:54587314-54587333 Msa0648180:five_prime_UTR 60.0%
! TCGAGGAGCACGTGAGCATG+TGG + chr4_3:54587682-54587701 Msa0648180:five_prime_UTR 60.0%
! CGAGGAGCACGTGAGCATGT+GGG + chr4_3:54587683-54587702 Msa0648180:five_prime_UTR 60.0%
GATCGGGCCAGTGGAACCTA+TGG + chr4_3:54591789-54591808 Msa0648180:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 54587075 54595215 54587075 ID=Msa0648180;Name=Msa0648180
chr4_3 mRNA 54587075 54595215 54587075 ID=Msa0648180-mRNA-1;Parent=Msa0648180;Name=Msa0648180-mRNA-1;_AED=0.30;_eAED=0.30;_QI=1813|1|1|1|0.8|0.66|6|295|471
chr4_3 exon 54587075 54589070 54587075 ID=Msa0648180-mRNA-1:exon:13840;Parent=Msa0648180-mRNA-1
chr4_3 exon 54589168 54589740 54589168 ID=Msa0648180-mRNA-1:exon:13841;Parent=Msa0648180-mRNA-1
chr4_3 exon 54590139 54590492 54590139 ID=Msa0648180-mRNA-1:exon:13842;Parent=Msa0648180-mRNA-1
chr4_3 exon 54591730 54591867 54591730 ID=Msa0648180-mRNA-1:exon:13843;Parent=Msa0648180-mRNA-1
chr4_3 exon 54594711 54595021 54594711 ID=Msa0648180-mRNA-1:exon:13844;Parent=Msa0648180-mRNA-1
chr4_3 exon 54595064 54595215 54595064 ID=Msa0648180-mRNA-1:exon:13845;Parent=Msa0648180-mRNA-1
chr4_3 five_prime_UTR 54587075 54588887 54587075 ID=Msa0648180-mRNA-1:five_prime_utr;Parent=Msa0648180-mRNA-1
chr4_3 CDS 54588888 54589070 54588888 ID=Msa0648180-mRNA-1:cds;Parent=Msa0648180-mRNA-1
chr4_3 CDS 54589168 54589740 54589168 ID=Msa0648180-mRNA-1:cds;Parent=Msa0648180-mRNA-1
chr4_3 CDS 54590139 54590492 54590139 ID=Msa0648180-mRNA-1:cds;Parent=Msa0648180-mRNA-1
chr4_3 CDS 54591730 54591867 54591730 ID=Msa0648180-mRNA-1:cds;Parent=Msa0648180-mRNA-1
chr4_3 CDS 54594711 54594878 54594711 ID=Msa0648180-mRNA-1:cds;Parent=Msa0648180-mRNA-1
chr4_3 three_prime_UTR 54594879 54595021 54594879 ID=Msa0648180-mRNA-1:three_prime_utr;Parent=Msa0648180-mRNA-1
chr4_3 three_prime_UTR 54595064 54595215 54595064 ID=Msa0648180-mRNA-1:three_prime_utr;Parent=Msa0648180-mRNA-1
Gene Sequence

>Msa0648180

ATGGACAACTTTGAAGATGTAACTGAGCCAGTAAGTCCAAGTGGACAATACTTCAACACCCCTCCCCTATGTTCATATGTTTTTGGATTTTTGGAATTAGAAATTCCAATTGATGACTCTCAAGCTATGTATTTGATCCAACATGTGTTCTTACCTATCAATCCACGCTTCTCCTCCATAATAGTGAGAGATAAAGATGGAAATATGAAATGGAAAAAAGTAGAGGTAAATCCAAAAGATCATTTTAAGGTTCCAATGTTCCCCAAAAATGAGTCAGTTGAATTCTATGATAAAGATTTTGATGATTATGTGTCAAAGATATTAATAGAAAGGACACCAAAAGACAAACCCCTTTGGGAAATCCATGTTATCAAGTATCCAACAAGCAATGCTGCTTACACCATAATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTTTCTTGTCTTCATAGAGCTGATGATCCTTCTCTTCCTTTGTCTTTTCCTAACCGCAAATCATCACAATTGTTAACTCCTAAGAGAGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCCTTTTCAATTCAATCTCTGATTTTGGATGGAGTATATTGAAAAGTTCAATAATTGAAGATGATAAATCACCTATATGGAATGGTGAGGAAGGTTCAGAGTTTCTACCTTGTGCACTATCAAACCTATCATTCTCTCTCGATGAAATCATAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTAATTTTCTATGGTATTAGGCTATATATGCAAGAGATTGATAATAAGGCAAGAATGTCAAATTCAACAGGATTGGTGTTGCTAAGTACCAGGAACATTGGAAGTTACCAATCAATCCAAGACATGACCAAGGCTGATTCAAAATCTCCTTGGGGGAATCATATTTCTTTCTTACATATACCAATCCCAAAGTTAAGCCAAGCCAGCCTATCTAACCCCTTAGATTTTGTTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAGTACTTTCACTGTTTTTCTCACTGAATGGCTTTTAGATATGCAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATCTATATGGTACATTGAGAAACTCAAGTGTTGTCATGTCCAATTTGATCGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTATTTTATAATGTCTGGTGCACCTGAGAGTATAGATATTGCAGTTATGAGCTATGCAAGAATATTAAGAATTACTTTGAAAACACAGAAAGACTTAATTGATGAACAGAAGTTCAAGTTGTGCATGGCAAGAGCCTTTGAAATCATATCCAAAGCAGCATCAATGGAGATTCCCAACAAAAAAAAGATGAAATGA
Protein sequence

>Msa0648180

MDNFEDVTEPVSPSGQYFNTPPLCSYVFGFLELEIPIDDSQAMYLIQHVFLPINPRFSSIIVRDKDGNMKWKKVEVNPKDHFKVPMFPKNESVEFYDKDFDDYVSKILIERTPKDKPLWEIHVIKYPTSNAAYTIIFKLHHALGDGYSLMGALLSCLHRADDPSLPLSFPNRKSSQLLTPKRGFFKWFPSTIFSLFNSISDFGWSILKSSIIEDDKSPIWNGEEGSEFLPCALSNLSFSLDEIITIKSKLGVTINDVITGVIFYGIRLYMQEIDNKARMSNSTGLVLLSTRNIGSYQSIQDMTKADSKSPWGNHISFLHIPIPKLSQASLSNPLDFVWKAQKIIKRKRSTFTVFLTEWLLDMQLKLRGHEAVAKHLYGTLRNSSVVMSNLIGPVEPMALANHPVKGLYFIMSGAPESIDIAVMSYARILRITLKTQKDLIDEQKFKLCMARAFEIISKAASMEIPNKKKMK*