AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0369580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369580 MtrunA17_Chr3g0114241 97.436 780 20 0 1 780 1 780 0.0 1576
Msa0369580 MtrunA17_Chr4g0020011 37.288 295 168 6 427 716 95 377 1.62e-55 195
Msa0369580 MtrunA17_Chr3g0090071 35.315 286 170 5 434 716 114 387 5.64e-49 177
Msa0369580 MtrunA17_Chr4g0039291 34.828 290 176 5 430 716 109 388 1.77e-48 176
Msa0369580 MtrunA17_Chr7g0240091 28.326 233 160 3 485 716 222 448 1.57e-24 107
Msa0369580 MtrunA17_Chr2g0320711 29.010 293 184 8 434 716 157 435 2.07e-21 97.8
Msa0369580 MtrunA17_Chr7g0245261 29.461 241 139 7 482 716 103 318 1.32e-17 85.1
Msa0369580 MtrunA17_Chr2g0318431 27.092 251 162 5 426 670 173 408 9.00e-17 84.3
Msa0369580 MtrunA17_Chr7g0245291 26.939 245 154 6 483 724 111 333 3.95e-16 80.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0369580 AT2G40400.2 69.136 648 171 3 134 780 116 735 0.0 953
Msa0369580 AT2G40400.1 69.136 648 171 3 134 780 116 735 0.0 953
Msa0369580 AT3G56140.1 74.056 609 157 1 134 741 125 733 0.0 947
Msa0369580 AT3G56140.3 74.056 609 157 1 134 741 125 733 0.0 947
Msa0369580 AT2G40400.3 74.393 535 136 1 134 667 116 650 0.0 866
Msa0369580 AT3G56140.2 73.735 514 134 1 229 741 1 514 0.0 789
Msa0369580 AT5G12470.1 35.739 291 178 5 427 716 101 383 1.14e-51 185
Msa0369580 AT2G37860.3 26.897 290 194 7 434 716 154 432 3.33e-25 109
Msa0369580 AT2G37860.4 26.897 290 194 7 434 716 154 432 3.33e-25 109
Msa0369580 AT5G22790.1 27.778 288 195 7 434 716 154 433 7.62e-25 108
Msa0369580 AT3G08630.1 29.237 236 146 8 483 716 103 319 2.63e-21 96.7
Msa0369580 AT3G08640.1 27.600 250 160 7 483 729 106 337 1.41e-20 94.4
Msa0369580 AT5G24690.1 27.203 261 168 6 426 680 172 416 1.14e-17 87.4
Msa0369580 AT2G37860.2 23.858 197 146 2 434 629 154 347 6.49e-13 71.2
Msa0369580 AT2G37860.1 23.858 197 146 2 434 629 154 347 6.49e-13 71.2

Find 212 sgRNAs with CRISPR-Local

Find 445 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGAATGAACTGTCTTTC+TGG 0.090777 3_1:-66927247 None:intergenic
TTATATTACATTGATGAATT+TGG 0.096192 3_1:-66931128 None:intergenic
TCTTCTTGATACAGGGTTTC+AGG 0.152745 3_1:+66928144 Msa0369580:intron
CGAATTGCATCAGTTGTATT+TGG 0.192343 3_1:+66928491 Msa0369580:CDS
CTTAGTTACTGTCGTGAAAA+TGG 0.222076 3_1:+66926229 Msa0369580:CDS
GAATGCTAGAGTTGTTTATT+TGG 0.274662 3_1:+66925390 Msa0369580:CDS
CATAAGATTGCAGCTTGATT+TGG 0.278656 3_1:-66930898 None:intergenic
TATATTACATTGATGAATTT+GGG 0.303406 3_1:-66931127 None:intergenic
CCAAATCTGTCGTTTCCTTT+TGG 0.305738 3_1:+66927010 Msa0369580:CDS
TGTTGATAAGCGTTTATCTT+TGG 0.307657 3_1:+66925495 Msa0369580:CDS
AATGCTAGAGTTGTTTATTT+GGG 0.308054 3_1:+66925391 Msa0369580:CDS
GCCGGTTCAGGCTTCATATC+AGG 0.318344 3_1:+66926947 Msa0369580:CDS
CATAAGATAGCAGCTTGATT+TGG 0.319979 3_1:-66930814 None:intergenic
CTTCAAAAGGGAATTGATCT+TGG 0.320765 3_1:+66927966 Msa0369580:CDS
CACGGACAATCAATTCTTAC+TGG 0.323981 3_1:+66929628 Msa0369580:CDS
TTCATAACCGTTGCTTCAAC+TGG 0.324330 3_1:-66925247 None:intergenic
TTTCTCATCAACAGATCTTA+AGG 0.326958 3_1:+66926861 Msa0369580:intron
GCATATTTACAAGAAATGTT+TGG 0.329508 3_1:-66929593 None:intergenic
AGAACCCAGTGGGGACAAAT+TGG 0.330231 3_1:+66928456 Msa0369580:CDS
ATCTGCAAATCTCCGTTATC+AGG 0.331816 3_1:+66928685 Msa0369580:CDS
AGTTCTCTAATAGGACTTCT+TGG 0.338841 3_1:+66928407 Msa0369580:CDS
TGCTAGTCTTTGCAAGAACT+TGG 0.340316 3_1:-66928186 None:intergenic
AGAACTCACTCACCGTTTCC+AGG 0.340540 3_1:+66928049 Msa0369580:CDS
TTCTTGAAGAGCTGGTAAAT+AGG 0.349154 3_1:+66931014 Msa0369580:three_prime_UTR
GACGACAAGGGCGGCGGAGG+AGG 0.358045 3_1:+66925201 Msa0369580:CDS
GAGGTTGACACGGCGGCGTT+TGG 0.363665 3_1:-66925032 None:intergenic
GGGAGAAGCTGAACAAGTTC+CGG 0.364561 3_1:+66925411 Msa0369580:CDS
CATATTTACAAGAAATGTTT+GGG 0.367643 3_1:-66929592 None:intergenic
ATTAGAGAACTAATGTTATC+AGG 0.372366 3_1:-66928395 None:intergenic
GGAACCACTTAATCAGTATA+TGG 0.373160 3_1:+66925546 Msa0369580:CDS
CGGCGGTGGAATATGAGTTT+TGG 0.373789 3_1:-66924981 None:intergenic
ACATATGGAGCTAGAGGAAC+TGG 0.381829 3_1:+66927163 Msa0369580:CDS
CCAAAAGGAAACGACAGATT+TGG 0.382199 3_1:-66927010 None:intergenic
TATGCACCTCCAGCCGGTTC+AGG 0.382397 3_1:+66926935 Msa0369580:CDS
TTTGTTATGCAGATAATTGC+TGG 0.390425 3_1:+66929534 Msa0369580:intron
ATGCATTGTATAAGACTTCA+AGG 0.390763 3_1:-66926170 None:intergenic
GATAACATTAGTTCTCTAAT+AGG 0.396181 3_1:+66928398 Msa0369580:CDS
AGAGCTTGACTATGTTATTA+CGG 0.398518 3_1:+66928280 Msa0369580:CDS
TTCTCTCTGCGGCGACGACA+AGG 0.400440 3_1:+66925188 Msa0369580:CDS
GCTCGGGTTATGAATGCTGC+TGG 0.402906 3_1:+66927355 Msa0369580:CDS
GTCAAAGCAATTTCTGCTAC+AGG 0.405412 3_1:-66927320 None:intergenic
TGTTTGTTAGTGATGATTGC+TGG 0.407690 3_1:-66928605 None:intergenic
GCAATTTCTGCTACAGGGTC+TGG 0.409182 3_1:-66927314 None:intergenic
GTAAATAGGCACAAAGGAAT+AGG 0.413271 3_1:+66931028 Msa0369580:three_prime_UTR
ATCTTGCAAAATATGCTTGA+TGG 0.416055 3_1:+66927094 Msa0369580:CDS
GGTTCGAGATGATAAGGAAT+TGG 0.416736 3_1:+66925432 Msa0369580:CDS
GTTTGGCGGCGCGGAATTGT+CGG 0.421526 3_1:-66925015 None:intergenic
TTGGCTTCAGGATCTTCAAA+AGG 0.426441 3_1:+66927953 Msa0369580:intron
GTTGGATTTATTTCAAGTAT+TGG 0.430933 3_1:+66928533 Msa0369580:CDS
AGATATGAGCTTGGACCAAA+AGG 0.431226 3_1:-66927025 None:intergenic
AGATTCCAATTTGTCCCCAC+TGG 0.431706 3_1:-66928461 None:intergenic
TCATACTCCTGCCATCGTTC+AGG 0.432726 3_1:-66926199 None:intergenic
TCACGACAGTAACTAAGAAT+AGG 0.433080 3_1:-66926223 None:intergenic
GGCGACGACAAGGGCGGCGG+AGG 0.433973 3_1:+66925198 Msa0369580:CDS
GGCGAATGAACTGTCTTTCT+GGG 0.434604 3_1:-66927246 None:intergenic
TAGGTGAACCGTTGGCGATA+GGG 0.435940 3_1:+66925335 Msa0369580:CDS
GCCCACTAATTCCTTCTGCT+TGG 0.436484 3_1:-66926889 None:intergenic
TTGACCGGGTTGAGATTGCT+CGG 0.437015 3_1:+66927338 Msa0369580:CDS
TTATCCATATACTGATTAAG+TGG 0.439194 3_1:-66925550 None:intergenic
GAGAAAGAAGCCTGAGCATT+GGG 0.440199 3_1:-66924899 None:intergenic
GTTGTTTCCGTCGTGGTGTT+CGG 0.441955 3_1:-66925077 None:intergenic
GGCGGAGGAGGAGAAGATAA+AGG 0.443539 3_1:+66925213 Msa0369580:CDS
TCTATCTTCTTCACTTCCTC+CGG 0.445590 3_1:-66925271 None:intergenic
CAACCGGCGAGGAGTGTTGA+TGG 0.446976 3_1:+66925135 Msa0369580:CDS
GTTGACACGGCGGCGTTTGG+CGG 0.450660 3_1:-66925029 None:intergenic
TGAAGCAACGGTTATGAAAC+CGG 0.454037 3_1:+66925252 Msa0369580:CDS
GGTCTAAAACTCGCTGGCGT+TGG 0.455815 3_1:+66928515 Msa0369580:CDS
GCCTGATATGAAGCCTGAAC+CGG 0.457500 3_1:-66926948 None:intergenic
CTTCTTGATACAGGGTTTCA+GGG 0.463114 3_1:+66928145 Msa0369580:intron
GTTCTACAGCACGAAGCAAC+CGG 0.463888 3_1:+66925119 Msa0369580:CDS
TTCTCTTTCCCTATCGCCAA+CGG 0.465484 3_1:-66925343 None:intergenic
GCTCAGGCTTCTTTCTCCAC+AGG 0.465749 3_1:+66924905 Msa0369580:CDS
GGAAAGAGAAAGGGAAAGTG+TGG 0.466655 3_1:+66925356 Msa0369580:CDS
GCAGATAATTGCTGGGGTTG+TGG 0.473980 3_1:+66929542 Msa0369580:intron
GTAGCAGAAATTGCTTTGAC+CGG 0.474834 3_1:+66927323 Msa0369580:CDS
GGTGCAAGCCATGTCACATA+TGG 0.477383 3_1:+66927148 Msa0369580:CDS
CATTGATGAATTTGGGATGT+GGG 0.481685 3_1:-66931120 None:intergenic
GGAGAAGATAAAGGAGAATA+CGG 0.489654 3_1:+66925222 Msa0369580:CDS
ATTGCATCAGTTGTATTTGG+TGG 0.489742 3_1:+66928494 Msa0369580:CDS
TGCGGCGACGACAAGGGCGG+CGG 0.490808 3_1:+66925195 Msa0369580:CDS
TGGCTTCAGGATCTTCAAAA+GGG 0.490844 3_1:+66927954 Msa0369580:intron
TTGTTATGCAGATAATTGCT+GGG 0.493083 3_1:+66929535 Msa0369580:intron
GAAGCTCCGGCCGCTAGAAA+CGG 0.494762 3_1:-66925160 None:intergenic
GATTCCAATTTGTCCCCACT+GGG 0.496606 3_1:-66928460 None:intergenic
TGATCTTGGTTTAGTATCAC+CGG 0.498342 3_1:+66927980 Msa0369580:CDS
GGGTTTCAGGGAAAGATTGT+TGG 0.502306 3_1:+66928157 Msa0369580:intron
GTCCAAGCAGAAGGAATTAG+TGG 0.503501 3_1:+66926887 Msa0369580:CDS
AGTTCCGGTTCGAGATGATA+AGG 0.504021 3_1:+66925426 Msa0369580:CDS
AATACAAATTTACCTGGAAA+CGG 0.504032 3_1:-66928061 None:intergenic
ATGCTTGATGGAGGGGCCAC+CGG 0.507280 3_1:+66927106 Msa0369580:CDS
CTCTAGCTCCATATGTGACA+TGG 0.508607 3_1:-66927156 None:intergenic
GCAAAATATGCTTGATGGAG+GGG 0.508686 3_1:+66927099 Msa0369580:CDS
AGTGGTTCCTGAAGATCAGC+AGG 0.508810 3_1:-66925532 None:intergenic
TTGAAATGCATTGTCAGGGA+TGG 0.509174 3_1:-66928432 None:intergenic
GAAAGTAAGTCACGTGCGGC+GGG 0.513194 3_1:-66924928 None:intergenic
TTGGCGATAGGGAAAGAGAA+AGG 0.515290 3_1:+66925346 Msa0369580:CDS
ATGGCACCGTTTCTAGCGGC+CGG 0.517585 3_1:+66925154 Msa0369580:CDS
ATAGGTGAACCGTTGGCGAT+AGG 0.517601 3_1:+66925334 Msa0369580:CDS
ATATACGATGCAACGGCGAT+AGG 0.519394 3_1:+66925316 Msa0369580:CDS
ACGGACAATCAATTCTTACT+GGG 0.519712 3_1:+66929629 Msa0369580:CDS
AGGAATGATAAAGTTGGTGC+AGG 0.519719 3_1:-66928347 None:intergenic
TCTCTCTGCGGCGACGACAA+GGG 0.521240 3_1:+66925189 Msa0369580:CDS
GAATCTGATGTAGGTGGCTC+AGG 0.521983 3_1:-66930790 None:intergenic
CACGGCGGCGTTTGGCGGCG+CGG 0.526669 3_1:-66925024 None:intergenic
GTTCTCTAAATACCTGATAA+CGG 0.527581 3_1:-66928697 None:intergenic
TTGGCCGCCTGAACGATGGC+AGG 0.528649 3_1:+66926192 Msa0369580:CDS
GGAGAAAGAAGCCTGAGCAT+TGG 0.530325 3_1:-66924900 None:intergenic
AGAGAGAAGAAACGAAGCTC+CGG 0.531629 3_1:-66925173 None:intergenic
GCTAGTCTTTGCAAGAACTT+GGG 0.533750 3_1:-66928185 None:intergenic
GAATCTGATGAAGGTGGCTC+AGG 0.534682 3_1:-66930874 None:intergenic
TGAAGTCTTATACAATGCAT+TGG 0.535749 3_1:+66926173 Msa0369580:CDS
ATAAGTATACAACTAAGCTA+TGG 0.537813 3_1:-66931080 None:intergenic
TAGGAAAGGAATGATAAAGT+TGG 0.537940 3_1:-66928353 None:intergenic
CAAAGACTAGCAATAGAAGA+AGG 0.538188 3_1:+66928197 Msa0369580:CDS
AATTCCTTATCATCTCGAAC+CGG 0.538956 3_1:-66925430 None:intergenic
ATTGACCTCGCACGCTCTAC+CGG 0.539341 3_1:+66930742 Msa0369580:CDS
GACTGTCATGGCAGGATGGA+TGG 0.539731 3_1:+66926142 Msa0369580:intron
ACATTGATGAATTTGGGATG+TGG 0.544086 3_1:-66931121 None:intergenic
TCTTAGCTGCGTTGATGGAG+AGG 0.545982 3_1:-66925051 None:intergenic
TTGCTGGGGTTGTGGAGCAT+CGG 0.546344 3_1:+66929550 Msa0369580:CDS
GGAAGGTACGGCACGTGAGA+CGG 0.547035 3_1:-66924960 None:intergenic
TGAAGGTGGCTCAGGTGACT+CGG 0.549801 3_1:-66930866 None:intergenic
TGAATGCTGCTGGGCAGAGA+CGG 0.550691 3_1:+66927365 Msa0369580:CDS
AAATTTGAACAGACCTTCAG+TGG 0.553430 3_1:-66926277 None:intergenic
TTAAGGACTGTCCAAGCAGA+AGG 0.554027 3_1:+66926878 Msa0369580:CDS
GAATGCTGCTGGGCAGAGAC+GGG 0.554415 3_1:+66927366 Msa0369580:CDS
GAGACGGGATGCCCTCCCAC+AGG 0.554747 3_1:+66927381 Msa0369580:CDS
TGTAGGTGGCTCAGGTGACT+CGG 0.556660 3_1:-66930782 None:intergenic
AAATTATATGCACCTCCAGC+CGG 0.558669 3_1:+66926929 Msa0369580:CDS
AGTCACGTGCGGCGGGCCTG+TGG 0.560414 3_1:-66924921 None:intergenic
TGACCGGGTTGAGATTGCTC+GGG 0.562769 3_1:+66927339 Msa0369580:CDS
TGCAAAATATGCTTGATGGA+GGG 0.564237 3_1:+66927098 Msa0369580:CDS
TGCATTGGCCGCCTGAACGA+TGG 0.564565 3_1:+66926188 Msa0369580:CDS
TGCTTGTGGTACTCCACTGA+AGG 0.566420 3_1:+66926264 Msa0369580:CDS
CATATGGAGCTAGAGGAACT+GGG 0.567576 3_1:+66927164 Msa0369580:CDS
GAAAGAGAAAGGGAAAGTGT+GGG 0.568024 3_1:+66925357 Msa0369580:CDS
AAGAAGTTCTGCAATACCTC+CGG 0.571472 3_1:-66927999 None:intergenic
CTCGGGTTATGAATGCTGCT+GGG 0.571983 3_1:+66927356 Msa0369580:CDS
TACTCCTGCCATCGTTCAGG+CGG 0.574643 3_1:-66926196 None:intergenic
TAGCAGAAATTGCTTTGACC+GGG 0.576460 3_1:+66927324 Msa0369580:CDS
AAGCTCATATCTATCTGCAC+AGG 0.578491 3_1:+66927036 Msa0369580:CDS
GGTCTTTCTAACTTGCAGTC+CGG 0.579868 3_1:-66930761 None:intergenic
GGTCTTTGTAACTTGCAGTC+CGG 0.579868 3_1:-66930845 None:intergenic
AGACAGTTCATTCGCCGTGA+GGG 0.581170 3_1:+66927253 Msa0369580:CDS
TGATTTGGAGAATCTGATGT+AGG 0.581495 3_1:-66930799 None:intergenic
TGGCGATAGGGAAAGAGAAA+GGG 0.583202 3_1:+66925347 Msa0369580:CDS
TTTGGTGGTCTAAAACTCGC+TGG 0.583586 3_1:+66928509 Msa0369580:CDS
GGAGGAAGTGAAGAAGATAG+AGG 0.583668 3_1:+66925273 Msa0369580:CDS
AGGAATTAGTGGGCTAACAA+AGG 0.584204 3_1:+66926898 Msa0369580:CDS
TGAAAGTAAGTCACGTGCGG+CGG 0.586751 3_1:-66924929 None:intergenic
TGATTTGGAGAATCTGATGA+AGG 0.587198 3_1:-66930883 None:intergenic
GAACACCACGACGGAAACAA+CGG 0.587520 3_1:+66925079 Msa0369580:CDS
GCTATCTTATGCAACTCTAC+CGG 0.590768 3_1:+66930826 Msa0369580:CDS
TCTATCTGCACAGGCTAGAG+TGG 0.591577 3_1:+66927045 Msa0369580:CDS
GATATGAAGCCTGAACCGGC+TGG 0.591682 3_1:-66926944 None:intergenic
TTCTCAAATTTACGTGACAA+AGG 0.593197 3_1:+66924718 Msa0369580:five_prime_UTR
GGAATCCGTCTTGTTGCTTG+TGG 0.594184 3_1:+66926250 Msa0369580:CDS
GATGAGATTAAAAGTGAATG+AGG 0.595190 3_1:+66930946 Msa0369580:CDS
AACGGCGATAGGTGAACCGT+TGG 0.596522 3_1:+66925327 Msa0369580:CDS
TGTGCAGATAGATATGAGCT+TGG 0.597352 3_1:-66927034 None:intergenic
CGCAATTGACTCATCAGCAT+AGG 0.597542 3_1:-66928372 None:intergenic
GCATTTCAAAAGAACCCAGT+GGG 0.600369 3_1:+66928446 Msa0369580:CDS
TTGACTCATCAGCATAGGAA+AGG 0.600777 3_1:-66928367 None:intergenic
TCACTAACAAACAGATTGCA+AGG 0.600933 3_1:+66928615 Msa0369580:CDS
TTGCAAAATATGCTTGATGG+AGG 0.602043 3_1:+66927097 Msa0369580:CDS
CATGTCACATATGGAGCTAG+AGG 0.602908 3_1:+66927157 Msa0369580:CDS
CAATTCTTACTGGGGAACGC+AGG 0.606143 3_1:+66929638 Msa0369580:CDS
TCAAAGCAATTTCTGCTACA+GGG 0.606508 3_1:-66927319 None:intergenic
TTGTTGATTTCTTTACAGTG+TGG 0.609596 3_1:+66928321 Msa0369580:CDS
GTATACAACTAAGCTATGGA+AGG 0.612490 3_1:-66931076 None:intergenic
GCAGTCCGGTAGAGCGTGCG+AGG 0.617626 3_1:-66930747 None:intergenic
TACGGCGCCAGTTGAAGCAA+CGG 0.619944 3_1:+66925240 Msa0369580:CDS
CGACGCCGTTGTTTCCGTCG+TGG 0.620705 3_1:-66925084 None:intergenic
GTTGATGGCACCGTTTCTAG+CGG 0.621156 3_1:+66925150 Msa0369580:CDS
GTGCCATCAACACTCCTCGC+CGG 0.627563 3_1:-66925138 None:intergenic
GGAAGTGAAGAAGATAGAGG+AGG 0.629985 3_1:+66925276 Msa0369580:CDS
AGTCACAACTATCAACATAC+CGG 0.634556 3_1:-66927125 None:intergenic
CTCTGCGGCGACGACAAGGG+CGG 0.639690 3_1:+66925192 Msa0369580:CDS
GTCGAGGATATACGATGCAA+CGG 0.640151 3_1:+66925309 Msa0369580:CDS
TATTAGCACAGTATCAGAAG+CGG 0.643218 3_1:+66928240 Msa0369580:CDS
AAGAAAACCGAACACCACGA+CGG 0.643908 3_1:+66925070 Msa0369580:CDS
TGGCCAACTAACCTGTGGGA+GGG 0.648648 3_1:-66927392 None:intergenic
TAACCCGAGCAATCTCAACC+CGG 0.649576 3_1:-66927342 None:intergenic
TCCAAGCAGAAGGAATTAGT+GGG 0.651684 3_1:+66926888 Msa0369580:CDS
ATGGCCAACTAACCTGTGGG+AGG 0.651841 3_1:-66927393 None:intergenic
GAGCTGGTAAATAGGCACAA+AGG 0.658070 3_1:+66931022 Msa0369580:three_prime_UTR
GTTATTACGGACACTGTCAG+AGG 0.660546 3_1:+66928293 Msa0369580:CDS
TGTTATGCAGATAATTGCTG+GGG 0.662537 3_1:+66929536 Msa0369580:intron
CGTTGATGGAGAGGTTGACA+CGG 0.667477 3_1:-66925042 None:intergenic
GGTATGTTGATAGTTGTGAC+TGG 0.667974 3_1:+66927127 Msa0369580:CDS
CGGCACGTGAGACGGTTACG+CGG 0.668728 3_1:-66924952 None:intergenic
GAGTACCACAAGCAACAAGA+CGG 0.670544 3_1:-66926255 None:intergenic
AAGACAGTTCATTCGCCGTG+AGG 0.674905 3_1:+66927252 Msa0369580:CDS
TTTGGAGAATCTGATGTAGG+TGG 0.683114 3_1:-66930796 None:intergenic
CGGACAATCAATTCTTACTG+GGG 0.691240 3_1:+66929630 Msa0369580:CDS
CACAACTATCAACATACCGG+TGG 0.692061 3_1:-66927122 None:intergenic
CAACAGGAACTTCTCCCTCA+CGG 0.692731 3_1:-66927267 None:intergenic
CGGTGAAAGTAAGTCACGTG+CGG 0.694390 3_1:-66924932 None:intergenic
ATATGGAGCTAGAGGAACTG+GGG 0.700000 3_1:+66927165 Msa0369580:CDS
TCTTGGTTTAGTATCACCGG+AGG 0.703286 3_1:+66927983 Msa0369580:CDS
ATGAAGCCTGAACCGGCTGG+AGG 0.705896 3_1:-66926941 None:intergenic
TTTGGAGAATCTGATGAAGG+TGG 0.706792 3_1:-66930880 None:intergenic
TGCATTTCAAAAGAACCCAG+TGG 0.707372 3_1:+66928445 Msa0369580:CDS
AGGAGGAAGTGATAACGTCG+AGG 0.707415 3_1:+66925293 Msa0369580:CDS
AGCTTCGTTTCTTCTCTCTG+CGG 0.712622 3_1:+66925177 Msa0369580:CDS
TACGTCATCTCAATCCATTG+TGG 0.714761 3_1:+66924753 Msa0369580:five_prime_UTR
ATTTCTGCTACAGGGTCTGG+CGG 0.715985 3_1:-66927311 None:intergenic
ACAGCACGAAGCAACCGGCG+AGG 0.730554 3_1:+66925124 Msa0369580:CDS
TGATGGAGAGGTTGACACGG+CGG 0.731595 3_1:-66925039 None:intergenic
TGAGTGAGTTCTGAAAGCAG+AGG 0.753513 3_1:-66928038 None:intergenic
CATTTCAAAAGAACCCAGTG+GGG 0.761830 3_1:+66928447 Msa0369580:CDS
AGCAACGGTTATGAAACCGG+AGG 0.762047 3_1:+66925255 Msa0369580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATTTTTTTTTTTT+TGG + chr3_1:66925980-66925999 Msa0369580:intron 0.0%
!!! AAAATAAAGTTAAATTGTTT+TGG - chr3_1:66925623-66925642 None:intergenic 10.0%
!!! ACTATGTATTTTTTTTTTTA+TGG - chr3_1:66925654-66925673 None:intergenic 10.0%
!! GTTTATTTAAATTTAATACA+TGG + chr3_1:66930171-66930190 Msa0369580:intron 10.0%
!!! ATTTTTCAAATCTAATTTTT+TGG + chr3_1:66930700-66930719 Msa0369580:intron 10.0%
!! TAGTTTATGAAAAAAACTTA+TGG - chr3_1:66925767-66925786 None:intergenic 15.0%
!!! TTAAAATTTTAAAATCCTTG+TGG - chr3_1:66926481-66926500 None:intergenic 15.0%
!! AAAAACATAATCTATGAATT+AGG + chr3_1:66926522-66926541 Msa0369580:intron 15.0%
!!! TTCAATGTTTTAAATTTGTT+GGG + chr3_1:66926708-66926727 Msa0369580:intron 15.0%
!!! TCAATTTTTAAATATCATCT+TGG - chr3_1:66926837-66926856 None:intergenic 15.0%
!! CAGAAAAAATAATTCATAAA+AGG - chr3_1:66927564-66927583 None:intergenic 15.0%
!!! TTATGAATTATTTTTTCTGT+AGG + chr3_1:66927565-66927584 Msa0369580:intron 15.0%
!! ATATACAAATTTCTCATTAA+AGG + chr3_1:66930433-66930452 Msa0369580:intron 15.0%
!!! CTTTAAGTTAAAATTTAACA+TGG - chr3_1:66930459-66930478 None:intergenic 15.0%
!! TATATTACATTGATGAATTT+GGG - chr3_1:66931130-66931149 None:intergenic 15.0%
!! TTATATTACATTGATGAATT+TGG - chr3_1:66931131-66931150 None:intergenic 15.0%
!!! TTCATTTTTTTTTCTTCAAC+GGG - chr3_1:66924878-66924897 None:intergenic 20.0%
!!! CTTCATTTTTTTTTCTTCAA+CGG - chr3_1:66924879-66924898 None:intergenic 20.0%
!!! CTTAATAAAGCACTTAATTA+AGG - chr3_1:66925725-66925744 None:intergenic 20.0%
!!! AATAAGAGCATAACAAAAAT+CGG - chr3_1:66925956-66925975 None:intergenic 20.0%
!!! AATTTATGTTTCTTTTACCT+TGG + chr3_1:66926039-66926058 Msa0369580:intron 20.0%
!!! TAGGTTTTTCATAATATTTG+AGG + chr3_1:66926541-66926560 Msa0369580:intron 20.0%
!!! GTTCAATGTTTTAAATTTGT+TGG + chr3_1:66926707-66926726 Msa0369580:intron 20.0%
!!! AACATGATTATATTTCCTTT+TGG + chr3_1:66927934-66927953 Msa0369580:intron 20.0%
!! TCAAAAAATACAAATTTACC+TGG - chr3_1:66928070-66928089 None:intergenic 20.0%
!!! GCATTTTTCCTTTAAATTAT+TGG - chr3_1:66928994-66929013 None:intergenic 20.0%
!! TATTATTGCTGAATTTAATG+TGG + chr3_1:66929053-66929072 Msa0369580:intron 20.0%
!! ATTATTGCTGAATTTAATGT+GGG + chr3_1:66929054-66929073 Msa0369580:intron 20.0%
!!! CTAAGACACTTTTTATTATT+GGG - chr3_1:66929156-66929175 None:intergenic 20.0%
!!! TCTAAGACACTTTTTATTAT+TGG - chr3_1:66929157-66929176 None:intergenic 20.0%
!! CATATTTACAAGAAATGTTT+GGG - chr3_1:66929595-66929614 None:intergenic 20.0%
!! AAGTACAACAAATTATACAT+TGG + chr3_1:66930049-66930068 Msa0369580:intron 20.0%
!! AGTACAACAAATTATACATT+GGG + chr3_1:66930050-66930069 Msa0369580:intron 20.0%
!!! TGCTTACTATTAATTTTTCA+AGG + chr3_1:66930313-66930332 Msa0369580:intron 20.0%
!! ATGAGAAATTTGTATATGAA+AGG - chr3_1:66930430-66930449 None:intergenic 20.0%
!! AAATTACTTATCAAACTTAC+AGG - chr3_1:66930574-66930593 None:intergenic 20.0%
!!! TCATTTTTTTTTCTTCAACG+GGG - chr3_1:66924877-66924896 None:intergenic 25.0%
! AATGCTAGAGTTGTTTATTT+GGG + chr3_1:66925391-66925410 Msa0369580:CDS 25.0%
!! TTATCCATATACTGATTAAG+TGG - chr3_1:66925553-66925572 None:intergenic 25.0%
! TACTTGAATGTGTTTAAGAA+AGG - chr3_1:66925854-66925873 None:intergenic 25.0%
!! GTTCAAATTTTCATTCAAAC+TGG + chr3_1:66926290-66926309 Msa0369580:intron 25.0%
!!! CATTATCTTCTGAAATTTTC+TGG + chr3_1:66926332-66926351 Msa0369580:intron 25.0%
! GGTCTATTCTTTAATCTTTA+TGG - chr3_1:66926460-66926479 None:intergenic 25.0%
! AGATCAGATAATATGTTGAA+AGG + chr3_1:66926641-66926660 Msa0369580:intron 25.0%
! GATCAGATAATATGTTGAAA+GGG + chr3_1:66926642-66926661 Msa0369580:intron 25.0%
!! AATTTAAAACATTGAACGCA+AGG - chr3_1:66926704-66926723 None:intergenic 25.0%
!! AATTTTCTTGATATTCTTGC+AGG - chr3_1:66927193-66927212 None:intergenic 25.0%
!! CAATTTTGTATCACCAAAAT+GGG - chr3_1:66927504-66927523 None:intergenic 25.0%
!! TCAATTTTGTATCACCAAAA+TGG - chr3_1:66927505-66927524 None:intergenic 25.0%
! TCTAAAGGATGATTACATTA+GGG - chr3_1:66927885-66927904 None:intergenic 25.0%
! AATACAAATTTACCTGGAAA+CGG - chr3_1:66928064-66928083 None:intergenic 25.0%
! ATTAGAGAACTAATGTTATC+AGG - chr3_1:66928398-66928417 None:intergenic 25.0%
!! GATAACATTAGTTCTCTAAT+AGG + chr3_1:66928398-66928417 Msa0369580:CDS 25.0%
!! GTTGGATTTATTTCAAGTAT+TGG + chr3_1:66928533-66928552 Msa0369580:CDS 25.0%
! AAAAAGACGTAAAAGAAGAT+TGG + chr3_1:66928752-66928771 Msa0369580:intron 25.0%
!!! CAACTAGTTTTTAAAGATAC+AGG - chr3_1:66928951-66928970 None:intergenic 25.0%
!! GTATCTTTAAAAACTAGTTG+TGG + chr3_1:66928951-66928970 Msa0369580:intron 25.0%
! ATGACTCACCAATAATTTAA+AGG + chr3_1:66928983-66929002 Msa0369580:intron 25.0%
!! ATTTGAGGATATTTTCTTTC+TGG + chr3_1:66929386-66929405 Msa0369580:intron 25.0%
! AACTTCAGTATTAATACAGA+AGG - chr3_1:66929506-66929525 None:intergenic 25.0%
! GCATATTTACAAGAAATGTT+TGG - chr3_1:66929596-66929615 None:intergenic 25.0%
!! ATATGCTATCTTTTGTATCA+CGG + chr3_1:66929610-66929629 Msa0369580:CDS 25.0%
!! TGTTTGAACCCTATAATTTT+CGG + chr3_1:66929752-66929771 Msa0369580:intron 25.0%
! CTTGATATCCGAAAATTATA+GGG - chr3_1:66929763-66929782 None:intergenic 25.0%
! ACTTGATATCCGAAAATTAT+AGG - chr3_1:66929764-66929783 None:intergenic 25.0%
!!! TTTAGTTTTGTGATAGAAAG+AGG + chr3_1:66929911-66929930 Msa0369580:intron 25.0%
!!! TTAGTTTTGTGATAGAAAGA+GGG + chr3_1:66929912-66929931 Msa0369580:intron 25.0%
! GTAGTATGTGAACTTAATAT+TGG + chr3_1:66929957-66929976 Msa0369580:intron 25.0%
! TATGTGAACTTAATATTGGA+AGG + chr3_1:66929961-66929980 Msa0369580:intron 25.0%
! ATGTGAACTTAATATTGGAA+GGG + chr3_1:66929962-66929981 Msa0369580:intron 25.0%
! GTACAACAAATTATACATTG+GGG + chr3_1:66930051-66930070 Msa0369580:intron 25.0%
!!! GTGAAGATTATTTTTTCACT+CGG + chr3_1:66930075-66930094 Msa0369580:intron 25.0%
! GTTAAAGAAGGATTCAAAAA+TGG - chr3_1:66930106-66930125 None:intergenic 25.0%
! ATTAAGGCAATTGTTAAAGA+AGG - chr3_1:66930118-66930137 None:intergenic 25.0%
! TTCTTTAACAATTGCCTTAA+TGG + chr3_1:66930117-66930136 Msa0369580:intron 25.0%
! ATCCTTAAAAAGTGATTTAG+AGG + chr3_1:66930256-66930275 Msa0369580:intron 25.0%
!!! TACCTCTAAATCACTTTTTA+AGG - chr3_1:66930261-66930280 None:intergenic 25.0%
! ATTAAATATTCCCAACTTCA+GGG + chr3_1:66930359-66930378 Msa0369580:intron 25.0%
!! AATAGATGCTCTAAGTTAAA+AGG - chr3_1:66930490-66930509 None:intergenic 25.0%
! TTGACTTTCCTTTAATTGAA+GGG - chr3_1:66930514-66930533 None:intergenic 25.0%
!! ATTGACTTTCCTTTAATTGA+AGG - chr3_1:66930515-66930534 None:intergenic 25.0%
! AATTACGACAATAAAGTTGA+AGG + chr3_1:66930532-66930551 Msa0369580:intron 25.0%
! ATTACGACAATAAAGTTGAA+GGG + chr3_1:66930533-66930552 Msa0369580:intron 25.0%
!! CAAAATAATTCTCTCTTTTG+AGG - chr3_1:66930610-66930629 None:intergenic 25.0%
! AAACCAAGATAAGCATAATT+TGG + chr3_1:66930630-66930649 Msa0369580:intron 25.0%
! AATCCAAATTATGCTTATCT+TGG - chr3_1:66930636-66930655 None:intergenic 25.0%
!!! TATAGGTTCTAAATTTGACT+AGG + chr3_1:66930677-66930696 Msa0369580:intron 25.0%
!!! TTTTTTTTTTCTTGAAGAGC+TGG + chr3_1:66931006-66931025 Msa0369580:three_prime_UTR 25.0%
! ATAAGTATACAACTAAGCTA+TGG - chr3_1:66931083-66931102 None:intergenic 25.0%
TTCTCAAATTTACGTGACAA+AGG + chr3_1:66924718-66924737 Msa0369580:five_prime_UTR 30.0%
GCCATGAAAAACATAAACAT+GGG + chr3_1:66924775-66924794 Msa0369580:five_prime_UTR 30.0%
! TCCCATGTTTATGTTTTTCA+TGG - chr3_1:66924779-66924798 None:intergenic 30.0%
!!! AATATGAGTTTTGGAAGGTA+CGG - chr3_1:66924975-66924994 None:intergenic 30.0%
GAATGCTAGAGTTGTTTATT+TGG + chr3_1:66925390-66925409 Msa0369580:CDS 30.0%
! TGTTGATAAGCGTTTATCTT+TGG + chr3_1:66925495-66925514 Msa0369580:CDS 30.0%
TTAATTAAGGCTTCTCTTGT+TGG - chr3_1:66925712-66925731 None:intergenic 30.0%
AACTATCTTGATGAGCTTAT+TGG + chr3_1:66925782-66925801 Msa0369580:intron 30.0%
ATGAGCTTATTGGAATACAT+CGG + chr3_1:66925792-66925811 Msa0369580:intron 30.0%
CAATAGATAAATAGCAACCA+AGG - chr3_1:66926059-66926078 None:intergenic 30.0%
!! CTTGGTTGCTATTTATCTAT+TGG + chr3_1:66926057-66926076 Msa0369580:intron 30.0%
TCTAGCAATGACAAAAATAC+AGG - chr3_1:66926085-66926104 None:intergenic 30.0%
TAAGATAAACTTGACTGTCA+TGG + chr3_1:66926130-66926149 Msa0369580:intron 30.0%
ATGCATTGTATAAGACTTCA+AGG - chr3_1:66926173-66926192 None:intergenic 30.0%
! TGAAGTCTTATACAATGCAT+TGG + chr3_1:66926173-66926192 Msa0369580:CDS 30.0%
!!! TATCTTCTGAAATTTTCTGG+TGG + chr3_1:66926335-66926354 Msa0369580:intron 30.0%
TGACTTACCCTAGATTAAAA+TGG + chr3_1:66926421-66926440 Msa0369580:intron 30.0%
!! GTGCTTACCATTTTAATCTA+GGG - chr3_1:66926431-66926450 None:intergenic 30.0%
!! AGTGCTTACCATTTTAATCT+AGG - chr3_1:66926432-66926451 None:intergenic 30.0%
AGATTAAAATGGTAAGCACT+TGG + chr3_1:66926432-66926451 Msa0369580:intron 30.0%
AGATTAAAGAATAGACCACA+AGG + chr3_1:66926463-66926482 Msa0369580:intron 30.0%
! TTCACCCTTTTGTTAAATTC+GGG - chr3_1:66926569-66926588 None:intergenic 30.0%
! GTTCACCCTTTTGTTAAATT+CGG - chr3_1:66926570-66926589 None:intergenic 30.0%
! CAAAAGGGTGAACATAATTT+TGG + chr3_1:66926577-66926596 Msa0369580:intron 30.0%
GATATTTACCATACTGCATA+AGG - chr3_1:66926610-66926629 None:intergenic 30.0%
TTTCTCATCAACAGATCTTA+AGG + chr3_1:66926861-66926880 Msa0369580:intron 30.0%
! ATCAAGCATATTTTGCAAGA+TGG - chr3_1:66927095-66927114 None:intergenic 30.0%
ATCTTGCAAAATATGCTTGA+TGG + chr3_1:66927094-66927113 Msa0369580:CDS 30.0%
AAGCTAATAAGTGAACGAAA+TGG - chr3_1:66927415-66927434 None:intergenic 30.0%
TAAAGGGCTTAAATTTGGAA+GGG - chr3_1:66927468-66927487 None:intergenic 30.0%
ATAAAGGGCTTAAATTTGGA+AGG - chr3_1:66927469-66927488 None:intergenic 30.0%
GCACAACAATATATGATCTA+AGG + chr3_1:66927613-66927632 Msa0369580:intron 30.0%
CAATATATGATCTAAGGACT+TGG + chr3_1:66927619-66927638 Msa0369580:intron 30.0%
! GACTTGGACTTTAAACTTTT+GGG + chr3_1:66927635-66927654 Msa0369580:intron 30.0%
!! TACATTGATTCCAAGTGTTT+AGG + chr3_1:66927742-66927761 Msa0369580:intron 30.0%
!! ACATTGATTCCAAGTGTTTA+GGG + chr3_1:66927743-66927762 Msa0369580:intron 30.0%
! CAGTGGTAACTAGTTTAAAT+TGG + chr3_1:66927785-66927804 Msa0369580:intron 30.0%
AAATCTGATGATTAGGTAGT+TGG + chr3_1:66927813-66927832 Msa0369580:intron 30.0%
AATCTGATGATTAGGTAGTT+GGG + chr3_1:66927814-66927833 Msa0369580:intron 30.0%
GTCTAAAGGATGATTACATT+AGG - chr3_1:66927886-66927905 None:intergenic 30.0%
AATGTAATCATCCTTTAGAC+AGG + chr3_1:66927886-66927905 Msa0369580:intron 30.0%
!!! TTATATTTCCTTTTGGCTTC+AGG + chr3_1:66927941-66927960 Msa0369580:intron 30.0%
TGAGATTATTTCATCACTCT+CGG + chr3_1:66928115-66928134 Msa0369580:intron 30.0%
AGAGCTTGACTATGTTATTA+CGG + chr3_1:66928280-66928299 Msa0369580:CDS 30.0%
!! TTGTTGATTTCTTTACAGTG+TGG + chr3_1:66928321-66928340 Msa0369580:CDS 30.0%
TAGGAAAGGAATGATAAAGT+TGG - chr3_1:66928356-66928375 None:intergenic 30.0%
!!! TCTTTTGAAATGCATTGTCA+GGG - chr3_1:66928439-66928458 None:intergenic 30.0%
!!! TTCTTTTGAAATGCATTGTC+AGG - chr3_1:66928440-66928459 None:intergenic 30.0%
!!! GTTGTTTATGCACTTTTTCT+TGG + chr3_1:66928659-66928678 Msa0369580:CDS 30.0%
CTGTGTCAATAATCATATAC+TGG - chr3_1:66928869-66928888 None:intergenic 30.0%
CAGTATATGATTATTGACAC+AGG + chr3_1:66928867-66928886 Msa0369580:intron 30.0%
! ACAGGACAAATTTTGCAATT+TGG + chr3_1:66928885-66928904 Msa0369580:intron 30.0%
GTAAATGAGTCTCACAAATA+AGG - chr3_1:66929106-66929125 None:intergenic 30.0%
GCAACCAAAAATTCCAATTT+AGG + chr3_1:66929469-66929488 Msa0369580:intron 30.0%
! CAGACCTAAATTGGAATTTT+TGG - chr3_1:66929476-66929495 None:intergenic 30.0%
! TTTGTTATGCAGATAATTGC+TGG + chr3_1:66929534-66929553 Msa0369580:intron 30.0%
TTGTTATGCAGATAATTGCT+GGG + chr3_1:66929535-66929554 Msa0369580:intron 30.0%
TTATAGGGTTCAAACACAAT+CGG - chr3_1:66929748-66929767 None:intergenic 30.0%
TATACGCTTGATTGTGAAAT+TGG - chr3_1:66929821-66929840 None:intergenic 30.0%
AGCGTATATGAAAATGTGTA+TGG + chr3_1:66929833-66929852 Msa0369580:intron 30.0%
GTATATGAAAATGTGTATGG+TGG + chr3_1:66929836-66929855 Msa0369580:intron 30.0%
!!! TAGTTTTGTGATAGAAAGAG+GGG + chr3_1:66929913-66929932 Msa0369580:intron 30.0%
ATTCCATAACAAGATCTCTT+AGG - chr3_1:66930004-66930023 None:intergenic 30.0%
CATTAAATATTCCCAACTTC+AGG + chr3_1:66930358-66930377 Msa0369580:intron 30.0%
TATATGAAAGGAGATAGTGT+TGG - chr3_1:66930418-66930437 None:intergenic 30.0%
ATCTATTCCCCTTCAATTAA+AGG + chr3_1:66930503-66930522 Msa0369580:intron 30.0%
TGACTTTCCTTTAATTGAAG+GGG - chr3_1:66930513-66930532 None:intergenic 30.0%
TTAATCATTCATCTGCGTAT+AGG + chr3_1:66930660-66930679 Msa0369580:intron 30.0%
! ACTTTTAATCTCATCAATGC+TGG - chr3_1:66930941-66930960 None:intergenic 30.0%
GATGAGATTAAAAGTGAATG+AGG + chr3_1:66930946-66930965 Msa0369580:CDS 30.0%
TTACAACAAAAATGTCGCAA+GGG - chr3_1:66930980-66930999 None:intergenic 30.0%
ATTACAACAAAAATGTCGCA+AGG - chr3_1:66930981-66931000 None:intergenic 30.0%
! TATGTTTTTCATGGCCACAA+TGG - chr3_1:66924770-66924789 None:intergenic 35.0%
GGCCATGAAAAACATAAACA+TGG + chr3_1:66924774-66924793 Msa0369580:five_prime_UTR 35.0%
! AATTGTCGGAGTTTTTCGTT+CGG - chr3_1:66925004-66925023 None:intergenic 35.0%
GGAGAAGATAAAGGAGAATA+CGG + chr3_1:66925222-66925241 Msa0369580:CDS 35.0%
AATTCCTTATCATCTCGAAC+CGG - chr3_1:66925433-66925452 None:intergenic 35.0%
GGAACCACTTAATCAGTATA+TGG + chr3_1:66925546-66925565 Msa0369580:CDS 35.0%
ACAAAAATCGGCAATTCTCA+AGG - chr3_1:66925944-66925963 None:intergenic 35.0%
TCACGACAGTAACTAAGAAT+AGG - chr3_1:66926226-66926245 None:intergenic 35.0%
CTTAGTTACTGTCGTGAAAA+TGG + chr3_1:66926229-66926248 Msa0369580:CDS 35.0%
AAATTTGAACAGACCTTCAG+TGG - chr3_1:66926280-66926299 None:intergenic 35.0%
!!! TTCTGAAATTTTCTGGTGGT+GGG + chr3_1:66926339-66926358 Msa0369580:intron 35.0%
AGGTTCCCGAATTTAACAAA+AGG + chr3_1:66926561-66926580 Msa0369580:intron 35.0%
GGTTCCCGAATTTAACAAAA+GGG + chr3_1:66926562-66926581 Msa0369580:intron 35.0%
TATGTTGAAAGGGTGAATGA+TGG + chr3_1:66926652-66926671 Msa0369580:intron 35.0%
TGAATGATGGCAAGAGAATT+AGG + chr3_1:66926665-66926684 Msa0369580:intron 35.0%
! CATATTTTGCAAGATGGTCT+GGG - chr3_1:66927089-66927108 None:intergenic 35.0%
TTGCAAAATATGCTTGATGG+AGG + chr3_1:66927097-66927116 Msa0369580:CDS 35.0%
TGCAAAATATGCTTGATGGA+GGG + chr3_1:66927098-66927117 Msa0369580:CDS 35.0%
AGTCACAACTATCAACATAC+CGG - chr3_1:66927128-66927147 None:intergenic 35.0%
!!! TTCCTGTTGCTGATTTTTTG+TGG + chr3_1:66927281-66927300 Msa0369580:CDS 35.0%
TACCACAAAAAATCAGCAAC+AGG - chr3_1:66927286-66927305 None:intergenic 35.0%
TCAAAGCAATTTCTGCTACA+GGG - chr3_1:66927322-66927341 None:intergenic 35.0%
AAAGGGCTTAAATTTGGAAG+GGG - chr3_1:66927467-66927486 None:intergenic 35.0%
GCACATAAAGGGCTTAAATT+TGG - chr3_1:66927473-66927492 None:intergenic 35.0%
! GGACTTGGACTTTAAACTTT+TGG + chr3_1:66927634-66927653 Msa0369580:intron 35.0%
!! TGGACTTTAAACTTTTGGGA+TGG + chr3_1:66927639-66927658 Msa0369580:intron 35.0%
!!! GGACTTTAAACTTTTGGGAT+GGG + chr3_1:66927640-66927659 Msa0369580:intron 35.0%
!! CATTGATTCCAAGTGTTTAG+GGG + chr3_1:66927744-66927763 Msa0369580:intron 35.0%
! ATTGATTCCAAGTGTTTAGG+GGG + chr3_1:66927745-66927764 Msa0369580:intron 35.0%
AATTATACCCCCTAAACACT+TGG - chr3_1:66927755-66927774 None:intergenic 35.0%
GGTTGCAAAATCTGATGATT+AGG + chr3_1:66927806-66927825 Msa0369580:intron 35.0%
TAATCATCCTTTAGACAGGA+TGG + chr3_1:66927890-66927909 Msa0369580:intron 35.0%
CTTCAAAAGGGAATTGATCT+TGG + chr3_1:66927966-66927985 Msa0369580:CDS 35.0%
TGATCTTGGTTTAGTATCAC+CGG + chr3_1:66927980-66927999 Msa0369580:CDS 35.0%
CAAAGACTAGCAATAGAAGA+AGG + chr3_1:66928197-66928216 Msa0369580:CDS 35.0%
TATTAGCACAGTATCAGAAG+CGG + chr3_1:66928240-66928259 Msa0369580:CDS 35.0%
AGTTCTCTAATAGGACTTCT+TGG + chr3_1:66928407-66928426 Msa0369580:CDS 35.0%
CGAATTGCATCAGTTGTATT+TGG + chr3_1:66928491-66928510 Msa0369580:CDS 35.0%
ATTGCATCAGTTGTATTTGG+TGG + chr3_1:66928494-66928513 Msa0369580:CDS 35.0%
! TGTTTGTTAGTGATGATTGC+TGG - chr3_1:66928608-66928627 None:intergenic 35.0%
TCACTAACAAACAGATTGCA+AGG + chr3_1:66928615-66928634 Msa0369580:CDS 35.0%
!!! ACAACTGCTGTTTTGAGTAT+CGG - chr3_1:66928644-66928663 None:intergenic 35.0%
GTATGTTGACATTTGAAAGC+AGG + chr3_1:66928916-66928935 Msa0369580:intron 35.0%
TGTGAGACTCATTTACAAAG+TGG + chr3_1:66929110-66929129 Msa0369580:intron 35.0%
TTGCAACTTACAATCCTTCA+GGG + chr3_1:66929265-66929284 Msa0369580:intron 35.0%
GTGCAGATGAAGAAATAGAA+AGG - chr3_1:66929348-66929367 None:intergenic 35.0%
TGTTATGCAGATAATTGCTG+GGG + chr3_1:66929536-66929555 Msa0369580:intron 35.0%
ACGGACAATCAATTCTTACT+GGG + chr3_1:66929629-66929648 Msa0369580:CDS 35.0%
CATTTATCTTCGGTTTCAAC+AGG + chr3_1:66930149-66930168 Msa0369580:intron 35.0%
!! AGTGTTGGTGAAATACGATA+CGG - chr3_1:66930403-66930422 None:intergenic 35.0%
! TGATTTGGAGAATCTGATGT+AGG - chr3_1:66930802-66930821 None:intergenic 35.0%
CATAAGATAGCAGCTTGATT+TGG - chr3_1:66930817-66930836 None:intergenic 35.0%
! TGATTTGGAGAATCTGATGA+AGG - chr3_1:66930886-66930905 None:intergenic 35.0%
CATAAGATTGCAGCTTGATT+TGG - chr3_1:66930901-66930920 None:intergenic 35.0%
TACAACAAAAATGTCGCAAG+GGG - chr3_1:66930979-66930998 None:intergenic 35.0%
TTCTTGAAGAGCTGGTAAAT+AGG + chr3_1:66931014-66931033 Msa0369580:three_prime_UTR 35.0%
GTAAATAGGCACAAAGGAAT+AGG + chr3_1:66931028-66931047 Msa0369580:three_prime_UTR 35.0%
GTATACAACTAAGCTATGGA+AGG - chr3_1:66931079-66931098 None:intergenic 35.0%
! CATTGATGAATTTGGGATGT+GGG - chr3_1:66931123-66931142 None:intergenic 35.0%
! ACATTGATGAATTTGGGATG+TGG - chr3_1:66931124-66931143 None:intergenic 35.0%
TACGTCATCTCAATCCATTG+TGG + chr3_1:66924753-66924772 Msa0369580:five_prime_UTR 40.0%
AAAAATGAAGCCCAATGCTC+AGG + chr3_1:66924889-66924908 Msa0369580:exon 40.0%
!!! GGTGGAATATGAGTTTTGGA+AGG - chr3_1:66924980-66924999 None:intergenic 40.0%
TTCATAACCGTTGCTTCAAC+TGG - chr3_1:66925250-66925269 None:intergenic 40.0%
TGAAGCAACGGTTATGAAAC+CGG + chr3_1:66925252-66925271 Msa0369580:CDS 40.0%
TCTATCTTCTTCACTTCCTC+CGG - chr3_1:66925274-66925293 None:intergenic 40.0%
! GAAAGAGAAAGGGAAAGTGT+GGG + chr3_1:66925357-66925376 Msa0369580:CDS 40.0%
GGTTCGAGATGATAAGGAAT+TGG + chr3_1:66925432-66925451 Msa0369580:CDS 40.0%
ATAAACTTGACTGTCATGGC+AGG + chr3_1:66926134-66926153 Msa0369580:intron 40.0%
!!! CTTCTGAAATTTTCTGGTGG+TGG + chr3_1:66926338-66926357 Msa0369580:intron 40.0%
!! TTTCTGGTGGTGGGTTAATT+AGG + chr3_1:66926348-66926367 Msa0369580:intron 40.0%
GAAACTTGCCTTATGCAGTA+TGG + chr3_1:66926599-66926618 Msa0369580:intron 40.0%
!!! GGGTTTTAGACAGAGTTGTA+TGG + chr3_1:66926728-66926747 Msa0369580:intron 40.0%
! ATCTTGGTGTGACTTGATCT+AGG - chr3_1:66926821-66926840 None:intergenic 40.0%
TCCAAGCAGAAGGAATTAGT+GGG + chr3_1:66926888-66926907 Msa0369580:CDS 40.0%
!! AGGAATTAGTGGGCTAACAA+AGG + chr3_1:66926898-66926917 Msa0369580:CDS 40.0%
AAATTATATGCACCTCCAGC+CGG + chr3_1:66926929-66926948 Msa0369580:CDS 40.0%
CCAAAAGGAAACGACAGATT+TGG - chr3_1:66927013-66927032 None:intergenic 40.0%
!! CCAAATCTGTCGTTTCCTTT+TGG + chr3_1:66927010-66927029 Msa0369580:CDS 40.0%
AGATATGAGCTTGGACCAAA+AGG - chr3_1:66927028-66927047 None:intergenic 40.0%
TGTGCAGATAGATATGAGCT+TGG - chr3_1:66927037-66927056 None:intergenic 40.0%
AAGCTCATATCTATCTGCAC+AGG + chr3_1:66927036-66927055 Msa0369580:CDS 40.0%
! GCATATTTTGCAAGATGGTC+TGG - chr3_1:66927090-66927109 None:intergenic 40.0%
GCAAAATATGCTTGATGGAG+GGG + chr3_1:66927099-66927118 Msa0369580:CDS 40.0%
!! GGTATGTTGATAGTTGTGAC+TGG + chr3_1:66927127-66927146 Msa0369580:CDS 40.0%
GTCAAAGCAATTTCTGCTAC+AGG - chr3_1:66927323-66927342 None:intergenic 40.0%
GTAGCAGAAATTGCTTTGAC+CGG + chr3_1:66927323-66927342 Msa0369580:CDS 40.0%
TAGCAGAAATTGCTTTGACC+GGG + chr3_1:66927324-66927343 Msa0369580:CDS 40.0%
AAGGGCTTAAATTTGGAAGG+GGG - chr3_1:66927466-66927485 None:intergenic 40.0%
!! AGGCACTGATACAAGATACA+TGG - chr3_1:66927544-66927563 None:intergenic 40.0%
AGGATGGTGTCTGCTATTAT+TGG + chr3_1:66927906-66927925 Msa0369580:intron 40.0%
TTGAAGATCCTGAAGCCAAA+AGG - chr3_1:66927952-66927971 None:intergenic 40.0%
TTGGCTTCAGGATCTTCAAA+AGG + chr3_1:66927953-66927972 Msa0369580:intron 40.0%
TGGCTTCAGGATCTTCAAAA+GGG + chr3_1:66927954-66927973 Msa0369580:intron 40.0%
AAGAAGTTCTGCAATACCTC+CGG - chr3_1:66928002-66928021 None:intergenic 40.0%
TTATTTCATCACTCTCGGTC+TGG + chr3_1:66928120-66928139 Msa0369580:intron 40.0%
!! GTCTGGTTCTTCTTGATACA+GGG + chr3_1:66928137-66928156 Msa0369580:intron 40.0%
TCTTCTTGATACAGGGTTTC+AGG + chr3_1:66928144-66928163 Msa0369580:intron 40.0%
CTTCTTGATACAGGGTTTCA+GGG + chr3_1:66928145-66928164 Msa0369580:intron 40.0%
!! GCTAGTCTTTGCAAGAACTT+GGG - chr3_1:66928188-66928207 None:intergenic 40.0%
!! TGCTAGTCTTTGCAAGAACT+TGG - chr3_1:66928189-66928208 None:intergenic 40.0%
!! AGGAATGATAAAGTTGGTGC+AGG - chr3_1:66928350-66928369 None:intergenic 40.0%
TTGACTCATCAGCATAGGAA+AGG - chr3_1:66928370-66928389 None:intergenic 40.0%
TTGAAATGCATTGTCAGGGA+TGG - chr3_1:66928435-66928454 None:intergenic 40.0%
TGCATTTCAAAAGAACCCAG+TGG + chr3_1:66928445-66928464 Msa0369580:CDS 40.0%
GCATTTCAAAAGAACCCAGT+GGG + chr3_1:66928446-66928465 Msa0369580:CDS 40.0%
CATTTCAAAAGAACCCAGTG+GGG + chr3_1:66928447-66928466 Msa0369580:CDS 40.0%
ATCTGCAAATCTCCGTTATC+AGG + chr3_1:66928685-66928704 Msa0369580:CDS 40.0%
! TGCCATTTCCTACAGAAACT+GGG - chr3_1:66928779-66928798 None:intergenic 40.0%
! ATGCCATTTCCTACAGAAAC+TGG - chr3_1:66928780-66928799 None:intergenic 40.0%
GTTTCTGTAGGAAATGGCAT+CGG + chr3_1:66928780-66928799 Msa0369580:intron 40.0%
! CATCGGCATTATCTAGTTCA+TGG + chr3_1:66928797-66928816 Msa0369580:intron 40.0%
GTGGGTCTCACTAAATTATG+CGG + chr3_1:66929072-66929091 Msa0369580:intron 40.0%
TGGGTCTCACTAAATTATGC+GGG + chr3_1:66929073-66929092 Msa0369580:intron 40.0%
CTGAAGGATTGTAAGTTGCA+AGG - chr3_1:66929266-66929285 None:intergenic 40.0%
CTTGCAACTTACAATCCTTC+AGG + chr3_1:66929264-66929283 Msa0369580:intron 40.0%
GTCTGCTGTGTAGTTATTTG+AGG + chr3_1:66929371-66929390 Msa0369580:intron 40.0%
TTCCAATTTAGGTCTGCAAC+TGG + chr3_1:66929480-66929499 Msa0369580:intron 40.0%
CACGGACAATCAATTCTTAC+TGG + chr3_1:66929628-66929647 Msa0369580:CDS 40.0%
CGGACAATCAATTCTTACTG+GGG + chr3_1:66929630-66929649 Msa0369580:CDS 40.0%
! CAATCGGCTTACTTAAGATG+AGG - chr3_1:66929732-66929751 None:intergenic 40.0%
TTGGAAGCTTCGCTAACAAT+AGG - chr3_1:66929802-66929821 None:intergenic 40.0%
! TGAAAATGTGTATGGTGGAG+TGG + chr3_1:66929841-66929860 Msa0369580:intron 40.0%
AAAGAGGGGAAATTCACTTC+TGG + chr3_1:66929927-66929946 Msa0369580:intron 40.0%
CGTCCTAAGAGATCTTGTTA+TGG + chr3_1:66929998-66930017 Msa0369580:intron 40.0%
TAACAATTGCCTTAATGGCC+AGG + chr3_1:66930122-66930141 Msa0369580:intron 40.0%
TTCCCAACTTCAGGGAAATA+TGG + chr3_1:66930367-66930386 Msa0369580:intron 40.0%
GTCCATATTTCCCTGAAGTT+GGG - chr3_1:66930372-66930391 None:intergenic 40.0%
AGTCCATATTTCCCTGAAGT+TGG - chr3_1:66930373-66930392 None:intergenic 40.0%
! GTGTTGGTGAAATACGATAC+GGG - chr3_1:66930402-66930421 None:intergenic 40.0%
TTGGTAAATTGCTGCAGCAA+TGG + chr3_1:66930719-66930738 Msa0369580:intron 40.0%
TTTGGAGAATCTGATGTAGG+TGG - chr3_1:66930799-66930818 None:intergenic 40.0%
GCTATCTTATGCAACTCTAC+CGG + chr3_1:66930826-66930845 Msa0369580:CDS 40.0%
TTTGGAGAATCTGATGAAGG+TGG - chr3_1:66930883-66930902 None:intergenic 40.0%
GAGAAAGAAGCCTGAGCATT+GGG - chr3_1:66924902-66924921 None:intergenic 45.0%
! GGTTTTCTTAGCTGCGTTGA+TGG - chr3_1:66925059-66925078 None:intergenic 45.0%
AAGAAAACCGAACACCACGA+CGG + chr3_1:66925070-66925089 Msa0369580:CDS 45.0%
AGAGAGAAGAAACGAAGCTC+CGG - chr3_1:66925176-66925195 None:intergenic 45.0%
AGCTTCGTTTCTTCTCTCTG+CGG + chr3_1:66925177-66925196 Msa0369580:CDS 45.0%
GGAGGAAGTGAAGAAGATAG+AGG + chr3_1:66925273-66925292 Msa0369580:CDS 45.0%
GGAAGTGAAGAAGATAGAGG+AGG + chr3_1:66925276-66925295 Msa0369580:CDS 45.0%
GTCGAGGATATACGATGCAA+CGG + chr3_1:66925309-66925328 Msa0369580:CDS 45.0%
ATATACGATGCAACGGCGAT+AGG + chr3_1:66925316-66925335 Msa0369580:CDS 45.0%
TTCTCTTTCCCTATCGCCAA+CGG - chr3_1:66925346-66925365 None:intergenic 45.0%
TTGGCGATAGGGAAAGAGAA+AGG + chr3_1:66925346-66925365 Msa0369580:CDS 45.0%
TGGCGATAGGGAAAGAGAAA+GGG + chr3_1:66925347-66925366 Msa0369580:CDS 45.0%
GGAAAGAGAAAGGGAAAGTG+TGG + chr3_1:66925356-66925375 Msa0369580:CDS 45.0%
! AGTTCCGGTTCGAGATGATA+AGG + chr3_1:66925426-66925445 Msa0369580:CDS 45.0%
! AGCTTTTCCTGCTGATCTTC+AGG + chr3_1:66925525-66925544 Msa0369580:CDS 45.0%
CAAGTGACATAGGGTGCATT+TGG - chr3_1:66925919-66925938 None:intergenic 45.0%
GAGTACCACAAGCAACAAGA+CGG - chr3_1:66926258-66926277 None:intergenic 45.0%
TAACCAACTTCACGCTGATG+AGG + chr3_1:66926774-66926793 Msa0369580:intron 45.0%
TTAAGGACTGTCCAAGCAGA+AGG + chr3_1:66926878-66926897 Msa0369580:CDS 45.0%
GTCCAAGCAGAAGGAATTAG+TGG + chr3_1:66926887-66926906 Msa0369580:CDS 45.0%
CACAACTATCAACATACCGG+TGG - chr3_1:66927125-66927144 None:intergenic 45.0%
! CTCTAGCTCCATATGTGACA+TGG - chr3_1:66927159-66927178 None:intergenic 45.0%
CATGTCACATATGGAGCTAG+AGG + chr3_1:66927157-66927176 Msa0369580:CDS 45.0%
ACATATGGAGCTAGAGGAAC+TGG + chr3_1:66927163-66927182 Msa0369580:CDS 45.0%
CATATGGAGCTAGAGGAACT+GGG + chr3_1:66927164-66927183 Msa0369580:CDS 45.0%
ATATGGAGCTAGAGGAACTG+GGG + chr3_1:66927165-66927184 Msa0369580:CDS 45.0%
GGCGAATGAACTGTCTTTCT+GGG - chr3_1:66927249-66927268 None:intergenic 45.0%
GAAATGGCCAACTAACCTGT+GGG - chr3_1:66927399-66927418 None:intergenic 45.0%
! GGGCAATGAGAGCACATAAA+GGG - chr3_1:66927484-66927503 None:intergenic 45.0%
! TGGGCAATGAGAGCACATAA+AGG - chr3_1:66927485-66927504 None:intergenic 45.0%
! TGTGCTCTCATTGCCCATTT+TGG + chr3_1:66927488-66927507 Msa0369580:intron 45.0%
! AGGGGGTATAATTGAGCCAT+CGG + chr3_1:66927762-66927781 Msa0369580:intron 45.0%
TATAATTGAGCCATCGGCAG+TGG + chr3_1:66927768-66927787 Msa0369580:intron 45.0%
AAACTAGTTACCACTGCCGA+TGG - chr3_1:66927781-66927800 None:intergenic 45.0%
TCTTGGTTTAGTATCACCGG+AGG + chr3_1:66927983-66928002 Msa0369580:CDS 45.0%
!! TGAGTGAGTTCTGAAAGCAG+AGG - chr3_1:66928041-66928060 None:intergenic 45.0%
!! GGTCTGGTTCTTCTTGATAC+AGG + chr3_1:66928136-66928155 Msa0369580:intron 45.0%
GGGTTTCAGGGAAAGATTGT+TGG + chr3_1:66928157-66928176 Msa0369580:intron 45.0%
GTTATTACGGACACTGTCAG+AGG + chr3_1:66928293-66928312 Msa0369580:CDS 45.0%
! CGCAATTGACTCATCAGCAT+AGG - chr3_1:66928375-66928394 None:intergenic 45.0%
GATTCCAATTTGTCCCCACT+GGG - chr3_1:66928463-66928482 None:intergenic 45.0%
AGATTCCAATTTGTCCCCAC+TGG - chr3_1:66928464-66928483 None:intergenic 45.0%
! TTTGGTGGTCTAAAACTCGC+TGG + chr3_1:66928509-66928528 Msa0369580:CDS 45.0%
AGATTGGACCCAGTTTCTGT+AGG + chr3_1:66928768-66928787 Msa0369580:intron 45.0%
GACCCAGTTTCTGTAGGAAA+TGG + chr3_1:66928774-66928793 Msa0369580:intron 45.0%
TCTTAGGACGCTCTTAGACA+AGG - chr3_1:66929988-66930007 None:intergenic 45.0%
AATTGCCTTAATGGCCAGGT+TGG + chr3_1:66930126-66930145 Msa0369580:intron 45.0%
AAATGCCAACCTGGCCATTA+AGG - chr3_1:66930134-66930153 None:intergenic 45.0%
! GCCAGGTTGGCATTTATCTT+CGG + chr3_1:66930139-66930158 Msa0369580:intron 45.0%
ACCGAAGATAAATGCCAACC+TGG - chr3_1:66930143-66930162 None:intergenic 45.0%
! GGTCTTTCTAACTTGCAGTC+CGG - chr3_1:66930764-66930783 None:intergenic 45.0%
! GGTCTTTGTAACTTGCAGTC+CGG - chr3_1:66930848-66930867 None:intergenic 45.0%
GAGCTGGTAAATAGGCACAA+AGG + chr3_1:66931022-66931041 Msa0369580:three_prime_UTR 45.0%
GGAGAAAGAAGCCTGAGCAT+TGG - chr3_1:66924903-66924922 None:intergenic 50.0%
TGAAAGTAAGTCACGTGCGG+CGG - chr3_1:66924932-66924951 None:intergenic 50.0%
CGGTGAAAGTAAGTCACGTG+CGG - chr3_1:66924935-66924954 None:intergenic 50.0%
! CGGCGGTGGAATATGAGTTT+TGG - chr3_1:66924984-66925003 None:intergenic 50.0%
! TGTCGGAGTTTTTCGTTCGG+CGG - chr3_1:66925001-66925020 None:intergenic 50.0%
! CGTTGATGGAGAGGTTGACA+CGG - chr3_1:66925045-66925064 None:intergenic 50.0%
! TCTTAGCTGCGTTGATGGAG+AGG - chr3_1:66925054-66925073 None:intergenic 50.0%
! GTTGTTTCCGTCGTGGTGTT+CGG - chr3_1:66925080-66925099 None:intergenic 50.0%
GAACACCACGACGGAAACAA+CGG + chr3_1:66925079-66925098 Msa0369580:CDS 50.0%
GTTCTACAGCACGAAGCAAC+CGG + chr3_1:66925119-66925138 Msa0369580:CDS 50.0%
!! GTTGATGGCACCGTTTCTAG+CGG + chr3_1:66925150-66925169 Msa0369580:CDS 50.0%
AGCAACGGTTATGAAACCGG+AGG + chr3_1:66925255-66925274 Msa0369580:CDS 50.0%
! AGGAGGAAGTGATAACGTCG+AGG + chr3_1:66925293-66925312 Msa0369580:CDS 50.0%
ATAGGTGAACCGTTGGCGAT+AGG + chr3_1:66925334-66925353 Msa0369580:CDS 50.0%
TAGGTGAACCGTTGGCGATA+GGG + chr3_1:66925335-66925354 Msa0369580:CDS 50.0%
GGGAGAAGCTGAACAAGTTC+CGG + chr3_1:66925411-66925430 Msa0369580:CDS 50.0%
AGTGGTTCCTGAAGATCAGC+AGG - chr3_1:66925535-66925554 None:intergenic 50.0%
CTCAAGGCGCAAGTGACATA+GGG - chr3_1:66925928-66925947 None:intergenic 50.0%
TCTCAAGGCGCAAGTGACAT+AGG - chr3_1:66925929-66925948 None:intergenic 50.0%
ACTTGACTGTCATGGCAGGA+TGG + chr3_1:66926138-66926157 Msa0369580:intron 50.0%
TCATACTCCTGCCATCGTTC+AGG - chr3_1:66926202-66926221 None:intergenic 50.0%
! GGAATCCGTCTTGTTGCTTG+TGG + chr3_1:66926250-66926269 Msa0369580:CDS 50.0%
TGCTTGTGGTACTCCACTGA+AGG + chr3_1:66926264-66926283 Msa0369580:CDS 50.0%
GATCCTCATCAGCGTGAAGT+TGG - chr3_1:66926780-66926799 None:intergenic 50.0%
GCCCACTAATTCCTTCTGCT+TGG - chr3_1:66926892-66926911 None:intergenic 50.0%
GCCTGATATGAAGCCTGAAC+CGG - chr3_1:66926951-66926970 None:intergenic 50.0%
TCTATCTGCACAGGCTAGAG+TGG + chr3_1:66927045-66927064 Msa0369580:CDS 50.0%
GGTGCAAGCCATGTCACATA+TGG + chr3_1:66927148-66927167 Msa0369580:CDS 50.0%
CGGCGAATGAACTGTCTTTC+TGG - chr3_1:66927250-66927269 None:intergenic 50.0%
AAGACAGTTCATTCGCCGTG+AGG + chr3_1:66927252-66927271 Msa0369580:CDS 50.0%
AGACAGTTCATTCGCCGTGA+GGG + chr3_1:66927253-66927272 Msa0369580:CDS 50.0%
CAACAGGAACTTCTCCCTCA+CGG - chr3_1:66927270-66927289 None:intergenic 50.0%
ATTTCTGCTACAGGGTCTGG+CGG - chr3_1:66927314-66927333 None:intergenic 50.0%
GCAATTTCTGCTACAGGGTC+TGG - chr3_1:66927317-66927336 None:intergenic 50.0%
! TTGACCGGGTTGAGATTGCT+CGG + chr3_1:66927338-66927357 Msa0369580:CDS 50.0%
TAACCCGAGCAATCTCAACC+CGG - chr3_1:66927345-66927364 None:intergenic 50.0%
CTCGGGTTATGAATGCTGCT+GGG + chr3_1:66927356-66927375 Msa0369580:CDS 50.0%
CGAAATGGCCAACTAACCTG+TGG - chr3_1:66927400-66927419 None:intergenic 50.0%
GCAGACACCATCCTGTCTAA+AGG - chr3_1:66927900-66927919 None:intergenic 50.0%
AGAACTCACTCACCGTTTCC+AGG + chr3_1:66928049-66928068 Msa0369580:CDS 50.0%
AGAACCCAGTGGGGACAAAT+TGG + chr3_1:66928456-66928475 Msa0369580:CDS 50.0%
TACAATCCTTCAGGGCTCAC+TGG + chr3_1:66929273-66929292 Msa0369580:intron 50.0%
GGCCAGTTGCAGACCTAAAT+TGG - chr3_1:66929485-66929504 None:intergenic 50.0%
GCAGATAATTGCTGGGGTTG+TGG + chr3_1:66929542-66929561 Msa0369580:intron 50.0%
CAATTCTTACTGGGGAACGC+AGG + chr3_1:66929638-66929657 Msa0369580:CDS 50.0%
GAATCTGATGTAGGTGGCTC+AGG - chr3_1:66930793-66930812 None:intergenic 50.0%
GAATCTGATGAAGGTGGCTC+AGG - chr3_1:66930877-66930896 None:intergenic 50.0%
GCTCAGGCTTCTTTCTCCAC+AGG + chr3_1:66924905-66924924 Msa0369580:CDS 55.0%
GAAAGTAAGTCACGTGCGGC+GGG - chr3_1:66924931-66924950 None:intergenic 55.0%
TGATGGAGAGGTTGACACGG+CGG - chr3_1:66925042-66925061 None:intergenic 55.0%
GGCGGAGGAGGAGAAGATAA+AGG + chr3_1:66925213-66925232 Msa0369580:CDS 55.0%
TACGGCGCCAGTTGAAGCAA+CGG + chr3_1:66925240-66925259 Msa0369580:CDS 55.0%
AACGGCGATAGGTGAACCGT+TGG + chr3_1:66925327-66925346 Msa0369580:CDS 55.0%
GACTGTCATGGCAGGATGGA+TGG + chr3_1:66926142-66926161 Msa0369580:intron 55.0%
TACTCCTGCCATCGTTCAGG+CGG - chr3_1:66926199-66926218 None:intergenic 55.0%
GATATGAAGCCTGAACCGGC+TGG - chr3_1:66926947-66926966 None:intergenic 55.0%
! GCCGGTTCAGGCTTCATATC+AGG + chr3_1:66926947-66926966 Msa0369580:CDS 55.0%
! TGACCGGGTTGAGATTGCTC+GGG + chr3_1:66927339-66927358 Msa0369580:CDS 55.0%
GCTCGGGTTATGAATGCTGC+TGG + chr3_1:66927355-66927374 Msa0369580:CDS 55.0%
TGAATGCTGCTGGGCAGAGA+CGG + chr3_1:66927365-66927384 Msa0369580:CDS 55.0%
ATGCCCTCCCACAGGTTAGT+TGG + chr3_1:66927389-66927408 Msa0369580:intron 55.0%
TGGCCAACTAACCTGTGGGA+GGG - chr3_1:66927395-66927414 None:intergenic 55.0%
ATGGCCAACTAACCTGTGGG+AGG - chr3_1:66927396-66927415 None:intergenic 55.0%
! GGTCTAAAACTCGCTGGCGT+TGG + chr3_1:66928515-66928534 Msa0369580:CDS 55.0%
CAGTATCCAGTGAGCCCTGA+AGG - chr3_1:66929282-66929301 None:intergenic 55.0%
TTGCTGGGGTTGTGGAGCAT+CGG + chr3_1:66929550-66929569 Msa0369580:CDS 55.0%
ATTGACCTCGCACGCTCTAC+CGG + chr3_1:66930742-66930761 Msa0369580:CDS 55.0%
TGTAGGTGGCTCAGGTGACT+CGG - chr3_1:66930785-66930804 None:intergenic 55.0%
TGAAGGTGGCTCAGGTGACT+CGG - chr3_1:66930869-66930888 None:intergenic 55.0%
! GGAAGGTACGGCACGTGAGA+CGG - chr3_1:66924963-66924982 None:intergenic 60.0%
! CGGAGTTTTTCGTTCGGCGG+TGG - chr3_1:66924998-66925017 None:intergenic 60.0%
GTTTGGCGGCGCGGAATTGT+CGG - chr3_1:66925018-66925037 None:intergenic 60.0%
!! CAACCGGCGAGGAGTGTTGA+TGG + chr3_1:66925135-66925154 Msa0369580:CDS 60.0%
GTGCCATCAACACTCCTCGC+CGG - chr3_1:66925141-66925160 None:intergenic 60.0%
!! ATGGCACCGTTTCTAGCGGC+CGG + chr3_1:66925154-66925173 Msa0369580:CDS 60.0%
GAAGCTCCGGCCGCTAGAAA+CGG - chr3_1:66925163-66925182 None:intergenic 60.0%
TTCTCTCTGCGGCGACGACA+AGG + chr3_1:66925188-66925207 Msa0369580:CDS 60.0%
TCTCTCTGCGGCGACGACAA+GGG + chr3_1:66925189-66925208 Msa0369580:CDS 60.0%
! TGCATTGGCCGCCTGAACGA+TGG + chr3_1:66926188-66926207 Msa0369580:CDS 60.0%
! TATGCACCTCCAGCCGGTTC+AGG + chr3_1:66926935-66926954 Msa0369580:CDS 60.0%
ATGAAGCCTGAACCGGCTGG+AGG - chr3_1:66926944-66926963 None:intergenic 60.0%
ATGCTTGATGGAGGGGCCAC+CGG + chr3_1:66927106-66927125 Msa0369580:CDS 60.0%
GAATGCTGCTGGGCAGAGAC+GGG + chr3_1:66927366-66927385 Msa0369580:CDS 60.0%
CGGCACGTGAGACGGTTACG+CGG - chr3_1:66924955-66924974 None:intergenic 65.0%
GTTGACACGGCGGCGTTTGG+CGG - chr3_1:66925032-66925051 None:intergenic 65.0%
GAGGTTGACACGGCGGCGTT+TGG - chr3_1:66925035-66925054 None:intergenic 65.0%
! CGACGCCGTTGTTTCCGTCG+TGG - chr3_1:66925087-66925106 None:intergenic 65.0%
ACAGCACGAAGCAACCGGCG+AGG + chr3_1:66925124-66925143 Msa0369580:CDS 65.0%
TTGGCCGCCTGAACGATGGC+AGG + chr3_1:66926192-66926211 Msa0369580:CDS 65.0%
CTCTGCGGCGACGACAAGGG+CGG + chr3_1:66925192-66925211 Msa0369580:CDS 70.0%
GAGACGGGATGCCCTCCCAC+AGG + chr3_1:66927381-66927400 Msa0369580:CDS 70.0%
GCAGTCCGGTAGAGCGTGCG+AGG - chr3_1:66930750-66930769 None:intergenic 70.0%
AGTCACGTGCGGCGGGCCTG+TGG - chr3_1:66924924-66924943 None:intergenic 75.0%
TGCGGCGACGACAAGGGCGG+CGG + chr3_1:66925195-66925214 Msa0369580:CDS 75.0%
GACGACAAGGGCGGCGGAGG+AGG + chr3_1:66925201-66925220 Msa0369580:CDS 75.0%
! CACGGCGGCGTTTGGCGGCG+CGG - chr3_1:66925027-66925046 None:intergenic 80.0%
! GGCGACGACAAGGGCGGCGG+AGG + chr3_1:66925198-66925217 Msa0369580:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 66924714 66931165 66924714 ID=Msa0369580;Name=Msa0369580
chr3_1 mRNA 66924714 66931165 66924714 ID=Msa0369580-mRNA-1;Parent=Msa0369580;Name=Msa0369580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=179|1|1|1|1|1|7|199|780
chr3_1 exon 66924714 66925575 66924714 ID=Msa0369580-mRNA-1:exon:13645;Parent=Msa0369580-mRNA-1
chr3_1 exon 66926156 66926285 66926156 ID=Msa0369580-mRNA-1:exon:13646;Parent=Msa0369580-mRNA-1
chr3_1 exon 66926875 66927402 66926875 ID=Msa0369580-mRNA-1:exon:13647;Parent=Msa0369580-mRNA-1
chr3_1 exon 66927963 66928070 66927963 ID=Msa0369580-mRNA-1:exon:13648;Parent=Msa0369580-mRNA-1
chr3_1 exon 66928158 66928706 66928158 ID=Msa0369580-mRNA-1:exon:13649;Parent=Msa0369580-mRNA-1
chr3_1 exon 66929546 66929659 66929546 ID=Msa0369580-mRNA-1:exon:13650;Parent=Msa0369580-mRNA-1
chr3_1 exon 66930736 66931165 66930736 ID=Msa0369580-mRNA-1:exon:13651;Parent=Msa0369580-mRNA-1
chr3_1 five_prime_UTR 66924714 66924892 66924714 ID=Msa0369580-mRNA-1:five_prime_utr;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66924893 66925575 66924893 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66926156 66926285 66926156 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66926875 66927402 66926875 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66927963 66928070 66927963 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66928158 66928706 66928158 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66929546 66929659 66929546 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 CDS 66930736 66930966 66930736 ID=Msa0369580-mRNA-1:cds;Parent=Msa0369580-mRNA-1
chr3_1 three_prime_UTR 66930967 66931165 66930967 ID=Msa0369580-mRNA-1:three_prime_utr;Parent=Msa0369580-mRNA-1
Gene Sequence

>Msa0369580

ATGAAGCCCAATGCTCAGGCTTCTTTCTCCACAGGCCCGCCGCACGTGACTTACTTTCACCGCGTAACCGTCTCACGTGCCGTACCTTCCAAAACTCATATTCCACCGCCGAACGAAAAACTCCGACAATTCCGCGCCGCCAAACGCCGCCGTGTCAACCTCTCCATCAACGCAGCTAAGAAAACCGAACACCACGACGGAAACAACGGCGTCGAGCGAACAGAATGTTCTACAGCACGAAGCAACCGGCGAGGAGTGTTGATGGCACCGTTTCTAGCGGCCGGAGCTTCGTTTCTTCTCTCTGCGGCGACGACAAGGGCGGCGGAGGAGGAGAAGATAAAGGAGAATACGGCGCCAGTTGAAGCAACGGTTATGAAACCGGAGGAAGTGAAGAAGATAGAGGAGGAAGTGATAACGTCGAGGATATACGATGCAACGGCGATAGGTGAACCGTTGGCGATAGGGAAAGAGAAAGGGAAAGTGTGGGAGAAGTTGATGAATGCTAGAGTTGTTTATTTGGGAGAAGCTGAACAAGTTCCGGTTCGAGATGATAAGGAATTGGAGCTTGAGATTGTTAAGAATTTGCATAAGCGTTGTGTTGATGTTGATAAGCGTTTATCTTTGGCTATTGAAGCTTTTCCTGCTGATCTTCAGGAACCACTTAATCAGTATATGGATAAAAAGATGGATGGAGAAACCTTGAAGTCTTATACAATGCATTGGCCGCCTGAACGATGGCAGGAGTATGAACCTATTCTTAGTTACTGTCGTGAAAATGGAATCCGTCTTGTTGCTTGTGGTACTCCACTGAAGATCTTAAGGACTGTCCAAGCAGAAGGAATTAGTGGGCTAACAAAGGCTGAACGTAAATTATATGCACCTCCAGCCGGTTCAGGCTTCATATCAGGCTTTTCTTCTATGTCACGTAGATATTCAGCTGACAGTACTCCAAATCTGTCGTTTCCTTTTGGTCCAAGCTCATATCTATCTGCACAGGCTAGAGTGGTTGACGAGTATACTATGTCCCAGACCATCTTGCAAAATATGCTTGATGGAGGGGCCACCGGTATGTTGATAGTTGTGACTGGTGCAAGCCATGTCACATATGGAGCTAGAGGAACTGGGGTGCCTGCAAGAATATCAAGAAAATTACAAAAGAAAAATCAAGTAGTTATATTACTTGACCCAGAAAGACAGTTCATTCGCCGTGAGGGAGAAGTTCCTGTTGCTGATTTTTTGTGGTATTCTGCCGCCAGACCCTGTAGCAGAAATTGCTTTGACCGGGTTGAGATTGCTCGGGTTATGAATGCTGCTGGGCAGAGACGGGATGCCCTCCCACAGGATCTTCAAAAGGGAATTGATCTTGGTTTAGTATCACCGGAGGTATTGCAGAACTTCTTTGATCTAGAGAAATATCCTCTGCTTTCAGAACTCACTCACCGTTTCCAGGGTTTCAGGGAAAGATTGTTGGCAGATCCCAAGTTCTTGCAAAGACTAGCAATAGAAGAAGGAATATCAGTAACAACTACATTATTAGCACAGTATCAGAAGCGGAAAGAAAACTTCTTTCAAGAGCTTGACTATGTTATTACGGACACTGTCAGAGGATCAGTTGTTGATTTCTTTACAGTGTGGCTTCCTGCACCAACTTTATCATTCCTTTCCTATGCTGATGAGTCAATTGCGCCTGATAACATTAGTTCTCTAATAGGACTTCTTGGCTCCATCCCTGACAATGCATTTCAAAAGAACCCAGTGGGGACAAATTGGAATCTCAATCATCGAATTGCATCAGTTGTATTTGGTGGTCTAAAACTCGCTGGCGTTGGATTTATTTCAAGTATTGGAGCTGTTGCTTCATCAAATTCTCTGTTTGCAGTTCGTAAGTTTCTTAATCCAGCAATCATCACTAACAAACAGATTGCAAGGTCACCGATACTCAAAACAGCAGTTGTTTATGCACTTTTTCTTGGAATATCTGCAAATCTCCGTTATCAGATAATTGCTGGGGTTGTGGAGCATCGGATTTCTGATCAGTTTGCTTCCCAAACATTTCTTGTAAATATGCTATCTTTTGTATCACGGACAATCAATTCTTACTGGGGAACGCAGCAATGGATTGACCTCGCACGCTCTACCGGACTGCAAGTTAGAAAGACCGAGTCACCTGAGCCACCTACATCAGATTCTCCAAATCAAGCTGCTATCTTATGCAACTCTACCGGACTGCAAGTTACAAAGACCGAGTCACCTGAGCCACCTTCATCAGATTCTCCAAATCAAGCTGCAATCTTATGCAACGAAGCAGAAGAAGCCAGCATTGATGAGATTAAAAGTGAATGA
Protein sequence

>Msa0369580

MKPNAQASFSTGPPHVTYFHRVTVSRAVPSKTHIPPPNEKLRQFRAAKRRRVNLSINAAKKTEHHDGNNGVERTECSTARSNRRGVLMAPFLAAGASFLLSAATTRAAEEEKIKENTAPVEATVMKPEEVKKIEEEVITSRIYDATAIGEPLAIGKEKGKVWEKLMNARVVYLGEAEQVPVRDDKELELEIVKNLHKRCVDVDKRLSLAIEAFPADLQEPLNQYMDKKMDGETLKSYTMHWPPERWQEYEPILSYCRENGIRLVACGTPLKILRTVQAEGISGLTKAERKLYAPPAGSGFISGFSSMSRRYSADSTPNLSFPFGPSSYLSAQARVVDEYTMSQTILQNMLDGGATGMLIVVTGASHVTYGARGTGVPARISRKLQKKNQVVILLDPERQFIRREGEVPVADFLWYSAARPCSRNCFDRVEIARVMNAAGQRRDALPQDLQKGIDLGLVSPEVLQNFFDLEKYPLLSELTHRFQGFRERLLADPKFLQRLAIEEGISVTTTLLAQYQKRKENFFQELDYVITDTVRGSVVDFFTVWLPAPTLSFLSYADESIAPDNISSLIGLLGSIPDNAFQKNPVGTNWNLNHRIASVVFGGLKLAGVGFISSIGAVASSNSLFAVRKFLNPAIITNKQIARSPILKTAVVYALFLGISANLRYQIIAGVVEHRISDQFASQTFLVNMLSFVSRTINSYWGTQQWIDLARSTGLQVRKTESPEPPTSDSPNQAAILCNSTGLQVTKTESPEPPSSDSPNQAAILCNEAEEASIDEIKSE*