AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340390


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340390 MtrunA17_Chr3g0114931 92.360 445 26 3 1 443 1 439 0.0 796
Msa1340390 MtrunA17_Chr3g0114921 54.343 449 187 9 1 439 1 441 1.69e-150 435
Msa1340390 MtrunA17_Chr3g0078481 63.610 349 122 4 96 443 36 380 1.85e-142 412
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340390 AT2G41705.3 50.824 425 194 7 25 440 37 455 6.27e-118 353
Msa1340390 AT2G41705.2 50.824 425 194 7 25 440 37 455 6.27e-118 353
Msa1340390 AT2G41705.4 50.824 425 194 7 25 440 37 455 6.27e-118 353
Msa1340390 AT2G41705.1 50.824 425 194 7 25 440 37 455 6.27e-118 353

Find 107 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGATCTGCCATCAAATA+TGG 0.217091 tig0004148:+2747 Msa1340390:CDS
AGGACTTCAATTTGGTCTAT+TGG 0.243981 tig0004148:+4340 Msa1340390:CDS
TGTCGATCATCATTGGTTTC+TGG 0.244597 tig0004148:+3709 Msa1340390:CDS
ATTAGGATCTTCGTGGGATT+TGG 0.260829 tig0004148:+4687 Msa1340390:three_prime_UTR
CCCATCTTTGTTTCAACAAA+TGG 0.261732 tig0004148:+2075 Msa1340390:CDS
TACCTATTTGTTTGGGTGTT+TGG 0.268786 tig0004148:+4536 Msa1340390:three_prime_UTR
TGGTGATATTAGCTTTGTTA+TGG 0.283155 tig0004148:+3859 Msa1340390:CDS
GCCTGCATTGTTGGACCTCT+TGG 0.293298 tig0004148:+3948 Msa1340390:CDS
AGACTTAACGAGTGCGAAAT+TGG 0.297010 tig0004148:+3999 Msa1340390:CDS
TGTTATTTAATCTAATCTTT+AGG 0.299381 tig0004148:+1655 Msa1340390:five_prime_UTR
TCATTTGGACCAAGTGGTTT+TGG 0.299453 tig0004148:+2697 Msa1340390:CDS
TGATAGAAAACAAGCATCTT+TGG 0.307803 tig0004148:+4408 Msa1340390:CDS
GGATTATGTACCTATTTGTT+TGG 0.307962 tig0004148:+4528 Msa1340390:three_prime_UTR
GGACTTCAATTTGGTCTATT+GGG 0.318154 tig0004148:+4341 Msa1340390:CDS
CTCACTCACATTCTTGAAAC+AGG 0.318173 tig0004148:-4500 None:intergenic
ACAATATAGTTATTATTAGA+TGG 0.318561 tig0004148:-2033 None:intergenic
TTATATATCAAACCAGAAAA+TGG 0.319807 tig0004148:+1970 Msa1340390:CDS
GTGATAACAGGACTTCAATT+TGG 0.320323 tig0004148:+4332 Msa1340390:CDS
TACTTATTGCAAAAGTCATT+TGG 0.339763 tig0004148:+2682 Msa1340390:CDS
GGTGATATTAGCTTTGTTAT+GGG 0.342133 tig0004148:+3860 Msa1340390:CDS
GATTATGTACCTATTTGTTT+GGG 0.342788 tig0004148:+4529 Msa1340390:three_prime_UTR
GGCAATTCATGTTCCATTGC+AGG 0.342935 tig0004148:-2009 None:intergenic
CACTGGATCTTGTCTTTGCT+CGG 0.345396 tig0004148:+3440 Msa1340390:CDS
ATCACTATGTTTCTTTCTAT+AGG 0.370649 tig0004148:-1708 None:intergenic
TGTTTCGTGTCTAACTCATT+TGG 0.377439 tig0004148:+2281 Msa1340390:CDS
TGAACTGCAAGATTCTTATT+CGG 0.379323 tig0004148:+4878 Msa1340390:three_prime_UTR
TTGTTGGACCTCTTGGTGTA+TGG 0.380313 tig0004148:+3955 Msa1340390:CDS
GAATTTGTTGGGTCTGAGTT+AGG 0.382110 tig0004148:+4611 Msa1340390:three_prime_UTR
GACCTCTTGGTGTATGGCTT+AGG 0.383143 tig0004148:+3961 Msa1340390:CDS
GGTCTAACAACCGGCTACTT+AGG 0.389772 tig0004148:+3359 Msa1340390:CDS
TCTTTGCTCGGCTTTGTACT+AGG 0.391256 tig0004148:+3452 Msa1340390:CDS
TCCATTTGTTGAAACAAAGA+TGG 0.393314 tig0004148:-2076 None:intergenic
AATTGTGATACTGTGATAAC+AGG 0.402053 tig0004148:+4320 Msa1340390:CDS
AGCCAAACACCCAAACAAAT+AGG 0.425540 tig0004148:-4538 None:intergenic
AAAACTTACTGATTTCTTGA+GGG 0.431062 tig0004148:-4102 None:intergenic
GTTGGGGTTCTGCAGTTAGC+AGG 0.434224 tig0004148:+1821 Msa1340390:CDS
CATGGAGCGAACGAGCAGTT+GGG 0.449685 tig0004148:+1804 Msa1340390:exon
GCCTAACAACTTTCAGCGGC+TGG 0.451556 tig0004148:+3384 Msa1340390:CDS
TCCAGCCGCTGAAAGTTGTT+AGG 0.453775 tig0004148:-3385 None:intergenic
TGACAGCTTCCCTCGTCAAT+TGG 0.455108 tig0004148:+3818 Msa1340390:CDS
CTGGTTTGATATATAAAGAC+AGG 0.458399 tig0004148:-1963 None:intergenic
GTAGCATTGTCGATCATCAT+TGG 0.460693 tig0004148:+3702 Msa1340390:CDS
TTGTGGTTAGCCTGCATTGT+TGG 0.460887 tig0004148:+3939 Msa1340390:CDS
ATGCTCGAGCTCAGTGTCGC+TGG 0.460917 tig0004148:+3416 Msa1340390:CDS
CGAAACAAATTCCAGTAGCT+TGG 0.472897 tig0004148:-2265 None:intergenic
GTCTAACAACCGGCTACTTA+GGG 0.474314 tig0004148:+3360 Msa1340390:CDS
CTAGCCATTGGTCTAACAAC+CGG 0.476478 tig0004148:+3350 Msa1340390:CDS
CAGAGGCGAACCATATTTGA+TGG 0.478725 tig0004148:-2757 None:intergenic
TTGTGAAGCAGTTCAACATC+AGG 0.482692 tig0004148:+4746 Msa1340390:three_prime_UTR
CCATTTGTTGAAACAAAGAT+GGG 0.483747 tig0004148:-2075 None:intergenic
AGCTCAGTGTCGCTGGACAC+TGG 0.485522 tig0004148:+3423 Msa1340390:CDS
ATGGGGTGTGAGTAGTGCTT+TGG 0.485675 tig0004148:+3878 Msa1340390:CDS
CATGAAGTTACCCAAGCTAC+TGG 0.489022 tig0004148:+2254 Msa1340390:CDS
TGTACAATAGTGAATTTGTT+GGG 0.492567 tig0004148:+4600 Msa1340390:three_prime_UTR
TTGGGTCTGAGTTAGGAAGT+TGG 0.493066 tig0004148:+4618 Msa1340390:three_prime_UTR
GAGAGCATTTGTCTATGCTA+TGG 0.494452 tig0004148:+4430 Msa1340390:CDS
CAAGAATGTGAGTGAGCATA+GGG 0.494592 tig0004148:+4507 Msa1340390:exon
AAAAGAAAATGAAACGCAAA+TGG 0.498184 tig0004148:-4456 None:intergenic
CCAACTGCTCGTTCGCTCCA+TGG 0.502807 tig0004148:-1803 None:intergenic
GAAACAAATTCCAGTAGCTT+GGG 0.506298 tig0004148:-2264 None:intergenic
CCATGGAGCGAACGAGCAGT+TGG 0.508369 tig0004148:+1803 Msa1340390:exon
CTTTGTTTCAACAAATGGAA+AGG 0.511711 tig0004148:+2080 Msa1340390:CDS
CATTGGTTTCTGGACGGCGA+AGG 0.512919 tig0004148:+3719 Msa1340390:CDS
GTGATATTAGCTTTGTTATG+GGG 0.520721 tig0004148:+3861 Msa1340390:CDS
GGTAGTGACGATAGTGTTGT+TGG 0.522919 tig0004148:+3839 Msa1340390:CDS
AACGAGTGCGAAATTGGAGG+AGG 0.526946 tig0004148:+4005 Msa1340390:CDS
GGAGGAAGGAAAAGTGAGAG+TGG 0.527956 tig0004148:+1931 Msa1340390:CDS
TTGTACAATAGTGAATTTGT+TGG 0.531782 tig0004148:+4599 Msa1340390:three_prime_UTR
CCATATTTGATGGCAGATCA+AGG 0.532230 tig0004148:-2747 None:intergenic
GACACATATTAGGATCTTCG+TGG 0.534243 tig0004148:+4680 Msa1340390:intron
ATTGGTTTCTGGACGGCGAA+GGG 0.538719 tig0004148:+3720 Msa1340390:CDS
TGTTTCTGCTGCTTGTATCA+CGG 0.540208 tig0004148:+4067 Msa1340390:CDS
GGACGGCGAAGGGATTCAAA+TGG 0.542568 tig0004148:+3730 Msa1340390:CDS
TATATCAAAACTAAACTGGA+AGG 0.543094 tig0004148:+3794 Msa1340390:CDS
TCAAGAATGTGAGTGAGCAT+AGG 0.546189 tig0004148:+4506 Msa1340390:exon
ACCAAGAGGTCCAACAATGC+AGG 0.546644 tig0004148:-3949 None:intergenic
CTGGTCACGCCAAAACCACT+TGG 0.550500 tig0004148:-2706 None:intergenic
CAAAAGTCATTTGGACCAAG+TGG 0.552223 tig0004148:+2691 Msa1340390:CDS
ACTTACTGATTTCTTGAGGG+TGG 0.554227 tig0004148:-4099 None:intergenic
CTGCAAGATTCTTATTCGGT+GGG 0.555202 tig0004148:+4882 Msa1340390:three_prime_UTR
TGTTAGGCTCCCTAAGTAGC+CGG 0.558390 tig0004148:-3369 None:intergenic
GTATCTGAACATCTAGCCAT+TGG 0.561646 tig0004148:+3338 Msa1340390:CDS
CAAATATTTCGCATTTGACA+CGG 0.574633 tig0004148:-4857 None:intergenic
GGAAGGAAAAGTGAGAGTGG+TGG 0.583294 tig0004148:+1934 Msa1340390:CDS
ACTGCAAGATTCTTATTCGG+TGG 0.587886 tig0004148:+4881 Msa1340390:three_prime_UTR
ACACATATTAGGATCTTCGT+GGG 0.592414 tig0004148:+4681 Msa1340390:intron
GATACAAGCAGCAGAAACAT+TGG 0.593081 tig0004148:-4063 None:intergenic
AAGATGGGGAGGTGTTCTTG+TGG 0.601171 tig0004148:-2060 None:intergenic
CTTAACGAGTGCGAAATTGG+AGG 0.610168 tig0004148:+4002 Msa1340390:CDS
ACGAGTGCGAAATTGGAGGA+GGG 0.618522 tig0004148:+4006 Msa1340390:CDS
ATTTGTGTACAATCCTGCAA+TGG 0.626316 tig0004148:+1996 Msa1340390:CDS
GGGAGCCTAACAACTTTCAG+CGG 0.627758 tig0004148:+3380 Msa1340390:CDS
ATGGAGCGAACGAGCAGTTG+GGG 0.627866 tig0004148:+1805 Msa1340390:CDS
AACCTAAGCCATACACCAAG+AGG 0.629036 tig0004148:-3963 None:intergenic
TTGTTGAAACAAAGATGGGG+AGG 0.633512 tig0004148:-2071 None:intergenic
GATCATCATTGGTTTCTGGA+CGG 0.641979 tig0004148:+3713 Msa1340390:CDS
GTAGCCGGTTGTTAGACCAA+TGG 0.643579 tig0004148:-3354 None:intergenic
CATTTGTTGAAACAAAGATG+GGG 0.646994 tig0004148:-2074 None:intergenic
GGCTAGATGTTCAGATACGT+AGG 0.652546 tig0004148:-3333 None:intergenic
TCACTCACATTCTTGAAACA+GGG 0.660582 tig0004148:-4499 None:intergenic
ATATAGTTATTATTAGATGG+CGG 0.673569 tig0004148:-2030 None:intergenic
GTGTGTCAAAATGTAGATGT+TGG 0.674681 tig0004148:+1850 Msa1340390:CDS
ATCGTCACTACCAATTGACG+AGG 0.676634 tig0004148:-3828 None:intergenic
GAAGCTGAGAATCGTGAGTG+TGG 0.687844 tig0004148:+1880 Msa1340390:CDS
TAAATATGCAGGTCTTAACG+AGG 0.700815 tig0004148:+2659 Msa1340390:intron
GTGGTGGTGAAGCTCAGTTG+TGG 0.736786 tig0004148:+3922 Msa1340390:CDS
TCGTCACTACCAATTGACGA+GGG 0.749970 tig0004148:-3827 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTTATTTAATCTAATCTTT+AGG + tig0004148:1655-1674 Msa1340390:five_prime_UTR 15.0%
!! ACAATATAGTTATTATTAGA+TGG - tig0004148:2036-2055 None:intergenic 15.0%
!! TATATCATTAACAACAAAAA+AGG - tig0004148:2150-2169 None:intergenic 15.0%
!!! TTTATTTCTTTGAATTCTAA+AGG + tig0004148:2798-2817 Msa1340390:intron 15.0%
!! ATAATTCCTAAGATTAAAAA+TGG + tig0004148:3038-3057 Msa1340390:intron 15.0%
!! TTTAATAAAATGCATTTGAT+AGG - tig0004148:3194-3213 None:intergenic 15.0%
!! TAATATTTCAAAATAGTCTA+TGG + tig0004148:4183-4202 Msa1340390:intron 15.0%
!!! TTGCTCTTTTTTATTTTAGA+AGG + tig0004148:1749-1768 Msa1340390:five_prime_UTR 20.0%
!!! AAGTTCTTATATATCTTTTG+AGG + tig0004148:1776-1795 Msa1340390:five_prime_UTR 20.0%
!! TTATATATCAAACCAGAAAA+TGG + tig0004148:1970-1989 Msa1340390:CDS 20.0%
!! ATATAGTTATTATTAGATGG+CGG - tig0004148:2033-2052 None:intergenic 20.0%
!!! ATGCTTTTACTTTGTTTTTT+AGG + tig0004148:2218-2237 Msa1340390:intron 20.0%
!! AAATAGAGAAAAAAAACTCA+AGG - tig0004148:2353-2372 None:intergenic 20.0%
!! AATTTCAACAACAAATTAGA+CGG + tig0004148:2463-2482 Msa1340390:intron 20.0%
!! ATGTGTTAAATTATGTTTAG+TGG + tig0004148:2500-2519 Msa1340390:intron 20.0%
!! TGATTAATGAATATAACTAG+TGG + tig0004148:2524-2543 Msa1340390:intron 20.0%
!! TGCATATTTATTATGACAAT+TGG - tig0004148:2649-2668 None:intergenic 20.0%
!! AATTGTCATAATAAATATGC+AGG + tig0004148:2648-2667 Msa1340390:intron 20.0%
!!! ATGTTAGTAAATTTAGAGTA+TGG + tig0004148:2861-2880 Msa1340390:intron 20.0%
!!! ATAGTTCCATTTTTAATCTT+AGG - tig0004148:3047-3066 None:intergenic 20.0%
!!! CTTTTATATCAAAACTAAAC+TGG + tig0004148:3790-3809 Msa1340390:CDS 20.0%
!! GAAATAAATGAGTTCAAAAA+TGG + tig0004148:3900-3919 Msa1340390:CDS 20.0%
!!! GATCTTCGTTTTTTTTTTTT+TGG + tig0004148:4658-4677 Msa1340390:intron 20.0%
!!! TTTTTTTTTGGACACATATT+AGG + tig0004148:4670-4689 Msa1340390:intron 20.0%
! ATCACTATGTTTCTTTCTAT+AGG - tig0004148:1711-1730 None:intergenic 25.0%
!!! TTACTTTGTTTTTTAGGTTC+TGG + tig0004148:2224-2243 Msa1340390:intron 25.0%
! TTTCTTGATGTTAAAGAGTA+TGG + tig0004148:2381-2400 Msa1340390:intron 25.0%
! GGAAATATGTTAAATGAGTT+TGG + tig0004148:2413-2432 Msa1340390:intron 25.0%
! TAATGAATATAACTAGTGGA+TGG + tig0004148:2528-2547 Msa1340390:intron 25.0%
! TACTTATTGCAAAAGTCATT+TGG + tig0004148:2682-2701 Msa1340390:CDS 25.0%
!! GAATTCTAAAGGAGAATAAA+AGG + tig0004148:2809-2828 Msa1340390:intron 25.0%
! TAAAAGGAGAAAAATAACCA+TGG + tig0004148:2825-2844 Msa1340390:intron 25.0%
! AAATAACCATGGTAGTTATA+AGG + tig0004148:2836-2855 Msa1340390:intron 25.0%
! TTATCATGATGACTAAATCT+TGG + tig0004148:2884-2903 Msa1340390:intron 25.0%
! AAAGCAATTCAAGTCTTTAT+TGG + tig0004148:2931-2950 Msa1340390:intron 25.0%
!!! ACTTCTATTTTTGCTTTCTT+AGG + tig0004148:3145-3164 Msa1340390:intron 25.0%
!!! TGGTTTGGTTTTGTTTTTAA+AGG + tig0004148:3302-3321 Msa1340390:CDS 25.0%
! CATATTAAGAAGAGTTTGTA+AGG + tig0004148:3652-3671 Msa1340390:intron 25.0%
! TATATCAAAACTAAACTGGA+AGG + tig0004148:3794-3813 Msa1340390:CDS 25.0%
! ATAAATGAGTTCAAAAATGG+TGG + tig0004148:3903-3922 Msa1340390:CDS 25.0%
!!! AAAACTTACTGATTTCTTGA+GGG - tig0004148:4105-4124 None:intergenic 25.0%
!!! AAAAACTTACTGATTTCTTG+AGG - tig0004148:4106-4125 None:intergenic 25.0%
!! GAATTTTTGACACATGATTT+TGG + tig0004148:4243-4262 Msa1340390:intron 25.0%
!! ATTGCTATAAACCTGATTTT+TGG + tig0004148:4280-4299 Msa1340390:intron 25.0%
! AAAAGAAAATGAAACGCAAA+TGG - tig0004148:4459-4478 None:intergenic 25.0%
!! ATTTGCGTTTCATTTTCTTT+TGG + tig0004148:4458-4477 Msa1340390:CDS 25.0%
!! TTTGCGTTTCATTTTCTTTT+GGG + tig0004148:4459-4478 Msa1340390:CDS 25.0%
! GATTATGTACCTATTTGTTT+GGG + tig0004148:4529-4548 Msa1340390:three_prime_UTR 25.0%
! TTGTACAATAGTGAATTTGT+TGG + tig0004148:4599-4618 Msa1340390:three_prime_UTR 25.0%
!! TGTACAATAGTGAATTTGTT+GGG + tig0004148:4600-4619 Msa1340390:three_prime_UTR 25.0%
! GTTGGAAGAGATATTATATT+AGG + tig0004148:4636-4655 Msa1340390:intron 25.0%
!! TTTCAATACATTTTTCGCTT+AGG + tig0004148:4928-4947 Msa1340390:three_prime_UTR 25.0%
!!! TTTTCGAGTTATTTTTCGGA+AGG + tig0004148:1621-1640 Msa1340390:five_prime_UTR 30.0%
! CTGGTTTGATATATAAAGAC+AGG - tig0004148:1966-1985 None:intergenic 30.0%
! TACACAAATGTTCCATTTTC+TGG - tig0004148:1985-2004 None:intergenic 30.0%
! CATTTGTTGAAACAAAGATG+GGG - tig0004148:2077-2096 None:intergenic 30.0%
! CCATTTGTTGAAACAAAGAT+GGG - tig0004148:2078-2097 None:intergenic 30.0%
! TCCATTTGTTGAAACAAAGA+TGG - tig0004148:2079-2098 None:intergenic 30.0%
! CTTTGTTTCAACAAATGGAA+AGG + tig0004148:2080-2099 Msa1340390:CDS 30.0%
TGTGAAGACATAAAACAAGT+AGG + tig0004148:2108-2127 Msa1340390:intron 30.0%
! AAATTGTACTAGTTTCCTCA+CGG + tig0004148:2188-2207 Msa1340390:intron 30.0%
ACATAACCTTATAACTACCA+TGG - tig0004148:2845-2864 None:intergenic 30.0%
!! ACTTGAATTGCTTTTCAATC+AGG - tig0004148:2925-2944 None:intergenic 30.0%
TTGCTTTCTTAGGATCAATA+TGG + tig0004148:3155-3174 Msa1340390:intron 30.0%
! CTTTTACACATTTTCCAGAT+TGG + tig0004148:3263-3282 Msa1340390:intron 30.0%
!!! CAGATTGGTTCCTTTTTTAT+GGG + tig0004148:3278-3297 Msa1340390:intron 30.0%
ATAAGTGCGATTTAAAGACT+AGG + tig0004148:3477-3496 Msa1340390:intron 30.0%
! TCTAATCTCATTTTACAGCA+TGG - tig0004148:3599-3618 None:intergenic 30.0%
AAGAAGAGTTTGTAAGGAAA+TGG + tig0004148:3658-3677 Msa1340390:intron 30.0%
! GTAAGGAAATGGAATTTTGT+AGG + tig0004148:3669-3688 Msa1340390:intron 30.0%
!! TGGTGATATTAGCTTTGTTA+TGG + tig0004148:3859-3878 Msa1340390:CDS 30.0%
!! GGTGATATTAGCTTTGTTAT+GGG + tig0004148:3860-3879 Msa1340390:CDS 30.0%
!! GTGATATTAGCTTTGTTATG+GGG + tig0004148:3861-3880 Msa1340390:CDS 30.0%
!!! TTTTTGAAATGGCTTCGATT+TGG + tig0004148:4029-4048 Msa1340390:CDS 30.0%
!!! TTTTGAAATGGCTTCGATTT+GGG + tig0004148:4030-4049 Msa1340390:CDS 30.0%
! TTTTTGACACATGATTTTGG+AGG + tig0004148:4246-4265 Msa1340390:intron 30.0%
AATTGTGATACTGTGATAAC+AGG + tig0004148:4320-4339 Msa1340390:CDS 30.0%
TGATAGAAAACAAGCATCTT+TGG + tig0004148:4408-4427 Msa1340390:CDS 30.0%
GGATTATGTACCTATTTGTT+TGG + tig0004148:4528-4547 Msa1340390:three_prime_UTR 30.0%
CAAATATTTCGCATTTGACA+CGG - tig0004148:4860-4879 None:intergenic 30.0%
TGAACTGCAAGATTCTTATT+CGG + tig0004148:4878-4897 Msa1340390:three_prime_UTR 30.0%
! CATTTTTCGCTTAGGAAAAA+AGG + tig0004148:4936-4955 Msa1340390:three_prime_UTR 30.0%
GTGTGTCAAAATGTAGATGT+TGG + tig0004148:1850-1869 Msa1340390:CDS 35.0%
! GCAAGAGATATAGCTTTTCA+AGG + tig0004148:1910-1929 Msa1340390:CDS 35.0%
!! AGAGATATAGCTTTTCAAGG+AGG + tig0004148:1913-1932 Msa1340390:CDS 35.0%
!! ATATAGCTTTTCAAGGAGGA+AGG + tig0004148:1917-1936 Msa1340390:CDS 35.0%
ATTTGTGTACAATCCTGCAA+TGG + tig0004148:1996-2015 Msa1340390:CDS 35.0%
! CCCATCTTTGTTTCAACAAA+TGG + tig0004148:2075-2094 Msa1340390:CDS 35.0%
GAAACAAATTCCAGTAGCTT+GGG - tig0004148:2267-2286 None:intergenic 35.0%
TGTTTCGTGTCTAACTCATT+TGG + tig0004148:2281-2300 Msa1340390:CDS 35.0%
!! CTAACTCATTTGGCTGTTTT+TGG + tig0004148:2291-2310 Msa1340390:CDS 35.0%
GAAAAAAAACTCAAGGTCAC+AGG - tig0004148:2346-2365 None:intergenic 35.0%
! TAAAGAGTATGGTAGATGCT+AGG + tig0004148:2392-2411 Msa1340390:intron 35.0%
CTACTCGACGCAATTAAATT+AGG + tig0004148:2587-2606 Msa1340390:intron 35.0%
TAAATATGCAGGTCTTAACG+AGG + tig0004148:2659-2678 Msa1340390:intron 35.0%
GTAAAAAACGGTATGATCAC+TGG - tig0004148:2728-2747 None:intergenic 35.0%
TGGCAGATCAAGGTAAAAAA+CGG - tig0004148:2740-2759 None:intergenic 35.0%
GCTGCATTAACTAACATGTT+TGG + tig0004148:2958-2977 Msa1340390:intron 35.0%
AAAATGGAACTATCTGTTCC+AGG + tig0004148:3054-3073 Msa1340390:intron 35.0%
CCATAAAAAAGGAACCAATC+TGG - tig0004148:3280-3299 None:intergenic 35.0%
!!! CCAGATTGGTTCCTTTTTTA+TGG + tig0004148:3277-3296 Msa1340390:intron 35.0%
!!! TTGGTTCCTTTTTTATGGGA+TGG + tig0004148:3282-3301 Msa1340390:CDS 35.0%
!!! TCCTTTTTTATGGGATGGTT+TGG + tig0004148:3287-3306 Msa1340390:CDS 35.0%
ACCAAACCATCCCATAAAAA+AGG - tig0004148:3291-3310 None:intergenic 35.0%
AATGAGTTCAAAAATGGTGG+TGG + tig0004148:3906-3925 Msa1340390:CDS 35.0%
!!! ATAAACCTGATTTTTGGTGC+AGG + tig0004148:4286-4305 Msa1340390:intron 35.0%
GTGATAACAGGACTTCAATT+TGG + tig0004148:4332-4351 Msa1340390:CDS 35.0%
AGGACTTCAATTTGGTCTAT+TGG + tig0004148:4340-4359 Msa1340390:CDS 35.0%
GGACTTCAATTTGGTCTATT+GGG + tig0004148:4341-4360 Msa1340390:CDS 35.0%
TCACTCACATTCTTGAAACA+GGG - tig0004148:4502-4521 None:intergenic 35.0%
TACCTATTTGTTTGGGTGTT+TGG + tig0004148:4536-4555 Msa1340390:three_prime_UTR 35.0%
!! AAGTTTTATCATGTGTGCTC+TGG + tig0004148:4576-4595 Msa1340390:three_prime_UTR 35.0%
ACACATATTAGGATCTTCGT+GGG + tig0004148:4681-4700 Msa1340390:intron 35.0%
!! ATCAATTGTTTTGCATTGCG+CGG + tig0004148:4834-4853 Msa1340390:three_prime_UTR 35.0%
!! ATATCTTTTGAGGATCGCCA+TGG + tig0004148:1786-1805 Msa1340390:exon 40.0%
TTGTTGAAACAAAGATGGGG+AGG - tig0004148:2074-2093 None:intergenic 40.0%
CGAAACAAATTCCAGTAGCT+TGG - tig0004148:2268-2287 None:intergenic 40.0%
!!! TTGGCTGTTTTTGGCATTCT+TGG + tig0004148:2300-2319 Msa1340390:CDS 40.0%
!!! TGGCTGTTTTTGGCATTCTT+GGG + tig0004148:2301-2320 Msa1340390:CDS 40.0%
TGCGTCGAGTAGATGATTAA+TGG - tig0004148:2579-2598 None:intergenic 40.0%
CGACGCAATTAAATTAGGAG+AGG + tig0004148:2592-2611 Msa1340390:intron 40.0%
CAAAAGTCATTTGGACCAAG+TGG + tig0004148:2691-2710 Msa1340390:CDS 40.0%
! TCATTTGGACCAAGTGGTTT+TGG + tig0004148:2697-2716 Msa1340390:CDS 40.0%
! CCATATTTGATGGCAGATCA+AGG - tig0004148:2750-2769 None:intergenic 40.0%
CCTTGATCTGCCATCAAATA+TGG + tig0004148:2747-2766 Msa1340390:CDS 40.0%
CTAAGAATCAGTGAATGCAG+AGG - tig0004148:2777-2796 None:intergenic 40.0%
AATGCTTCAAGCTCAAAACC+TGG - tig0004148:3075-3094 None:intergenic 40.0%
GTATCTGAACATCTAGCCAT+TGG + tig0004148:3338-3357 Msa1340390:CDS 40.0%
GTAGCATTGTCGATCATCAT+TGG + tig0004148:3702-3721 Msa1340390:CDS 40.0%
!! TGTCGATCATCATTGGTTTC+TGG + tig0004148:3709-3728 Msa1340390:CDS 40.0%
!! GATCATCATTGGTTTCTGGA+CGG + tig0004148:3713-3732 Msa1340390:CDS 40.0%
AGACTTAACGAGTGCGAAAT+TGG + tig0004148:3999-4018 Msa1340390:CDS 40.0%
!! TTGGAGGAGGGTTTTTGAAA+TGG + tig0004148:4018-4037 Msa1340390:CDS 40.0%
GATACAAGCAGCAGAAACAT+TGG - tig0004148:4066-4085 None:intergenic 40.0%
! TGTTTCTGCTGCTTGTATCA+CGG + tig0004148:4067-4086 Msa1340390:CDS 40.0%
!! ACTTACTGATTTCTTGAGGG+TGG - tig0004148:4102-4121 None:intergenic 40.0%
ATTCACCTGCACCAAAAATC+AGG - tig0004148:4294-4313 None:intergenic 40.0%
!! GAGAGCATTTGTCTATGCTA+TGG + tig0004148:4430-4449 Msa1340390:CDS 40.0%
CTCACTCACATTCTTGAAAC+AGG - tig0004148:4503-4522 None:intergenic 40.0%
TCAAGAATGTGAGTGAGCAT+AGG + tig0004148:4506-4525 Msa1340390:exon 40.0%
CAAGAATGTGAGTGAGCATA+GGG + tig0004148:4507-4526 Msa1340390:exon 40.0%
AGCCAAACACCCAAACAAAT+AGG - tig0004148:4541-4560 None:intergenic 40.0%
!! GAATTTGTTGGGTCTGAGTT+AGG + tig0004148:4611-4630 Msa1340390:three_prime_UTR 40.0%
GACACATATTAGGATCTTCG+TGG + tig0004148:4680-4699 Msa1340390:intron 40.0%
ATTAGGATCTTCGTGGGATT+TGG + tig0004148:4687-4706 Msa1340390:three_prime_UTR 40.0%
TTGTGAAGCAGTTCAACATC+AGG + tig0004148:4746-4765 Msa1340390:three_prime_UTR 40.0%
ACTGCAAGATTCTTATTCGG+TGG + tig0004148:4881-4900 Msa1340390:three_prime_UTR 40.0%
CTGCAAGATTCTTATTCGGT+GGG + tig0004148:4882-4901 Msa1340390:three_prime_UTR 40.0%
GGCAATTCATGTTCCATTGC+AGG - tig0004148:2012-2031 None:intergenic 45.0%
! TACTAGTTTCCTCACGGTTG+AGG + tig0004148:2194-2213 Msa1340390:intron 45.0%
CATGAAGTTACCCAAGCTAC+TGG + tig0004148:2254-2273 Msa1340390:CDS 45.0%
!!! GGCTGTTTTTGGCATTCTTG+GGG + tig0004148:2302-2321 Msa1340390:CDS 45.0%
CAGAGGCGAACCATATTTGA+TGG - tig0004148:2760-2779 None:intergenic 45.0%
GGCTAGATGTTCAGATACGT+AGG - tig0004148:3336-3355 None:intergenic 45.0%
! CTAGCCATTGGTCTAACAAC+CGG + tig0004148:3350-3369 Msa1340390:CDS 45.0%
GTCTAACAACCGGCTACTTA+GGG + tig0004148:3360-3379 Msa1340390:CDS 45.0%
CACTGGATCTTGTCTTTGCT+CGG + tig0004148:3440-3459 Msa1340390:CDS 45.0%
! TCTTTGCTCGGCTTTGTACT+AGG + tig0004148:3452-3471 Msa1340390:CDS 45.0%
TCGTCACTACCAATTGACGA+GGG - tig0004148:3830-3849 None:intergenic 45.0%
ATCGTCACTACCAATTGACG+AGG - tig0004148:3831-3850 None:intergenic 45.0%
GGTAGTGACGATAGTGTTGT+TGG + tig0004148:3839-3858 Msa1340390:CDS 45.0%
!! TTGTGGTTAGCCTGCATTGT+TGG + tig0004148:3939-3958 Msa1340390:CDS 45.0%
! TTGTTGGACCTCTTGGTGTA+TGG + tig0004148:3955-3974 Msa1340390:CDS 45.0%
AACCTAAGCCATACACCAAG+AGG - tig0004148:3966-3985 None:intergenic 45.0%
CTTAACGAGTGCGAAATTGG+AGG + tig0004148:4002-4021 Msa1340390:CDS 45.0%
TTGGGTCTGAGTTAGGAAGT+TGG + tig0004148:4618-4637 Msa1340390:three_prime_UTR 45.0%
GAAGCTGAGAATCGTGAGTG+TGG + tig0004148:1880-1899 Msa1340390:CDS 50.0%
GGAGGAAGGAAAAGTGAGAG+TGG + tig0004148:1931-1950 Msa1340390:CDS 50.0%
GGAAGGAAAAGTGAGAGTGG+TGG + tig0004148:1934-1953 Msa1340390:CDS 50.0%
!! AAGATGGGGAGGTGTTCTTG+TGG - tig0004148:2063-2082 None:intergenic 50.0%
! AAAAGCATGCCTCAACCGTG+AGG - tig0004148:2206-2225 None:intergenic 50.0%
GTAGCCGGTTGTTAGACCAA+TGG - tig0004148:3357-3376 None:intergenic 50.0%
GGTCTAACAACCGGCTACTT+AGG + tig0004148:3359-3378 Msa1340390:CDS 50.0%
TGTTAGGCTCCCTAAGTAGC+CGG - tig0004148:3372-3391 None:intergenic 50.0%
GGGAGCCTAACAACTTTCAG+CGG + tig0004148:3380-3399 Msa1340390:CDS 50.0%
TCCAGCCGCTGAAAGTTGTT+AGG - tig0004148:3388-3407 None:intergenic 50.0%
! ATTGGTTTCTGGACGGCGAA+GGG + tig0004148:3720-3739 Msa1340390:CDS 50.0%
TGACAGCTTCCCTCGTCAAT+TGG + tig0004148:3818-3837 Msa1340390:CDS 50.0%
ATGGGGTGTGAGTAGTGCTT+TGG + tig0004148:3878-3897 Msa1340390:CDS 50.0%
ACCAAGAGGTCCAACAATGC+AGG - tig0004148:3952-3971 None:intergenic 50.0%
! GACCTCTTGGTGTATGGCTT+AGG + tig0004148:3961-3980 Msa1340390:CDS 50.0%
AACGAGTGCGAAATTGGAGG+AGG + tig0004148:4005-4024 Msa1340390:CDS 50.0%
ACGAGTGCGAAATTGGAGGA+GGG + tig0004148:4006-4025 Msa1340390:CDS 50.0%
CATGGAGCGAACGAGCAGTT+GGG + tig0004148:1804-1823 Msa1340390:exon 55.0%
ATGGAGCGAACGAGCAGTTG+GGG + tig0004148:1805-1824 Msa1340390:CDS 55.0%
GTTGGGGTTCTGCAGTTAGC+AGG + tig0004148:1821-1840 Msa1340390:CDS 55.0%
CTGGTCACGCCAAAACCACT+TGG - tig0004148:2709-2728 None:intergenic 55.0%
GCCTAACAACTTTCAGCGGC+TGG + tig0004148:3384-3403 Msa1340390:CDS 55.0%
!! CATTGGTTTCTGGACGGCGA+AGG + tig0004148:3719-3738 Msa1340390:CDS 55.0%
GGACGGCGAAGGGATTCAAA+TGG + tig0004148:3730-3749 Msa1340390:CDS 55.0%
! GTGGTGGTGAAGCTCAGTTG+TGG + tig0004148:3922-3941 Msa1340390:CDS 55.0%
GCCTGCATTGTTGGACCTCT+TGG + tig0004148:3948-3967 Msa1340390:CDS 55.0%
CCAACTGCTCGTTCGCTCCA+TGG - tig0004148:1806-1825 None:intergenic 60.0%
CCATGGAGCGAACGAGCAGT+TGG + tig0004148:1803-1822 Msa1340390:exon 60.0%
ATGCTCGAGCTCAGTGTCGC+TGG + tig0004148:3416-3435 Msa1340390:CDS 60.0%
! AGCTCAGTGTCGCTGGACAC+TGG + tig0004148:3423-3442 Msa1340390:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0004148 gene 1618 4970 1618 ID=Msa1340390;Name=Msa1340390
tig0004148 mRNA 1618 4970 1618 ID=Msa1340390-mRNA-1;Parent=Msa1340390;Name=Msa1340390-mRNA-1;_AED=0.32;_eAED=0.32;_QI=187|1|1|1|0.83|0.71|7|419|443
tig0004148 exon 1618 2125 1618 ID=Msa1340390-mRNA-1:exon:2634;Parent=Msa1340390-mRNA-1
tig0004148 exon 2240 2323 2240 ID=Msa1340390-mRNA-1:exon:2635;Parent=Msa1340390-mRNA-1
tig0004148 exon 2670 2768 2670 ID=Msa1340390-mRNA-1:exon:2636;Parent=Msa1340390-mRNA-1
tig0004148 exon 3281 3473 3281 ID=Msa1340390-mRNA-1:exon:2637;Parent=Msa1340390-mRNA-1
tig0004148 exon 3691 4115 3691 ID=Msa1340390-mRNA-1:exon:2638;Parent=Msa1340390-mRNA-1
tig0004148 exon 4308 4652 4308 ID=Msa1340390-mRNA-1:exon:2639;Parent=Msa1340390-mRNA-1
tig0004148 exon 4687 4970 4687 ID=Msa1340390-mRNA-1:exon:2640;Parent=Msa1340390-mRNA-1
tig0004148 five_prime_UTR 1618 1804 1618 ID=Msa1340390-mRNA-1:five_prime_utr;Parent=Msa1340390-mRNA-1
tig0004148 CDS 1805 2125 1805 ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1
tig0004148 CDS 2240 2323 2240 ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1
tig0004148 CDS 2670 2768 2670 ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1
tig0004148 CDS 3281 3473 3281 ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1
tig0004148 CDS 3691 4115 3691 ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1
tig0004148 CDS 4308 4517 4308 ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1
tig0004148 three_prime_UTR 4518 4652 4518 ID=Msa1340390-mRNA-1:three_prime_utr;Parent=Msa1340390-mRNA-1
tig0004148 three_prime_UTR 4687 4970 4687 ID=Msa1340390-mRNA-1:three_prime_utr;Parent=Msa1340390-mRNA-1
Gene Sequence

>Msa1340390

ATGGAGCGAACGAGCAGTTGGGGTTCTGCAGTTAGCAGGCTTTCAGTGTGTCAAAATGTAGATGTTGGTGATGATGAAGCTGAGAATCGTGAGTGTGGTTCAGCTGCAAGAGATATAGCTTTTCAAGGAGGAAGGAAAAGTGAGAGTGGTGGCTTTGACCTGTCTTTATATATCAAACCAGAAAATGGAACATTTGTGTACAATCCTGCAATGGAACATGAATTGCCGCCATCTAATAATAACTATATTGTAAATCCACAAGAACACCTCCCCATCTTTGTTTCAACAAATGGAAAGGTTAATTGTGAAGACATAAAACAAGTTCTGGAACTTGACATGAAGTTACCCAAGCTACTGGAATTTGTTTCGTGTCTAACTCATTTGGCTGTTTTTGGCATTCTTGGGGTCTTAACGAGGTACTTATTGCAAAAGTCATTTGGACCAAGTGGTTTTGGCGTGACCAGTGATCATACCGTTTTTTACCTTGATCTGCCATCAAATATGATTGGTTCCTTTTTTATGGGATGGTTTGGTTTTGTTTTTAAAGGAGATATATCCTACGTATCTGAACATCTAGCCATTGGTCTAACAACCGGCTACTTAGGGAGCCTAACAACTTTCAGCGGCTGGAATCAGAAAATGCTCGAGCTCAGTGTCGCTGGACACTGGATCTTGTCTTTGCTCGGCTTTGTACTAGGCATGTTTCTTGTAGCATTGTCGATCATCATTGGTTTCTGGACGGCGAAGGGATTCAAATGGTTACTCAAAAGACTAAACATGAGACATGAAAGTGACTCTTTTATATCAAAACTAAACTGGAAGGTTGACAGCTTCCCTCGTCAATTGGTAGTGACGATAGTGTTGTTGGTGATATTAGCTTTGTTATGGGGTGTGAGTAGTGCTTTGGAAATAAATGAGTTCAAAAATGGTGGTGGTGAAGCTCAGTTGTGGTTAGCCTGCATTGTTGGACCTCTTGGTGTATGGCTTAGGTTTTTCTTAGCTACTAGACTTAACGAGTGCGAAATTGGAGGAGGGTTTTTGAAATGGCTTCGATTTGGGACTCTTATTGCCAATGTTTCTGCTGCTTGTATCACGGCTGCACTTGCCACCCTCAAGAAATCAGTGAATACTACAAATTGTGATACTGTGATAACAGGACTTCAATTTGGTCTATTGGGATGTCTGAGTACTGTTTCAACATTTGTTGCTGAATTGTATGAACTGATAGAAAACAAGCATCTTTGGAGAGCATTTGTCTATGCTATGGTTACCATTTGCGTTTCATTTTCTTTTGGGATCTTATTATACTATATCCCTGTTTCAAGAATGTGA

Protein sequence

>Msa1340390

MERTSSWGSAVSRLSVCQNVDVGDDEAENRECGSAARDIAFQGGRKSESGGFDLSLYIKPENGTFVYNPAMEHELPPSNNNYIVNPQEHLPIFVSTNGKVNCEDIKQVLELDMKLPKLLEFVSCLTHLAVFGILGVLTRYLLQKSFGPSGFGVTSDHTVFYLDLPSNMIGSFFMGWFGFVFKGDISYVSEHLAIGLTTGYLGSLTTFSGWNQKMLELSVAGHWILSLLGFVLGMFLVALSIIIGFWTAKGFKWLLKRLNMRHESDSFISKLNWKVDSFPRQLVVTIVLLVILALLWGVSSALEINEFKNGGGEAQLWLACIVGPLGVWLRFFLATRLNECEIGGGFLKWLRFGTLIANVSAACITAALATLKKSVNTTNCDTVITGLQFGLLGCLSTVSTFVAELYELIENKHLWRAFVYAMVTICVSFSFGILLYYIPVSRM*