Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1340390 | XP_003601083.1 | 93.034 | 445 | 28 | 2 | 1 | 443 | 1 | 444 | 0.0 | 808 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1340390 | G7J3K0 | 93.034 | 445 | 28 | 2 | 1 | 443 | 1 | 444 | 0.0 | 808 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa1340390 | 0.802627 | 5.127687e-49 | -8.615850e-47 |
Msa0657970 | Msa1340390 | 0.812364 | 4.399240e-51 | -8.615850e-47 |
Msa0130570 | Msa1340390 | 0.805599 | 1.234978e-49 | -8.615850e-47 |
Msa0157290 | Msa1340390 | 0.803162 | 3.976737e-49 | -8.615850e-47 |
Msa0197660 | Msa1340390 | 0.811432 | 7.020844e-51 | -8.615850e-47 |
Msa0203030 | Msa1340390 | 0.812123 | 4.966499e-51 | -8.615850e-47 |
Msa1228190 | Msa1340390 | 0.807291 | 5.430375e-50 | -8.615850e-47 |
Msa1303250 | Msa1340390 | 0.812121 | 4.971179e-51 | -8.615850e-47 |
Msa1340390 | Msa1374550 | 0.800603 | 1.334015e-48 | -8.615850e-47 |
Msa0370030 | Msa1340390 | 0.851770 | 7.146432e-61 | -8.615850e-47 |
Msa0417440 | Msa1340390 | 0.821204 | 4.571087e-53 | -8.615850e-47 |
Msa0239800 | Msa1340390 | 0.806020 | 1.007671e-49 | -8.615850e-47 |
Msa0317510 | Msa1340390 | 0.815404 | 9.408748e-52 | -8.615850e-47 |
Msa0322830 | Msa1340390 | 0.807393 | 5.167070e-50 | -8.615850e-47 |
Msa0509790 | Msa1340390 | 0.861219 | 1.196549e-63 | -8.615850e-47 |
Msa0843220 | Msa1340390 | 0.805618 | 1.223465e-49 | -8.615850e-47 |
Msa0880140 | Msa1340390 | 0.801835 | 7.463726e-49 | -8.615850e-47 |
Msa0946210 | Msa1340390 | 0.818898 | 1.541486e-52 | -8.615850e-47 |
Msa0979510 | Msa1340390 | 0.801459 | 8.916666e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1340390 | MtrunA17_Chr3g0114931 | 92.360 | 445 | 26 | 3 | 1 | 443 | 1 | 439 | 0.0 | 796 |
Msa1340390 | MtrunA17_Chr3g0114921 | 54.343 | 449 | 187 | 9 | 1 | 439 | 1 | 441 | 1.69e-150 | 435 |
Msa1340390 | MtrunA17_Chr3g0078481 | 63.610 | 349 | 122 | 4 | 96 | 443 | 36 | 380 | 1.85e-142 | 412 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1340390 | AT2G41705.3 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.27e-118 | 353 |
Msa1340390 | AT2G41705.2 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.27e-118 | 353 |
Msa1340390 | AT2G41705.4 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.27e-118 | 353 |
Msa1340390 | AT2G41705.1 | 50.824 | 425 | 194 | 7 | 25 | 440 | 37 | 455 | 6.27e-118 | 353 |
Find 107 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCTTGATCTGCCATCAAATA+TGG | 0.217091 | tig0004148:+2747 | Msa1340390:CDS |
AGGACTTCAATTTGGTCTAT+TGG | 0.243981 | tig0004148:+4340 | Msa1340390:CDS |
TGTCGATCATCATTGGTTTC+TGG | 0.244597 | tig0004148:+3709 | Msa1340390:CDS |
ATTAGGATCTTCGTGGGATT+TGG | 0.260829 | tig0004148:+4687 | Msa1340390:three_prime_UTR |
CCCATCTTTGTTTCAACAAA+TGG | 0.261732 | tig0004148:+2075 | Msa1340390:CDS |
TACCTATTTGTTTGGGTGTT+TGG | 0.268786 | tig0004148:+4536 | Msa1340390:three_prime_UTR |
TGGTGATATTAGCTTTGTTA+TGG | 0.283155 | tig0004148:+3859 | Msa1340390:CDS |
GCCTGCATTGTTGGACCTCT+TGG | 0.293298 | tig0004148:+3948 | Msa1340390:CDS |
AGACTTAACGAGTGCGAAAT+TGG | 0.297010 | tig0004148:+3999 | Msa1340390:CDS |
TGTTATTTAATCTAATCTTT+AGG | 0.299381 | tig0004148:+1655 | Msa1340390:five_prime_UTR |
TCATTTGGACCAAGTGGTTT+TGG | 0.299453 | tig0004148:+2697 | Msa1340390:CDS |
TGATAGAAAACAAGCATCTT+TGG | 0.307803 | tig0004148:+4408 | Msa1340390:CDS |
GGATTATGTACCTATTTGTT+TGG | 0.307962 | tig0004148:+4528 | Msa1340390:three_prime_UTR |
GGACTTCAATTTGGTCTATT+GGG | 0.318154 | tig0004148:+4341 | Msa1340390:CDS |
CTCACTCACATTCTTGAAAC+AGG | 0.318173 | tig0004148:-4500 | None:intergenic |
ACAATATAGTTATTATTAGA+TGG | 0.318561 | tig0004148:-2033 | None:intergenic |
TTATATATCAAACCAGAAAA+TGG | 0.319807 | tig0004148:+1970 | Msa1340390:CDS |
GTGATAACAGGACTTCAATT+TGG | 0.320323 | tig0004148:+4332 | Msa1340390:CDS |
TACTTATTGCAAAAGTCATT+TGG | 0.339763 | tig0004148:+2682 | Msa1340390:CDS |
GGTGATATTAGCTTTGTTAT+GGG | 0.342133 | tig0004148:+3860 | Msa1340390:CDS |
GATTATGTACCTATTTGTTT+GGG | 0.342788 | tig0004148:+4529 | Msa1340390:three_prime_UTR |
GGCAATTCATGTTCCATTGC+AGG | 0.342935 | tig0004148:-2009 | None:intergenic |
CACTGGATCTTGTCTTTGCT+CGG | 0.345396 | tig0004148:+3440 | Msa1340390:CDS |
ATCACTATGTTTCTTTCTAT+AGG | 0.370649 | tig0004148:-1708 | None:intergenic |
TGTTTCGTGTCTAACTCATT+TGG | 0.377439 | tig0004148:+2281 | Msa1340390:CDS |
TGAACTGCAAGATTCTTATT+CGG | 0.379323 | tig0004148:+4878 | Msa1340390:three_prime_UTR |
TTGTTGGACCTCTTGGTGTA+TGG | 0.380313 | tig0004148:+3955 | Msa1340390:CDS |
GAATTTGTTGGGTCTGAGTT+AGG | 0.382110 | tig0004148:+4611 | Msa1340390:three_prime_UTR |
GACCTCTTGGTGTATGGCTT+AGG | 0.383143 | tig0004148:+3961 | Msa1340390:CDS |
GGTCTAACAACCGGCTACTT+AGG | 0.389772 | tig0004148:+3359 | Msa1340390:CDS |
TCTTTGCTCGGCTTTGTACT+AGG | 0.391256 | tig0004148:+3452 | Msa1340390:CDS |
TCCATTTGTTGAAACAAAGA+TGG | 0.393314 | tig0004148:-2076 | None:intergenic |
AATTGTGATACTGTGATAAC+AGG | 0.402053 | tig0004148:+4320 | Msa1340390:CDS |
AGCCAAACACCCAAACAAAT+AGG | 0.425540 | tig0004148:-4538 | None:intergenic |
AAAACTTACTGATTTCTTGA+GGG | 0.431062 | tig0004148:-4102 | None:intergenic |
GTTGGGGTTCTGCAGTTAGC+AGG | 0.434224 | tig0004148:+1821 | Msa1340390:CDS |
CATGGAGCGAACGAGCAGTT+GGG | 0.449685 | tig0004148:+1804 | Msa1340390:exon |
GCCTAACAACTTTCAGCGGC+TGG | 0.451556 | tig0004148:+3384 | Msa1340390:CDS |
TCCAGCCGCTGAAAGTTGTT+AGG | 0.453775 | tig0004148:-3385 | None:intergenic |
TGACAGCTTCCCTCGTCAAT+TGG | 0.455108 | tig0004148:+3818 | Msa1340390:CDS |
CTGGTTTGATATATAAAGAC+AGG | 0.458399 | tig0004148:-1963 | None:intergenic |
GTAGCATTGTCGATCATCAT+TGG | 0.460693 | tig0004148:+3702 | Msa1340390:CDS |
TTGTGGTTAGCCTGCATTGT+TGG | 0.460887 | tig0004148:+3939 | Msa1340390:CDS |
ATGCTCGAGCTCAGTGTCGC+TGG | 0.460917 | tig0004148:+3416 | Msa1340390:CDS |
CGAAACAAATTCCAGTAGCT+TGG | 0.472897 | tig0004148:-2265 | None:intergenic |
GTCTAACAACCGGCTACTTA+GGG | 0.474314 | tig0004148:+3360 | Msa1340390:CDS |
CTAGCCATTGGTCTAACAAC+CGG | 0.476478 | tig0004148:+3350 | Msa1340390:CDS |
CAGAGGCGAACCATATTTGA+TGG | 0.478725 | tig0004148:-2757 | None:intergenic |
TTGTGAAGCAGTTCAACATC+AGG | 0.482692 | tig0004148:+4746 | Msa1340390:three_prime_UTR |
CCATTTGTTGAAACAAAGAT+GGG | 0.483747 | tig0004148:-2075 | None:intergenic |
AGCTCAGTGTCGCTGGACAC+TGG | 0.485522 | tig0004148:+3423 | Msa1340390:CDS |
ATGGGGTGTGAGTAGTGCTT+TGG | 0.485675 | tig0004148:+3878 | Msa1340390:CDS |
CATGAAGTTACCCAAGCTAC+TGG | 0.489022 | tig0004148:+2254 | Msa1340390:CDS |
TGTACAATAGTGAATTTGTT+GGG | 0.492567 | tig0004148:+4600 | Msa1340390:three_prime_UTR |
TTGGGTCTGAGTTAGGAAGT+TGG | 0.493066 | tig0004148:+4618 | Msa1340390:three_prime_UTR |
GAGAGCATTTGTCTATGCTA+TGG | 0.494452 | tig0004148:+4430 | Msa1340390:CDS |
CAAGAATGTGAGTGAGCATA+GGG | 0.494592 | tig0004148:+4507 | Msa1340390:exon |
AAAAGAAAATGAAACGCAAA+TGG | 0.498184 | tig0004148:-4456 | None:intergenic |
CCAACTGCTCGTTCGCTCCA+TGG | 0.502807 | tig0004148:-1803 | None:intergenic |
GAAACAAATTCCAGTAGCTT+GGG | 0.506298 | tig0004148:-2264 | None:intergenic |
CCATGGAGCGAACGAGCAGT+TGG | 0.508369 | tig0004148:+1803 | Msa1340390:exon |
CTTTGTTTCAACAAATGGAA+AGG | 0.511711 | tig0004148:+2080 | Msa1340390:CDS |
CATTGGTTTCTGGACGGCGA+AGG | 0.512919 | tig0004148:+3719 | Msa1340390:CDS |
GTGATATTAGCTTTGTTATG+GGG | 0.520721 | tig0004148:+3861 | Msa1340390:CDS |
GGTAGTGACGATAGTGTTGT+TGG | 0.522919 | tig0004148:+3839 | Msa1340390:CDS |
AACGAGTGCGAAATTGGAGG+AGG | 0.526946 | tig0004148:+4005 | Msa1340390:CDS |
GGAGGAAGGAAAAGTGAGAG+TGG | 0.527956 | tig0004148:+1931 | Msa1340390:CDS |
TTGTACAATAGTGAATTTGT+TGG | 0.531782 | tig0004148:+4599 | Msa1340390:three_prime_UTR |
CCATATTTGATGGCAGATCA+AGG | 0.532230 | tig0004148:-2747 | None:intergenic |
GACACATATTAGGATCTTCG+TGG | 0.534243 | tig0004148:+4680 | Msa1340390:intron |
ATTGGTTTCTGGACGGCGAA+GGG | 0.538719 | tig0004148:+3720 | Msa1340390:CDS |
TGTTTCTGCTGCTTGTATCA+CGG | 0.540208 | tig0004148:+4067 | Msa1340390:CDS |
GGACGGCGAAGGGATTCAAA+TGG | 0.542568 | tig0004148:+3730 | Msa1340390:CDS |
TATATCAAAACTAAACTGGA+AGG | 0.543094 | tig0004148:+3794 | Msa1340390:CDS |
TCAAGAATGTGAGTGAGCAT+AGG | 0.546189 | tig0004148:+4506 | Msa1340390:exon |
ACCAAGAGGTCCAACAATGC+AGG | 0.546644 | tig0004148:-3949 | None:intergenic |
CTGGTCACGCCAAAACCACT+TGG | 0.550500 | tig0004148:-2706 | None:intergenic |
CAAAAGTCATTTGGACCAAG+TGG | 0.552223 | tig0004148:+2691 | Msa1340390:CDS |
ACTTACTGATTTCTTGAGGG+TGG | 0.554227 | tig0004148:-4099 | None:intergenic |
CTGCAAGATTCTTATTCGGT+GGG | 0.555202 | tig0004148:+4882 | Msa1340390:three_prime_UTR |
TGTTAGGCTCCCTAAGTAGC+CGG | 0.558390 | tig0004148:-3369 | None:intergenic |
GTATCTGAACATCTAGCCAT+TGG | 0.561646 | tig0004148:+3338 | Msa1340390:CDS |
CAAATATTTCGCATTTGACA+CGG | 0.574633 | tig0004148:-4857 | None:intergenic |
GGAAGGAAAAGTGAGAGTGG+TGG | 0.583294 | tig0004148:+1934 | Msa1340390:CDS |
ACTGCAAGATTCTTATTCGG+TGG | 0.587886 | tig0004148:+4881 | Msa1340390:three_prime_UTR |
ACACATATTAGGATCTTCGT+GGG | 0.592414 | tig0004148:+4681 | Msa1340390:intron |
GATACAAGCAGCAGAAACAT+TGG | 0.593081 | tig0004148:-4063 | None:intergenic |
AAGATGGGGAGGTGTTCTTG+TGG | 0.601171 | tig0004148:-2060 | None:intergenic |
CTTAACGAGTGCGAAATTGG+AGG | 0.610168 | tig0004148:+4002 | Msa1340390:CDS |
ACGAGTGCGAAATTGGAGGA+GGG | 0.618522 | tig0004148:+4006 | Msa1340390:CDS |
ATTTGTGTACAATCCTGCAA+TGG | 0.626316 | tig0004148:+1996 | Msa1340390:CDS |
GGGAGCCTAACAACTTTCAG+CGG | 0.627758 | tig0004148:+3380 | Msa1340390:CDS |
ATGGAGCGAACGAGCAGTTG+GGG | 0.627866 | tig0004148:+1805 | Msa1340390:CDS |
AACCTAAGCCATACACCAAG+AGG | 0.629036 | tig0004148:-3963 | None:intergenic |
TTGTTGAAACAAAGATGGGG+AGG | 0.633512 | tig0004148:-2071 | None:intergenic |
GATCATCATTGGTTTCTGGA+CGG | 0.641979 | tig0004148:+3713 | Msa1340390:CDS |
GTAGCCGGTTGTTAGACCAA+TGG | 0.643579 | tig0004148:-3354 | None:intergenic |
CATTTGTTGAAACAAAGATG+GGG | 0.646994 | tig0004148:-2074 | None:intergenic |
GGCTAGATGTTCAGATACGT+AGG | 0.652546 | tig0004148:-3333 | None:intergenic |
TCACTCACATTCTTGAAACA+GGG | 0.660582 | tig0004148:-4499 | None:intergenic |
ATATAGTTATTATTAGATGG+CGG | 0.673569 | tig0004148:-2030 | None:intergenic |
GTGTGTCAAAATGTAGATGT+TGG | 0.674681 | tig0004148:+1850 | Msa1340390:CDS |
ATCGTCACTACCAATTGACG+AGG | 0.676634 | tig0004148:-3828 | None:intergenic |
GAAGCTGAGAATCGTGAGTG+TGG | 0.687844 | tig0004148:+1880 | Msa1340390:CDS |
TAAATATGCAGGTCTTAACG+AGG | 0.700815 | tig0004148:+2659 | Msa1340390:intron |
GTGGTGGTGAAGCTCAGTTG+TGG | 0.736786 | tig0004148:+3922 | Msa1340390:CDS |
TCGTCACTACCAATTGACGA+GGG | 0.749970 | tig0004148:-3827 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTATTTAATCTAATCTTT+AGG | + | tig0004148:1655-1674 | Msa1340390:five_prime_UTR | 15.0% |
!! | ACAATATAGTTATTATTAGA+TGG | - | tig0004148:2036-2055 | None:intergenic | 15.0% |
!! | TATATCATTAACAACAAAAA+AGG | - | tig0004148:2150-2169 | None:intergenic | 15.0% |
!!! | TTTATTTCTTTGAATTCTAA+AGG | + | tig0004148:2798-2817 | Msa1340390:intron | 15.0% |
!! | ATAATTCCTAAGATTAAAAA+TGG | + | tig0004148:3038-3057 | Msa1340390:intron | 15.0% |
!! | TTTAATAAAATGCATTTGAT+AGG | - | tig0004148:3194-3213 | None:intergenic | 15.0% |
!! | TAATATTTCAAAATAGTCTA+TGG | + | tig0004148:4183-4202 | Msa1340390:intron | 15.0% |
!!! | TTGCTCTTTTTTATTTTAGA+AGG | + | tig0004148:1749-1768 | Msa1340390:five_prime_UTR | 20.0% |
!!! | AAGTTCTTATATATCTTTTG+AGG | + | tig0004148:1776-1795 | Msa1340390:five_prime_UTR | 20.0% |
!! | TTATATATCAAACCAGAAAA+TGG | + | tig0004148:1970-1989 | Msa1340390:CDS | 20.0% |
!! | ATATAGTTATTATTAGATGG+CGG | - | tig0004148:2033-2052 | None:intergenic | 20.0% |
!!! | ATGCTTTTACTTTGTTTTTT+AGG | + | tig0004148:2218-2237 | Msa1340390:intron | 20.0% |
!! | AAATAGAGAAAAAAAACTCA+AGG | - | tig0004148:2353-2372 | None:intergenic | 20.0% |
!! | AATTTCAACAACAAATTAGA+CGG | + | tig0004148:2463-2482 | Msa1340390:intron | 20.0% |
!! | ATGTGTTAAATTATGTTTAG+TGG | + | tig0004148:2500-2519 | Msa1340390:intron | 20.0% |
!! | TGATTAATGAATATAACTAG+TGG | + | tig0004148:2524-2543 | Msa1340390:intron | 20.0% |
!! | TGCATATTTATTATGACAAT+TGG | - | tig0004148:2649-2668 | None:intergenic | 20.0% |
!! | AATTGTCATAATAAATATGC+AGG | + | tig0004148:2648-2667 | Msa1340390:intron | 20.0% |
!!! | ATGTTAGTAAATTTAGAGTA+TGG | + | tig0004148:2861-2880 | Msa1340390:intron | 20.0% |
!!! | ATAGTTCCATTTTTAATCTT+AGG | - | tig0004148:3047-3066 | None:intergenic | 20.0% |
!!! | CTTTTATATCAAAACTAAAC+TGG | + | tig0004148:3790-3809 | Msa1340390:CDS | 20.0% |
!! | GAAATAAATGAGTTCAAAAA+TGG | + | tig0004148:3900-3919 | Msa1340390:CDS | 20.0% |
!!! | GATCTTCGTTTTTTTTTTTT+TGG | + | tig0004148:4658-4677 | Msa1340390:intron | 20.0% |
!!! | TTTTTTTTTGGACACATATT+AGG | + | tig0004148:4670-4689 | Msa1340390:intron | 20.0% |
! | ATCACTATGTTTCTTTCTAT+AGG | - | tig0004148:1711-1730 | None:intergenic | 25.0% |
!!! | TTACTTTGTTTTTTAGGTTC+TGG | + | tig0004148:2224-2243 | Msa1340390:intron | 25.0% |
! | TTTCTTGATGTTAAAGAGTA+TGG | + | tig0004148:2381-2400 | Msa1340390:intron | 25.0% |
! | GGAAATATGTTAAATGAGTT+TGG | + | tig0004148:2413-2432 | Msa1340390:intron | 25.0% |
! | TAATGAATATAACTAGTGGA+TGG | + | tig0004148:2528-2547 | Msa1340390:intron | 25.0% |
! | TACTTATTGCAAAAGTCATT+TGG | + | tig0004148:2682-2701 | Msa1340390:CDS | 25.0% |
!! | GAATTCTAAAGGAGAATAAA+AGG | + | tig0004148:2809-2828 | Msa1340390:intron | 25.0% |
! | TAAAAGGAGAAAAATAACCA+TGG | + | tig0004148:2825-2844 | Msa1340390:intron | 25.0% |
! | AAATAACCATGGTAGTTATA+AGG | + | tig0004148:2836-2855 | Msa1340390:intron | 25.0% |
! | TTATCATGATGACTAAATCT+TGG | + | tig0004148:2884-2903 | Msa1340390:intron | 25.0% |
! | AAAGCAATTCAAGTCTTTAT+TGG | + | tig0004148:2931-2950 | Msa1340390:intron | 25.0% |
!!! | ACTTCTATTTTTGCTTTCTT+AGG | + | tig0004148:3145-3164 | Msa1340390:intron | 25.0% |
!!! | TGGTTTGGTTTTGTTTTTAA+AGG | + | tig0004148:3302-3321 | Msa1340390:CDS | 25.0% |
! | CATATTAAGAAGAGTTTGTA+AGG | + | tig0004148:3652-3671 | Msa1340390:intron | 25.0% |
! | TATATCAAAACTAAACTGGA+AGG | + | tig0004148:3794-3813 | Msa1340390:CDS | 25.0% |
! | ATAAATGAGTTCAAAAATGG+TGG | + | tig0004148:3903-3922 | Msa1340390:CDS | 25.0% |
!!! | AAAACTTACTGATTTCTTGA+GGG | - | tig0004148:4105-4124 | None:intergenic | 25.0% |
!!! | AAAAACTTACTGATTTCTTG+AGG | - | tig0004148:4106-4125 | None:intergenic | 25.0% |
!! | GAATTTTTGACACATGATTT+TGG | + | tig0004148:4243-4262 | Msa1340390:intron | 25.0% |
!! | ATTGCTATAAACCTGATTTT+TGG | + | tig0004148:4280-4299 | Msa1340390:intron | 25.0% |
! | AAAAGAAAATGAAACGCAAA+TGG | - | tig0004148:4459-4478 | None:intergenic | 25.0% |
!! | ATTTGCGTTTCATTTTCTTT+TGG | + | tig0004148:4458-4477 | Msa1340390:CDS | 25.0% |
!! | TTTGCGTTTCATTTTCTTTT+GGG | + | tig0004148:4459-4478 | Msa1340390:CDS | 25.0% |
! | GATTATGTACCTATTTGTTT+GGG | + | tig0004148:4529-4548 | Msa1340390:three_prime_UTR | 25.0% |
! | TTGTACAATAGTGAATTTGT+TGG | + | tig0004148:4599-4618 | Msa1340390:three_prime_UTR | 25.0% |
!! | TGTACAATAGTGAATTTGTT+GGG | + | tig0004148:4600-4619 | Msa1340390:three_prime_UTR | 25.0% |
! | GTTGGAAGAGATATTATATT+AGG | + | tig0004148:4636-4655 | Msa1340390:intron | 25.0% |
!! | TTTCAATACATTTTTCGCTT+AGG | + | tig0004148:4928-4947 | Msa1340390:three_prime_UTR | 25.0% |
!!! | TTTTCGAGTTATTTTTCGGA+AGG | + | tig0004148:1621-1640 | Msa1340390:five_prime_UTR | 30.0% |
! | CTGGTTTGATATATAAAGAC+AGG | - | tig0004148:1966-1985 | None:intergenic | 30.0% |
! | TACACAAATGTTCCATTTTC+TGG | - | tig0004148:1985-2004 | None:intergenic | 30.0% |
! | CATTTGTTGAAACAAAGATG+GGG | - | tig0004148:2077-2096 | None:intergenic | 30.0% |
! | CCATTTGTTGAAACAAAGAT+GGG | - | tig0004148:2078-2097 | None:intergenic | 30.0% |
! | TCCATTTGTTGAAACAAAGA+TGG | - | tig0004148:2079-2098 | None:intergenic | 30.0% |
! | CTTTGTTTCAACAAATGGAA+AGG | + | tig0004148:2080-2099 | Msa1340390:CDS | 30.0% |
TGTGAAGACATAAAACAAGT+AGG | + | tig0004148:2108-2127 | Msa1340390:intron | 30.0% | |
! | AAATTGTACTAGTTTCCTCA+CGG | + | tig0004148:2188-2207 | Msa1340390:intron | 30.0% |
ACATAACCTTATAACTACCA+TGG | - | tig0004148:2845-2864 | None:intergenic | 30.0% | |
!! | ACTTGAATTGCTTTTCAATC+AGG | - | tig0004148:2925-2944 | None:intergenic | 30.0% |
TTGCTTTCTTAGGATCAATA+TGG | + | tig0004148:3155-3174 | Msa1340390:intron | 30.0% | |
! | CTTTTACACATTTTCCAGAT+TGG | + | tig0004148:3263-3282 | Msa1340390:intron | 30.0% |
!!! | CAGATTGGTTCCTTTTTTAT+GGG | + | tig0004148:3278-3297 | Msa1340390:intron | 30.0% |
ATAAGTGCGATTTAAAGACT+AGG | + | tig0004148:3477-3496 | Msa1340390:intron | 30.0% | |
! | TCTAATCTCATTTTACAGCA+TGG | - | tig0004148:3599-3618 | None:intergenic | 30.0% |
AAGAAGAGTTTGTAAGGAAA+TGG | + | tig0004148:3658-3677 | Msa1340390:intron | 30.0% | |
! | GTAAGGAAATGGAATTTTGT+AGG | + | tig0004148:3669-3688 | Msa1340390:intron | 30.0% |
!! | TGGTGATATTAGCTTTGTTA+TGG | + | tig0004148:3859-3878 | Msa1340390:CDS | 30.0% |
!! | GGTGATATTAGCTTTGTTAT+GGG | + | tig0004148:3860-3879 | Msa1340390:CDS | 30.0% |
!! | GTGATATTAGCTTTGTTATG+GGG | + | tig0004148:3861-3880 | Msa1340390:CDS | 30.0% |
!!! | TTTTTGAAATGGCTTCGATT+TGG | + | tig0004148:4029-4048 | Msa1340390:CDS | 30.0% |
!!! | TTTTGAAATGGCTTCGATTT+GGG | + | tig0004148:4030-4049 | Msa1340390:CDS | 30.0% |
! | TTTTTGACACATGATTTTGG+AGG | + | tig0004148:4246-4265 | Msa1340390:intron | 30.0% |
AATTGTGATACTGTGATAAC+AGG | + | tig0004148:4320-4339 | Msa1340390:CDS | 30.0% | |
TGATAGAAAACAAGCATCTT+TGG | + | tig0004148:4408-4427 | Msa1340390:CDS | 30.0% | |
GGATTATGTACCTATTTGTT+TGG | + | tig0004148:4528-4547 | Msa1340390:three_prime_UTR | 30.0% | |
CAAATATTTCGCATTTGACA+CGG | - | tig0004148:4860-4879 | None:intergenic | 30.0% | |
TGAACTGCAAGATTCTTATT+CGG | + | tig0004148:4878-4897 | Msa1340390:three_prime_UTR | 30.0% | |
! | CATTTTTCGCTTAGGAAAAA+AGG | + | tig0004148:4936-4955 | Msa1340390:three_prime_UTR | 30.0% |
GTGTGTCAAAATGTAGATGT+TGG | + | tig0004148:1850-1869 | Msa1340390:CDS | 35.0% | |
! | GCAAGAGATATAGCTTTTCA+AGG | + | tig0004148:1910-1929 | Msa1340390:CDS | 35.0% |
!! | AGAGATATAGCTTTTCAAGG+AGG | + | tig0004148:1913-1932 | Msa1340390:CDS | 35.0% |
!! | ATATAGCTTTTCAAGGAGGA+AGG | + | tig0004148:1917-1936 | Msa1340390:CDS | 35.0% |
ATTTGTGTACAATCCTGCAA+TGG | + | tig0004148:1996-2015 | Msa1340390:CDS | 35.0% | |
! | CCCATCTTTGTTTCAACAAA+TGG | + | tig0004148:2075-2094 | Msa1340390:CDS | 35.0% |
GAAACAAATTCCAGTAGCTT+GGG | - | tig0004148:2267-2286 | None:intergenic | 35.0% | |
TGTTTCGTGTCTAACTCATT+TGG | + | tig0004148:2281-2300 | Msa1340390:CDS | 35.0% | |
!! | CTAACTCATTTGGCTGTTTT+TGG | + | tig0004148:2291-2310 | Msa1340390:CDS | 35.0% |
GAAAAAAAACTCAAGGTCAC+AGG | - | tig0004148:2346-2365 | None:intergenic | 35.0% | |
! | TAAAGAGTATGGTAGATGCT+AGG | + | tig0004148:2392-2411 | Msa1340390:intron | 35.0% |
CTACTCGACGCAATTAAATT+AGG | + | tig0004148:2587-2606 | Msa1340390:intron | 35.0% | |
TAAATATGCAGGTCTTAACG+AGG | + | tig0004148:2659-2678 | Msa1340390:intron | 35.0% | |
GTAAAAAACGGTATGATCAC+TGG | - | tig0004148:2728-2747 | None:intergenic | 35.0% | |
TGGCAGATCAAGGTAAAAAA+CGG | - | tig0004148:2740-2759 | None:intergenic | 35.0% | |
GCTGCATTAACTAACATGTT+TGG | + | tig0004148:2958-2977 | Msa1340390:intron | 35.0% | |
AAAATGGAACTATCTGTTCC+AGG | + | tig0004148:3054-3073 | Msa1340390:intron | 35.0% | |
CCATAAAAAAGGAACCAATC+TGG | - | tig0004148:3280-3299 | None:intergenic | 35.0% | |
!!! | CCAGATTGGTTCCTTTTTTA+TGG | + | tig0004148:3277-3296 | Msa1340390:intron | 35.0% |
!!! | TTGGTTCCTTTTTTATGGGA+TGG | + | tig0004148:3282-3301 | Msa1340390:CDS | 35.0% |
!!! | TCCTTTTTTATGGGATGGTT+TGG | + | tig0004148:3287-3306 | Msa1340390:CDS | 35.0% |
ACCAAACCATCCCATAAAAA+AGG | - | tig0004148:3291-3310 | None:intergenic | 35.0% | |
AATGAGTTCAAAAATGGTGG+TGG | + | tig0004148:3906-3925 | Msa1340390:CDS | 35.0% | |
!!! | ATAAACCTGATTTTTGGTGC+AGG | + | tig0004148:4286-4305 | Msa1340390:intron | 35.0% |
GTGATAACAGGACTTCAATT+TGG | + | tig0004148:4332-4351 | Msa1340390:CDS | 35.0% | |
AGGACTTCAATTTGGTCTAT+TGG | + | tig0004148:4340-4359 | Msa1340390:CDS | 35.0% | |
GGACTTCAATTTGGTCTATT+GGG | + | tig0004148:4341-4360 | Msa1340390:CDS | 35.0% | |
TCACTCACATTCTTGAAACA+GGG | - | tig0004148:4502-4521 | None:intergenic | 35.0% | |
TACCTATTTGTTTGGGTGTT+TGG | + | tig0004148:4536-4555 | Msa1340390:three_prime_UTR | 35.0% | |
!! | AAGTTTTATCATGTGTGCTC+TGG | + | tig0004148:4576-4595 | Msa1340390:three_prime_UTR | 35.0% |
ACACATATTAGGATCTTCGT+GGG | + | tig0004148:4681-4700 | Msa1340390:intron | 35.0% | |
!! | ATCAATTGTTTTGCATTGCG+CGG | + | tig0004148:4834-4853 | Msa1340390:three_prime_UTR | 35.0% |
!! | ATATCTTTTGAGGATCGCCA+TGG | + | tig0004148:1786-1805 | Msa1340390:exon | 40.0% |
TTGTTGAAACAAAGATGGGG+AGG | - | tig0004148:2074-2093 | None:intergenic | 40.0% | |
CGAAACAAATTCCAGTAGCT+TGG | - | tig0004148:2268-2287 | None:intergenic | 40.0% | |
!!! | TTGGCTGTTTTTGGCATTCT+TGG | + | tig0004148:2300-2319 | Msa1340390:CDS | 40.0% |
!!! | TGGCTGTTTTTGGCATTCTT+GGG | + | tig0004148:2301-2320 | Msa1340390:CDS | 40.0% |
TGCGTCGAGTAGATGATTAA+TGG | - | tig0004148:2579-2598 | None:intergenic | 40.0% | |
CGACGCAATTAAATTAGGAG+AGG | + | tig0004148:2592-2611 | Msa1340390:intron | 40.0% | |
CAAAAGTCATTTGGACCAAG+TGG | + | tig0004148:2691-2710 | Msa1340390:CDS | 40.0% | |
! | TCATTTGGACCAAGTGGTTT+TGG | + | tig0004148:2697-2716 | Msa1340390:CDS | 40.0% |
! | CCATATTTGATGGCAGATCA+AGG | - | tig0004148:2750-2769 | None:intergenic | 40.0% |
CCTTGATCTGCCATCAAATA+TGG | + | tig0004148:2747-2766 | Msa1340390:CDS | 40.0% | |
CTAAGAATCAGTGAATGCAG+AGG | - | tig0004148:2777-2796 | None:intergenic | 40.0% | |
AATGCTTCAAGCTCAAAACC+TGG | - | tig0004148:3075-3094 | None:intergenic | 40.0% | |
GTATCTGAACATCTAGCCAT+TGG | + | tig0004148:3338-3357 | Msa1340390:CDS | 40.0% | |
GTAGCATTGTCGATCATCAT+TGG | + | tig0004148:3702-3721 | Msa1340390:CDS | 40.0% | |
!! | TGTCGATCATCATTGGTTTC+TGG | + | tig0004148:3709-3728 | Msa1340390:CDS | 40.0% |
!! | GATCATCATTGGTTTCTGGA+CGG | + | tig0004148:3713-3732 | Msa1340390:CDS | 40.0% |
AGACTTAACGAGTGCGAAAT+TGG | + | tig0004148:3999-4018 | Msa1340390:CDS | 40.0% | |
!! | TTGGAGGAGGGTTTTTGAAA+TGG | + | tig0004148:4018-4037 | Msa1340390:CDS | 40.0% |
GATACAAGCAGCAGAAACAT+TGG | - | tig0004148:4066-4085 | None:intergenic | 40.0% | |
! | TGTTTCTGCTGCTTGTATCA+CGG | + | tig0004148:4067-4086 | Msa1340390:CDS | 40.0% |
!! | ACTTACTGATTTCTTGAGGG+TGG | - | tig0004148:4102-4121 | None:intergenic | 40.0% |
ATTCACCTGCACCAAAAATC+AGG | - | tig0004148:4294-4313 | None:intergenic | 40.0% | |
!! | GAGAGCATTTGTCTATGCTA+TGG | + | tig0004148:4430-4449 | Msa1340390:CDS | 40.0% |
CTCACTCACATTCTTGAAAC+AGG | - | tig0004148:4503-4522 | None:intergenic | 40.0% | |
TCAAGAATGTGAGTGAGCAT+AGG | + | tig0004148:4506-4525 | Msa1340390:exon | 40.0% | |
CAAGAATGTGAGTGAGCATA+GGG | + | tig0004148:4507-4526 | Msa1340390:exon | 40.0% | |
AGCCAAACACCCAAACAAAT+AGG | - | tig0004148:4541-4560 | None:intergenic | 40.0% | |
!! | GAATTTGTTGGGTCTGAGTT+AGG | + | tig0004148:4611-4630 | Msa1340390:three_prime_UTR | 40.0% |
GACACATATTAGGATCTTCG+TGG | + | tig0004148:4680-4699 | Msa1340390:intron | 40.0% | |
ATTAGGATCTTCGTGGGATT+TGG | + | tig0004148:4687-4706 | Msa1340390:three_prime_UTR | 40.0% | |
TTGTGAAGCAGTTCAACATC+AGG | + | tig0004148:4746-4765 | Msa1340390:three_prime_UTR | 40.0% | |
ACTGCAAGATTCTTATTCGG+TGG | + | tig0004148:4881-4900 | Msa1340390:three_prime_UTR | 40.0% | |
CTGCAAGATTCTTATTCGGT+GGG | + | tig0004148:4882-4901 | Msa1340390:three_prime_UTR | 40.0% | |
GGCAATTCATGTTCCATTGC+AGG | - | tig0004148:2012-2031 | None:intergenic | 45.0% | |
! | TACTAGTTTCCTCACGGTTG+AGG | + | tig0004148:2194-2213 | Msa1340390:intron | 45.0% |
CATGAAGTTACCCAAGCTAC+TGG | + | tig0004148:2254-2273 | Msa1340390:CDS | 45.0% | |
!!! | GGCTGTTTTTGGCATTCTTG+GGG | + | tig0004148:2302-2321 | Msa1340390:CDS | 45.0% |
CAGAGGCGAACCATATTTGA+TGG | - | tig0004148:2760-2779 | None:intergenic | 45.0% | |
GGCTAGATGTTCAGATACGT+AGG | - | tig0004148:3336-3355 | None:intergenic | 45.0% | |
! | CTAGCCATTGGTCTAACAAC+CGG | + | tig0004148:3350-3369 | Msa1340390:CDS | 45.0% |
GTCTAACAACCGGCTACTTA+GGG | + | tig0004148:3360-3379 | Msa1340390:CDS | 45.0% | |
CACTGGATCTTGTCTTTGCT+CGG | + | tig0004148:3440-3459 | Msa1340390:CDS | 45.0% | |
! | TCTTTGCTCGGCTTTGTACT+AGG | + | tig0004148:3452-3471 | Msa1340390:CDS | 45.0% |
TCGTCACTACCAATTGACGA+GGG | - | tig0004148:3830-3849 | None:intergenic | 45.0% | |
ATCGTCACTACCAATTGACG+AGG | - | tig0004148:3831-3850 | None:intergenic | 45.0% | |
GGTAGTGACGATAGTGTTGT+TGG | + | tig0004148:3839-3858 | Msa1340390:CDS | 45.0% | |
!! | TTGTGGTTAGCCTGCATTGT+TGG | + | tig0004148:3939-3958 | Msa1340390:CDS | 45.0% |
! | TTGTTGGACCTCTTGGTGTA+TGG | + | tig0004148:3955-3974 | Msa1340390:CDS | 45.0% |
AACCTAAGCCATACACCAAG+AGG | - | tig0004148:3966-3985 | None:intergenic | 45.0% | |
CTTAACGAGTGCGAAATTGG+AGG | + | tig0004148:4002-4021 | Msa1340390:CDS | 45.0% | |
TTGGGTCTGAGTTAGGAAGT+TGG | + | tig0004148:4618-4637 | Msa1340390:three_prime_UTR | 45.0% | |
GAAGCTGAGAATCGTGAGTG+TGG | + | tig0004148:1880-1899 | Msa1340390:CDS | 50.0% | |
GGAGGAAGGAAAAGTGAGAG+TGG | + | tig0004148:1931-1950 | Msa1340390:CDS | 50.0% | |
GGAAGGAAAAGTGAGAGTGG+TGG | + | tig0004148:1934-1953 | Msa1340390:CDS | 50.0% | |
!! | AAGATGGGGAGGTGTTCTTG+TGG | - | tig0004148:2063-2082 | None:intergenic | 50.0% |
! | AAAAGCATGCCTCAACCGTG+AGG | - | tig0004148:2206-2225 | None:intergenic | 50.0% |
GTAGCCGGTTGTTAGACCAA+TGG | - | tig0004148:3357-3376 | None:intergenic | 50.0% | |
GGTCTAACAACCGGCTACTT+AGG | + | tig0004148:3359-3378 | Msa1340390:CDS | 50.0% | |
TGTTAGGCTCCCTAAGTAGC+CGG | - | tig0004148:3372-3391 | None:intergenic | 50.0% | |
GGGAGCCTAACAACTTTCAG+CGG | + | tig0004148:3380-3399 | Msa1340390:CDS | 50.0% | |
TCCAGCCGCTGAAAGTTGTT+AGG | - | tig0004148:3388-3407 | None:intergenic | 50.0% | |
! | ATTGGTTTCTGGACGGCGAA+GGG | + | tig0004148:3720-3739 | Msa1340390:CDS | 50.0% |
TGACAGCTTCCCTCGTCAAT+TGG | + | tig0004148:3818-3837 | Msa1340390:CDS | 50.0% | |
ATGGGGTGTGAGTAGTGCTT+TGG | + | tig0004148:3878-3897 | Msa1340390:CDS | 50.0% | |
ACCAAGAGGTCCAACAATGC+AGG | - | tig0004148:3952-3971 | None:intergenic | 50.0% | |
! | GACCTCTTGGTGTATGGCTT+AGG | + | tig0004148:3961-3980 | Msa1340390:CDS | 50.0% |
AACGAGTGCGAAATTGGAGG+AGG | + | tig0004148:4005-4024 | Msa1340390:CDS | 50.0% | |
ACGAGTGCGAAATTGGAGGA+GGG | + | tig0004148:4006-4025 | Msa1340390:CDS | 50.0% | |
CATGGAGCGAACGAGCAGTT+GGG | + | tig0004148:1804-1823 | Msa1340390:exon | 55.0% | |
ATGGAGCGAACGAGCAGTTG+GGG | + | tig0004148:1805-1824 | Msa1340390:CDS | 55.0% | |
GTTGGGGTTCTGCAGTTAGC+AGG | + | tig0004148:1821-1840 | Msa1340390:CDS | 55.0% | |
CTGGTCACGCCAAAACCACT+TGG | - | tig0004148:2709-2728 | None:intergenic | 55.0% | |
GCCTAACAACTTTCAGCGGC+TGG | + | tig0004148:3384-3403 | Msa1340390:CDS | 55.0% | |
!! | CATTGGTTTCTGGACGGCGA+AGG | + | tig0004148:3719-3738 | Msa1340390:CDS | 55.0% |
GGACGGCGAAGGGATTCAAA+TGG | + | tig0004148:3730-3749 | Msa1340390:CDS | 55.0% | |
! | GTGGTGGTGAAGCTCAGTTG+TGG | + | tig0004148:3922-3941 | Msa1340390:CDS | 55.0% |
GCCTGCATTGTTGGACCTCT+TGG | + | tig0004148:3948-3967 | Msa1340390:CDS | 55.0% | |
CCAACTGCTCGTTCGCTCCA+TGG | - | tig0004148:1806-1825 | None:intergenic | 60.0% | |
CCATGGAGCGAACGAGCAGT+TGG | + | tig0004148:1803-1822 | Msa1340390:exon | 60.0% | |
ATGCTCGAGCTCAGTGTCGC+TGG | + | tig0004148:3416-3435 | Msa1340390:CDS | 60.0% | |
! | AGCTCAGTGTCGCTGGACAC+TGG | + | tig0004148:3423-3442 | Msa1340390:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0004148 | gene | 1618 | 4970 | 1618 | ID=Msa1340390;Name=Msa1340390 |
tig0004148 | mRNA | 1618 | 4970 | 1618 | ID=Msa1340390-mRNA-1;Parent=Msa1340390;Name=Msa1340390-mRNA-1;_AED=0.32;_eAED=0.32;_QI=187|1|1|1|0.83|0.71|7|419|443 |
tig0004148 | exon | 1618 | 2125 | 1618 | ID=Msa1340390-mRNA-1:exon:2634;Parent=Msa1340390-mRNA-1 |
tig0004148 | exon | 2240 | 2323 | 2240 | ID=Msa1340390-mRNA-1:exon:2635;Parent=Msa1340390-mRNA-1 |
tig0004148 | exon | 2670 | 2768 | 2670 | ID=Msa1340390-mRNA-1:exon:2636;Parent=Msa1340390-mRNA-1 |
tig0004148 | exon | 3281 | 3473 | 3281 | ID=Msa1340390-mRNA-1:exon:2637;Parent=Msa1340390-mRNA-1 |
tig0004148 | exon | 3691 | 4115 | 3691 | ID=Msa1340390-mRNA-1:exon:2638;Parent=Msa1340390-mRNA-1 |
tig0004148 | exon | 4308 | 4652 | 4308 | ID=Msa1340390-mRNA-1:exon:2639;Parent=Msa1340390-mRNA-1 |
tig0004148 | exon | 4687 | 4970 | 4687 | ID=Msa1340390-mRNA-1:exon:2640;Parent=Msa1340390-mRNA-1 |
tig0004148 | five_prime_UTR | 1618 | 1804 | 1618 | ID=Msa1340390-mRNA-1:five_prime_utr;Parent=Msa1340390-mRNA-1 |
tig0004148 | CDS | 1805 | 2125 | 1805 | ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1 |
tig0004148 | CDS | 2240 | 2323 | 2240 | ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1 |
tig0004148 | CDS | 2670 | 2768 | 2670 | ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1 |
tig0004148 | CDS | 3281 | 3473 | 3281 | ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1 |
tig0004148 | CDS | 3691 | 4115 | 3691 | ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1 |
tig0004148 | CDS | 4308 | 4517 | 4308 | ID=Msa1340390-mRNA-1:cds;Parent=Msa1340390-mRNA-1 |
tig0004148 | three_prime_UTR | 4518 | 4652 | 4518 | ID=Msa1340390-mRNA-1:three_prime_utr;Parent=Msa1340390-mRNA-1 |
tig0004148 | three_prime_UTR | 4687 | 4970 | 4687 | ID=Msa1340390-mRNA-1:three_prime_utr;Parent=Msa1340390-mRNA-1 |
Gene Sequence |
Protein sequence |