Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946210 | sp|Q5C9I9|ISPD_MENPI | 68.657 | 67 | 21 | 0 | 12 | 78 | 6 | 72 | 1.15e-23 | 93.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946210 | G7KNM8 | 88.462 | 78 | 9 | 0 | 1 | 78 | 1 | 78 | 8.70e-40 | 141 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0050040 | Msa0946210 | 0.800180 | 1.626507e-48 | -8.615850e-47 |
| Msa0074650 | Msa0946210 | 0.802062 | 6.705317e-49 | -8.615850e-47 |
| Msa0669840 | Msa0946210 | 0.833329 | 5.677640e-56 | -8.615850e-47 |
| Msa0823400 | Msa0946210 | 0.809082 | 2.255204e-50 | -8.615850e-47 |
| Msa0149140 | Msa0946210 | 0.815559 | 8.686659e-52 | -8.615850e-47 |
| Msa0194380 | Msa0946210 | 0.807772 | 4.292839e-50 | -8.615850e-47 |
| Msa0200030 | Msa0946210 | 0.816567 | 5.173084e-52 | -8.615850e-47 |
| Msa0206800 | Msa0946210 | 0.834109 | 3.624609e-56 | -8.615850e-47 |
| Msa0236110 | Msa0946210 | 0.815101 | 1.098537e-51 | -8.615850e-47 |
| Msa0406000 | Msa0946210 | 0.819356 | 1.212228e-52 | -8.615850e-47 |
| Msa0417440 | Msa0946210 | 0.815167 | 1.062227e-51 | -8.615850e-47 |
| Msa0424330 | Msa0946210 | 0.806122 | 9.587826e-50 | -8.615850e-47 |
| Msa0441590 | Msa0946210 | 0.805439 | 1.333936e-49 | -8.615850e-47 |
| Msa0451400 | Msa0946210 | 0.818024 | 2.432278e-52 | -8.615850e-47 |
| Msa0242540 | Msa0946210 | 0.818772 | 1.646070e-52 | -8.615850e-47 |
| Msa0252770 | Msa0946210 | 0.805082 | 1.585015e-49 | -8.615850e-47 |
| Msa0273990 | Msa0946210 | 0.801547 | 8.551690e-49 | -8.615850e-47 |
| Msa0277290 | Msa0946210 | 0.805315 | 1.416208e-49 | -8.615850e-47 |
| Msa0280750 | Msa0946210 | 0.830778 | 2.424567e-55 | -8.615850e-47 |
| Msa0288200 | Msa0946210 | 0.821848 | 3.245738e-53 | -8.615850e-47 |
| Msa0306120 | Msa0946210 | 0.810940 | 8.975501e-51 | -8.615850e-47 |
| Msa0314630 | Msa0946210 | 0.824744 | 6.838361e-54 | -8.615850e-47 |
| Msa0322830 | Msa0946210 | 0.828800 | 7.351338e-55 | -8.615850e-47 |
| Msa0322840 | Msa0946210 | 0.807239 | 5.570098e-50 | -8.615850e-47 |
| Msa0322860 | Msa0946210 | 0.824136 | 9.504257e-54 | -8.615850e-47 |
| Msa0326540 | Msa0946210 | 0.808163 | 3.543863e-50 | -8.615850e-47 |
| Msa0329620 | Msa0946210 | 0.812267 | 4.620723e-51 | -8.615850e-47 |
| Msa0331530 | Msa0946210 | 0.809840 | 1.550677e-50 | -8.615850e-47 |
| Msa0331540 | Msa0946210 | 0.803055 | 4.183337e-49 | -8.615850e-47 |
| Msa0351770 | Msa0946210 | 0.813875 | 2.050867e-51 | -8.615850e-47 |
| Msa0359250 | Msa0946210 | 0.830363 | 3.063644e-55 | -8.615850e-47 |
| Msa0492190 | Msa0946210 | 0.806001 | 1.016784e-49 | -8.615850e-47 |
| Msa0515950 | Msa0946210 | 0.840310 | 9.392680e-58 | -8.615850e-47 |
| Msa0534930 | Msa0946210 | 0.803440 | 3.482778e-49 | -8.615850e-47 |
| Msa0575740 | Msa0946210 | 0.822289 | 2.565094e-53 | -8.615850e-47 |
| Msa0591790 | Msa0946210 | 0.800420 | 1.453474e-48 | -8.615850e-47 |
| Msa0591800 | Msa0946210 | 0.863661 | 2.123089e-64 | -8.615850e-47 |
| Msa0860280 | Msa0946210 | 0.802463 | 5.544491e-49 | -8.615850e-47 |
| Msa0862310 | Msa0946210 | 0.803383 | 3.578860e-49 | -8.615850e-47 |
| Msa0929870 | Msa0946210 | 0.808614 | 2.840874e-50 | -8.615850e-47 |
| Msa0946210 | Msa0961560 | 0.839078 | 1.964197e-57 | -8.615850e-47 |
| Msa0946210 | Msa0965310 | 0.800364 | 1.492025e-48 | -8.615850e-47 |
| Msa0946210 | Msa0979510 | 0.901270 | 3.174553e-78 | -8.615850e-47 |
| Msa0946210 | Msa0996270 | 0.825054 | 5.776641e-54 | -8.615850e-47 |
| Msa0946210 | Msa0999340 | 0.831306 | 1.799134e-55 | -8.615850e-47 |
| Msa0946210 | Msa0999350 | 0.826388 | 2.787953e-54 | -8.615850e-47 |
| Msa0946210 | Msa0999390 | 0.825268 | 5.141381e-54 | -8.615850e-47 |
| Msa0946210 | Msa0999400 | 0.824425 | 8.126491e-54 | -8.615850e-47 |
| Msa0946210 | Msa0999410 | 0.805386 | 1.368599e-49 | -8.615850e-47 |
| Msa0946210 | Msa1037900 | 0.807734 | 4.373385e-50 | -8.615850e-47 |
| Msa0946210 | Msa1047990 | 0.813431 | 2.568461e-51 | -8.615850e-47 |
| Msa0946210 | Msa1084520 | 0.808884 | 2.486442e-50 | -8.615850e-47 |
| Msa0946210 | Msa1092020 | 0.849263 | 3.618209e-60 | -8.615850e-47 |
| Msa0946210 | Msa1129960 | 0.804654 | 1.947658e-49 | -8.615850e-47 |
| Msa0946210 | Msa1135380 | 0.856697 | 2.700284e-62 | -8.615850e-47 |
| Msa0946210 | Msa1177400 | 0.804247 | 2.367771e-49 | -8.615850e-47 |
| Msa0946210 | Msa1201110 | 0.812889 | 3.378258e-51 | -8.615850e-47 |
| Msa0946210 | Msa1201160 | 0.826228 | 3.044035e-54 | -8.615850e-47 |
| Msa0946210 | Msa1228190 | 0.823176 | 1.594870e-53 | -8.615850e-47 |
| Msa0946210 | Msa1271260 | 0.818860 | 1.572217e-52 | -8.615850e-47 |
| Msa0946210 | Msa1292040 | 0.802048 | 6.747495e-49 | -8.615850e-47 |
| Msa0946210 | Msa1294290 | 0.832477 | 9.247359e-56 | -8.615850e-47 |
| Msa0946210 | Msa1340390 | 0.818898 | 1.541486e-52 | -8.615850e-47 |
| Msa0946210 | Msa1345420 | 0.846567 | 2.003158e-59 | -8.615850e-47 |
| Msa0946210 | Msa1389050 | 0.802848 | 4.616632e-49 | -8.615850e-47 |
| Msa0946210 | Msa1406780 | 0.806212 | 9.181200e-50 | -8.615850e-47 |
| Msa0946210 | Msa1421550 | 0.844693 | 6.456298e-59 | -8.615850e-47 |
| Msa0946210 | Msa1431850 | 0.804196 | 2.426107e-49 | -8.615850e-47 |
| Msa0946210 | Msa1435480 | 0.822304 | 2.544920e-53 | -8.615850e-47 |
| Msa0946210 | Msa1442630 | 0.847630 | 1.023763e-59 | -8.615850e-47 |
| Msa0946210 | Msa1461060 | 0.816005 | 6.911229e-52 | -8.615850e-47 |
| Msa0946210 | Msa1462530 | 0.849147 | 3.896829e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946210 | MtrunA17_Chr6g0459281 | 88.462 | 78 | 9 | 0 | 1 | 78 | 1 | 78 | 1.67e-43 | 141 |
| Msa0946210 | MtrunA17_Chr6g0459351 | 78.205 | 78 | 17 | 0 | 1 | 78 | 1 | 78 | 8.37e-39 | 129 |
| Msa0946210 | MtrunA17_Chr6g0459331 | 71.795 | 78 | 22 | 0 | 1 | 78 | 1 | 78 | 4.08e-34 | 117 |
| Msa0946210 | MtrunA17_Chr6g0459271 | 71.795 | 78 | 22 | 0 | 1 | 78 | 1 | 78 | 7.95e-34 | 116 |
| Msa0946210 | MtrunA17_Chr6g0459261 | 69.231 | 78 | 24 | 0 | 1 | 78 | 13 | 90 | 2.19e-33 | 115 |
| Msa0946210 | MtrunA17_Chr6g0459301 | 68.354 | 79 | 24 | 1 | 1 | 78 | 1 | 79 | 7.63e-31 | 108 |
| Msa0946210 | MtrunA17_Chr6g0459341 | 51.852 | 108 | 28 | 2 | 1 | 86 | 1 | 106 | 3.27e-25 | 90.1 |
| Msa0946210 | MtrunA17_Chr7g0266981 | 57.692 | 78 | 32 | 1 | 1 | 78 | 1 | 77 | 4.48e-24 | 91.7 |
| Msa0946210 | MtrunA17_Chr4g0044111 | 57.692 | 78 | 32 | 1 | 1 | 78 | 1 | 77 | 4.72e-24 | 91.7 |
| Msa0946210 | MtrunA17_Chr7g0270461 | 62.687 | 67 | 24 | 1 | 12 | 78 | 45 | 110 | 3.37e-21 | 81.3 |
| Msa0946210 | MtrunA17_Chr7g0270451 | 55.000 | 80 | 29 | 2 | 12 | 85 | 5 | 83 | 2.24e-20 | 81.6 |
| Msa0946210 | MtrunA17_Chr7g0266891 | 59.091 | 66 | 26 | 1 | 13 | 78 | 7 | 71 | 2.98e-20 | 81.3 |
| Msa0946210 | MtrunA17_Chr7g0270441 | 64.179 | 67 | 23 | 1 | 12 | 78 | 5 | 70 | 2.99e-20 | 81.3 |
| Msa0946210 | MtrunA17_Chr7g0267011 | 50.725 | 69 | 33 | 1 | 10 | 78 | 5 | 72 | 6.08e-18 | 73.9 |
| Msa0946210 | MtrunA17_Chr2g0324021 | 58.209 | 67 | 27 | 1 | 12 | 78 | 5 | 70 | 1.13e-17 | 74.7 |
| Msa0946210 | MtrunA17_Chr4g0026001 | 50.746 | 67 | 32 | 1 | 12 | 78 | 13 | 78 | 7.82e-17 | 72.4 |
| Msa0946210 | MtrunA17_Chr4g0044131 | 53.731 | 67 | 30 | 1 | 12 | 78 | 7 | 72 | 1.09e-16 | 72.0 |
| Msa0946210 | MtrunA17_Chr7g0267001 | 52.239 | 67 | 31 | 1 | 12 | 78 | 7 | 72 | 1.27e-16 | 71.6 |
| Msa0946210 | MtrunA17_Chr4g0025971 | 46.835 | 79 | 40 | 2 | 1 | 78 | 1 | 78 | 1.65e-16 | 71.6 |
| Msa0946210 | MtrunA17_Chr4g0040371 | 56.716 | 67 | 25 | 2 | 12 | 78 | 18 | 80 | 3.19e-16 | 70.9 |
| Msa0946210 | MtrunA17_Chr4g0025981 | 50.000 | 64 | 31 | 1 | 15 | 78 | 43 | 105 | 3.68e-15 | 68.2 |
| Msa0946210 | MtrunA17_Chr3g0084871 | 50.000 | 74 | 35 | 2 | 3 | 75 | 6 | 78 | 7.46e-15 | 67.0 |
| Msa0946210 | MtrunA17_Chr7g0268591 | 48.649 | 74 | 36 | 2 | 6 | 79 | 26 | 97 | 7.70e-15 | 67.4 |
| Msa0946210 | MtrunA17_Chr7g0252031 | 47.945 | 73 | 36 | 2 | 6 | 78 | 28 | 98 | 8.51e-15 | 67.0 |
| Msa0946210 | MtrunA17_Chr7g0266991 | 65.306 | 49 | 16 | 1 | 12 | 60 | 24 | 71 | 1.46e-13 | 63.2 |
| Msa0946210 | MtrunA17_Chr7g0244061 | 47.761 | 67 | 33 | 2 | 12 | 78 | 28 | 92 | 1.48e-13 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0946210 | AT2G47140.1 | 57.143 | 70 | 29 | 1 | 9 | 78 | 2 | 70 | 1.05e-21 | 85.5 |
| Msa0946210 | AT2G47130.1 | 54.286 | 70 | 31 | 1 | 9 | 78 | 2 | 70 | 2.96e-20 | 81.6 |
| Msa0946210 | AT2G47120.1 | 52.857 | 70 | 32 | 1 | 9 | 78 | 2 | 70 | 3.91e-19 | 78.6 |
| Msa0946210 | AT3G29250.3 | 52.055 | 73 | 34 | 1 | 3 | 75 | 32 | 103 | 5.41e-19 | 79.0 |
| Msa0946210 | AT3G29260.1 | 54.286 | 70 | 31 | 1 | 9 | 78 | 2 | 70 | 1.29e-18 | 77.4 |
| Msa0946210 | AT3G29250.2 | 55.224 | 67 | 29 | 1 | 9 | 75 | 2 | 67 | 2.14e-18 | 76.6 |
| Msa0946210 | AT2G47120.2 | 52.239 | 67 | 31 | 1 | 12 | 78 | 6 | 71 | 1.34e-17 | 74.7 |
| Msa0946210 | AT3G29250.1 | 50.667 | 75 | 34 | 2 | 3 | 75 | 32 | 105 | 4.05e-17 | 73.9 |
| Msa0946210 | AT3G51680.1 | 48.101 | 79 | 36 | 2 | 1 | 75 | 20 | 97 | 5.20e-14 | 65.5 |
| Msa0946210 | AT3G26760.1 | 50.746 | 67 | 31 | 2 | 12 | 78 | 35 | 99 | 1.54e-13 | 63.9 |
| Msa0946210 | AT3G42960.1 | 52.941 | 68 | 28 | 2 | 8 | 75 | 3 | 66 | 1.02e-12 | 61.6 |
| Msa0946210 | AT3G26770.1 | 50.000 | 64 | 30 | 2 | 12 | 75 | 40 | 101 | 1.52e-11 | 58.5 |
| Msa0946210 | AT1G52340.1 | 47.222 | 72 | 33 | 3 | 12 | 79 | 17 | 87 | 2.24e-11 | 58.2 |
| Msa0946210 | AT4G03140.1 | 46.269 | 67 | 34 | 2 | 12 | 78 | 77 | 141 | 5.38e-11 | 57.0 |
Find 27 sgRNAs with CRISPR-Local
Find 104 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTACTAACAACGGTCTT+AGG | 0.262828 | 6_3:+26634032 | Msa0946210:CDS |
| CACCATTCGTGCACCTTGTT+CGG | 0.349762 | 6_3:-26634125 | None:intergenic |
| GCCAATGCCGCTGGCACCTC+CGG | 0.364087 | 6_3:-26634080 | None:intergenic |
| CGTCTCTTTGCCAATGCCGC+TGG | 0.394229 | 6_3:-26634089 | None:intergenic |
| GAGCGAGTGGCTGCATCCAT+TGG | 0.421907 | 6_3:+26634178 | Msa0946210:CDS |
| ACCGGAGGTGCCAGCGGCAT+TGG | 0.425693 | 6_3:+26634079 | Msa0946210:CDS |
| CTGCATCCATTGGCGGCCAC+AGG | 0.444834 | 6_3:+26634188 | Msa0946210:CDS |
| TGCTGACATTCAAGACGAGT+TGG | 0.475276 | 6_3:+26634153 | Msa0946210:CDS |
| GTGTTTGCAGTTAACATTCG+AGG | 0.478434 | 6_3:+26635025 | Msa0946210:intron |
| GCTGACATTCAAGACGAGTT+GGG | 0.485584 | 6_3:+26634154 | Msa0946210:CDS |
| GGTGACGATGGCTACTTTGC+CGG | 0.490347 | 6_3:-26634059 | None:intergenic |
| GGTGCTCCTGTGGCCGCCAA+TGG | 0.498816 | 6_3:-26634194 | None:intergenic |
| AACAACGGTCTTAGGTTAGC+CGG | 0.520911 | 6_3:+26634040 | Msa0946210:CDS |
| GGCAAAGTAGCCATCGTCAC+CGG | 0.538495 | 6_3:+26634061 | Msa0946210:CDS |
| AGACGAGTTGGGCGAGCGAG+TGG | 0.553364 | 6_3:+26634165 | Msa0946210:CDS |
| GCACATCTCTTTGCCGAACA+AGG | 0.555212 | 6_3:+26634112 | Msa0946210:CDS |
| TGCCGAACAAGGTGCACGAA+TGG | 0.557302 | 6_3:+26634123 | Msa0946210:CDS |
| CGAGTGGCTGCATCCATTGG+CGG | 0.561662 | 6_3:+26634181 | Msa0946210:CDS |
| CAGCGGCATTGGCAAAGAGA+CGG | 0.569942 | 6_3:+26634090 | Msa0946210:CDS |
| CGAACAAGGTGCACGAATGG+TGG | 0.575204 | 6_3:+26634126 | Msa0946210:CDS |
| GCTGGCACCTCCGGTGACGA+TGG | 0.584463 | 6_3:-26634071 | None:intergenic |
| ATCGTCACCGGAGGTGCCAG+CGG | 0.590387 | 6_3:+26634073 | Msa0946210:CDS |
| TGCTATGTCACAATGGATGA+AGG | 0.590504 | 6_3:-26634215 | None:intergenic |
| CTTCATTTGCTATGTCACAA+TGG | 0.633784 | 6_3:-26634222 | None:intergenic |
| AATGGATGAAGGTGCTCCTG+TGG | 0.649213 | 6_3:-26634204 | None:intergenic |
| AAAGTAGCCATCGTCACCGG+AGG | 0.651370 | 6_3:+26634064 | Msa0946210:CDS |
| GAAGCTTCATCTACTAACAA+CGG | 0.689074 | 6_3:+26634025 | Msa0946210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAAATAAATTTTTTTTAT+AGG | + | chr6_3:26634752-26634771 | Msa0946210:intron | 0.0% |
| !!! | TAAAATAAATTTTTTTTATA+GGG | + | chr6_3:26634753-26634772 | Msa0946210:intron | 0.0% |
| !!! | ATAAAATAAATTTTTTTTAT+AGG | + | chr6_3:26634752-26634771 | Msa0946210:intron | 0.0% |
| !!! | TAAAATAAATTTTTTTTATA+GGG | + | chr6_3:26634753-26634772 | Msa0946210:intron | 0.0% |
| !! | AAAAAATCTCATTCAATTTA+CGG | + | chr6_3:26634252-26634271 | Msa0946210:intron | 15.0% |
| !! | ACATTATAATGTAGAAATTA+TGG | - | chr6_3:26634604-26634623 | None:intergenic | 15.0% |
| !!! | TAAAGTCTTATATAGTAAAT+GGG | - | chr6_3:26634797-26634816 | None:intergenic | 15.0% |
| !!! | ATAAAGTCTTATATAGTAAA+TGG | - | chr6_3:26634798-26634817 | None:intergenic | 15.0% |
| !! | AAAAAATCTCATTCAATTTA+CGG | + | chr6_3:26634252-26634271 | Msa0946210:intron | 15.0% |
| !! | ACATTATAATGTAGAAATTA+TGG | - | chr6_3:26634604-26634623 | None:intergenic | 15.0% |
| !!! | TAAAGTCTTATATAGTAAAT+GGG | - | chr6_3:26634797-26634816 | None:intergenic | 15.0% |
| !!! | ATAAAGTCTTATATAGTAAA+TGG | - | chr6_3:26634798-26634817 | None:intergenic | 15.0% |
| !! | CAAAATTTCATAATACACTT+AGG | - | chr6_3:26634330-26634349 | None:intergenic | 20.0% |
| !!! | ATTATGGTTACTTTTATCTT+AGG | - | chr6_3:26634588-26634607 | None:intergenic | 20.0% |
| !!! | TACTGATAGTATAATTTTGT+AGG | + | chr6_3:26634691-26634710 | Msa0946210:intron | 20.0% |
| !!! | AAAGTCTTATATAGTAAATG+GGG | - | chr6_3:26634796-26634815 | None:intergenic | 20.0% |
| !!! | GAAAGAAAAAGTTGTATTTT+AGG | - | chr6_3:26634908-26634927 | None:intergenic | 20.0% |
| !! | CAAAATTTCATAATACACTT+AGG | - | chr6_3:26634330-26634349 | None:intergenic | 20.0% |
| !!! | ATTATGGTTACTTTTATCTT+AGG | - | chr6_3:26634588-26634607 | None:intergenic | 20.0% |
| !!! | TACTGATAGTATAATTTTGT+AGG | + | chr6_3:26634691-26634710 | Msa0946210:intron | 20.0% |
| !!! | AAAGTCTTATATAGTAAATG+GGG | - | chr6_3:26634796-26634815 | None:intergenic | 20.0% |
| !!! | GAAAGAAAAAGTTGTATTTT+AGG | - | chr6_3:26634908-26634927 | None:intergenic | 20.0% |
| !!! | GAAGAATTTGAAGTTTTTTG+AGG | - | chr6_3:26634453-26634472 | None:intergenic | 25.0% |
| ! | ATATTATGTTTAGCAATGCT+GGG | + | chr6_3:26634945-26634964 | Msa0946210:intron | 25.0% |
| !!! | GAAGAATTTGAAGTTTTTTG+AGG | - | chr6_3:26634453-26634472 | None:intergenic | 25.0% |
| ! | ATATTATGTTTAGCAATGCT+GGG | + | chr6_3:26634945-26634964 | Msa0946210:intron | 25.0% |
| TGGACAGGTAAAAATTAACT+AGG | + | chr6_3:26634285-26634304 | Msa0946210:intron | 30.0% | |
| GGACAGGTAAAAATTAACTA+GGG | + | chr6_3:26634286-26634305 | Msa0946210:intron | 30.0% | |
| ! | TAACTTTAATTAGTCTCTGC+TGG | - | chr6_3:26634673-26634692 | None:intergenic | 30.0% |
| ! | TTTTCTTTCTTTTCCACAAC+AGG | + | chr6_3:26634919-26634938 | Msa0946210:intron | 30.0% |
| AACATAATATCTACCTGTTG+TGG | - | chr6_3:26634935-26634954 | None:intergenic | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | + | chr6_3:26634944-26634963 | Msa0946210:intron | 30.0% | |
| TGGACAGGTAAAAATTAACT+AGG | + | chr6_3:26634285-26634304 | Msa0946210:intron | 30.0% | |
| GGACAGGTAAAAATTAACTA+GGG | + | chr6_3:26634286-26634305 | Msa0946210:intron | 30.0% | |
| ! | TAACTTTAATTAGTCTCTGC+TGG | - | chr6_3:26634673-26634692 | None:intergenic | 30.0% |
| ! | TTTTCTTTCTTTTCCACAAC+AGG | + | chr6_3:26634919-26634938 | Msa0946210:intron | 30.0% |
| AACATAATATCTACCTGTTG+TGG | - | chr6_3:26634935-26634954 | None:intergenic | 30.0% | |
| GATATTATGTTTAGCAATGC+TGG | + | chr6_3:26634944-26634963 | Msa0946210:intron | 30.0% | |
| GAAGCTTCATCTACTAACAA+CGG | + | chr6_3:26634025-26634044 | Msa0946210:CDS | 35.0% | |
| !! | CTTCATTTGCTATGTCACAA+TGG | - | chr6_3:26634225-26634244 | None:intergenic | 35.0% |
| CAATTTACGGTCAATGCTTA+TGG | + | chr6_3:26634265-26634284 | Msa0946210:intron | 35.0% | |
| ! | TCCATCTGATCAGACTATTT+TGG | + | chr6_3:26634976-26634995 | Msa0946210:intron | 35.0% |
| TCCAAAATAGTCTGATCAGA+TGG | - | chr6_3:26634980-26634999 | None:intergenic | 35.0% | |
| GAATGTTAACTGCAAACACA+TGG | - | chr6_3:26635024-26635043 | None:intergenic | 35.0% | |
| GAAGCTTCATCTACTAACAA+CGG | + | chr6_3:26634025-26634044 | Msa0946210:CDS | 35.0% | |
| !! | CTTCATTTGCTATGTCACAA+TGG | - | chr6_3:26634225-26634244 | None:intergenic | 35.0% |
| CAATTTACGGTCAATGCTTA+TGG | + | chr6_3:26634265-26634284 | Msa0946210:intron | 35.0% | |
| ! | TCCATCTGATCAGACTATTT+TGG | + | chr6_3:26634976-26634995 | Msa0946210:intron | 35.0% |
| TCCAAAATAGTCTGATCAGA+TGG | - | chr6_3:26634980-26634999 | None:intergenic | 35.0% | |
| GAATGTTAACTGCAAACACA+TGG | - | chr6_3:26635024-26635043 | None:intergenic | 35.0% | |
| CATCTACTAACAACGGTCTT+AGG | + | chr6_3:26634032-26634051 | Msa0946210:CDS | 40.0% | |
| TGCTATGTCACAATGGATGA+AGG | - | chr6_3:26634218-26634237 | None:intergenic | 40.0% | |
| GTTAACTGCAAACACATGGT+CGG | - | chr6_3:26635020-26635039 | None:intergenic | 40.0% | |
| GTGTTTGCAGTTAACATTCG+AGG | + | chr6_3:26635025-26635044 | Msa0946210:intron | 40.0% | |
| CATCTACTAACAACGGTCTT+AGG | + | chr6_3:26634032-26634051 | Msa0946210:CDS | 40.0% | |
| TGCTATGTCACAATGGATGA+AGG | - | chr6_3:26634218-26634237 | None:intergenic | 40.0% | |
| GTTAACTGCAAACACATGGT+CGG | - | chr6_3:26635020-26635039 | None:intergenic | 40.0% | |
| GTGTTTGCAGTTAACATTCG+AGG | + | chr6_3:26635025-26635044 | Msa0946210:intron | 40.0% | |
| AACAACGGTCTTAGGTTAGC+CGG | + | chr6_3:26634040-26634059 | Msa0946210:CDS | 45.0% | |
| TGCTGACATTCAAGACGAGT+TGG | + | chr6_3:26634153-26634172 | Msa0946210:CDS | 45.0% | |
| GCTGACATTCAAGACGAGTT+GGG | + | chr6_3:26634154-26634173 | Msa0946210:CDS | 45.0% | |
| TACGGTCAATGCTTATGGAC+AGG | + | chr6_3:26634270-26634289 | Msa0946210:intron | 45.0% | |
| AACAACGGTCTTAGGTTAGC+CGG | + | chr6_3:26634040-26634059 | Msa0946210:CDS | 45.0% | |
| TGCTGACATTCAAGACGAGT+TGG | + | chr6_3:26634153-26634172 | Msa0946210:CDS | 45.0% | |
| GCTGACATTCAAGACGAGTT+GGG | + | chr6_3:26634154-26634173 | Msa0946210:CDS | 45.0% | |
| TACGGTCAATGCTTATGGAC+AGG | + | chr6_3:26634270-26634289 | Msa0946210:intron | 45.0% | |
| GCACATCTCTTTGCCGAACA+AGG | + | chr6_3:26634112-26634131 | Msa0946210:CDS | 50.0% | |
| CACCATTCGTGCACCTTGTT+CGG | - | chr6_3:26634128-26634147 | None:intergenic | 50.0% | |
| !! | AATGGATGAAGGTGCTCCTG+TGG | - | chr6_3:26634207-26634226 | None:intergenic | 50.0% |
| GCACATCTCTTTGCCGAACA+AGG | + | chr6_3:26634112-26634131 | Msa0946210:CDS | 50.0% | |
| CACCATTCGTGCACCTTGTT+CGG | - | chr6_3:26634128-26634147 | None:intergenic | 50.0% | |
| !! | AATGGATGAAGGTGCTCCTG+TGG | - | chr6_3:26634207-26634226 | None:intergenic | 50.0% |
| ! | GGTGACGATGGCTACTTTGC+CGG | - | chr6_3:26634062-26634081 | None:intergenic | 55.0% |
| GGCAAAGTAGCCATCGTCAC+CGG | + | chr6_3:26634061-26634080 | Msa0946210:CDS | 55.0% | |
| AAAGTAGCCATCGTCACCGG+AGG | + | chr6_3:26634064-26634083 | Msa0946210:CDS | 55.0% | |
| !! | CAGCGGCATTGGCAAAGAGA+CGG | + | chr6_3:26634090-26634109 | Msa0946210:CDS | 55.0% |
| TGCCGAACAAGGTGCACGAA+TGG | + | chr6_3:26634123-26634142 | Msa0946210:CDS | 55.0% | |
| CGAACAAGGTGCACGAATGG+TGG | + | chr6_3:26634126-26634145 | Msa0946210:CDS | 55.0% | |
| ! | GGTGACGATGGCTACTTTGC+CGG | - | chr6_3:26634062-26634081 | None:intergenic | 55.0% |
| GGCAAAGTAGCCATCGTCAC+CGG | + | chr6_3:26634061-26634080 | Msa0946210:CDS | 55.0% | |
| AAAGTAGCCATCGTCACCGG+AGG | + | chr6_3:26634064-26634083 | Msa0946210:CDS | 55.0% | |
| !! | CAGCGGCATTGGCAAAGAGA+CGG | + | chr6_3:26634090-26634109 | Msa0946210:CDS | 55.0% |
| TGCCGAACAAGGTGCACGAA+TGG | + | chr6_3:26634123-26634142 | Msa0946210:CDS | 55.0% | |
| CGAACAAGGTGCACGAATGG+TGG | + | chr6_3:26634126-26634145 | Msa0946210:CDS | 55.0% | |
| CGTCTCTTTGCCAATGCCGC+TGG | - | chr6_3:26634092-26634111 | None:intergenic | 60.0% | |
| GAGCGAGTGGCTGCATCCAT+TGG | + | chr6_3:26634178-26634197 | Msa0946210:CDS | 60.0% | |
| CGAGTGGCTGCATCCATTGG+CGG | + | chr6_3:26634181-26634200 | Msa0946210:CDS | 60.0% | |
| CGTCTCTTTGCCAATGCCGC+TGG | - | chr6_3:26634092-26634111 | None:intergenic | 60.0% | |
| GAGCGAGTGGCTGCATCCAT+TGG | + | chr6_3:26634178-26634197 | Msa0946210:CDS | 60.0% | |
| CGAGTGGCTGCATCCATTGG+CGG | + | chr6_3:26634181-26634200 | Msa0946210:CDS | 60.0% | |
| !! | ATCGTCACCGGAGGTGCCAG+CGG | + | chr6_3:26634073-26634092 | Msa0946210:CDS | 65.0% |
| ! | AGACGAGTTGGGCGAGCGAG+TGG | + | chr6_3:26634165-26634184 | Msa0946210:CDS | 65.0% |
| CTGCATCCATTGGCGGCCAC+AGG | + | chr6_3:26634188-26634207 | Msa0946210:CDS | 65.0% | |
| !! | ATCGTCACCGGAGGTGCCAG+CGG | + | chr6_3:26634073-26634092 | Msa0946210:CDS | 65.0% |
| ! | AGACGAGTTGGGCGAGCGAG+TGG | + | chr6_3:26634165-26634184 | Msa0946210:CDS | 65.0% |
| CTGCATCCATTGGCGGCCAC+AGG | + | chr6_3:26634188-26634207 | Msa0946210:CDS | 65.0% | |
| GCTGGCACCTCCGGTGACGA+TGG | - | chr6_3:26634074-26634093 | None:intergenic | 70.0% | |
| !! | ACCGGAGGTGCCAGCGGCAT+TGG | + | chr6_3:26634079-26634098 | Msa0946210:CDS | 70.0% |
| GCCAATGCCGCTGGCACCTC+CGG | - | chr6_3:26634083-26634102 | None:intergenic | 70.0% | |
| GGTGCTCCTGTGGCCGCCAA+TGG | - | chr6_3:26634197-26634216 | None:intergenic | 70.0% | |
| GCTGGCACCTCCGGTGACGA+TGG | - | chr6_3:26634074-26634093 | None:intergenic | 70.0% | |
| !! | ACCGGAGGTGCCAGCGGCAT+TGG | + | chr6_3:26634079-26634098 | Msa0946210:CDS | 70.0% |
| GCCAATGCCGCTGGCACCTC+CGG | - | chr6_3:26634083-26634102 | None:intergenic | 70.0% | |
| GGTGCTCCTGTGGCCGCCAA+TGG | - | chr6_3:26634197-26634216 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 26634019 | 26635064 | 26634019 | ID=Msa0946210;Name=Msa0946210 |
| chr6_3 | mRNA | 26634019 | 26635064 | 26634019 | ID=Msa0946210-mRNA-1;Parent=Msa0946210;Name=Msa0946210-mRNA-1;_AED=0.45;_eAED=0.52;_QI=0|0|0|1|1|1|2|0|86 |
| chr6_3 | exon | 26634019 | 26634249 | 26634019 | ID=Msa0946210-mRNA-1:exon:7371;Parent=Msa0946210-mRNA-1 |
| chr6_3 | exon | 26635035 | 26635064 | 26635035 | ID=Msa0946210-mRNA-1:exon:7372;Parent=Msa0946210-mRNA-1 |
| chr6_3 | CDS | 26634019 | 26634249 | 26634019 | ID=Msa0946210-mRNA-1:cds;Parent=Msa0946210-mRNA-1 |
| chr6_3 | CDS | 26635035 | 26635064 | 26635035 | ID=Msa0946210-mRNA-1:cds;Parent=Msa0946210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
