AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1348400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348400 MtrunA17_Chr6g0457921 94.286 210 12 0 1 210 1 210 1.28e-141 400
Msa1348400 MtrunA17_Chr7g0275011 77.041 196 43 2 10 205 16 209 2.26e-104 305
Msa1348400 MtrunA17_Chr7g0275021 71.429 210 54 2 1 205 1 209 4.78e-102 299
Msa1348400 MtrunA17_Chr4g0008851 71.000 200 53 3 5 204 12 206 1.79e-95 283
Msa1348400 MtrunA17_Chr7g0275001 70.443 203 54 2 3 205 4 200 3.02e-95 282
Msa1348400 MtrunA17_Chr7g0274991 72.928 181 48 1 24 204 28 207 2.77e-93 277
Msa1348400 MtrunA17_Chr1g0189891 67.164 201 61 4 8 205 7 205 1.23e-91 273
Msa1348400 MtrunA17_Chr1g0189931 66.667 201 65 2 6 205 8 207 1.47e-91 273
Msa1348400 MtrunA17_Chr1g0189901 65.550 209 65 4 1 205 1 206 1.82e-90 270
Msa1348400 MtrunA17_Chr1g0182811 62.069 203 74 3 10 210 14 215 1.01e-89 268
Msa1348400 MtrunA17_Chr7g0215961 61.905 210 60 4 1 205 1 195 1.18e-83 252
Msa1348400 MtrunA17_Chr1g0189921 68.504 127 35 4 1 124 1 125 3.22e-50 160
Msa1348400 MtrunA17_Chr3g0120861 41.436 181 101 4 31 210 40 216 2.50e-40 141
Msa1348400 MtrunA17_Chr5g0432101 43.275 171 92 4 29 198 33 199 1.07e-39 139
Msa1348400 MtrunA17_Chr8g0374101 43.258 178 95 5 32 204 40 216 2.14e-38 136
Msa1348400 MtrunA17_Chr5g0438621 40.237 169 96 4 31 198 32 196 2.19e-38 135
Msa1348400 MtrunA17_Chr4g0046151 40.097 207 115 6 3 205 8 209 3.57e-37 132
Msa1348400 MtrunA17_Chr5g0438641 36.735 196 119 4 2 196 5 196 8.32e-37 131
Msa1348400 MtrunA17_Chr3g0105401 39.779 181 105 4 31 210 30 207 1.77e-36 130
Msa1348400 MtrunA17_Chr8g0341001 35.545 211 128 5 1 207 1 207 1.78e-35 128
Msa1348400 MtrunA17_Chr2g0330781 40.331 181 103 4 31 210 33 209 3.42e-35 127
Msa1348400 MtrunA17_Chr4g0017431 34.742 213 133 3 1 210 1 210 4.58e-35 127
Msa1348400 MtrunA17_Chr5g0434621 41.714 175 99 3 32 205 28 200 4.86e-35 127
Msa1348400 MtrunA17_Chr5g0438631 41.071 168 94 4 31 197 30 193 8.34e-35 126
Msa1348400 MtrunA17_Chr3g0077571 37.313 201 118 6 4 204 8 200 9.02e-35 126
Msa1348400 MtrunA17_Chr4g0068441 42.458 179 98 3 27 204 34 208 3.55e-34 125
Msa1348400 MtrunA17_Chr1g0156891 38.710 217 122 6 1 210 10 222 7.30e-34 124
Msa1348400 MtrunA17_Chr5g0405831 38.068 176 104 4 24 198 39 210 2.98e-33 122
Msa1348400 MtrunA17_Chr8g0380041 37.379 206 118 6 6 207 8 206 3.88e-33 122
Msa1348400 MtrunA17_Chr3g0092131 37.561 205 123 5 8 210 3 204 3.95e-33 122
Msa1348400 MtrunA17_Chr3g0086641 36.585 205 119 6 8 207 15 213 1.76e-32 120
Msa1348400 MtrunA17_Chr2g0294301 38.191 199 117 3 4 201 12 205 2.49e-32 120
Msa1348400 MtrunA17_Chr5g0405821 34.928 209 125 6 4 205 14 218 3.17e-32 119
Msa1348400 MtrunA17_Chr2g0283191 34.742 213 127 6 4 208 9 217 4.55e-32 119
Msa1348400 MtrunA17_Chr8g0371491 36.066 183 111 5 24 205 32 209 3.90e-31 116
Msa1348400 MtrunA17_Chr3g0131321 39.326 178 99 3 30 202 35 208 4.73e-31 117
Msa1348400 MtrunA17_Chr1g0156921 38.953 172 97 5 25 195 39 203 5.52e-31 116
Msa1348400 MtrunA17_Chr1g0156901 39.227 181 101 5 31 206 52 228 6.21e-31 116
Msa1348400 MtrunA17_Chr3g0085881 39.247 186 107 4 21 205 26 206 1.44e-30 115
Msa1348400 MtrunA17_Chr2g0285061 36.364 187 115 3 22 207 25 208 3.08e-30 114
Msa1348400 MtrunA17_Chr8g0380031 35.196 179 113 2 29 207 84 259 5.13e-30 114
Msa1348400 MtrunA17_Chr2g0320671 37.158 183 107 6 1 179 1 179 2.20e-29 112
Msa1348400 MtrunA17_Chr8g0371471 34.659 176 110 4 31 205 43 214 4.74e-29 111
Msa1348400 MtrunA17_Chr8g0371481 36.158 177 107 5 31 205 43 215 5.98e-29 111
Msa1348400 MtrunA17_Chr4g0060811 38.674 181 107 4 32 210 30 208 6.02e-29 111
Msa1348400 MtrunA17_Chr3g0099161 39.181 171 93 5 7 170 73 239 8.86e-29 111
Msa1348400 MtrunA17_Chr1g0156911 37.569 181 104 5 31 206 39 215 1.78e-28 109
Msa1348400 MtrunA17_Chr2g0284921 36.464 181 111 4 29 207 34 212 1.92e-28 109
Msa1348400 MtrunA17_Chr7g0229591 35.577 208 126 6 1 205 1 203 2.48e-28 106
Msa1348400 MtrunA17_Chr4g0027521 36.275 204 122 6 4 205 3 200 2.54e-28 109
Msa1348400 MtrunA17_Chr3g0142941 34.239 184 112 5 30 210 48 225 4.95e-28 108
Msa1348400 MtrunA17_Chr5g0396511 36.571 175 109 2 31 205 48 220 1.76e-27 107
Msa1348400 MtrunA17_Chr2g0284951 37.363 182 109 4 19 199 24 201 2.92e-27 106
Msa1348400 MtrunA17_Chr1g0157001 36.111 180 105 4 34 210 41 213 3.87e-27 106
Msa1348400 MtrunA17_Chr5g0444401 38.636 176 96 5 2 170 5 175 6.08e-27 105
Msa1348400 MtrunA17_Chr3g0099151 36.994 173 100 4 5 170 64 234 7.01e-27 106
Msa1348400 MtrunA17_Chr1g0156931 33.488 215 133 7 1 210 9 218 1.69e-26 104
Msa1348400 MtrunA17_Chr2g0294311 38.043 184 92 6 32 201 35 210 2.02e-26 104
Msa1348400 MtrunA17_Chr8g0370951 36.316 190 105 8 32 210 34 218 1.25e-25 102
Msa1348400 MtrunA17_Chr3g0099231 36.471 170 97 5 7 170 10 174 1.29e-25 102
Msa1348400 MtrunA17_Chr2g0284941 33.333 201 125 5 4 199 5 201 1.31e-25 102
Msa1348400 MtrunA17_Chr2g0284991 34.574 188 118 4 21 207 26 209 2.22e-25 101
Msa1348400 MtrunA17_Chr3g0077581 35.326 184 114 4 29 210 36 216 6.26e-25 100
Msa1348400 MtrunA17_Chr8g0370981 36.416 173 102 5 7 173 23 193 7.97e-24 97.8
Msa1348400 MtrunA17_Chr2g0285001 35.450 189 116 5 21 207 26 210 4.87e-23 95.1
Msa1348400 MtrunA17_Chr3g0142921 34.946 186 114 6 27 210 35 215 9.84e-23 94.4
Msa1348400 MtrunA17_Chr2g0301641 33.649 211 125 7 4 210 16 215 2.67e-22 93.6
Msa1348400 MtrunA17_Chr5g0437421 32.065 184 112 6 26 205 30 204 7.82e-22 91.7
Msa1348400 MtrunA17_Chr8g0344941 34.054 185 106 6 28 207 40 213 1.08e-20 89.0
Msa1348400 MtrunA17_Chr5g0420811 33.146 178 105 6 32 207 36 201 2.15e-20 87.8
Msa1348400 MtrunA17_Chr8g0349301 33.889 180 100 6 31 207 39 202 3.05e-20 87.0
Msa1348400 MtrunA17_Chr8g0349341 40.541 148 77 6 31 174 39 179 4.27e-20 87.0
Msa1348400 MtrunA17_Chr6g0469511 43.363 113 61 3 30 141 31 141 6.94e-20 82.0
Msa1348400 MtrunA17_Chr6g0455661 47.059 102 46 3 32 133 34 127 7.50e-20 87.0
Msa1348400 MtrunA17_Chr4g0027561 42.636 129 69 4 1 126 1 127 9.84e-20 82.0
Msa1348400 MtrunA17_Chr8g0370971 43.548 124 56 5 7 121 16 134 1.33e-19 82.0
Msa1348400 MtrunA17_Chr8g0349321 34.503 171 92 6 31 197 39 193 1.91e-18 82.4
Msa1348400 MtrunA17_Chr3g0085231 34.302 172 103 6 32 199 34 199 1.97e-17 79.3
Msa1348400 MtrunA17_Chr8g0344931 35.616 146 84 5 29 171 37 175 3.88e-17 78.6
Msa1348400 MtrunA17_Chr2g0321991 48.235 85 42 2 32 115 36 119 8.53e-16 70.9
Msa1348400 MtrunA17_Chr8g0349331 42.017 119 62 4 31 147 37 150 5.64e-15 72.4
Msa1348400 MtrunA17_Chr2g0283481 29.907 214 126 9 10 210 28 230 1.50e-14 71.6
Msa1348400 MtrunA17_Chr7g0266061 30.000 180 105 9 21 199 34 193 8.77e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1348400 AT5G18430.1 67.633 207 58 4 1 204 3 203 5.13e-93 276
Msa1348400 AT3G04290.1 66.190 210 66 2 1 210 5 209 2.18e-91 273
Msa1348400 AT5G33370.2 68.449 187 58 1 24 210 25 210 8.60e-90 267
Msa1348400 AT5G33370.1 69.780 182 54 1 24 205 25 205 5.13e-89 266
Msa1348400 AT4G28780.1 69.492 177 52 2 28 204 30 204 6.42e-86 258
Msa1348400 AT3G50400.1 46.667 180 90 6 31 205 36 214 3.99e-44 151
Msa1348400 AT2G42990.1 41.436 181 101 4 31 210 30 206 7.76e-40 139
Msa1348400 AT3G16370.1 42.135 178 98 4 31 207 32 205 8.57e-39 137
Msa1348400 AT2G23540.1 43.293 164 90 3 31 191 50 213 3.90e-38 136
Msa1348400 AT4G16230.1 41.000 200 108 5 8 201 6 201 1.77e-37 131
Msa1348400 AT4G26790.1 42.262 168 92 4 31 197 31 194 3.55e-37 132
Msa1348400 AT4G26790.2 42.262 168 92 4 31 197 31 194 3.55e-37 132
Msa1348400 AT5G37690.1 43.333 180 99 3 32 210 30 207 1.25e-36 131
Msa1348400 AT2G04570.1 38.693 199 112 7 1 196 1 192 3.36e-36 130
Msa1348400 AT5G41890.1 37.559 213 120 5 2 206 7 214 3.54e-36 130
Msa1348400 AT5G45960.1 38.068 176 104 4 31 205 49 220 5.45e-36 130
Msa1348400 AT1G06990.1 39.773 176 101 4 31 205 39 210 1.75e-35 128
Msa1348400 AT5G45950.1 38.095 168 100 4 29 196 40 203 2.27e-33 123
Msa1348400 AT1G58430.1 39.560 182 105 5 31 210 37 215 5.71e-33 122
Msa1348400 AT5G42170.1 36.313 179 106 4 30 207 51 222 6.31e-33 122
Msa1348400 AT1G29660.1 36.000 200 123 3 9 207 12 207 3.28e-32 120
Msa1348400 AT2G24560.2 37.438 203 110 7 8 204 9 200 5.37e-32 118
Msa1348400 AT1G75890.2 36.957 184 109 6 24 205 43 221 8.05e-32 119
Msa1348400 AT5G03820.1 36.500 200 119 5 10 205 11 206 8.73e-32 119
Msa1348400 AT2G24560.1 37.438 203 110 7 8 204 9 200 1.28e-31 118
Msa1348400 AT5G03820.2 36.500 200 119 5 10 205 39 234 1.35e-31 119
Msa1348400 AT1G75890.3 36.957 184 109 6 24 205 72 250 1.43e-31 119
Msa1348400 AT5G37690.2 40.556 180 96 4 32 210 30 199 4.86e-31 116
Msa1348400 AT1G74460.1 36.715 207 125 6 6 210 2 204 6.59e-31 116
Msa1348400 AT5G08460.1 36.869 198 123 2 7 204 28 223 7.13e-31 117
Msa1348400 AT2G40250.1 43.448 145 79 3 33 176 40 182 1.01e-30 116
Msa1348400 AT5G45670.1 35.407 209 129 4 1 207 1 205 1.71e-30 115
Msa1348400 AT5G03810.1 35.354 198 120 5 12 205 10 203 1.77e-30 115
Msa1348400 AT2G31540.1 40.909 176 91 6 31 204 37 201 2.65e-30 115
Msa1348400 AT1G29670.1 35.266 207 127 4 4 207 5 207 2.80e-30 115
Msa1348400 AT1G29670.2 35.266 207 127 4 4 207 73 275 5.06e-30 115
Msa1348400 AT4G18970.1 38.462 182 104 4 29 207 28 204 8.17e-30 113
Msa1348400 AT3G43570.1 35.638 188 113 4 10 196 11 191 8.57e-30 112
Msa1348400 AT1G75880.1 32.701 211 123 4 2 204 18 217 8.71e-30 114
Msa1348400 AT4G18970.2 38.462 182 104 4 29 207 28 204 1.18e-29 114
Msa1348400 AT1G75890.1 34.518 197 109 7 24 205 43 234 3.35e-29 112
Msa1348400 AT1G58520.3 37.288 177 103 4 21 196 22 191 3.69e-29 111
Msa1348400 AT1G58525.1 37.288 177 103 4 21 196 22 191 3.69e-29 111
Msa1348400 AT2G19050.2 34.615 182 110 3 29 210 31 203 4.29e-29 110
Msa1348400 AT5G22810.1 35.870 184 110 5 31 210 36 215 4.91e-29 111
Msa1348400 AT3G53100.1 37.870 169 102 3 12 179 12 178 5.41e-29 111
Msa1348400 AT1G75880.2 32.701 211 122 5 2 204 18 216 5.99e-29 111
Msa1348400 AT2G19050.1 34.637 179 108 3 29 207 31 200 1.18e-28 110
Msa1348400 AT1G71691.3 38.983 177 102 5 29 204 55 226 1.21e-28 109
Msa1348400 AT1G20120.1 40.136 147 85 3 31 176 80 224 1.22e-28 111
Msa1348400 AT4G30140.1 38.674 181 100 5 21 201 27 196 1.52e-28 110
Msa1348400 AT3G43550.1 36.158 177 105 4 21 196 22 191 2.39e-28 108
Msa1348400 AT1G71250.1 34.857 175 112 1 30 204 42 214 2.43e-28 110
Msa1348400 AT2G30220.1 41.060 151 85 4 31 179 35 183 3.02e-28 109
Msa1348400 AT2G19060.1 35.393 178 104 5 29 205 30 197 3.02e-28 109
Msa1348400 AT1G71691.2 39.205 176 101 5 30 204 56 226 3.34e-28 109
Msa1348400 AT1G59406.1 35.079 191 116 4 7 196 8 191 4.67e-28 108
Msa1348400 AT1G59030.1 35.079 191 116 4 7 196 8 191 4.67e-28 108
Msa1348400 AT1G58725.1 35.079 191 116 4 7 196 8 191 4.67e-28 108
Msa1348400 AT3G14820.1 36.364 187 108 5 23 205 26 205 4.76e-28 108
Msa1348400 AT2G30310.1 41.060 151 85 4 31 179 36 184 1.33e-27 107
Msa1348400 AT2G19010.1 33.333 204 123 6 3 205 6 197 3.53e-27 106
Msa1348400 AT5G15720.2 38.824 170 99 3 30 197 31 197 3.71e-27 105
Msa1348400 AT1G20135.1 35.079 191 115 6 12 197 9 195 6.41e-27 105
Msa1348400 AT2G19010.2 33.333 204 123 6 3 205 36 227 6.72e-27 106
Msa1348400 AT5G15720.1 38.824 170 99 3 30 197 31 197 1.14e-26 105
Msa1348400 AT1G20132.1 38.312 154 91 4 24 176 57 207 1.70e-26 105
Msa1348400 AT1G75900.1 35.583 163 94 5 31 192 45 197 4.32e-25 100
Msa1348400 AT1G33811.1 36.612 183 111 4 24 204 29 208 4.79e-25 100
Msa1348400 AT1G73610.1 35.870 184 112 5 24 205 30 209 2.57e-24 98.6
Msa1348400 AT4G16220.1 50.000 126 52 5 1 121 1 120 1.95e-23 94.4
Msa1348400 AT1G75920.2 30.732 205 125 6 10 205 6 202 4.01e-23 95.5
Msa1348400 AT5G63170.1 34.270 178 109 6 31 205 30 202 4.18e-23 95.5
Msa1348400 AT4G10950.2 33.146 178 117 2 30 207 72 247 4.78e-23 95.9
Msa1348400 AT2G03980.2 39.456 147 82 5 30 172 44 187 4.35e-22 92.8
Msa1348400 AT2G03980.3 39.456 147 82 5 30 172 44 187 4.35e-22 92.8
Msa1348400 AT2G03980.1 39.456 147 82 5 30 172 44 187 4.35e-22 92.8
Msa1348400 AT2G03980.4 39.456 147 82 5 30 172 44 187 4.35e-22 92.8
Msa1348400 AT1G53920.1 34.254 181 100 6 3 171 14 187 8.03e-21 89.7
Msa1348400 AT1G20130.1 36.774 155 85 6 33 176 208 360 8.06e-21 90.5
Msa1348400 AT1G20130.2 36.774 155 85 6 33 176 188 340 1.05e-20 90.1
Msa1348400 AT4G10950.1 32.961 179 112 4 30 207 72 243 2.88e-20 88.2
Msa1348400 AT5G55050.1 33.333 183 110 6 32 207 42 219 3.27e-20 87.8
Msa1348400 AT1G75920.1 28.636 220 125 7 10 205 1 212 1.87e-19 85.5
Msa1348400 AT1G75910.1 33.758 157 93 4 31 182 30 180 6.96e-19 84.0
Msa1348400 AT2G04020.1 36.735 147 87 4 30 172 44 188 1.04e-18 82.0
Msa1348400 AT2G04020.2 36.735 147 87 4 30 172 44 188 2.08e-18 82.4
Msa1348400 AT1G53940.1 33.871 186 101 10 31 207 41 213 5.15e-18 80.9
Msa1348400 AT1G71120.1 35.135 185 102 8 31 210 33 204 1.23e-17 80.5
Msa1348400 AT1G53940.2 36.585 164 85 8 31 188 41 191 1.33e-17 80.5
Msa1348400 AT5G40990.1 31.746 189 109 7 30 210 38 214 6.32e-17 78.6
Msa1348400 AT1G23500.1 32.461 191 113 7 20 205 27 206 7.73e-15 72.4
Msa1348400 AT1G53990.1 31.361 169 96 6 31 196 37 188 2.27e-14 71.2
Msa1348400 AT1G75930.1 29.508 183 120 6 31 210 31 207 5.01e-14 70.1
Msa1348400 AT3G09930.2 30.857 175 101 8 27 199 37 193 2.55e-13 68.2
Msa1348400 AT3G09930.1 30.857 175 101 8 27 199 37 193 2.55e-13 68.2
Msa1348400 AT5G03610.1 27.149 221 127 9 7 212 8 209 2.70e-13 68.2
Msa1348400 AT1G28600.2 30.870 230 111 13 1 206 1 206 3.18e-13 66.6
Msa1348400 AT1G28600.1 31.532 222 104 13 1 198 1 198 3.44e-12 65.1
Msa1348400 AT1G75920.4 27.742 155 99 5 56 205 28 174 7.75e-12 63.5
Msa1348400 AT1G28580.1 35.849 159 76 11 28 171 36 183 4.82e-11 61.6
Msa1348400 AT1G28570.1 31.579 190 101 11 1 171 1 180 6.70e-11 61.2

Find 35 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGAATTATCATTAA+AGG 0.221241 tig0010414:-49879 Msa1348400:intergenic
AATTCCAGCTGAAGCAAAAT+TGG 0.255973 tig0010414:-49263 Msa1348400:intergenic
CCAAGAACATTCTTAGTGTT+TGG 0.281405 tig0010414:+48409 Msa1348400:CDS
ATAAGATACTTGACATATTC+AGG 0.294015 tig0010414:-49822 Msa1348400:intergenic
CCAAACACTAAGAATGTTCT+TGG 0.305388 tig0010414:-48409 Msa1348400:intergenic
GGAGATTCACTTGTTGATAA+TGG 0.312652 tig0010414:+48430 Msa1348400:CDS
TGACGAGACCTTGCAGAATA+AGG 0.321945 tig0010414:-49789 Msa1348400:intergenic
CTTAATTCAGGGCTTAAGTA+TGG 0.326158 tig0010414:-49217 Msa1348400:intergenic
ATCAAAGAATTATCATTAAA+GGG 0.352429 tig0010414:-49878 Msa1348400:intergenic
AGTAGGTTAAGTGCTCTTAT+TGG 0.359500 tig0010414:+49678 Msa1348400:CDS
CAAAGATGCCATTGAAAATG+AGG 0.424225 tig0010414:-48320 Msa1348400:intergenic
AGAGGAGAAAAGCTTCTAGT+TGG 0.427534 tig0010414:+49238 Msa1348400:CDS
TAAGAGCACTTAACCTACTT+TGG 0.431627 tig0010414:-49674 Msa1348400:intergenic
TAAACTTAACTGATAAAATC+AGG 0.445628 tig0010414:-48562 Msa1348400:intergenic
TACTTAAGCCCTGAATTAAG+AGG 0.450132 tig0010414:+49220 Msa1348400:CDS
GTTGATAATCAATACCATAA+GGG 0.451249 tig0010414:-48495 Msa1348400:intergenic
CAACCATCTCATAGACCAAC+TGG 0.454129 tig0010414:+48514 Msa1348400:CDS
TAATGGAAATAACAATTACT+TGG 0.456317 tig0010414:+48447 Msa1348400:CDS
GTACAACTAATCAAAAGCTT+AGG 0.462358 tig0010414:+49918 Msa1348400:three_prime_UTR
ATTTCTTAAAATTCTTGCTA+AGG 0.464569 tig0010414:-49956 Msa1348400:intergenic
ATCAGGAATATTGTAGCCAT+TGG 0.467892 tig0010414:-48545 Msa1348400:intergenic
GGTTGATAATCAATACCATA+AGG 0.491148 tig0010414:-48496 Msa1348400:intergenic
GGGCTTAAGTATGGCAATGT+TGG 0.506421 tig0010414:-49208 Msa1348400:intergenic
CACAAAATCATTGCCACCAA+CGG 0.525761 tig0010414:-49748 Msa1348400:intergenic
CTTGTTCTCATAACCGTTGG+TGG 0.534126 tig0010414:+49735 Msa1348400:CDS
TTGATAATCAATACCATAAG+GGG 0.553672 tig0010414:-48494 Msa1348400:intergenic
CTACCAGTTGGTCTATGAGA+TGG 0.564585 tig0010414:-48517 Msa1348400:intergenic
ATTGGAATACTCAATGACAC+TGG 0.571915 tig0010414:+49283 Msa1348400:CDS
ACTTGGTGCCTTATTCTGCA+AGG 0.583391 tig0010414:+49781 Msa1348400:CDS
GCACTTGTTCTCATAACCGT+TGG 0.594141 tig0010414:+49732 Msa1348400:CDS
GGGTGCATCAGCACGTGCAG+TGG 0.594910 tig0010414:-48473 Msa1348400:intergenic
CCAACTGGTAGATTCTCCAA+TGG 0.638927 tig0010414:+48529 Msa1348400:CDS
TTGGAATACTCAATGACACT+GGG 0.640433 tig0010414:+49284 Msa1348400:CDS
CCATTGGAGAATCTACCAGT+TGG 0.651226 tig0010414:-48529 Msa1348390:intergenic
TGATAATCAATACCATAAGG+GGG 0.707998 tig0010414:-48493 Msa1348390:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTAAAATAAATAAAAAA+TGG + tig0010414:49418-49437 Msa1348400:intron 0.0%
!! TAATTAAAATAAATAAAAAA+TGG + tig0010414:49418-49437 Msa1348400:intron 0.0%
!! TATTAAGTAAAAATTAAAAC+CGG + tig0010414:48819-48838 Msa1348400:intron 10.0%
!!! AAATGGTTTAAATATATTTT+AGG + tig0010414:49435-49454 Msa1348400:intron 10.0%
!!! GTGAATTTTTTTTTTTTTTT+AGG - tig0010414:49537-49556 Msa1348400:intergenic 10.0%
!! TATTAAGTAAAAATTAAAAC+CGG + tig0010414:48819-48838 Msa1348400:intron 10.0%
!!! AAATGGTTTAAATATATTTT+AGG + tig0010414:49435-49454 Msa1348400:intron 10.0%
!!! GTGAATTTTTTTTTTTTTTT+AGG - tig0010414:49537-49556 Msa1348400:intergenic 10.0%
!! TTCATTTGATTATACAAAAA+GGG - tig0010414:49114-49133 Msa1348400:intergenic 15.0%
!! ATGATTAGAGTATATAAAAT+TGG - tig0010414:49349-49368 Msa1348400:intergenic 15.0%
!! ATCAAAGAATTATCATTAAA+GGG - tig0010414:49881-49900 Msa1348400:intergenic 15.0%
!! AATCAAAGAATTATCATTAA+AGG - tig0010414:49882-49901 Msa1348400:intergenic 15.0%
!!! TTGATTAATATACATCTTTT+AGG + tig0010414:49896-49915 Msa1348400:exon 15.0%
!! TTCATTTGATTATACAAAAA+GGG - tig0010414:49114-49133 Msa1348400:intergenic 15.0%
!! ATGATTAGAGTATATAAAAT+TGG - tig0010414:49349-49368 Msa1348400:intergenic 15.0%
!! ATCAAAGAATTATCATTAAA+GGG - tig0010414:49881-49900 Msa1348400:intergenic 15.0%
!! AATCAAAGAATTATCATTAA+AGG - tig0010414:49882-49901 Msa1348400:intergenic 15.0%
!!! TTGATTAATATACATCTTTT+AGG + tig0010414:49896-49915 Msa1348400:exon 15.0%
!! TAATGGAAATAACAATTACT+TGG + tig0010414:48447-48466 Msa1348400:CDS 20.0%
!! TAAACTTAACTGATAAAATC+AGG - tig0010414:48565-48584 Msa1348400:intergenic 20.0%
!! AAATGAATGTTGAAACAAAA+GGG - tig0010414:48635-48654 Msa1348400:intergenic 20.0%
!! TAAATGAATGTTGAAACAAA+AGG - tig0010414:48636-48655 Msa1348400:intergenic 20.0%
!! TTCAACATTCATTTATTTGA+AGG + tig0010414:48641-48660 Msa1348400:intron 20.0%
!! ATAAAAATGCATCTTATAAC+TGG - tig0010414:48672-48691 Msa1348400:intergenic 20.0%
!!! TTTAGCAATGTTTTAAAAAC+CGG + tig0010414:48709-48728 Msa1348400:intron 20.0%
!!! TTTTTTTAGGCAAAAAGAAA+TGG - tig0010414:49042-49061 Msa1348400:intergenic 20.0%
!!! AAGAAATGAATGCTTTTTTT+AGG - tig0010414:49055-49074 Msa1348400:intergenic 20.0%
!! GTTCATTTGATTATACAAAA+AGG - tig0010414:49115-49134 Msa1348400:intergenic 20.0%
!!! CTAACTAATTGAATTTTTTC+AGG + tig0010414:49166-49185 Msa1348400:intron 20.0%
!!! TAATTATGTATTGGTGTTTA+AGG - tig0010414:49404-49423 Msa1348400:intergenic 20.0%
!! TGAAAAACGAGAAAATTTAT+AGG - tig0010414:49493-49512 Msa1348400:intergenic 20.0%
!!! TATAAATTTTCTCGTTTTTC+AGG + tig0010414:49492-49511 Msa1348400:intron 20.0%
!! TAATGGAAATAACAATTACT+TGG + tig0010414:48447-48466 Msa1348400:CDS 20.0%
!! TAAACTTAACTGATAAAATC+AGG - tig0010414:48565-48584 Msa1348400:intergenic 20.0%
!! AAATGAATGTTGAAACAAAA+GGG - tig0010414:48635-48654 Msa1348400:intergenic 20.0%
!! TAAATGAATGTTGAAACAAA+AGG - tig0010414:48636-48655 Msa1348400:intergenic 20.0%
!! TTCAACATTCATTTATTTGA+AGG + tig0010414:48641-48660 Msa1348400:intron 20.0%
!! ATAAAAATGCATCTTATAAC+TGG - tig0010414:48672-48691 Msa1348400:intergenic 20.0%
!!! TTTAGCAATGTTTTAAAAAC+CGG + tig0010414:48709-48728 Msa1348400:intron 20.0%
!!! TTTTTTTAGGCAAAAAGAAA+TGG - tig0010414:49042-49061 Msa1348400:intergenic 20.0%
!!! AAGAAATGAATGCTTTTTTT+AGG - tig0010414:49055-49074 Msa1348400:intergenic 20.0%
!! GTTCATTTGATTATACAAAA+AGG - tig0010414:49115-49134 Msa1348400:intergenic 20.0%
!!! CTAACTAATTGAATTTTTTC+AGG + tig0010414:49166-49185 Msa1348400:intron 20.0%
!!! TAATTATGTATTGGTGTTTA+AGG - tig0010414:49404-49423 Msa1348400:intergenic 20.0%
!! TGAAAAACGAGAAAATTTAT+AGG - tig0010414:49493-49512 Msa1348400:intergenic 20.0%
!!! TATAAATTTTCTCGTTTTTC+AGG + tig0010414:49492-49511 Msa1348400:intron 20.0%
!!! CTATTGTTTTTAGAAATGTG+TGG - tig0010414:48287-48306 None:intergenic 25.0%
!!! TTGGAGGAATATTTTTTCAT+GGG + tig0010414:48374-48393 Msa1348400:CDS 25.0%
!! TTGATAATCAATACCATAAG+GGG - tig0010414:48497-48516 Msa1348400:intergenic 25.0%
!!! GTTGATAATCAATACCATAA+GGG - tig0010414:48498-48517 Msa1348400:intergenic 25.0%
!!! AATAGAGTTGGTGATATTTT+AGG + tig0010414:48738-48757 Msa1348400:intron 25.0%
!!! ATAGAGTTGGTGATATTTTA+GGG + tig0010414:48739-48758 Msa1348400:intron 25.0%
! TAACCTATTGAACCATAAAT+CGG - tig0010414:48907-48926 Msa1348400:intergenic 25.0%
! CAAATGTGAATGAAATTTGA+AGG - tig0010414:49084-49103 Msa1348400:intergenic 25.0%
!!! ACTGCAAAATTTTAAAGTTG+AGG + tig0010414:49555-49574 Msa1348400:intron 25.0%
!! TTTTGTGAATAACTACTACT+TGG + tig0010414:49764-49783 Msa1348400:CDS 25.0%
! ATAAGATACTTGACATATTC+AGG - tig0010414:49825-49844 Msa1348400:intergenic 25.0%
!!! CTATTGTTTTTAGAAATGTG+TGG - tig0010414:48287-48306 Msa1348400:intergenic 25.0%
!!! TTGGAGGAATATTTTTTCAT+GGG + tig0010414:48374-48393 Msa1348400:CDS 25.0%
!! TTGATAATCAATACCATAAG+GGG - tig0010414:48497-48516 Msa1348400:intergenic 25.0%
!!! GTTGATAATCAATACCATAA+GGG - tig0010414:48498-48517 Msa1348400:intergenic 25.0%
!!! AATAGAGTTGGTGATATTTT+AGG + tig0010414:48738-48757 Msa1348400:intron 25.0%
!!! ATAGAGTTGGTGATATTTTA+GGG + tig0010414:48739-48758 Msa1348400:intron 25.0%
! TAACCTATTGAACCATAAAT+CGG - tig0010414:48907-48926 Msa1348400:intergenic 25.0%
! CAAATGTGAATGAAATTTGA+AGG - tig0010414:49084-49103 Msa1348400:intergenic 25.0%
!!! ACTGCAAAATTTTAAAGTTG+AGG + tig0010414:49555-49574 Msa1348400:intron 25.0%
!! TTTTGTGAATAACTACTACT+TGG + tig0010414:49764-49783 Msa1348400:CDS 25.0%
! ATAAGATACTTGACATATTC+AGG - tig0010414:49825-49844 Msa1348400:intergenic 25.0%
!! TTTTTAGAAATGTGTGGATG+TGG - tig0010414:48281-48300 None:intergenic 30.0%
! TTTCAAAGCCTCATTTTCAA+TGG + tig0010414:48312-48331 Msa1348400:exon 30.0%
!!! GCTTTGTTCATTTTAGTTGT+TGG + tig0010414:48355-48374 Msa1348400:CDS 30.0%
!!! TTGTTCATTTTAGTTGTTGG+AGG + tig0010414:48358-48377 Msa1348400:CDS 30.0%
!!! GTTGGAGGAATATTTTTTCA+TGG + tig0010414:48373-48392 Msa1348400:CDS 30.0%
TGATAATCAATACCATAAGG+GGG - tig0010414:48496-48515 Msa1348400:intergenic 30.0%
!! GGTTGATAATCAATACCATA+AGG - tig0010414:48499-48518 Msa1348400:intergenic 30.0%
!! TTTTAGGGAAATGATGCAAT+TGG + tig0010414:48754-48773 Msa1348400:intron 30.0%
CAGTTCAATCACAGTTAAAT+CGG + tig0010414:48783-48802 Msa1348400:intron 30.0%
AACATAAGGATCAAACCAAT+CGG + tig0010414:48873-48892 Msa1348400:intron 30.0%
CAATCAATTGAACCAAAAAC+AGG - tig0010414:48936-48955 Msa1348400:intergenic 30.0%
TTGGTTCAATTGATTGAATC+TGG + tig0010414:48940-48959 Msa1348400:intron 30.0%
TCAATTGATTGAATCTGGTT+CGG + tig0010414:48945-48964 Msa1348400:intron 30.0%
AAATGGATGTTGTAACAAGA+AGG - tig0010414:49025-49044 Msa1348400:intergenic 30.0%
ATCAAATGAACATTGACACA+TGG + tig0010414:49124-49143 Msa1348400:intron 30.0%
!!! ATTTTTTCAGGTCAGAAACT+TGG + tig0010414:49178-49197 Msa1348400:intron 30.0%
CGAAAAGTGGTATATTTGTA+GGG - tig0010414:49462-49481 Msa1348400:intergenic 30.0%
!!! ATTTTCAAGAGTACCAAAGT+AGG + tig0010414:49661-49680 Msa1348400:CDS 30.0%
! GTATTACCTGCAAAAGTTTT+TGG - tig0010414:49857-49876 Msa1348400:intergenic 30.0%
GTACAACTAATCAAAAGCTT+AGG + tig0010414:49918-49937 Msa1348400:three_prime_UTR 30.0%
!! TTTTTAGAAATGTGTGGATG+TGG - tig0010414:48281-48300 Msa1348400:intergenic 30.0%
! TTTCAAAGCCTCATTTTCAA+TGG + tig0010414:48312-48331 Msa1348400:exon 30.0%
!!! GCTTTGTTCATTTTAGTTGT+TGG + tig0010414:48355-48374 Msa1348400:CDS 30.0%
!!! TTGTTCATTTTAGTTGTTGG+AGG + tig0010414:48358-48377 Msa1348400:CDS 30.0%
!!! GTTGGAGGAATATTTTTTCA+TGG + tig0010414:48373-48392 Msa1348400:CDS 30.0%
TGATAATCAATACCATAAGG+GGG - tig0010414:48496-48515 Msa1348400:intergenic 30.0%
!! GGTTGATAATCAATACCATA+AGG - tig0010414:48499-48518 Msa1348400:intergenic 30.0%
!! TTTTAGGGAAATGATGCAAT+TGG + tig0010414:48754-48773 Msa1348400:intron 30.0%
CAGTTCAATCACAGTTAAAT+CGG + tig0010414:48783-48802 Msa1348400:intron 30.0%
AACATAAGGATCAAACCAAT+CGG + tig0010414:48873-48892 Msa1348400:intron 30.0%
CAATCAATTGAACCAAAAAC+AGG - tig0010414:48936-48955 Msa1348400:intergenic 30.0%
TTGGTTCAATTGATTGAATC+TGG + tig0010414:48940-48959 Msa1348400:intron 30.0%
TCAATTGATTGAATCTGGTT+CGG + tig0010414:48945-48964 Msa1348400:intron 30.0%
AAATGGATGTTGTAACAAGA+AGG - tig0010414:49025-49044 Msa1348400:intergenic 30.0%
ATCAAATGAACATTGACACA+TGG + tig0010414:49124-49143 Msa1348400:intron 30.0%
!!! ATTTTTTCAGGTCAGAAACT+TGG + tig0010414:49178-49197 Msa1348400:intron 30.0%
CGAAAAGTGGTATATTTGTA+GGG - tig0010414:49462-49481 Msa1348400:intergenic 30.0%
!!! ATTTTCAAGAGTACCAAAGT+AGG + tig0010414:49661-49680 Msa1348400:CDS 30.0%
! GTATTACCTGCAAAAGTTTT+TGG - tig0010414:49857-49876 Msa1348400:intergenic 30.0%
GTACAACTAATCAAAAGCTT+AGG + tig0010414:49918-49937 Msa1348400:three_prime_UTR 30.0%
CAAAGATGCCATTGAAAATG+AGG - tig0010414:48323-48342 Msa1348400:intergenic 35.0%
CCAAACACTAAGAATGTTCT+TGG - tig0010414:48412-48431 Msa1348400:intergenic 35.0%
CCAAGAACATTCTTAGTGTT+TGG + tig0010414:48409-48428 Msa1348400:CDS 35.0%
! GGAGATTCACTTGTTGATAA+TGG + tig0010414:48430-48449 Msa1348400:CDS 35.0%
ATCAGGAATATTGTAGCCAT+TGG - tig0010414:48548-48567 Msa1348400:intergenic 35.0%
AACCGGAATGAAAATAGAGT+TGG + tig0010414:48726-48745 Msa1348400:intron 35.0%
! CACCAACTCTATTTTCATTC+CGG - tig0010414:48731-48750 Msa1348400:intergenic 35.0%
GTTGAACAAGTTTCTTCAAC+CGG - tig0010414:48841-48860 Msa1348400:intergenic 35.0%
! GTTGAAGAAACTTGTTCAAC+TGG + tig0010414:48841-48860 Msa1348400:intron 35.0%
! ACTGGTTCAATGAGAACATA+AGG + tig0010414:48859-48878 Msa1348400:intron 35.0%
! AAATCGGCAAATTTTCCGAT+TGG - tig0010414:48891-48910 Msa1348400:intergenic 35.0%
!! TCGGAAAATTTGCCGATTTA+TGG + tig0010414:48892-48911 Msa1348400:intron 35.0%
!! TTGCCGATTTATGGTTCAAT+AGG + tig0010414:48901-48920 Msa1348400:intron 35.0%
CAATTGAACCAAAAACAGGT+CGG - tig0010414:48932-48951 Msa1348400:intergenic 35.0%
CTTAATTCAGGGCTTAAGTA+TGG - tig0010414:49220-49239 Msa1348400:intergenic 35.0%
TACTTAAGCCCTGAATTAAG+AGG + tig0010414:49220-49239 Msa1348400:CDS 35.0%
! GCTTTTCTCCTCTTAATTCA+GGG - tig0010414:49231-49250 Msa1348400:intergenic 35.0%
! AGCTTTTCTCCTCTTAATTC+AGG - tig0010414:49232-49251 Msa1348400:intergenic 35.0%
AATTCCAGCTGAAGCAAAAT+TGG - tig0010414:49266-49285 Msa1348400:intergenic 35.0%
! AATTTTGCTTCAGCTGGAAT+TGG + tig0010414:49265-49284 Msa1348400:CDS 35.0%
ATTGGAATACTCAATGACAC+TGG + tig0010414:49283-49302 Msa1348400:CDS 35.0%
TTGGAATACTCAATGACACT+GGG + tig0010414:49284-49303 Msa1348400:CDS 35.0%
GCGAAAAGTGGTATATTTGT+AGG - tig0010414:49463-49482 Msa1348400:intergenic 35.0%
ATAGGTACTAAAGCGAAAAG+TGG - tig0010414:49475-49494 Msa1348400:intergenic 35.0%
GAGGACTTATATTATGCACA+TGG + tig0010414:49574-49593 Msa1348400:intron 35.0%
!! TAAGAGCACTTAACCTACTT+TGG - tig0010414:49677-49696 Msa1348400:intergenic 35.0%
AGTAGGTTAAGTGCTCTTAT+TGG + tig0010414:49678-49697 Msa1348400:CDS 35.0%
! TGAGTACCAAAAACTTTTGC+AGG + tig0010414:49848-49867 Msa1348400:CDS 35.0%
CAAAGATGCCATTGAAAATG+AGG - tig0010414:48323-48342 Msa1348400:intergenic 35.0%
CCAAACACTAAGAATGTTCT+TGG - tig0010414:48412-48431 Msa1348400:intergenic 35.0%
CCAAGAACATTCTTAGTGTT+TGG + tig0010414:48409-48428 Msa1348400:CDS 35.0%
! GGAGATTCACTTGTTGATAA+TGG + tig0010414:48430-48449 Msa1348400:CDS 35.0%
ATCAGGAATATTGTAGCCAT+TGG - tig0010414:48548-48567 Msa1348400:intergenic 35.0%
AACCGGAATGAAAATAGAGT+TGG + tig0010414:48726-48745 Msa1348400:intron 35.0%
! CACCAACTCTATTTTCATTC+CGG - tig0010414:48731-48750 Msa1348400:intergenic 35.0%
GTTGAACAAGTTTCTTCAAC+CGG - tig0010414:48841-48860 Msa1348400:intergenic 35.0%
! GTTGAAGAAACTTGTTCAAC+TGG + tig0010414:48841-48860 Msa1348400:intron 35.0%
! ACTGGTTCAATGAGAACATA+AGG + tig0010414:48859-48878 Msa1348400:intron 35.0%
! AAATCGGCAAATTTTCCGAT+TGG - tig0010414:48891-48910 Msa1348400:intergenic 35.0%
!! TCGGAAAATTTGCCGATTTA+TGG + tig0010414:48892-48911 Msa1348400:intron 35.0%
!! TTGCCGATTTATGGTTCAAT+AGG + tig0010414:48901-48920 Msa1348400:intron 35.0%
CAATTGAACCAAAAACAGGT+CGG - tig0010414:48932-48951 Msa1348400:intergenic 35.0%
CTTAATTCAGGGCTTAAGTA+TGG - tig0010414:49220-49239 Msa1348400:intergenic 35.0%
TACTTAAGCCCTGAATTAAG+AGG + tig0010414:49220-49239 Msa1348400:CDS 35.0%
! GCTTTTCTCCTCTTAATTCA+GGG - tig0010414:49231-49250 Msa1348400:intergenic 35.0%
! AGCTTTTCTCCTCTTAATTC+AGG - tig0010414:49232-49251 Msa1348400:intergenic 35.0%
AATTCCAGCTGAAGCAAAAT+TGG - tig0010414:49266-49285 Msa1348400:intergenic 35.0%
! AATTTTGCTTCAGCTGGAAT+TGG + tig0010414:49265-49284 Msa1348400:CDS 35.0%
ATTGGAATACTCAATGACAC+TGG + tig0010414:49283-49302 Msa1348400:CDS 35.0%
TTGGAATACTCAATGACACT+GGG + tig0010414:49284-49303 Msa1348400:CDS 35.0%
GCGAAAAGTGGTATATTTGT+AGG - tig0010414:49463-49482 Msa1348400:intergenic 35.0%
ATAGGTACTAAAGCGAAAAG+TGG - tig0010414:49475-49494 Msa1348400:intergenic 35.0%
GAGGACTTATATTATGCACA+TGG + tig0010414:49574-49593 Msa1348400:intron 35.0%
!! TAAGAGCACTTAACCTACTT+TGG - tig0010414:49677-49696 Msa1348400:intergenic 35.0%
AGTAGGTTAAGTGCTCTTAT+TGG + tig0010414:49678-49697 Msa1348400:CDS 35.0%
! TGAGTACCAAAAACTTTTGC+AGG + tig0010414:49848-49867 Msa1348400:CDS 35.0%
! AGGTTAAACCGACCTGTTTT+TGG + tig0010414:48921-48940 Msa1348400:intron 40.0%
AGAGGAGAAAAGCTTCTAGT+TGG + tig0010414:49238-49257 Msa1348400:CDS 40.0%
CACAAAATCATTGCCACCAA+CGG - tig0010414:49751-49770 Msa1348400:intergenic 40.0%
! AGGTTAAACCGACCTGTTTT+TGG + tig0010414:48921-48940 Msa1348400:intron 40.0%
AGAGGAGAAAAGCTTCTAGT+TGG + tig0010414:49238-49257 Msa1348400:CDS 40.0%
CACAAAATCATTGCCACCAA+CGG - tig0010414:49751-49770 Msa1348400:intergenic 40.0%
CAACCATCTCATAGACCAAC+TGG + tig0010414:48514-48533 Msa1348400:CDS 45.0%
! CTACCAGTTGGTCTATGAGA+TGG - tig0010414:48520-48539 Msa1348400:intergenic 45.0%
CCATTGGAGAATCTACCAGT+TGG - tig0010414:48532-48551 Msa1348400:intergenic 45.0%
CCAACTGGTAGATTCTCCAA+TGG + tig0010414:48529-48548 Msa1348400:CDS 45.0%
GGGCTTAAGTATGGCAATGT+TGG - tig0010414:49211-49230 Msa1348400:intergenic 45.0%
GCACTTGTTCTCATAACCGT+TGG + tig0010414:49732-49751 Msa1348400:CDS 45.0%
CTTGTTCTCATAACCGTTGG+TGG + tig0010414:49735-49754 Msa1348400:CDS 45.0%
!! ACTTGGTGCCTTATTCTGCA+AGG + tig0010414:49781-49800 Msa1348400:CDS 45.0%
TGACGAGACCTTGCAGAATA+AGG - tig0010414:49792-49811 Msa1348400:intergenic 45.0%
CAACCATCTCATAGACCAAC+TGG + tig0010414:48514-48533 Msa1348400:CDS 45.0%
! CTACCAGTTGGTCTATGAGA+TGG - tig0010414:48520-48539 Msa1348400:intergenic 45.0%
CCATTGGAGAATCTACCAGT+TGG - tig0010414:48532-48551 Msa1348400:intergenic 45.0%
CCAACTGGTAGATTCTCCAA+TGG + tig0010414:48529-48548 Msa1348400:CDS 45.0%
GGGCTTAAGTATGGCAATGT+TGG - tig0010414:49211-49230 Msa1348400:intergenic 45.0%
GCACTTGTTCTCATAACCGT+TGG + tig0010414:49732-49751 Msa1348400:CDS 45.0%
CTTGTTCTCATAACCGTTGG+TGG + tig0010414:49735-49754 Msa1348400:CDS 45.0%
!! ACTTGGTGCCTTATTCTGCA+AGG + tig0010414:49781-49800 Msa1348400:CDS 45.0%
TGACGAGACCTTGCAGAATA+AGG - tig0010414:49792-49811 Msa1348400:intergenic 45.0%
!!! TATTTATTTTAATTATGTAT+TGG - tig0010414:49413-49432 Msa1348400:intergenic 5.0%
!!! TATTTATTTTAATTATGTAT+TGG - tig0010414:49413-49432 Msa1348400:intergenic 5.0%
! GGAGCCAATTTTGCTTCAGC+TGG + tig0010414:49259-49278 Msa1348400:CDS 50.0%
! GGAGCCAATTTTGCTTCAGC+TGG + tig0010414:49259-49278 Msa1348400:CDS 50.0%
! CGTGCTGATGCACCCCCTTA+TGG + tig0010414:48481-48500 Msa1348400:CDS 60.0%
! CGTGCTGATGCACCCCCTTA+TGG + tig0010414:48481-48500 Msa1348400:CDS 60.0%
GGGTGCATCAGCACGTGCAG+TGG - tig0010414:48476-48495 Msa1348400:intergenic 65.0%
GGGTGCATCAGCACGTGCAG+TGG - tig0010414:48476-48495 Msa1348400:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0010414 gene 48278 49971 48278 ID=Msa1348400;Name=Msa1348400
tig0010414 mRNA 48278 49971 48278 ID=Msa1348400-mRNA-1;Parent=Msa1348400;Name=Msa1348400-mRNA-1;_AED=0.02;_eAED=0.02;_QI=53|1|1|1|1|1|3|72|214
tig0010414 exon 48278 48574 48278 ID=Msa1348400-mRNA-1:exon:6408;Parent=Msa1348400-mRNA-1
tig0010414 exon 49188 49315 49188 ID=Msa1348400-mRNA-1:exon:6409;Parent=Msa1348400-mRNA-1
tig0010414 exon 49627 49971 49627 ID=Msa1348400-mRNA-1:exon:6410;Parent=Msa1348400-mRNA-1
tig0010414 five_prime_UTR 48278 48330 48278 ID=Msa1348400-mRNA-1:five_prime_utr;Parent=Msa1348400-mRNA-1
tig0010414 CDS 48331 48574 48331 ID=Msa1348400-mRNA-1:cds;Parent=Msa1348400-mRNA-1
tig0010414 CDS 49188 49315 49188 ID=Msa1348400-mRNA-1:cds;Parent=Msa1348400-mRNA-1
tig0010414 CDS 49627 49899 49627 ID=Msa1348400-mRNA-1:cds;Parent=Msa1348400-mRNA-1
tig0010414 three_prime_UTR 49900 49971 49900 ID=Msa1348400-mRNA-1:three_prime_utr;Parent=Msa1348400-mRNA-1
Gene Sequence

>Msa1348400

ATGGCATCTTTGTCAAGTTTTTTTGCTTTGTTCATTTTAGTTGTTGGAGGAATATTTTTTCATGGGATTGAAGCTACTCCAAGAACATTCTTAGTGTTTGGAGATTCACTTGTTGATAATGGAAATAACAATTACTTGGCTACCACTGCACGTGCTGATGCACCCCCTTATGGTATTGATTATCAACCATCTCATAGACCAACTGGTAGATTCTCCAATGGCTACAATATTCCTGATTTTATCAGTCAGAAACTTGGTGCTGAGCCAACATTGCCATACTTAAGCCCTGAATTAAGAGGAGAAAAGCTTCTAGTTGGAGCCAATTTTGCTTCAGCTGGAATTGGAATACTCAATGACACTGGGATTCAATTTATAAATATCATAAGAATGTATAGACAATATGAGTATTTTCAAGAGTACCAAAGTAGGTTAAGTGCTCTTATTGGTGCATCACAAGCAAAGACTCGTGTGAATCAAGCACTTGTTCTCATAACCGTTGGTGGCAATGATTTTGTGAATAACTACTACTTGGTGCCTTATTCTGCAAGGTCTCGTCAATATCAATTACCTGAATATGTCAAGTATCTTATCTCTGAGTACCAAAAACTTTTGCAGGTAATACTCCCTTTAATGATAATTCTTTGA
Protein sequence

>Msa1348400

MASLSSFFALFILVVGGIFFHGIEATPRTFLVFGDSLVDNGNNNYLATTARADAPPYGIDYQPSHRPTGRFSNGYNIPDFISQKLGAEPTLPYLSPELRGEKLLVGANFASAGIGILNDTGIQFINIIRMYRQYEYFQEYQSRLSALIGASQAKTRVNQALVLITVGGNDFVNNYYLVPYSARSRQYQLPEYVKYLISEYQKLLQVILPLMIIL*