AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1351920

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351920 MtrunA17_Chr7g0271391 99.216 638 5 0 1 638 1 638 0.0 1303
Msa1351920 MtrunA17_Chr7g0270601 75.776 161 38 1 12 171 6 166 4.67e-78 256
Msa1351920 MtrunA17_Chr7g0270601 49.419 172 87 0 461 632 292 463 3.25e-46 170
Msa1351920 MtrunA17_Chr3g0098211 48.718 156 76 3 19 173 176 328 2.11e-39 148
Msa1351920 MtrunA17_Chr3g0098211 44.667 150 79 2 17 164 10 157 2.62e-25 107
Msa1351920 MtrunA17_Chr3g0129561 46.980 149 79 0 17 165 55 203 3.23e-38 152
Msa1351920 MtrunA17_Chr1g0155901 43.452 168 85 4 11 169 2 168 7.77e-31 119
Msa1351920 MtrunA17_Chr4g0044701 34.286 245 129 6 19 245 48 278 5.34e-29 121
Msa1351920 MtrunA17_Chr8g0338201 37.037 162 82 5 18 165 33 188 9.05e-21 96.7
Msa1351920 MtrunA17_Chr8g0338651 35.443 158 82 4 22 165 35 186 1.20e-18 90.1
Msa1351920 MtrunA17_Chr4g0055131 35.404 161 85 4 19 165 40 195 5.07e-18 87.8
Msa1351920 MtrunA17_Chr7g0269191 46.000 100 53 1 534 632 9 108 6.87e-18 79.7
Msa1351920 MtrunA17_Chr7g0247681 38.136 118 66 3 54 165 2 118 4.51e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1351920 AT5G61190.4 58.462 260 81 5 8 265 2 236 2.02e-87 288
Msa1351920 AT5G61190.2 58.462 260 81 5 8 265 2 236 2.02e-87 288
Msa1351920 AT3G62200.1 79.762 168 34 0 10 177 21 188 2.86e-87 286
Msa1351920 AT5G61190.8 58.462 260 81 5 8 265 2 236 1.03e-86 289
Msa1351920 AT5G61190.11 58.462 260 81 5 8 265 2 236 4.74e-86 290
Msa1351920 AT5G61190.1 69.307 202 60 2 8 207 2 203 5.81e-86 290
Msa1351920 AT5G61190.10 69.307 202 60 2 8 207 2 203 7.34e-86 290
Msa1351920 AT3G62210.1 73.333 180 45 1 5 181 10 189 1.57e-85 269
Msa1351920 AT5G61190.9 69.307 202 60 2 8 207 2 203 1.70e-85 289
Msa1351920 AT5G61190.5 69.307 202 60 2 8 207 2 203 1.76e-85 289
Msa1351920 AT5G61190.6 69.307 202 60 2 8 207 2 203 1.80e-85 289
Msa1351920 AT5G61180.1 60.674 178 52 1 9 168 72 249 1.07e-69 231
Msa1351920 AT3G61028.3 45.181 166 88 3 15 177 78 243 1.95e-43 157
Msa1351920 AT3G61028.1 45.181 166 88 3 15 177 78 243 1.95e-43 157
Msa1351920 AT3G60940.1 47.429 175 83 3 12 177 76 250 4.06e-43 156
Msa1351920 AT3G60940.2 47.429 175 83 3 12 177 76 250 4.06e-43 156
Msa1351920 AT5G64710.1 42.138 159 91 1 11 168 54 212 1.19e-37 150
Msa1351920 AT5G09840.1 41.935 155 90 0 11 165 65 219 2.78e-37 149
Msa1351920 AT5G61190.7 66.055 109 35 2 101 207 1 109 2.00e-35 143
Msa1351920 AT5G61190.3 66.055 109 35 2 101 207 1 109 2.00e-35 143
Msa1351920 AT2G15560.2 41.290 155 87 3 15 165 46 200 4.59e-27 115
Msa1351920 AT2G15560.1 41.290 155 87 3 15 165 46 200 4.82e-27 115
Msa1351920 AT3G62850.1 30.841 214 131 6 9 211 230 437 6.79e-22 99.8
Msa1351920 AT3G62850.1 31.210 157 102 2 10 163 7 160 3.63e-18 88.2
Msa1351920 AT3G61028.2 40.517 116 67 2 15 128 78 193 1.05e-21 95.5
Msa1351920 AT3G62050.1 36.434 129 73 3 14 139 9 131 3.71e-20 88.2
Msa1351920 AT5G35640.1 31.111 135 88 2 17 147 32 165 7.21e-15 73.9
Msa1351920 AT3G61090.1 29.480 173 106 5 18 180 12 178 2.13e-14 72.4
Msa1351920 AT5G64710.2 41.463 82 47 1 88 168 6 87 3.71e-14 76.3
Msa1351920 AT3G62460.1 29.927 137 88 3 18 149 58 191 6.11e-12 65.9
Msa1351920 AT1G01355.1 32.450 151 96 3 28 174 11 159 1.43e-11 65.1
Msa1351920 AT3G56730.6 33.019 106 65 1 15 120 7 106 2.53e-11 63.2
Msa1351920 AT3G61100.1 28.485 165 98 5 18 170 8 164 3.05e-11 62.8
Msa1351920 AT3G56730.2 30.357 112 72 1 9 120 9 114 3.83e-11 62.8
Msa1351920 AT3G56730.3 30.357 112 72 1 9 120 9 114 3.83e-11 62.8
Msa1351920 AT1G01355.3 31.788 151 93 3 28 174 11 155 4.22e-11 63.5
Msa1351920 AT3G56730.1 32.692 104 64 1 17 120 11 108 7.02e-11 61.6
Msa1351920 AT5G64450.1 35.000 120 64 6 52 162 34 148 9.26e-11 61.6

Find 278 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGAATTATTTATTGATTT+CGG 0.150955 tig0012395:+10877 Msa1351920:CDS
GCGAATTATTTATTGATTTC+GGG 0.173410 tig0012395:+10878 Msa1351920:CDS
GGAAAACCGTTTGGTCTTAA+TGG 0.186135 tig0012395:-11502 None:intergenic
AACAGCACTCCAAAGAAATT+TGG 0.210078 tig0012395:+12187 Msa1351920:CDS
CCAATATCTGGCACAGTTCT+AGG 0.226868 tig0012395:-11634 None:intergenic
AATTCGTCGTCGGAGATAAA+TGG 0.230773 tig0012395:+12770 Msa1351920:three_prime_UTR
GTTGCAAAAGTATGGGAATT+TGG 0.231833 tig0012395:-11562 None:intergenic
GGGATTTGATTCTAGATATC+AGG 0.233096 tig0012395:+11207 Msa1351920:CDS
TCCTTGTCGACATGCTGTTC+TGG 0.237109 tig0012395:+10834 Msa1351920:CDS
AATTTCGTCCCAAATTTCTT+TGG 0.251306 tig0012395:-12196 None:intergenic
ATACTTATATAGATAAAATT+AGG 0.259196 tig0012395:+9520 Msa1351920:five_prime_UTR
TTTGCTTAGTTAACTATATA+TGG 0.262422 tig0012395:-9375 None:intergenic
GGTCTTAATGGCTGGGAATA+TGG 0.268984 tig0012395:-11490 None:intergenic
ATTTCTTTGGAGTGCTGTTT+AGG 0.279080 tig0012395:-12183 None:intergenic
GAATATGTACAAGGCCTTAT+AGG 0.288105 tig0012395:+11925 Msa1351920:CDS
CCATACCAAACTGTAGTATT+TGG 0.290881 tig0012395:-12837 None:intergenic
TTATCCGGAAATACAGCTTT+TGG 0.291189 tig0012395:+13465 Msa1351920:three_prime_UTR
TTTCAGGGTGTATTGTAAAA+TGG 0.292307 tig0012395:+13147 Msa1351920:three_prime_UTR
AGCGTCAAATGAACAAATTC+TGG 0.298140 tig0012395:-13174 None:intergenic
CTGGCTCTATATACTGAATT+TGG 0.300005 tig0012395:+13492 Msa1351920:three_prime_UTR
AAGTTTCCATTACCATAATC+AGG 0.300984 tig0012395:-12574 None:intergenic
ATACGACAGCAATTGGAAAA+AGG 0.302939 tig0012395:+9266 Msa1351920:five_prime_UTR
CAAACTCTTAATTTGCTATC+TGG 0.304458 tig0012395:+13293 Msa1351920:three_prime_UTR
ACATCCAAAAGCTGTATTTC+CGG 0.304877 tig0012395:-13469 None:intergenic
TGTACATATTCAGAAGGTTT+AGG 0.309220 tig0012395:-11913 None:intergenic
CCTAGAACTGTGCCAGATAT+TGG 0.310900 tig0012395:+11634 Msa1351920:CDS
TGCTGGTAGATCGGCAATAA+TGG 0.316014 tig0012395:+12239 Msa1351920:CDS
GCATAGCAGCACCCTGATTA+TGG 0.320572 tig0012395:+12562 Msa1351920:exon
CGGTTATCTTGAAGCCCAAC+TGG 0.322669 tig0012395:-11289 None:intergenic
ACCTCCTCATTCGCAGTTGA+TGG 0.324550 tig0012395:-10925 None:intergenic
CCGGTGTAGTTGCAAAAGTA+TGG 0.328541 tig0012395:-11570 None:intergenic
AATGGTAAGTGGGGATCTTC+AGG 0.332723 tig0012395:+11886 Msa1351920:CDS
CCCGAGTCAAACCCCGATTC+AGG 0.333358 tig0012395:+12526 Msa1351920:CDS
CCAGCATGAATTTCAGAATA+GGG 0.333740 tig0012395:-11157 None:intergenic
GCATGTGGATCGGAGCCTTT+AGG 0.345450 tig0012395:-9702 None:intergenic
ATTTAAATTTACATTTGCTT+TGG 0.350575 tig0012395:+13596 Msa1351920:three_prime_UTR
AATAATAAACTTCCCTCTAA+TGG 0.351040 tig0012395:+11868 Msa1351920:CDS
AGATCAACGAATGAACAAAA+TGG 0.352005 tig0012395:+11766 Msa1351920:CDS
ATATTTCCTTCAATCTATCT+TGG 0.354451 tig0012395:+13070 Msa1351920:three_prime_UTR
ACAAGGTATGTTTATTATGA+TGG 0.355179 tig0012395:+13324 Msa1351920:three_prime_UTR
ATGTTCAGATTGCCAATATC+TGG 0.357086 tig0012395:-11646 None:intergenic
CACTTAAAATTGCACAAGAT+TGG 0.358644 tig0012395:+13248 Msa1351920:three_prime_UTR
CCTTATTAGACTGGACTACT+TGG 0.359523 tig0012395:+12993 Msa1351920:three_prime_UTR
GATAATTGTTTACATTATTA+CGG 0.362001 tig0012395:-11309 None:intergenic
GATCCATTATGGAGCAATAA+TGG 0.362238 tig0012395:+11400 Msa1351920:CDS
CCAAGTAGTCCAGTCTAATA+AGG 0.362296 tig0012395:-12993 None:intergenic
GATCCACTTTGAGGAACATT+TGG 0.363780 tig0012395:-11349 None:intergenic
TTACCATTATTGCTCCATAA+TGG 0.363932 tig0012395:-11403 None:intergenic
TGTTCATTCGTTGATCTTAC+CGG 0.368690 tig0012395:-11760 None:intergenic
AGAATCATTCGAATAATTAC+TGG 0.374269 tig0012395:-12654 None:intergenic
AACCGTTTGGTCTTAATGGC+TGG 0.379988 tig0012395:-11498 None:intergenic
AGGAAATCATCAAAATCAAC+AGG 0.380452 tig0012395:+11432 Msa1351920:CDS
ATTGGCAATCTGAACATATC+TGG 0.381321 tig0012395:+11652 Msa1351920:CDS
CGAGCAAAATGTATATTTGT+AGG 0.381945 tig0012395:-12960 None:intergenic
TGCTGCTCAGACACAGCAAC+AGG 0.385298 tig0012395:+11129 Msa1351920:CDS
AACATTGGTGTTGCGATGCT+TGG 0.386683 tig0012395:-12037 None:intergenic
AGGAAATATCTCGACACATT+TGG 0.387421 tig0012395:-13056 None:intergenic
AGATCCCCACTTACCATTAG+AGG 0.389364 tig0012395:-11881 None:intergenic
AACATGATTAAGTGAAATTC+CGG 0.391711 tig0012395:-9844 None:intergenic
GGGAAATCATCAAAATCAAC+AGG 0.391798 tig0012395:+11453 Msa1351920:CDS
TTCATGGCTTTCGGTCCATT+TGG 0.392243 tig0012395:-11259 None:intergenic
GGAAGTGGAGCACTACTCTT+AGG 0.394120 tig0012395:-11739 None:intergenic
TCTCGTATGAATCAAACTAT+AGG 0.394834 tig0012395:+12683 Msa1351920:three_prime_UTR
AATAAATAATTCGCAGGTGC+AGG 0.398280 tig0012395:-10869 None:intergenic
CCATTGCATACGACAGCAAT+TGG 0.398911 tig0012395:+9259 Msa1351920:five_prime_UTR
TTCGTTGATCTTACCGGAAG+TGG 0.402973 tig0012395:-11754 None:intergenic
TTCGGTCCATTTGGTTGACT+CGG 0.404852 tig0012395:-11250 None:intergenic
CAGCTAAGAGTGTATGGCTT+TGG 0.407793 tig0012395:+10999 Msa1351920:CDS
AGCAAATGTAAATTTAAATA+CGG 0.409351 tig0012395:-13592 None:intergenic
CAGCTACCACCGACATTAAG+AGG 0.410098 tig0012395:-13559 None:intergenic
TAAGAGTAGTGCTCCACTTC+CGG 0.410866 tig0012395:+11741 Msa1351920:CDS
TCTTGCGTATTGCATGGGTT+TGG 0.412229 tig0012395:-9224 None:intergenic
CAAGTAAAACAACACCTATA+AGG 0.412949 tig0012395:-11939 None:intergenic
TTCGAAGTTTCAAATGTTGC+AGG 0.413026 tig0012395:+13202 Msa1351920:three_prime_UTR
TCAGAAGTCACCCCTGAATC+GGG 0.413185 tig0012395:-12538 None:intergenic
ACTCCGTTGCGGAACAGTGC+GGG 0.413493 tig0012395:-11698 None:intergenic
TATGATGTTGAATAATTATC+CGG 0.413966 tig0012395:+13450 Msa1351920:three_prime_UTR
GAGTGTGTAGGTTGATATTC+TGG 0.418613 tig0012395:-11832 None:intergenic
TATCTCCGACGACGAATTGA+AGG 0.419671 tig0012395:-12765 None:intergenic
GATCCACTGTGATGTATAAC+GGG 0.419901 tig0012395:-12881 None:intergenic
TAGTAAAGGTGAAGAGATAG+AGG 0.419928 tig0012395:-9410 None:intergenic
ACAGCACTCCAAAGAAATTT+GGG 0.420086 tig0012395:+12188 Msa1351920:CDS
CCTTGTCGACATGCTGTTCT+GGG 0.422266 tig0012395:+10835 Msa1351920:CDS
CTTCTCAGTTGGCATCATCT+TGG 0.424167 tig0012395:-11983 None:intergenic
ACATCACAGTGGATCTATCT+TGG 0.424998 tig0012395:+12889 Msa1351920:three_prime_UTR
GCGCCAATTCTGATCCATTA+TGG 0.426102 tig0012395:+11389 Msa1351920:CDS
CGAATAATTACTGGTCCAAC+TGG 0.427304 tig0012395:-12645 None:intergenic
TGAAGAGACTACACAAGATT+CGG 0.427403 tig0012395:-9343 None:intergenic
GCTCCATAATGGATCAGAAT+TGG 0.428216 tig0012395:-11392 None:intergenic
CAGCACCCTGATTATGGTAA+TGG 0.428511 tig0012395:+12568 Msa1351920:three_prime_UTR
CAACAAATACAAGTGAAAAC+TGG 0.432305 tig0012395:-13751 None:intergenic
CCAATTGCTGTCGTATGCAA+TGG 0.432591 tig0012395:-9259 None:intergenic
ATATCTGGTTATCCCAATAA+TGG 0.432994 tig0012395:+11667 Msa1351920:CDS
CTAAATTCTTCATTGTATCA+TGG 0.440958 tig0012395:+13788 Msa1351920:three_prime_UTR
TTGAGGTGGAGAGTAGTGTT+TGG 0.441638 tig0012395:-9191 None:intergenic
GTATACGACGGCGAAGATAT+CGG 0.442192 tig0012395:+9650 Msa1351920:CDS
TTGGTGATTTAGTCGCGAAT+TGG 0.443335 tig0012395:+13511 Msa1351920:three_prime_UTR
GTCAGAAGTCACCCCTGAAT+CGG 0.449046 tig0012395:-12539 None:intergenic
GAATGAACAAAATGGACATA+TGG 0.450541 tig0012395:+11774 Msa1351920:CDS
CCCTGAATCGGGGTTTGACT+CGG 0.450927 tig0012395:-12527 None:intergenic
TCAGCAACAAGAAATGCAAC+GGG 0.451131 tig0012395:-13412 None:intergenic
AAATACCAAATACTACAGTT+TGG 0.452518 tig0012395:+12832 Msa1351920:three_prime_UTR
TCCAGCATGAATTTCAGAAT+AGG 0.452577 tig0012395:-11158 None:intergenic
TTTCTTCTTGCGTATTGCAT+GGG 0.457197 tig0012395:-9229 None:intergenic
GGAGTTCTTCCTTATTAGAC+TGG 0.457507 tig0012395:+12984 Msa1351920:three_prime_UTR
TATGAATTACTAGGTGCAAA+AGG 0.459744 tig0012395:-11535 None:intergenic
TTTAGTCGCGAATTGGTCTC+TGG 0.459938 tig0012395:+13518 Msa1351920:three_prime_UTR
ACCGTTTGGTCTTAATGGCT+GGG 0.462546 tig0012395:-11497 None:intergenic
CTTTGGACTACTCTCTTAGC+TGG 0.463279 tig0012395:+11016 Msa1351920:CDS
TGTGTATCACCACTGGTTAG+TGG 0.463529 tig0012395:-11046 None:intergenic
TGGATAATTCATCAGCAGTC+TGG 0.469032 tig0012395:+12478 Msa1351920:CDS
TGCTGTCGTATGCAATGGGT+CGG 0.469423 tig0012395:-9254 None:intergenic
ATGGTGGTAAAACAAAATTT+AGG 0.469766 tig0012395:+12093 Msa1351920:CDS
CCCTCCATCAACTGCGAATG+AGG 0.471098 tig0012395:+10921 Msa1351920:CDS
GGAGCACTACTCTTAGGATT+CGG 0.471163 tig0012395:-11733 None:intergenic
CAATTGCTGTCGTATGCAAT+GGG 0.472372 tig0012395:-9258 None:intergenic
CGACATGCTGTTCTGGGCAG+TGG 0.473730 tig0012395:+10841 Msa1351920:CDS
ATAACTGATAGCATCCGTTA+TGG 0.474762 tig0012395:+12009 Msa1351920:CDS
ATTGGCGCGCTCAAAGTTTG+TGG 0.477749 tig0012395:-11374 None:intergenic
TAGCGATCAATTTGTTTGAT+CGG 0.477979 tig0012395:+13703 Msa1351920:three_prime_UTR
TTGCAGCAGCTAAGAGTGTA+TGG 0.479275 tig0012395:+10993 Msa1351920:CDS
ACATTTGGATTATAGTTGCC+AGG 0.480104 tig0012395:-11334 None:intergenic
GGTTGCAATGGAAAACCGTT+TGG 0.481798 tig0012395:-11511 None:intergenic
GGTGTCACCGTAGGCGGAGA+TGG 0.483267 tig0012395:-9781 None:intergenic
GTTGCATTTCTTGTTGCTGA+TGG 0.483586 tig0012395:+13415 Msa1351920:three_prime_UTR
TAAGATCAGATGGGCGGAGG+TGG 0.484744 tig0012395:+9603 Msa1351920:exon
TTTCTATTGCCTCTTAATGT+CGG 0.485326 tig0012395:+13550 Msa1351920:three_prime_UTR
TCAGTTATATTCTTCTCAGT+TGG 0.486950 tig0012395:-11994 None:intergenic
AACTTCCCTCTAATGGTAAG+TGG 0.488285 tig0012395:+11875 Msa1351920:CDS
TTAGTTTGAATCGATCTTTG+TGG 0.488974 tig0012395:+9553 Msa1351920:five_prime_UTR
CCGTAGGCGGAGATGGAAAC+GGG 0.489402 tig0012395:-9774 None:intergenic
TCTATCTTGGTGACCAACCT+TGG 0.490918 tig0012395:+13083 Msa1351920:three_prime_UTR
CCCGTTTCCATCTCCGCCTA+CGG 0.493859 tig0012395:+9774 Msa1351920:CDS
GAAAACTGTCATGTTCCTAA+AGG 0.494196 tig0012395:+9687 Msa1351920:CDS
TGGAAGTGTGTAAATCCCTT+AGG 0.494619 tig0012395:+12153 Msa1351920:CDS
CAAATGTTCAAAACGGAGGA+AGG 0.495613 tig0012395:+11185 Msa1351920:CDS
ACATTGGTGTTGCGATGCTT+GGG 0.495737 tig0012395:-12036 None:intergenic
CTGTTTAGGATTTCCACCTA+AGG 0.496032 tig0012395:-12169 None:intergenic
TATCAAATATATCACTAAAA+CGG 0.496693 tig0012395:-13018 None:intergenic
CCTACACACTCGACAGCAAT+GGG 0.496891 tig0012395:+11844 Msa1351920:CDS
TTGGTAAGAATGACAAACTC+TGG 0.500710 tig0012395:+12133 Msa1351920:CDS
CTCCAGAGCTTTCTTAACAT+TGG 0.502177 tig0012395:-12052 None:intergenic
AAATTGTTGCCAACAGTCCT+AGG 0.502255 tig0012395:-11598 None:intergenic
CCGAGTCAAACCCCGATTCA+GGG 0.503212 tig0012395:+12527 Msa1351920:CDS
CCCTATTCTGAAATTCATGC+TGG 0.505000 tig0012395:+11157 Msa1351920:CDS
TTTGGAGAATATGAATTACT+AGG 0.506209 tig0012395:-11544 None:intergenic
AACAACCCCTGCTGGTAGAT+CGG 0.506607 tig0012395:+12230 Msa1351920:CDS
CTCCGTTGCGGAACAGTGCG+GGG 0.510872 tig0012395:-11697 None:intergenic
TCGGTCCATTTGGTTGACTC+GGG 0.511015 tig0012395:-11249 None:intergenic
ACCGTAGGCGGAGATGGAAA+CGG 0.511972 tig0012395:-9775 None:intergenic
AATCCAAATGTTCCTCAAAG+TGG 0.513048 tig0012395:+11346 Msa1351920:CDS
AGATCCACTGTGATGTATAA+CGG 0.515531 tig0012395:-12882 None:intergenic
TATGGTAATGGAAACTTGAA+AGG 0.516440 tig0012395:+12580 Msa1351920:three_prime_UTR
AATGTTCAAAACGGAGGAAG+GGG 0.517066 tig0012395:+11187 Msa1351920:CDS
TAATTCATCAGCAGTCTGGC+TGG 0.517933 tig0012395:+12482 Msa1351920:CDS
TAATTACTGGTCCAACTGGC+TGG 0.519557 tig0012395:-12641 None:intergenic
CCAAATACTACAGTTTGGTA+TGG 0.522466 tig0012395:+12837 Msa1351920:three_prime_UTR
TGACTCGGGTTTCTCCAAGT+TGG 0.524058 tig0012395:-11235 None:intergenic
CACCAATGTTAAGAAAGCTC+TGG 0.524584 tig0012395:+12050 Msa1351920:CDS
TATTTCTGTAGGTATGAAGC+AGG 0.525565 tig0012395:+12370 Msa1351920:intron
CCTGAATCGGGGTTTGACTC+GGG 0.525798 tig0012395:-12526 None:intergenic
GTTGGCAACAATTTCAGTAC+AGG 0.526636 tig0012395:+11607 Msa1351920:CDS
TCCCAGCCATTAAGACCAAA+CGG 0.527762 tig0012395:+11496 Msa1351920:CDS
TTTGTGGTTGATCCACTTTG+AGG 0.528704 tig0012395:-11358 None:intergenic
CAACTACACCGGTGCCACCT+AGG 0.529046 tig0012395:+11581 Msa1351920:CDS
GGTTATCTTGAAGCCCAACT+GGG 0.529242 tig0012395:-11288 None:intergenic
GATATCAGGGTAGACCAACT+TGG 0.529804 tig0012395:+11221 Msa1351920:CDS
TTGGATTGAGAGACTTGAGG+TGG 0.530189 tig0012395:-9205 None:intergenic
ATTATTGCCGATCTACCAGC+AGG 0.530418 tig0012395:-12237 None:intergenic
ACTTCCCTCTAATGGTAAGT+GGG 0.534715 tig0012395:+11876 Msa1351920:CDS
GGAAATTCAAATGTTCAAAA+CGG 0.536448 tig0012395:+11178 Msa1351920:CDS
GATCTTTGTGGAATTAAGAT+CGG 0.538325 tig0012395:+9565 Msa1351920:five_prime_UTR
GAAAGCTCTGGAGAGTGCTA+TGG 0.538754 tig0012395:+12062 Msa1351920:CDS
CCAACAGTCCTAGGTGGCAC+CGG 0.539658 tig0012395:-11589 None:intergenic
ACAGTTTGGTATGGTTGCTG+AGG 0.542168 tig0012395:+12846 Msa1351920:three_prime_UTR
ACCTACACACTCGACAGCAA+TGG 0.545629 tig0012395:+11843 Msa1351920:CDS
AGATCGGAGATAAGATCAGA+TGG 0.545923 tig0012395:+9593 Msa1351920:exon
GCTGTCGTATGCAATGGGTC+GGG 0.547190 tig0012395:-9253 None:intergenic
ATAGAGTCAAAGCATAGTAA+AGG 0.547809 tig0012395:-9424 None:intergenic
TTCAAATCTCCACTCCGTTG+CGG 0.550016 tig0012395:-11709 None:intergenic
GTCTGAGCAGCATTTGAGAC+AGG 0.550440 tig0012395:-11118 None:intergenic
TGAATATATCACCAGCCAGT+TGG 0.552081 tig0012395:+12630 Msa1351920:three_prime_UTR
CAATGCCTTCAATTCGTCGT+CGG 0.554346 tig0012395:+12760 Msa1351920:three_prime_UTR
AGTTTCCATTACCATAATCA+GGG 0.555080 tig0012395:-12573 None:intergenic
CGGTGTAGTTGCAAAAGTAT+GGG 0.556383 tig0012395:-11569 None:intergenic
CTGCGCAATTGCATGTGGAT+CGG 0.560127 tig0012395:-9712 None:intergenic
TGTTTAGGATTTCCACCTAA+GGG 0.560176 tig0012395:-12168 None:intergenic
ATTCAACATCATAACTCTGT+AGG 0.560856 tig0012395:-13440 None:intergenic
CCGGTGCCACCTAGGACTGT+TGG 0.561100 tig0012395:+11589 Msa1351920:CDS
GGATTTGATTCTAGATATCA+GGG 0.561545 tig0012395:+11208 Msa1351920:CDS
CTATTGCCTCTTAATGTCGG+TGG 0.561562 tig0012395:+13553 Msa1351920:three_prime_UTR
CTCTTAGCTGCTGCAACTAG+TGG 0.562484 tig0012395:-10986 None:intergenic
TGGACTACTCTCTTAGCTGG+AGG 0.562680 tig0012395:+11019 Msa1351920:CDS
AGGCCTTGTACATATTCAGA+AGG 0.565970 tig0012395:-11919 None:intergenic
AAATGTTCAAAACGGAGGAA+GGG 0.566489 tig0012395:+11186 Msa1351920:CDS
GGCGAAGATATCGGTATGGT+GGG 0.567110 tig0012395:+9659 Msa1351920:CDS
GGTGCTTTAACGCTGTATGT+TGG 0.568779 tig0012395:+12114 Msa1351920:CDS
ATAAATAATTCGCAGGTGCA+GGG 0.569096 tig0012395:-10868 None:intergenic
AGAAACCCGAGTCAACCAAA+TGG 0.569109 tig0012395:+11244 Msa1351920:CDS
CGGCGAAGATATCGGTATGG+TGG 0.569397 tig0012395:+9658 Msa1351920:CDS
TGGTCACCAAGATAGATTGA+AGG 0.573794 tig0012395:-13076 None:intergenic
ATCAGCAACAAGAAATGCAA+CGG 0.574006 tig0012395:-13413 None:intergenic
GAAATCAATAAATAATTCGC+AGG 0.575414 tig0012395:-10875 None:intergenic
CTTCCCTCTAATGGTAAGTG+GGG 0.577253 tig0012395:+11877 Msa1351920:CDS
TCCTCATTCGCAGTTGATGG+AGG 0.578055 tig0012395:-10922 None:intergenic
GGTTTGACTCGGGAAGAGTA+AGG 0.583411 tig0012395:-12516 None:intergenic
GGTGCAAAAGGAGGTTGCAA+TGG 0.586116 tig0012395:-11523 None:intergenic
CGCACTGTTCCGCAACGGAG+TGG 0.587754 tig0012395:+11700 Msa1351920:CDS
CAGAAGCTTAAGACACAGGA+AGG 0.591686 tig0012395:-12922 None:intergenic
GATGCTTGGGATCTCCATAA+CGG 0.593120 tig0012395:-12023 None:intergenic
ATTAAGATCGGAGATAAGAT+CGG 0.593203 tig0012395:+9577 Msa1351920:five_prime_UTR
ACGAGTGGTGTCACCGTAGG+CGG 0.595030 tig0012395:-9787 None:intergenic
TGCTCAGACACAGCAACAGG+GGG 0.595588 tig0012395:+11132 Msa1351920:CDS
CAGCACGCGCTTTCTAGCAC+CGG 0.596449 tig0012395:+9825 Msa1351920:CDS
GAGTTGTTGTGTATCACCAC+TGG 0.599166 tig0012395:-11053 None:intergenic
AGATAAGATCAGATGGGCGG+AGG 0.599612 tig0012395:+9600 Msa1351920:exon
CCTCATTCGCAGTTGATGGA+GGG 0.600072 tig0012395:-10921 None:intergenic
ACTTGTATAGTTTCAGAAGA+CGG 0.600079 tig0012395:-11094 None:intergenic
AAACCTTCTGAATATGTACA+AGG 0.601145 tig0012395:+11916 Msa1351920:CDS
CCCAGAACAGCATGTCGACA+AGG 0.601862 tig0012395:-10835 None:intergenic
GCTTAGTTAACTATATATGG+TGG 0.605010 tig0012395:-9372 None:intergenic
TCACTTAATCATGTTCCCGC+CGG 0.605523 tig0012395:+9852 Msa1351920:CDS
ATGTTAAACAAACAGCTCCA+AGG 0.606915 tig0012395:-13100 None:intergenic
GCTATCTGGACACAATTACA+AGG 0.607116 tig0012395:+13307 Msa1351920:three_prime_UTR
GATCCCCACTTACCATTAGA+GGG 0.607911 tig0012395:-11880 None:intergenic
CACTCCGTTGCGGAACAGTG+CGG 0.607972 tig0012395:-11699 None:intergenic
AAGTGTGTAAATCCCTTAGG+TGG 0.612305 tig0012395:+12156 Msa1351920:CDS
TGCTATGGAGCAGCAGATGG+TGG 0.612792 tig0012395:+12077 Msa1351920:CDS
AAGTTTCAAATGTTGCAGGA+AGG 0.613758 tig0012395:+13206 Msa1351920:three_prime_UTR
TCACCATGTTCAATATCTGA+AGG 0.616291 tig0012395:-12441 None:intergenic
CTTGTTCGTATGAACTATTG+TGG 0.616869 tig0012395:+9750 Msa1351920:CDS
TGAGCAGAAGCTTAAGACAC+AGG 0.619652 tig0012395:-12926 None:intergenic
TCCGTTGCGGAACAGTGCGG+GGG 0.622717 tig0012395:-11696 None:intergenic
CCCATTGCTGTCGAGTGTGT+AGG 0.626853 tig0012395:-11844 None:intergenic
CGAGTCAAACCCCGATTCAG+GGG 0.629328 tig0012395:+12528 Msa1351920:CDS
AGTAAAGGTGAAGAGATAGA+GGG 0.630522 tig0012395:-9409 None:intergenic
CGACGGCGAAGATATCGGTA+TGG 0.634124 tig0012395:+9655 Msa1351920:CDS
AGCAATAATGGTAATCAACA+AGG 0.635068 tig0012395:+11412 Msa1351920:CDS
CTGCTCAGACACAGCAACAG+GGG 0.637667 tig0012395:+11131 Msa1351920:CDS
TATTGCCGATCTACCAGCAG+GGG 0.638854 tig0012395:-12235 None:intergenic
ATATTCTGCGCAATTGCATG+TGG 0.639515 tig0012395:-9717 None:intergenic
TCGGGAAGAGTAAGGATGAG+TGG 0.640711 tig0012395:-12508 None:intergenic
GAGTGCTATGGAGCAGCAGA+TGG 0.644619 tig0012395:+12074 Msa1351920:CDS
TAAACAAACAGCTCCAAGGT+TGG 0.647216 tig0012395:-13096 None:intergenic
AATTCAAATGTTCAAAACGG+AGG 0.648741 tig0012395:+11181 Msa1351920:CDS
GCTGCTCAGACACAGCAACA+GGG 0.650440 tig0012395:+11130 Msa1351920:CDS
AATGTAAACAATTATCGACC+TGG 0.651786 tig0012395:+11316 Msa1351920:CDS
TCCATCAACTGCGAATGAGG+AGG 0.652227 tig0012395:+10924 Msa1351920:CDS
GATCGGAGATAAGATCAGAT+GGG 0.656287 tig0012395:+9594 Msa1351920:exon
GTTATCTTGAAGCCCAACTG+GGG 0.657502 tig0012395:-11287 None:intergenic
ACCACTCAAGGCTATCCACA+TGG 0.657824 tig0012395:+11808 Msa1351920:CDS
AGCGCGTGCTGTACAGACGC+AGG 0.658760 tig0012395:-9813 None:intergenic
GTGCATAGCAGTACCACTCA+AGG 0.659605 tig0012395:+11796 Msa1351920:CDS
GTATCACCACTGGTTAGTGG+AGG 0.662670 tig0012395:-11043 None:intergenic
GGTTTGGATTGAGAGACTTG+AGG 0.663612 tig0012395:-9208 None:intergenic
CAGAAGTCACCCCTGAATCG+GGG 0.665735 tig0012395:-12537 None:intergenic
CGCGGAGGCGCAGTATACGA+CGG 0.668480 tig0012395:+9638 Msa1351920:CDS
TATACGAGTGGTGTCACCGT+AGG 0.671792 tig0012395:-9790 None:intergenic
CGGAGATAAGATCAGATGGG+CGG 0.673527 tig0012395:+9597 Msa1351920:exon
TTATCTTGAAGCCCAACTGG+GGG 0.674353 tig0012395:-11286 None:intergenic
TGTCCTTCAGATATTGAACA+TGG 0.677199 tig0012395:+12438 Msa1351920:CDS
TTATTGCCGATCTACCAGCA+GGG 0.679539 tig0012395:-12236 None:intergenic
GAAATCATCAAAATCAACAG+GGG 0.679631 tig0012395:+11455 Msa1351920:CDS
AGGTGGAGCGACAACTAACG+CGG 0.688181 tig0012395:+9620 Msa1351920:CDS
GGAGGACCTCCACTAACCAG+TGG 0.691674 tig0012395:+11037 Msa1351920:CDS
AGTGAAAACTGGTAATGACA+AGG 0.692144 tig0012395:-13740 None:intergenic
GGAAATCATCAAAATCAACA+GGG 0.697219 tig0012395:+11454 Msa1351920:CDS
GGTTGATATTCTGGACCATG+TGG 0.700176 tig0012395:-11823 None:intergenic
TACAGACGCAGGTATACGAG+TGG 0.706607 tig0012395:-9802 None:intergenic
GAATTACTAGGTGCAAAAGG+AGG 0.707826 tig0012395:-11532 None:intergenic
TGGAGCGACAACTAACGCGG+AGG 0.712925 tig0012395:+9623 Msa1351920:CDS
TTGTTGCCAACAGTCCTAGG+TGG 0.727786 tig0012395:-11595 None:intergenic
GGAAATCATCAAAATCAACA+GGG 0.731421 tig0012395:+11433 Msa1351920:CDS
GCTCAGACACAGCAACAGGG+GGG 0.746430 tig0012395:+11133 Msa1351920:CDS
ACCATGTGGATAGCCTTGAG+TGG 0.749894 tig0012395:-11809 None:intergenic
ATCCACTGTGATGTATAACG+GGG 0.757583 tig0012395:-12880 None:intergenic
TGCCCCGTTATACATCACAG+TGG 0.779311 tig0012395:+12878 Msa1351920:three_prime_UTR
CAGCAACAAGAAATGCAACG+GGG 0.785002 tig0012395:-13411 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTTATATAGATAAAATT+AGG + tig0012395:9520-9539 Msa1351920:five_prime_UTR 10.0%
!! GATAATTGTTTACATTATTA+CGG - tig0012395:11312-11331 None:intergenic 15.0%
!!! ATGAATATAGTCTATTTTAT+TGG - tig0012395:12312-12331 None:intergenic 15.0%
!!! ATGAATTATCCATTTTTTAT+GGG - tig0012395:12470-12489 None:intergenic 15.0%
!! TATCAAATATATCACTAAAA+CGG - tig0012395:13021-13040 None:intergenic 15.0%
!! AGCAAATGTAAATTTAAATA+CGG - tig0012395:13595-13614 None:intergenic 15.0%
!! ATTTAAATTTACATTTGCTT+TGG + tig0012395:13596-13615 Msa1351920:three_prime_UTR 15.0%
!! TTTGCTTAGTTAACTATATA+TGG - tig0012395:9378-9397 None:intergenic 20.0%
!!! TTGAATTTTTTCTCAGTATA+AGG + tig0012395:10105-10124 Msa1351920:intron 20.0%
!!! TGCGAATTATTTATTGATTT+CGG + tig0012395:10877-10896 Msa1351920:CDS 20.0%
!!! GATGAATTATCCATTTTTTA+TGG - tig0012395:12471-12490 None:intergenic 20.0%
!!! AGTATAACAAGTATCTTTTT+TGG + tig0012395:12731-12750 Msa1351920:three_prime_UTR 20.0%
!! TATGATGTTGAATAATTATC+CGG + tig0012395:13450-13469 Msa1351920:three_prime_UTR 20.0%
!!! ATTTTCATCTTTCTTTGTAT+TGG + tig0012395:13648-13667 Msa1351920:three_prime_UTR 20.0%
! AACATGATTAAGTGAAATTC+CGG - tig0012395:9847-9866 None:intergenic 25.0%
!! TTCATTTCTGTGATTGATTT+GGG + tig0012395:9995-10014 Msa1351920:intron 25.0%
!!! ATGGTTTTAAATTGTGATTG+CGG + tig0012395:10144-10163 Msa1351920:intron 25.0%
! TTTATGCAGAATTAAATTCC+CGG - tig0012395:10241-10260 None:intergenic 25.0%
!!! ATTTTATTTATCACGTGATG+CGG + tig0012395:10319-10338 Msa1351920:intron 25.0%
!! GGTATTAAAAATCTGATTTG+TGG + tig0012395:10365-10384 Msa1351920:intron 25.0%
! TTATCAAAATTACACCTCAA+AGG - tig0012395:10536-10555 None:intergenic 25.0%
!!! GAGGTGTAATTTTGATAATT+TGG + tig0012395:10538-10557 Msa1351920:intron 25.0%
!! TGTTGATTGAAAGATAGATT+TGG + tig0012395:10613-10632 Msa1351920:intron 25.0%
! TGTTGAACAGTTAATACATT+TGG + tig0012395:10676-10695 Msa1351920:intron 25.0%
!!! AATTTCACACTATTGATTTG+TGG - tig0012395:10735-10754 None:intergenic 25.0%
!!! GTGTGAAATTTTGATACATT+TGG + tig0012395:10745-10764 Msa1351920:intron 25.0%
!!! CTTTTTTCATGTTTGGTTAT+AGG + tig0012395:10785-10804 Msa1351920:intron 25.0%
! GAAATCAATAAATAATTCGC+AGG - tig0012395:10878-10897 None:intergenic 25.0%
!!! GCGAATTATTTATTGATTTC+GGG + tig0012395:10878-10897 Msa1351920:CDS 25.0%
! GGAAATTCAAATGTTCAAAA+CGG + tig0012395:11178-11197 Msa1351920:CDS 25.0%
! TTTGGAGAATATGAATTACT+AGG - tig0012395:11547-11566 None:intergenic 25.0%
! AATAATAAACTTCCCTCTAA+TGG + tig0012395:11868-11887 Msa1351920:CDS 25.0%
! ATGGTGGTAAAACAAAATTT+AGG + tig0012395:12093-12112 Msa1351920:CDS 25.0%
!!! TGAATCTATTCTATTTCTGT+AGG + tig0012395:12359-12378 Msa1351920:intron 25.0%
!!! TGTTTTAAAGATCTTGCTTT+GGG + tig0012395:12412-12431 Msa1351920:CDS 25.0%
!!! TTACTTTTATGAGTTTTCTC+TGG - tig0012395:12609-12628 None:intergenic 25.0%
! AGAATCATTCGAATAATTAC+TGG - tig0012395:12657-12676 None:intergenic 25.0%
!! TGTAGTATTTGGTATTTTTC+GGG - tig0012395:12829-12848 None:intergenic 25.0%
!! CTGTAGTATTTGGTATTTTT+CGG - tig0012395:12830-12849 None:intergenic 25.0%
! AAATACCAAATACTACAGTT+TGG + tig0012395:12832-12851 Msa1351920:three_prime_UTR 25.0%
! ATATTTCCTTCAATCTATCT+TGG + tig0012395:13070-13089 Msa1351920:three_prime_UTR 25.0%
! ACAAGGTATGTTTATTATGA+TGG + tig0012395:13324-13343 Msa1351920:three_prime_UTR 25.0%
!! GTTTTCAACATGATTCAAAA+TGG + tig0012395:13376-13395 Msa1351920:three_prime_UTR 25.0%
! CTAAATTCTTCATTGTATCA+TGG + tig0012395:13788-13807 Msa1351920:three_prime_UTR 25.0%
! GGTTTTTATGGCTATCATTT+TGG - tig0012395:9325-9344 None:intergenic 30.0%
!! TACACAAGATTCGGTTTTTA+TGG - tig0012395:9337-9356 None:intergenic 30.0%
GCTTAGTTAACTATATATGG+TGG - tig0012395:9375-9394 None:intergenic 30.0%
ATAGAGTCAAAGCATAGTAA+AGG - tig0012395:9427-9446 None:intergenic 30.0%
! TTAGTTTGAATCGATCTTTG+TGG + tig0012395:9553-9572 Msa1351920:five_prime_UTR 30.0%
GATCTTTGTGGAATTAAGAT+CGG + tig0012395:9565-9584 Msa1351920:five_prime_UTR 30.0%
ATTAAGATCGGAGATAAGAT+CGG + tig0012395:9577-9596 Msa1351920:five_prime_UTR 30.0%
AGCTATGATTTATGAACTGT+CGG + tig0012395:9920-9939 Msa1351920:intron 30.0%
GTTCATTTCTGTGATTGATT+TGG + tig0012395:9994-10013 Msa1351920:intron 30.0%
!!! ATTGATTTGGGTATTTTACG+CGG + tig0012395:10007-10026 Msa1351920:intron 30.0%
TTATGCAGAATTAAATTCCC+GGG - tig0012395:10240-10259 None:intergenic 30.0%
ACTTGTATAGTTTCAGAAGA+CGG - tig0012395:11097-11116 None:intergenic 30.0%
AATTCAAATGTTCAAAACGG+AGG + tig0012395:11181-11200 Msa1351920:CDS 30.0%
GGATTTGATTCTAGATATCA+GGG + tig0012395:11208-11227 Msa1351920:CDS 30.0%
AATGTAAACAATTATCGACC+TGG + tig0012395:11316-11335 Msa1351920:CDS 30.0%
TTACCATTATTGCTCCATAA+TGG - tig0012395:11406-11425 None:intergenic 30.0%
AGCAATAATGGTAATCAACA+AGG + tig0012395:11412-11431 Msa1351920:CDS 30.0%
AGGAAATCATCAAAATCAAC+AGG + tig0012395:11432-11451 Msa1351920:CDS 30.0%
GGAAATCATCAAAATCAACA+GGG + tig0012395:11433-11452 Msa1351920:CDS 30.0%
GGAAATCATCAAAATCAACA+GGG + tig0012395:11433-11452 Msa1351920:CDS 30.0%
GAAATCATCAAAATCAACAG+GGG + tig0012395:11434-11453 Msa1351920:CDS 30.0%
TATGAATTACTAGGTGCAAA+AGG - tig0012395:11538-11557 None:intergenic 30.0%
ATATCTGGTTATCCCAATAA+TGG + tig0012395:11667-11686 Msa1351920:CDS 30.0%
AGATCAACGAATGAACAAAA+TGG + tig0012395:11766-11785 Msa1351920:CDS 30.0%
GAATGAACAAAATGGACATA+TGG + tig0012395:11774-11793 Msa1351920:CDS 30.0%
TGTACATATTCAGAAGGTTT+AGG - tig0012395:11916-11935 None:intergenic 30.0%
AAACCTTCTGAATATGTACA+AGG + tig0012395:11916-11935 Msa1351920:CDS 30.0%
CAAGTAAAACAACACCTATA+AGG - tig0012395:11942-11961 None:intergenic 30.0%
TCAGTTATATTCTTCTCAGT+TGG - tig0012395:11997-12016 None:intergenic 30.0%
AATTTCGTCCCAAATTTCTT+TGG - tig0012395:12199-12218 None:intergenic 30.0%
AGAATAGATTCATCAGAATG+CGG - tig0012395:12351-12370 None:intergenic 30.0%
!!! GTGTTTTAAAGATCTTGCTT+TGG + tig0012395:12411-12430 Msa1351920:CDS 30.0%
TGGTGATAACCCATAAAAAA+TGG + tig0012395:12458-12477 Msa1351920:CDS 30.0%
AGTTTCCATTACCATAATCA+GGG - tig0012395:12576-12595 None:intergenic 30.0%
AAGTTTCCATTACCATAATC+AGG - tig0012395:12577-12596 None:intergenic 30.0%
!! TATGGTAATGGAAACTTGAA+AGG + tig0012395:12580-12599 Msa1351920:three_prime_UTR 30.0%
TCTCGTATGAATCAAACTAT+AGG + tig0012395:12683-12702 Msa1351920:three_prime_UTR 30.0%
CGAGCAAAATGTATATTTGT+AGG - tig0012395:12963-12982 None:intergenic 30.0%
! ACAAATATACATTTTGCTCG+AGG + tig0012395:12963-12982 Msa1351920:three_prime_UTR 30.0%
TTTCAGGGTGTATTGTAAAA+TGG + tig0012395:13147-13166 Msa1351920:three_prime_UTR 30.0%
CACTTAAAATTGCACAAGAT+TGG + tig0012395:13248-13267 Msa1351920:three_prime_UTR 30.0%
!! CAAACTCTTAATTTGCTATC+TGG + tig0012395:13293-13312 Msa1351920:three_prime_UTR 30.0%
ATTCAACATCATAACTCTGT+AGG - tig0012395:13443-13462 None:intergenic 30.0%
TTTCTATTGCCTCTTAATGT+CGG + tig0012395:13550-13569 Msa1351920:three_prime_UTR 30.0%
! TTTTTAGATGTACTCAGAAC+TGG + tig0012395:13678-13697 Msa1351920:three_prime_UTR 30.0%
! TAGCGATCAATTTGTTTGAT+CGG + tig0012395:13703-13722 Msa1351920:three_prime_UTR 30.0%
CAACAAATACAAGTGAAAAC+TGG - tig0012395:13754-13773 None:intergenic 30.0%
TTTCTTCTTGCGTATTGCAT+GGG - tig0012395:9232-9251 None:intergenic 35.0%
! TTTTCTTCTTGCGTATTGCA+TGG - tig0012395:9233-9252 None:intergenic 35.0%
ATACGACAGCAATTGGAAAA+AGG + tig0012395:9266-9285 Msa1351920:five_prime_UTR 35.0%
TACGACAGCAATTGGAAAAA+GGG + tig0012395:9267-9286 Msa1351920:five_prime_UTR 35.0%
TGAAGAGACTACACAAGATT+CGG - tig0012395:9346-9365 None:intergenic 35.0%
!!! AGAGATAGAGGGTTTTGTTT+TGG - tig0012395:9401-9420 None:intergenic 35.0%
AGTAAAGGTGAAGAGATAGA+GGG - tig0012395:9412-9431 None:intergenic 35.0%
TAGTAAAGGTGAAGAGATAG+AGG - tig0012395:9413-9432 None:intergenic 35.0%
GAAAACTGTCATGTTCCTAA+AGG + tig0012395:9687-9706 Msa1351920:CDS 35.0%
CTTGTTCGTATGAACTATTG+TGG + tig0012395:9750-9769 Msa1351920:CDS 35.0%
AATCGAAGTAAGTTCGTTAC+CGG - tig0012395:9874-9893 None:intergenic 35.0%
!! AGGTGATTTGATTTGAAGCA+TGG + tig0012395:10125-10144 Msa1351920:intron 35.0%
TATTGTGATAGCTGATACTG+TGG + tig0012395:10187-10206 Msa1351920:intron 35.0%
ATTATAGCCCTGACTTATTG+CGG + tig0012395:10263-10282 Msa1351920:intron 35.0%
TGTGTATTGCTGTAATTTCG+TGG + tig0012395:10295-10314 Msa1351920:intron 35.0%
GTGTATTGCTGTAATTTCGT+GGG + tig0012395:10296-10315 Msa1351920:intron 35.0%
TGGTTCACTTGAAACATTCA+CGG + tig0012395:10633-10652 Msa1351920:intron 35.0%
!! AAACATTCACGGTTGATTTG+TGG + tig0012395:10644-10663 Msa1351920:intron 35.0%
!!! GCTGAAGCTTTTTTCATGTT+TGG + tig0012395:10778-10797 Msa1351920:intron 35.0%
ATAAATAATTCGCAGGTGCA+GGG - tig0012395:10871-10890 None:intergenic 35.0%
AATAAATAATTCGCAGGTGC+AGG - tig0012395:10872-10891 None:intergenic 35.0%
CCAGCATGAATTTCAGAATA+GGG - tig0012395:11160-11179 None:intergenic 35.0%
TCCAGCATGAATTTCAGAAT+AGG - tig0012395:11161-11180 None:intergenic 35.0%
AAATGTTCAAAACGGAGGAA+GGG + tig0012395:11186-11205 Msa1351920:CDS 35.0%
GGGATTTGATTCTAGATATC+AGG + tig0012395:11207-11226 Msa1351920:CDS 35.0%
ACATTTGGATTATAGTTGCC+AGG - tig0012395:11337-11356 None:intergenic 35.0%
AATCCAAATGTTCCTCAAAG+TGG + tig0012395:11346-11365 Msa1351920:CDS 35.0%
GATCCATTATGGAGCAATAA+TGG + tig0012395:11400-11419 Msa1351920:CDS 35.0%
GGGAAATCATCAAAATCAAC+AGG + tig0012395:11453-11472 Msa1351920:CDS 35.0%
! GTTGCAAAAGTATGGGAATT+TGG - tig0012395:11565-11584 None:intergenic 35.0%
ATGTTCAGATTGCCAATATC+TGG - tig0012395:11649-11668 None:intergenic 35.0%
ATTGGCAATCTGAACATATC+TGG + tig0012395:11652-11671 Msa1351920:CDS 35.0%
TGTTCATTCGTTGATCTTAC+CGG - tig0012395:11763-11782 None:intergenic 35.0%
! GAATATGTACAAGGCCTTAT+AGG + tig0012395:11925-11944 Msa1351920:CDS 35.0%
!!! GGCATTTTTTAGTGAGTTCA+GGG - tig0012395:11965-11984 None:intergenic 35.0%
!!! TGGCATTTTTTAGTGAGTTC+AGG - tig0012395:11966-11985 None:intergenic 35.0%
ATAACTGATAGCATCCGTTA+TGG + tig0012395:12009-12028 Msa1351920:CDS 35.0%
TTGGTAAGAATGACAAACTC+TGG + tig0012395:12133-12152 Msa1351920:CDS 35.0%
! TGTTTAGGATTTCCACCTAA+GGG - tig0012395:12171-12190 None:intergenic 35.0%
!! ATTTCTTTGGAGTGCTGTTT+AGG - tig0012395:12186-12205 None:intergenic 35.0%
AACAGCACTCCAAAGAAATT+TGG + tig0012395:12187-12206 Msa1351920:CDS 35.0%
ACAGCACTCCAAAGAAATTT+GGG + tig0012395:12188-12207 Msa1351920:CDS 35.0%
AATAGATTCATCAGAATGCG+GGG - tig0012395:12349-12368 None:intergenic 35.0%
GAATAGATTCATCAGAATGC+GGG - tig0012395:12350-12369 None:intergenic 35.0%
! TATTTCTGTAGGTATGAAGC+AGG + tig0012395:12370-12389 Msa1351920:intron 35.0%
TGTCCTTCAGATATTGAACA+TGG + tig0012395:12438-12457 Msa1351920:CDS 35.0%
TCACCATGTTCAATATCTGA+AGG - tig0012395:12444-12463 None:intergenic 35.0%
CCATACCAAACTGTAGTATT+TGG - tig0012395:12840-12859 None:intergenic 35.0%
CCAAATACTACAGTTTGGTA+TGG + tig0012395:12837-12856 Msa1351920:three_prime_UTR 35.0%
AGATCCACTGTGATGTATAA+CGG - tig0012395:12885-12904 None:intergenic 35.0%
AGGAAATATCTCGACACATT+TGG - tig0012395:13059-13078 None:intergenic 35.0%
ATGTTAAACAAACAGCTCCA+AGG - tig0012395:13103-13122 None:intergenic 35.0%
! TCTACCAAGTCAGATTTTTC+AGG + tig0012395:13131-13150 Msa1351920:three_prime_UTR 35.0%
! CTACCAAGTCAGATTTTTCA+GGG + tig0012395:13132-13151 Msa1351920:three_prime_UTR 35.0%
AGCGTCAAATGAACAAATTC+TGG - tig0012395:13177-13196 None:intergenic 35.0%
TTCGAAGTTTCAAATGTTGC+AGG + tig0012395:13202-13221 Msa1351920:three_prime_UTR 35.0%
AAGTTTCAAATGTTGCAGGA+AGG + tig0012395:13206-13225 Msa1351920:three_prime_UTR 35.0%
ATCAGCAACAAGAAATGCAA+CGG - tig0012395:13416-13435 None:intergenic 35.0%
! TTATCCGGAAATACAGCTTT+TGG + tig0012395:13465-13484 Msa1351920:three_prime_UTR 35.0%
ACATCCAAAAGCTGTATTTC+CGG - tig0012395:13472-13491 None:intergenic 35.0%
! AAATACAGCTTTTGGATGTC+TGG + tig0012395:13473-13492 Msa1351920:three_prime_UTR 35.0%
!! CTGGCTCTATATACTGAATT+TGG + tig0012395:13492-13511 Msa1351920:three_prime_UTR 35.0%
! AGTGAAAACTGGTAATGACA+AGG - tig0012395:13743-13762 None:intergenic 35.0%
CAATTGCTGTCGTATGCAAT+GGG - tig0012395:9261-9280 None:intergenic 40.0%
AGATCGGAGATAAGATCAGA+TGG + tig0012395:9593-9612 Msa1351920:exon 40.0%
GATCGGAGATAAGATCAGAT+GGG + tig0012395:9594-9613 Msa1351920:exon 40.0%
ATATTCTGCGCAATTGCATG+TGG - tig0012395:9720-9739 None:intergenic 40.0%
CGCAGTTTGTACTGTCTATA+TGG + tig0012395:10344-10363 Msa1351920:intron 40.0%
!! CCCTATTCTGAAATTCATGC+TGG + tig0012395:11157-11176 Msa1351920:CDS 40.0%
CAAATGTTCAAAACGGAGGA+AGG + tig0012395:11185-11204 Msa1351920:CDS 40.0%
AATGTTCAAAACGGAGGAAG+GGG + tig0012395:11187-11206 Msa1351920:CDS 40.0%
! GATCCACTTTGAGGAACATT+TGG - tig0012395:11352-11371 None:intergenic 40.0%
TTTGTGGTTGATCCACTTTG+AGG - tig0012395:11361-11380 None:intergenic 40.0%
!! GCTCCATAATGGATCAGAAT+TGG - tig0012395:11395-11414 None:intergenic 40.0%
!! GGAAAACCGTTTGGTCTTAA+TGG - tig0012395:11505-11524 None:intergenic 40.0%
GAATTACTAGGTGCAAAAGG+AGG - tig0012395:11535-11554 None:intergenic 40.0%
! CGGTGTAGTTGCAAAAGTAT+GGG - tig0012395:11572-11591 None:intergenic 40.0%
! CCATACTTTTGCAACTACAC+CGG + tig0012395:11570-11589 Msa1351920:CDS 40.0%
AAATTGTTGCCAACAGTCCT+AGG - tig0012395:11601-11620 None:intergenic 40.0%
GTTGGCAACAATTTCAGTAC+AGG + tig0012395:11607-11626 Msa1351920:CDS 40.0%
!! GAGTGTGTAGGTTGATATTC+TGG - tig0012395:11835-11854 None:intergenic 40.0%
AACTTCCCTCTAATGGTAAG+TGG + tig0012395:11875-11894 Msa1351920:CDS 40.0%
ACTTCCCTCTAATGGTAAGT+GGG + tig0012395:11876-11895 Msa1351920:CDS 40.0%
! AGGCCTTGTACATATTCAGA+AGG - tig0012395:11922-11941 None:intergenic 40.0%
CACCAATGTTAAGAAAGCTC+TGG + tig0012395:12050-12069 Msa1351920:CDS 40.0%
CTCCAGAGCTTTCTTAACAT+TGG - tig0012395:12055-12074 None:intergenic 40.0%
! TGGAAGTGTGTAAATCCCTT+AGG + tig0012395:12153-12172 Msa1351920:CDS 40.0%
AAGTGTGTAAATCCCTTAGG+TGG + tig0012395:12156-12175 Msa1351920:CDS 40.0%
! CTGTTTAGGATTTCCACCTA+AGG - tig0012395:12172-12191 None:intergenic 40.0%
! AATTTTCTAACAACCCCTGC+TGG + tig0012395:12222-12241 Msa1351920:CDS 40.0%
TGGATAATTCATCAGCAGTC+TGG + tig0012395:12478-12497 Msa1351920:CDS 40.0%
TGAATATATCACCAGCCAGT+TGG + tig0012395:12630-12649 Msa1351920:three_prime_UTR 40.0%
CGAATAATTACTGGTCCAAC+TGG - tig0012395:12648-12667 None:intergenic 40.0%
AATTCGTCGTCGGAGATAAA+TGG + tig0012395:12770-12789 Msa1351920:three_prime_UTR 40.0%
ATCCACTGTGATGTATAACG+GGG - tig0012395:12883-12902 None:intergenic 40.0%
GATCCACTGTGATGTATAAC+GGG - tig0012395:12884-12903 None:intergenic 40.0%
ACATCACAGTGGATCTATCT+TGG + tig0012395:12889-12908 Msa1351920:three_prime_UTR 40.0%
GGAGTTCTTCCTTATTAGAC+TGG + tig0012395:12984-13003 Msa1351920:three_prime_UTR 40.0%
CCAAGTAGTCCAGTCTAATA+AGG - tig0012395:12996-13015 None:intergenic 40.0%
CCTTATTAGACTGGACTACT+TGG + tig0012395:12993-13012 Msa1351920:three_prime_UTR 40.0%
TGGTCACCAAGATAGATTGA+AGG - tig0012395:13079-13098 None:intergenic 40.0%
TAAACAAACAGCTCCAAGGT+TGG - tig0012395:13099-13118 None:intergenic 40.0%
ACACCCTGAAAAATCTGACT+TGG - tig0012395:13138-13157 None:intergenic 40.0%
GCTATCTGGACACAATTACA+AGG + tig0012395:13307-13326 Msa1351920:three_prime_UTR 40.0%
TCAGCAACAAGAAATGCAAC+GGG - tig0012395:13415-13434 None:intergenic 40.0%
GTTGCATTTCTTGTTGCTGA+TGG + tig0012395:13415-13434 Msa1351920:three_prime_UTR 40.0%
! TTGGTGATTTAGTCGCGAAT+TGG + tig0012395:13511-13530 Msa1351920:three_prime_UTR 40.0%
TTGAGGTGGAGAGTAGTGTT+TGG - tig0012395:9194-9213 None:intergenic 45.0%
TTGGATTGAGAGACTTGAGG+TGG - tig0012395:9208-9227 None:intergenic 45.0%
GGTTTGGATTGAGAGACTTG+AGG - tig0012395:9211-9230 None:intergenic 45.0%
TCTTGCGTATTGCATGGGTT+TGG - tig0012395:9227-9246 None:intergenic 45.0%
CCAATTGCTGTCGTATGCAA+TGG - tig0012395:9262-9281 None:intergenic 45.0%
CCATTGCATACGACAGCAAT+TGG + tig0012395:9259-9278 Msa1351920:five_prime_UTR 45.0%
GTATACGACGGCGAAGATAT+CGG + tig0012395:9650-9669 Msa1351920:CDS 45.0%
TCACTTAATCATGTTCCCGC+CGG + tig0012395:9852-9871 Msa1351920:CDS 45.0%
TTTGACGAGAATCAGCAACG+TGG + tig0012395:10050-10069 Msa1351920:intron 45.0%
!! GATTGCGGTAGAAGTTGATG+TGG + tig0012395:10159-10178 Msa1351920:intron 45.0%
GCAAACACCGCAATAAGTCA+GGG - tig0012395:10273-10292 None:intergenic 45.0%
CTTGTTTGCTTCCTTTCTCG+AGG + tig0012395:10408-10427 Msa1351920:intron 45.0%
CTTCCTTTCTTGAGCCTTTG+AGG + tig0012395:10519-10538 Msa1351920:intron 45.0%
ACACCTCAAAGGCTCAAGAA+AGG - tig0012395:10525-10544 None:intergenic 45.0%
!! AGTGGTGCAGATGCTTTTTG+AGG - tig0012395:10971-10990 None:intergenic 45.0%
! TTGCAGCAGCTAAGAGTGTA+TGG + tig0012395:10993-11012 Msa1351920:CDS 45.0%
! CAGCTAAGAGTGTATGGCTT+TGG + tig0012395:10999-11018 Msa1351920:CDS 45.0%
CTTTGGACTACTCTCTTAGC+TGG + tig0012395:11016-11035 Msa1351920:CDS 45.0%
! TGTGTATCACCACTGGTTAG+TGG - tig0012395:11049-11068 None:intergenic 45.0%
GAGTTGTTGTGTATCACCAC+TGG - tig0012395:11056-11075 None:intergenic 45.0%
GATATCAGGGTAGACCAACT+TGG + tig0012395:11221-11240 Msa1351920:CDS 45.0%
AGAAACCCGAGTCAACCAAA+TGG + tig0012395:11244-11263 Msa1351920:CDS 45.0%
TTCGGTCCATTTGGTTGACT+CGG - tig0012395:11253-11272 None:intergenic 45.0%
TTCATGGCTTTCGGTCCATT+TGG - tig0012395:11262-11281 None:intergenic 45.0%
TTATCTTGAAGCCCAACTGG+GGG - tig0012395:11289-11308 None:intergenic 45.0%
GTTATCTTGAAGCCCAACTG+GGG - tig0012395:11290-11309 None:intergenic 45.0%
GGTTATCTTGAAGCCCAACT+GGG - tig0012395:11291-11310 None:intergenic 45.0%
GCGCCAATTCTGATCCATTA+TGG + tig0012395:11389-11408 Msa1351920:CDS 45.0%
GGTCTTAATGGCTGGGAATA+TGG - tig0012395:11493-11512 None:intergenic 45.0%
TCCCAGCCATTAAGACCAAA+CGG + tig0012395:11496-11515 Msa1351920:CDS 45.0%
!! ACCGTTTGGTCTTAATGGCT+GGG - tig0012395:11500-11519 None:intergenic 45.0%
!! AACCGTTTGGTCTTAATGGC+TGG - tig0012395:11501-11520 None:intergenic 45.0%
GGTTGCAATGGAAAACCGTT+TGG - tig0012395:11514-11533 None:intergenic 45.0%
CCGGTGTAGTTGCAAAAGTA+TGG - tig0012395:11573-11592 None:intergenic 45.0%
CCAATATCTGGCACAGTTCT+AGG - tig0012395:11637-11656 None:intergenic 45.0%
CCTAGAACTGTGCCAGATAT+TGG + tig0012395:11634-11653 Msa1351920:CDS 45.0%
CGGGGGTTATGACCATTATT+GGG - tig0012395:11682-11701 None:intergenic 45.0%
TTCAAATCTCCACTCCGTTG+CGG - tig0012395:11712-11731 None:intergenic 45.0%
! GGAGCACTACTCTTAGGATT+CGG - tig0012395:11736-11755 None:intergenic 45.0%
TAAGAGTAGTGCTCCACTTC+CGG + tig0012395:11741-11760 Msa1351920:CDS 45.0%
TTCGTTGATCTTACCGGAAG+TGG - tig0012395:11757-11776 None:intergenic 45.0%
! GGTTGATATTCTGGACCATG+TGG - tig0012395:11826-11845 None:intergenic 45.0%
CTTCCCTCTAATGGTAAGTG+GGG + tig0012395:11877-11896 Msa1351920:CDS 45.0%
GATCCCCACTTACCATTAGA+GGG - tig0012395:11883-11902 None:intergenic 45.0%
AGATCCCCACTTACCATTAG+AGG - tig0012395:11884-11903 None:intergenic 45.0%
AATGGTAAGTGGGGATCTTC+AGG + tig0012395:11886-11905 Msa1351920:CDS 45.0%
CTTCTCAGTTGGCATCATCT+TGG - tig0012395:11986-12005 None:intergenic 45.0%
GATGCTTGGGATCTCCATAA+CGG - tig0012395:12026-12045 None:intergenic 45.0%
!! ACATTGGTGTTGCGATGCTT+GGG - tig0012395:12039-12058 None:intergenic 45.0%
!! AACATTGGTGTTGCGATGCT+TGG - tig0012395:12040-12059 None:intergenic 45.0%
GGTGCTTTAACGCTGTATGT+TGG + tig0012395:12114-12133 Msa1351920:CDS 45.0%
TTATTGCCGATCTACCAGCA+GGG - tig0012395:12239-12258 None:intergenic 45.0%
ATTATTGCCGATCTACCAGC+AGG - tig0012395:12240-12259 None:intergenic 45.0%
TGCTGGTAGATCGGCAATAA+TGG + tig0012395:12239-12258 Msa1351920:CDS 45.0%
TAATTCATCAGCAGTCTGGC+TGG + tig0012395:12482-12501 Msa1351920:CDS 45.0%
CAGCACCCTGATTATGGTAA+TGG + tig0012395:12568-12587 Msa1351920:three_prime_UTR 45.0%
TAATTACTGGTCCAACTGGC+TGG - tig0012395:12644-12663 None:intergenic 45.0%
CAATGCCTTCAATTCGTCGT+CGG + tig0012395:12760-12779 Msa1351920:three_prime_UTR 45.0%
TATCTCCGACGACGAATTGA+AGG - tig0012395:12768-12787 None:intergenic 45.0%
ACAGTTTGGTATGGTTGCTG+AGG + tig0012395:12846-12865 Msa1351920:three_prime_UTR 45.0%
CAGAAGCTTAAGACACAGGA+AGG - tig0012395:12925-12944 None:intergenic 45.0%
TGAGCAGAAGCTTAAGACAC+AGG - tig0012395:12929-12948 None:intergenic 45.0%
! TCTATCTTGGTGACCAACCT+TGG + tig0012395:13083-13102 Msa1351920:three_prime_UTR 45.0%
CAGCAACAAGAAATGCAACG+GGG - tig0012395:13414-13433 None:intergenic 45.0%
! TTTAGTCGCGAATTGGTCTC+TGG + tig0012395:13518-13537 Msa1351920:three_prime_UTR 45.0%
CTATTGCCTCTTAATGTCGG+TGG + tig0012395:13553-13572 Msa1351920:three_prime_UTR 45.0%
TGCTGTCGTATGCAATGGGT+CGG - tig0012395:9257-9276 None:intergenic 50.0%
CGGAGATAAGATCAGATGGG+CGG + tig0012395:9597-9616 Msa1351920:exon 50.0%
AGATAAGATCAGATGGGCGG+AGG + tig0012395:9600-9619 Msa1351920:exon 50.0%
GGCGAAGATATCGGTATGGT+GGG + tig0012395:9659-9678 Msa1351920:CDS 50.0%
CTGCGCAATTGCATGTGGAT+CGG - tig0012395:9715-9734 None:intergenic 50.0%
!! TATACGAGTGGTGTCACCGT+AGG - tig0012395:9793-9812 None:intergenic 50.0%
TACAGACGCAGGTATACGAG+TGG - tig0012395:9805-9824 None:intergenic 50.0%
GAAGTAAGTTCGTTACCGGC+GGG - tig0012395:9870-9889 None:intergenic 50.0%
CGAAGTAAGTTCGTTACCGG+CGG - tig0012395:9871-9890 None:intergenic 50.0%
! TGTGTGTTGCTGTGATTGCC+CGG + tig0012395:10219-10238 Msa1351920:intron 50.0%
CGCAAACACCGCAATAAGTC+AGG - tig0012395:10274-10293 None:intergenic 50.0%
CTTCCTTTCTCGAGGCTTTG+AGG + tig0012395:10416-10435 Msa1351920:intron 50.0%
ACACCTCAAAGCCTCGAGAA+AGG - tig0012395:10422-10441 None:intergenic 50.0%
TCCTTGTCGACATGCTGTTC+TGG + tig0012395:10834-10853 Msa1351920:CDS 50.0%
CCTTGTCGACATGCTGTTCT+GGG + tig0012395:10835-10854 Msa1351920:CDS 50.0%
!! CCTCATTCGCAGTTGATGGA+GGG - tig0012395:10924-10943 None:intergenic 50.0%
!! TCCTCATTCGCAGTTGATGG+AGG - tig0012395:10925-10944 None:intergenic 50.0%
TCCATCAACTGCGAATGAGG+AGG + tig0012395:10924-10943 Msa1351920:CDS 50.0%
ACCTCCTCATTCGCAGTTGA+TGG - tig0012395:10928-10947 None:intergenic 50.0%
CTCTTAGCTGCTGCAACTAG+TGG - tig0012395:10989-11008 None:intergenic 50.0%
TGGACTACTCTCTTAGCTGG+AGG + tig0012395:11019-11038 Msa1351920:CDS 50.0%
! GTATCACCACTGGTTAGTGG+AGG - tig0012395:11046-11065 None:intergenic 50.0%
! GTCTGAGCAGCATTTGAGAC+AGG - tig0012395:11121-11140 None:intergenic 50.0%
! TGACTCGGGTTTCTCCAAGT+TGG - tig0012395:11238-11257 None:intergenic 50.0%
! TCGGTCCATTTGGTTGACTC+GGG - tig0012395:11252-11271 None:intergenic 50.0%
CGGTTATCTTGAAGCCCAAC+TGG - tig0012395:11292-11311 None:intergenic 50.0%
ATTGGCGCGCTCAAAGTTTG+TGG - tig0012395:11377-11396 None:intergenic 50.0%
GGTGCAAAAGGAGGTTGCAA+TGG - tig0012395:11526-11545 None:intergenic 50.0%
TTGTTGCCAACAGTCCTAGG+TGG - tig0012395:11598-11617 None:intergenic 50.0%
GCGGGGGTTATGACCATTAT+TGG - tig0012395:11683-11702 None:intergenic 50.0%
! GGAAGTGGAGCACTACTCTT+AGG - tig0012395:11742-11761 None:intergenic 50.0%
GTGCATAGCAGTACCACTCA+AGG + tig0012395:11796-11815 Msa1351920:CDS 50.0%
ACCACTCAAGGCTATCCACA+TGG + tig0012395:11808-11827 Msa1351920:CDS 50.0%
! ACCATGTGGATAGCCTTGAG+TGG - tig0012395:11812-11831 None:intergenic 50.0%
ACCTACACACTCGACAGCAA+TGG + tig0012395:11843-11862 Msa1351920:CDS 50.0%
CCTACACACTCGACAGCAAT+GGG + tig0012395:11844-11863 Msa1351920:CDS 50.0%
!! GAAAGCTCTGGAGAGTGCTA+TGG + tig0012395:12062-12081 Msa1351920:CDS 50.0%
AACAACCCCTGCTGGTAGAT+CGG + tig0012395:12230-12249 Msa1351920:CDS 50.0%
TATTGCCGATCTACCAGCAG+GGG - tig0012395:12238-12257 None:intergenic 50.0%
TCGGGAAGAGTAAGGATGAG+TGG - tig0012395:12511-12530 None:intergenic 50.0%
!! GGTTTGACTCGGGAAGAGTA+AGG - tig0012395:12519-12538 None:intergenic 50.0%
TCAGAAGTCACCCCTGAATC+GGG - tig0012395:12541-12560 None:intergenic 50.0%
GTCAGAAGTCACCCCTGAAT+CGG - tig0012395:12542-12561 None:intergenic 50.0%
GCATAGCAGCACCCTGATTA+TGG + tig0012395:12562-12581 Msa1351920:exon 50.0%
TGCCCCGTTATACATCACAG+TGG + tig0012395:12878-12897 Msa1351920:three_prime_UTR 50.0%
CAGCTACCACCGACATTAAG+AGG - tig0012395:13562-13581 None:intergenic 50.0%
GCTGTCGTATGCAATGGGTC+GGG - tig0012395:9256-9275 None:intergenic 55.0%
TAAGATCAGATGGGCGGAGG+TGG + tig0012395:9603-9622 Msa1351920:exon 55.0%
AGGTGGAGCGACAACTAACG+CGG + tig0012395:9620-9639 Msa1351920:CDS 55.0%
CGACGGCGAAGATATCGGTA+TGG + tig0012395:9655-9674 Msa1351920:CDS 55.0%
CGGCGAAGATATCGGTATGG+TGG + tig0012395:9658-9677 Msa1351920:CDS 55.0%
GCATGTGGATCGGAGCCTTT+AGG - tig0012395:9705-9724 None:intergenic 55.0%
ACCGTAGGCGGAGATGGAAA+CGG - tig0012395:9778-9797 None:intergenic 55.0%
! GTGTGTTGCTGTGATTGCCC+GGG + tig0012395:10220-10239 Msa1351920:intron 55.0%
CCCAGAACAGCATGTCGACA+AGG - tig0012395:10838-10857 None:intergenic 55.0%
CCCTCCATCAACTGCGAATG+AGG + tig0012395:10921-10940 Msa1351920:CDS 55.0%
TGCTGCTCAGACACAGCAAC+AGG + tig0012395:11129-11148 Msa1351920:CDS 55.0%
GCTGCTCAGACACAGCAACA+GGG + tig0012395:11130-11149 Msa1351920:CDS 55.0%
CTGCTCAGACACAGCAACAG+GGG + tig0012395:11131-11150 Msa1351920:CDS 55.0%
TGCTCAGACACAGCAACAGG+GGG + tig0012395:11132-11151 Msa1351920:CDS 55.0%
! GGGGGTGGATTCATGGCTTT+CGG - tig0012395:11271-11290 None:intergenic 55.0%
CCATGAATCCACCCCCAGTT+GGG + tig0012395:11275-11294 Msa1351920:CDS 55.0%
CCCATTGCTGTCGAGTGTGT+AGG - tig0012395:11847-11866 None:intergenic 55.0%
GAGTGCTATGGAGCAGCAGA+TGG + tig0012395:12074-12093 Msa1351920:CDS 55.0%
TGCTATGGAGCAGCAGATGG+TGG + tig0012395:12077-12096 Msa1351920:CDS 55.0%
CCTGAATCGGGGTTTGACTC+GGG - tig0012395:12529-12548 None:intergenic 55.0%
CCCTGAATCGGGGTTTGACT+CGG - tig0012395:12530-12549 None:intergenic 55.0%
CCGAGTCAAACCCCGATTCA+GGG + tig0012395:12527-12546 Msa1351920:CDS 55.0%
CGAGTCAAACCCCGATTCAG+GGG + tig0012395:12528-12547 Msa1351920:CDS 55.0%
CAGAAGTCACCCCTGAATCG+GGG - tig0012395:12540-12559 None:intergenic 55.0%
TGGAGCGACAACTAACGCGG+AGG + tig0012395:9623-9642 Msa1351920:CDS 60.0%
CCGTAGGCGGAGATGGAAAC+GGG - tig0012395:9777-9796 None:intergenic 60.0%
CCCGTTTCCATCTCCGCCTA+CGG + tig0012395:9774-9793 Msa1351920:CDS 60.0%
!! ACGAGTGGTGTCACCGTAGG+CGG - tig0012395:9790-9809 None:intergenic 60.0%
! CAGCACGCGCTTTCTAGCAC+CGG + tig0012395:9825-9844 Msa1351920:CDS 60.0%
! CGACATGCTGTTCTGGGCAG+TGG + tig0012395:10841-10860 Msa1351920:CDS 60.0%
GGAGGACCTCCACTAACCAG+TGG + tig0012395:11037-11056 Msa1351920:CDS 60.0%
GCTCAGACACAGCAACAGGG+GGG + tig0012395:11133-11152 Msa1351920:CDS 60.0%
GCCATGAATCCACCCCCAGT+TGG + tig0012395:11274-11293 Msa1351920:CDS 60.0%
! CCCAACTGGGGGTGGATTCA+TGG - tig0012395:11278-11297 None:intergenic 60.0%
TCTTGAAGCCCAACTGGGGG+TGG - tig0012395:11286-11305 None:intergenic 60.0%
!! CAACTACACCGGTGCCACCT+AGG + tig0012395:11581-11600 Msa1351920:CDS 60.0%
CCAACAGTCCTAGGTGGCAC+CGG - tig0012395:11592-11611 None:intergenic 60.0%
ACTCCGTTGCGGAACAGTGC+GGG - tig0012395:11701-11720 None:intergenic 60.0%
CACTCCGTTGCGGAACAGTG+CGG - tig0012395:11702-11721 None:intergenic 60.0%
CCCGAGTCAAACCCCGATTC+AGG + tig0012395:12526-12545 Msa1351920:CDS 60.0%
! CGCGGAGGCGCAGTATACGA+CGG + tig0012395:9638-9657 Msa1351920:CDS 65.0%
! GGTGTCACCGTAGGCGGAGA+TGG - tig0012395:9784-9803 None:intergenic 65.0%
AGCGCGTGCTGTACAGACGC+AGG - tig0012395:9816-9835 None:intergenic 65.0%
!! CCGGTGCCACCTAGGACTGT+TGG + tig0012395:11589-11608 Msa1351920:CDS 65.0%
ACCCCCGCACTGTTCCGCAA+CGG + tig0012395:11695-11714 Msa1351920:CDS 65.0%
TCCGTTGCGGAACAGTGCGG+GGG - tig0012395:11699-11718 None:intergenic 65.0%
CTCCGTTGCGGAACAGTGCG+GGG - tig0012395:11700-11719 None:intergenic 65.0%
CGCACTGTTCCGCAACGGAG+TGG + tig0012395:11700-11719 Msa1351920:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0012395 gene 9190 13839 9190 ID=Msa1351920;Name=Msa1351920
tig0012395 mRNA 9190 13839 9190 ID=Msa1351920-mRNA-1;Parent=Msa1351920;Name=Msa1351920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=422|1|1|1|1|1|3|1272|638
tig0012395 exon 9190 9873 9190 ID=Msa1351920-mRNA-1:exon:7915;Parent=Msa1351920-mRNA-1
tig0012395 exon 10807 12274 10807 ID=Msa1351920-mRNA-1:exon:7916;Parent=Msa1351920-mRNA-1
tig0012395 exon 12381 13839 12381 ID=Msa1351920-mRNA-1:exon:7917;Parent=Msa1351920-mRNA-1
tig0012395 five_prime_UTR 9190 9611 9190 ID=Msa1351920-mRNA-1:five_prime_utr;Parent=Msa1351920-mRNA-1
tig0012395 CDS 9612 9873 9612 ID=Msa1351920-mRNA-1:cds;Parent=Msa1351920-mRNA-1
tig0012395 CDS 10807 12274 10807 ID=Msa1351920-mRNA-1:cds;Parent=Msa1351920-mRNA-1
tig0012395 CDS 12381 12567 12381 ID=Msa1351920-mRNA-1:cds;Parent=Msa1351920-mRNA-1
tig0012395 three_prime_UTR 12568 13839 12568 ID=Msa1351920-mRNA-1:three_prime_utr;Parent=Msa1351920-mRNA-1
Gene Sequence

>Msa1351920

ATGGGCGGAGGTGGAGCGACAACTAACGCGGAGGCGCAGTATACGACGGCGAAGATATCGGTATGGTGGGATATAGAAAACTGTCATGTTCCTAAAGGCTCCGATCCACATGCAATTGCGCAGAATATCAGTTCAGCACTTGTTCGTATGAACTATTGTGGTCCCGTTTCCATCTCCGCCTACGGTGACACCACTCGTATACCTGCGTCTGTACAGCACGCGCTTTCTAGCACCGGAATTTCACTTAATCATGTTCCCGCCGGTGTGAAAGATGCAAGCGATAAGAAGATCCTTGTCGACATGCTGTTCTGGGCAGTGGACAACCCTGCACCTGCGAATTATTTATTGATTTCGGGTGATCGAGATTTTTCTAATGCCCTCCATCAACTGCGAATGAGGAGGTATAATATTCTTCTCGCACAACCTCAAAAAGCATCTGCACCACTAGTTGCAGCAGCTAAGAGTGTATGGCTTTGGACTACTCTCTTAGCTGGAGGACCTCCACTAACCAGTGGTGATACACAACAACTCAGTAATAGTAGCTTCTTACCGTCTTCTGAAACTATACAAGTTCCTGTCTCAAATGCTGCTCAGACACAGCAACAGGGGGGTCCCTATTCTGAAATTCATGCTGGAAATTCAAATGTTCAAAACGGAGGAAGGGGATTTGATTCTAGATATCAGGGTAGACCAACTTGGAGAAACCCGAGTCAACCAAATGGACCGAAAGCCATGAATCCACCCCCAGTTGGGCTTCAAGATAACCGTAATAATGTAAACAATTATCGACCTGGCAACTATAATCCAAATGTTCCTCAAAGTGGATCAACCACAAACTTTGAGCGCGCCAATTCTGATCCATTATGGAGCAATAATGGTAATCAACAAGGAAATCATCAAAATCAACAGGGAAATCATCAAAATCAACAGGGGAATCATCAAAATCCATATTCCCAGCCATTAAGACCAAACGGTTTTCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATTCTCCAAATTCCCATACTTTTGCAACTACACCGGTGCCACCTAGGACTGTTGGCAACAATTTCAGTACAGGATCACCTAGAACTGTGCCAGATATTGGCAATCTGAACATATCTGGTTATCCCAATAATGGTCATAACCCCCGCACTGTTCCGCAACGGAGTGGAGATTTGAAACCGAATCCTAAGAGTAGTGCTCCACTTCCGGTAAGATCAACGAATGAACAAAATGGACATATGGTGCATAGCAGTACCACTCAAGGCTATCCACATGGTCCAGAATATCAACCTACACACTCGACAGCAATGGGTAATAATAAACTTCCCTCTAATGGTAAGTGGGGATCTTCAGGTTGTCCTAAACCTTCTGAATATGTACAAGGCCTTATAGGTGTTGTTTTACTTGCCCTGAACTCACTAAAAAATGCCAAGATGATGCCAACTGAGAAGAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACCAATGTTAAGAAAGCTCTGGAGAGTGCTATGGAGCAGCAGATGGTGGTAAAACAAAATTTAGGTGCTTTAACGCTGTATGTTGGTAAGAATGACAAACTCTGGAAGTGTGTAAATCCCTTAGGTGGAAATCCTAAACAGCACTCCAAAGAAATTTGGGACGAAATTCAAAATTTTCTAACAACCCCTGCTGGTAGATCGGCAATAATGGATACACAGTGCAAGTATGAAGCAGGTATTGTGATAAAGAGCATGTGTTTTAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACATGGTGATAACCCATAAAAAATGGATAATTCATCAGCAGTCTGGCTGGCAACCACTCATCCTTACTCTTCCCGAGTCAAACCCCGATTCAGGGGTGACTTCTGACGCATAG
Protein sequence

>Msa1351920

MGGGGATTNAEAQYTTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLTSGDTQQLSNSSFLPSSETIQVPVSNAAQTQQQGGPYSEIHAGNSNVQNGGRGFDSRYQGRPTWRNPSQPNGPKAMNPPPVGLQDNRNNVNNYRPGNYNPNVPQSGSTTNFERANSDPLWSNNGNQQGNHQNQQGNHQNQQGNHQNPYSQPLRPNGFPLQPPFAPSNSYSPNSHTFATTPVPPRTVGNNFSTGSPRTVPDIGNLNISGYPNNGHNPRTVPQRSGDLKPNPKSSAPLPVRSTNEQNGHMVHSSTTQGYPHGPEYQPTHSTAMGNNKLPSNGKWGSSGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTNVKKALESAMEQQMVVKQNLGALTLYVGKNDKLWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGRSAIMDTQCKYEAGIVIKSMCFKDLALGDVLQILNMVITHKKWIIHQQSGWQPLILTLPESNPDSGVTSDA*