Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229150 | XP_003608501.1 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 6.42e-104 | 303 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229150 | sp|O22584|RS14_LUPLU | 94.928 | 138 | 7 | 0 | 3 | 140 | 2 | 139 | 1.49e-91 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229150 | B7FGP1 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 3.07e-104 | 303 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027590 | Msa0229150 | 0.811134 | 8.147860e-51 | -8.615850e-47 |
| Msa0032780 | Msa0229150 | 0.883150 | 5.722638e-71 | -8.615850e-47 |
| Msa0032810 | Msa0229150 | 0.811565 | 6.569648e-51 | -8.615850e-47 |
| Msa0044990 | Msa0229150 | 0.813507 | 2.471494e-51 | -8.615850e-47 |
| Msa0045730 | Msa0229150 | 0.816025 | 6.840588e-52 | -8.615850e-47 |
| Msa0072570 | Msa0229150 | 0.802274 | 6.063606e-49 | -8.615850e-47 |
| Msa0075350 | Msa0229150 | 0.813272 | 2.784282e-51 | -8.615850e-47 |
| Msa0085780 | Msa0229150 | 0.803117 | 4.063118e-49 | -8.615850e-47 |
| Msa0090580 | Msa0229150 | 0.807415 | 5.111252e-50 | -8.615850e-47 |
| Msa0091750 | Msa0229150 | 0.813716 | 2.223086e-51 | -8.615850e-47 |
| Msa0114570 | Msa0229150 | 0.832046 | 1.181607e-55 | -8.615850e-47 |
| Msa0115870 | Msa0229150 | 0.804273 | 2.338283e-49 | -8.615850e-47 |
| Msa0133540 | Msa0229150 | 0.802227 | 6.199015e-49 | -8.615850e-47 |
| Msa0172930 | Msa0229150 | 0.822123 | 2.802907e-53 | -8.615850e-47 |
| Msa0181490 | Msa0229150 | 0.801515 | 8.684232e-49 | -8.615850e-47 |
| Msa0192750 | Msa0229150 | 0.852654 | 4.006964e-61 | -8.615850e-47 |
| Msa0199620 | Msa0229150 | 0.813982 | 1.942667e-51 | -8.615850e-47 |
| Msa0210330 | Msa0229150 | 0.817013 | 4.109223e-52 | -8.615850e-47 |
| Msa0210360 | Msa0229150 | 0.823002 | 1.750730e-53 | -8.615850e-47 |
| Msa0222730 | Msa0229150 | 0.810429 | 1.157787e-50 | -8.615850e-47 |
| Msa0229150 | Msa0230490 | 0.841228 | 5.397107e-58 | -8.615850e-47 |
| Msa0229150 | Msa0235050 | 0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa0229150 | Msa0281370 | 0.822932 | 1.818272e-53 | -8.615850e-47 |
| Msa0229150 | Msa0298870 | 0.801166 | 1.023686e-48 | -8.615850e-47 |
| Msa0229150 | Msa0306690 | 0.801025 | 1.093981e-48 | -8.615850e-47 |
| Msa0229150 | Msa0312210 | 0.802954 | 4.389871e-49 | -8.615850e-47 |
| Msa0229150 | Msa0319640 | 0.805350 | 1.393016e-49 | -8.615850e-47 |
| Msa0229150 | Msa0334030 | 0.815592 | 8.544807e-52 | -8.615850e-47 |
| Msa0229150 | Msa0337670 | 0.804900 | 1.730013e-49 | -8.615850e-47 |
| Msa0229150 | Msa0348830 | 0.804722 | 1.884278e-49 | -8.615850e-47 |
| Msa0229150 | Msa0376830 | 0.861680 | 8.653029e-64 | -8.615850e-47 |
| Msa0229150 | Msa0481850 | 0.845689 | 3.472631e-59 | -8.615850e-47 |
| Msa0229150 | Msa0516810 | 0.828054 | 1.112654e-54 | -8.615850e-47 |
| Msa0229150 | Msa0546030 | 0.871459 | 6.727800e-67 | -8.615850e-47 |
| Msa0229150 | Msa0550420 | 0.864218 | 1.424294e-64 | -8.615850e-47 |
| Msa0229150 | Msa0584030 | 0.822736 | 2.018941e-53 | -8.615850e-47 |
| Msa0229150 | Msa0588630 | -0.807780 | 4.275455e-50 | -8.615850e-47 |
| Msa0229150 | Msa0615580 | 0.800557 | 1.362660e-48 | -8.615850e-47 |
| Msa0229150 | Msa0617540 | 0.870282 | 1.641324e-66 | -8.615850e-47 |
| Msa0229150 | Msa0622230 | 0.843437 | 1.402132e-58 | -8.615850e-47 |
| Msa0229150 | Msa0622750 | 0.834666 | 2.626730e-56 | -8.615850e-47 |
| Msa0229150 | Msa0623200 | 0.801000 | 1.107026e-48 | -8.615850e-47 |
| Msa0229150 | Msa0656410 | 0.851403 | 9.081756e-61 | -8.615850e-47 |
| Msa0229150 | Msa0698780 | 0.860665 | 1.762961e-63 | -8.615850e-47 |
| Msa0229150 | Msa0705800 | 0.868622 | 5.693286e-66 | -8.615850e-47 |
| Msa0229150 | Msa0712610 | 0.856295 | 3.544188e-62 | -8.615850e-47 |
| Msa0229150 | Msa0745970 | 0.806073 | 9.820919e-50 | -8.615850e-47 |
| Msa0229150 | Msa0748350 | 0.825991 | 3.465747e-54 | -8.615850e-47 |
| Msa0229150 | Msa0752910 | 0.812943 | 3.287188e-51 | -8.615850e-47 |
| Msa0229150 | Msa0781080 | 0.874091 | 8.854545e-68 | -8.615850e-47 |
| Msa0229150 | Msa0822580 | 0.825293 | 5.072417e-54 | -8.615850e-47 |
| Msa0229150 | Msa0876170 | 0.854131 | 1.509749e-61 | -8.615850e-47 |
| Msa0229150 | Msa0888810 | 0.821384 | 4.155511e-53 | -8.615850e-47 |
| Msa0229150 | Msa0915540 | 0.809482 | 1.851509e-50 | -8.615850e-47 |
| Msa0229150 | Msa1010310 | 0.824415 | 8.171274e-54 | -8.615850e-47 |
| Msa0229150 | Msa1037290 | 0.820150 | 7.986980e-53 | -8.615850e-47 |
| Msa0229150 | Msa1042780 | 0.807140 | 5.846871e-50 | -8.615850e-47 |
| Msa0229150 | Msa1080350 | 0.844978 | 5.406253e-59 | -8.615850e-47 |
| Msa0229150 | Msa1082170 | 0.821685 | 3.540707e-53 | -8.615850e-47 |
| Msa0229150 | Msa1085420 | 0.863043 | 3.298892e-64 | -8.615850e-47 |
| Msa0229150 | Msa1094380 | 0.816187 | 6.292154e-52 | -8.615850e-47 |
| Msa0229150 | Msa1125860 | 0.846319 | 2.341111e-59 | -8.615850e-47 |
| Msa0229150 | Msa1126060 | 0.850864 | 1.288789e-60 | -8.615850e-47 |
| Msa0229150 | Msa1126520 | 0.863151 | 3.054128e-64 | -8.615850e-47 |
| Msa0229150 | Msa1164150 | 0.817017 | 4.100410e-52 | -8.615850e-47 |
| Msa0229150 | Msa1165640 | 0.848423 | 6.187580e-60 | -8.615850e-47 |
| Msa0229150 | Msa1186030 | 0.807628 | 4.606356e-50 | -8.615850e-47 |
| Msa0229150 | Msa1256840 | 0.832059 | 1.173168e-55 | -8.615850e-47 |
| Msa0229150 | Msa1277260 | 0.809740 | 1.629504e-50 | -8.615850e-47 |
| Msa0229150 | Msa1311400 | 0.830997 | 2.142171e-55 | -8.615850e-47 |
| Msa0229150 | Msa1315890 | 0.800391 | 1.473198e-48 | -8.615850e-47 |
| Msa0229150 | Msa1332250 | 0.814768 | 1.302181e-51 | -8.615850e-47 |
| Msa0229150 | Msa1338190 | 0.800711 | 1.267802e-48 | -8.615850e-47 |
| Msa0229150 | Msa1351920 | -0.816871 | 4.422129e-52 | -8.615850e-47 |
| Msa0229150 | Msa1356790 | 0.856957 | 2.263353e-62 | -8.615850e-47 |
| Msa0229150 | Msa1362210 | 0.859115 | 5.171375e-63 | -8.615850e-47 |
| Msa0229150 | Msa1362790 | 0.835671 | 1.464956e-56 | -8.615850e-47 |
| Msa0229150 | Msa1364480 | 0.814511 | 1.484423e-51 | -8.615850e-47 |
| Msa0229150 | Msa1368920 | 0.819956 | 8.846579e-53 | -8.615850e-47 |
| Msa0229150 | Msa1376660 | 0.809235 | 2.091614e-50 | -8.615850e-47 |
| Msa0229150 | Msa1393000 | 0.807691 | 4.466659e-50 | -8.615850e-47 |
| Msa0229150 | Msa1406080 | 0.804695 | 1.909543e-49 | -8.615850e-47 |
| Msa0229150 | Msa1418770 | 0.824331 | 8.553313e-54 | -8.615850e-47 |
| Msa0229150 | Msa1420430 | 0.809037 | 2.305922e-50 | -8.615850e-47 |
| Msa0229150 | Msa1445370 | 0.807079 | 6.022484e-50 | -8.615850e-47 |
| Msa0229150 | Msa1446410 | 0.834865 | 2.340676e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229150 | MtrunA17_Chr4g0052211 | 100.000 | 151 | 0 | 0 | 1 | 151 | 1 | 151 | 5.90e-108 | 303 |
| Msa0229150 | MtrunA17_Chr2g0286111 | 98.675 | 151 | 2 | 0 | 1 | 151 | 1 | 151 | 8.04e-107 | 301 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0229150 | AT3G11510.1 | 90.580 | 138 | 13 | 0 | 3 | 140 | 2 | 139 | 9.44e-91 | 260 |
| Msa0229150 | AT3G52580.1 | 89.855 | 138 | 14 | 0 | 3 | 140 | 2 | 139 | 3.52e-90 | 259 |
| Msa0229150 | AT2G36160.1 | 89.130 | 138 | 15 | 0 | 3 | 140 | 2 | 139 | 1.91e-89 | 257 |
| Msa0229150 | ATCG00750.1 | 33.613 | 119 | 70 | 2 | 29 | 147 | 28 | 137 | 7.74e-12 | 59.7 |
Find 80 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTAATTTGTATTGGTTTC+TGG | 0.138864 | 2_2:+764803 | Msa0229150:three_prime_UTR |
| AAGAAATTTATCTATGGATT+AGG | 0.216710 | 2_2:-762174 | None:intergenic |
| CCCTTATGAGTATAACTTAA+TGG | 0.218904 | 2_2:+764695 | Msa0229150:three_prime_UTR |
| CTGAGTTTGCTATGGTATTA+TGG | 0.243579 | 2_2:+764412 | Msa0229150:exon |
| CTGAACCTGTTAGCTCAAAA+TGG | 0.257656 | 2_2:-762110 | None:intergenic |
| TATATCTTGGGCTGGGCTTT+TGG | 0.261459 | 2_2:-762139 | None:intergenic |
| ATAAAGTCATGTAGAACTTT+TGG | 0.283858 | 2_2:-764560 | None:intergenic |
| AGAGTCACTGTTTCTTCCTT+TGG | 0.286906 | 2_2:-762504 | None:intergenic |
| CACGATGAAGGTATCGTTAA+AGG | 0.289627 | 2_2:-762583 | None:intergenic |
| AGAAATTTATCTATGGATTA+GGG | 0.303040 | 2_2:-762173 | None:intergenic |
| GGGTGCTGTCAGAAGGAATT+GGG | 0.306077 | 2_2:-764358 | None:intergenic |
| TTTCTTTCCAGACTGTATTA+TGG | 0.314408 | 2_2:+764476 | Msa0229150:three_prime_UTR |
| GAAACACTTGTCCGTATTAC+TGG | 0.323177 | 2_2:+762721 | Msa0229150:CDS |
| TACCCCTTCTACCACTCTTT+CGG | 0.329294 | 2_2:-764382 | None:intergenic |
| CGGGTGCTGTCAGAAGGAAT+TGG | 0.336102 | 2_2:-764359 | None:intergenic |
| GCCATTAAGTTATACTCATA+AGG | 0.376078 | 2_2:-764696 | None:intergenic |
| CGGAGAGCAGCCTGAGCACC+AGG | 0.397348 | 2_2:-764036 | None:intergenic |
| AACACCAGGCCCTGGTGCTC+AGG | 0.414511 | 2_2:+764026 | Msa0229150:CDS |
| CTCCGAGCCTTGGCTCGGTC+AGG | 0.414628 | 2_2:+764054 | Msa0229150:CDS |
| GAGAAGAAGAAATTTATCTA+TGG | 0.418279 | 2_2:-762180 | None:intergenic |
| CCCGCCGAAAGAGTGGTAGA+AGG | 0.418808 | 2_2:+764378 | Msa0229150:CDS |
| TGTGAAAGTATATCTTGGGC+TGG | 0.427287 | 2_2:-762147 | None:intergenic |
| CAGCATGTAACTGATTTGTC+TGG | 0.432105 | 2_2:+762694 | Msa0229150:intron |
| TCAGGCTGCTCTCCGAGCCT+TGG | 0.439119 | 2_2:+764044 | Msa0229150:CDS |
| CGTACCATTGTTGAAGGTGT+TGG | 0.439846 | 2_2:-762281 | None:intergenic |
| GCAGCCTGAGCACCAGGGCC+TGG | 0.441174 | 2_2:-764030 | None:intergenic |
| AAATGCAATTACCTTGCATC+TGG | 0.446928 | 2_2:-763822 | None:intergenic |
| CCATCTTTCAGGTGGAATGA+AGG | 0.450051 | 2_2:+763736 | Msa0229150:intron |
| ACGTTGGTTGTAATTTGTAT+TGG | 0.453065 | 2_2:+764796 | Msa0229150:three_prime_UTR |
| AGAGTGGTAGAAGGGGTAGA+AGG | 0.460011 | 2_2:+764387 | Msa0229150:CDS |
| GTGAAAGTATATCTTGGGCT+GGG | 0.467093 | 2_2:-762146 | None:intergenic |
| CCCTTCTACCACTCTTTCGG+CGG | 0.475876 | 2_2:-764379 | None:intergenic |
| CCATTAAGTTATACTCATAA+GGG | 0.478409 | 2_2:-764695 | None:intergenic |
| TGTTCACCATCTTTAACAGC+TGG | 0.478914 | 2_2:-762531 | None:intergenic |
| GTTCTCTCTGAAGAAGAAGA+AGG | 0.479425 | 2_2:+762231 | Msa0229150:five_prime_UTR |
| CTGCTCTCCGAGCCTTGGCT+CGG | 0.481498 | 2_2:+764049 | Msa0229150:CDS |
| CACATCAAACTCCGTGCCAC+TGG | 0.484727 | 2_2:+763988 | Msa0229150:CDS |
| TGTGTTCTGGAACAGGAGTT+GGG | 0.489912 | 2_2:+763952 | Msa0229150:intron |
| CAAATTACAACCAACGTAAG+TGG | 0.493896 | 2_2:-764761 | None:intergenic |
| CAGAGAGAACAAAGCTTCGA+TGG | 0.494527 | 2_2:-762218 | None:intergenic |
| GCACGCCGGCGGATTGAAGC+AGG | 0.498204 | 2_2:+762255 | Msa0229150:five_prime_UTR |
| AGTGGGAATTTCACAGCCAT+TGG | 0.498585 | 2_2:-764743 | None:intergenic |
| TGAACCTGTTAGCTCAAAAT+GGG | 0.499511 | 2_2:-762109 | None:intergenic |
| GAATATGCCATAATACAGTC+TGG | 0.507182 | 2_2:-764483 | None:intergenic |
| TTTAGTCTTGTTTCCTCCAG+TGG | 0.507848 | 2_2:-764004 | None:intergenic |
| GGATTCCTGCTTCAATCCGC+CGG | 0.508270 | 2_2:-762260 | None:intergenic |
| AAACACACTTACCAGTAATA+CGG | 0.508460 | 2_2:-762732 | None:intergenic |
| CCTTCTACCACTCTTTCGGC+GGG | 0.512822 | 2_2:-764378 | None:intergenic |
| GCAGCAAGCATAGCAGCATA+TGG | 0.514159 | 2_2:-763785 | None:intergenic |
| GCTCGGTCAGGAATGAAAAT+CGG | 0.525104 | 2_2:+764066 | Msa0229150:CDS |
| TGCAATTACCTTGCATCTGG+TGG | 0.525795 | 2_2:-763819 | None:intergenic |
| AGTTAACGTACCATTGTTGA+AGG | 0.530074 | 2_2:-762287 | None:intergenic |
| CCGCCGAAAGAGTGGTAGAA+GGG | 0.532687 | 2_2:+764379 | Msa0229150:CDS |
| AAGGAAGAAACAGTGACTCT+TGG | 0.536189 | 2_2:+762507 | Msa0229150:CDS |
| TTTCGGCGGGTGCTGTCAGA+AGG | 0.542032 | 2_2:-764365 | None:intergenic |
| GGTAAATAGACTCACGATGA+AGG | 0.542298 | 2_2:-762595 | None:intergenic |
| ATTGTAGTCGTCGAAGAGAA+AGG | 0.542368 | 2_2:+762473 | Msa0229150:intron |
| TCTTGTTTCCTCCAGTGGCA+CGG | 0.542571 | 2_2:-763999 | None:intergenic |
| TTCCTGACCGAGCCAAGGCT+CGG | 0.542845 | 2_2:-764056 | None:intergenic |
| CTTGGTCCAGCTGTTAAAGA+TGG | 0.556489 | 2_2:+762525 | Msa0229150:CDS |
| AAGACTAAAACACCAGGCCC+TGG | 0.563534 | 2_2:+764018 | Msa0229150:CDS |
| GAGAAAGGTTAGAGAGCCAA+AGG | 0.564924 | 2_2:+762488 | Msa0229150:CDS |
| GTTTGCTATGGTATTATGGA+AGG | 0.571748 | 2_2:+764416 | Msa0229150:three_prime_UTR |
| AGAAGGCTCTGAGTTTGCTA+TGG | 0.575425 | 2_2:+764404 | Msa0229150:exon |
| GAATCCAACACCTTCAACAA+TGG | 0.577889 | 2_2:+762277 | Msa0229150:exon |
| GACAGCACCCGCCGAAAGAG+TGG | 0.584213 | 2_2:+764371 | Msa0229150:CDS |
| TTTCATTCCTGACCGAGCCA+AGG | 0.585926 | 2_2:-764061 | None:intergenic |
| ACTTACTATTAAAATACCAA+TGG | 0.590835 | 2_2:+764727 | Msa0229150:three_prime_UTR |
| AAATTACAACCAACGTAAGT+GGG | 0.595719 | 2_2:-764760 | None:intergenic |
| GGAATGAAAATCGGTCGCAT+AGG | 0.601542 | 2_2:+764075 | Msa0229150:CDS |
| ATCAAACTCCGTGCCACTGG+AGG | 0.606930 | 2_2:+763991 | Msa0229150:CDS |
| AAGAAGAAGGTGCACGCCGG+CGG | 0.611862 | 2_2:+762244 | Msa0229150:five_prime_UTR |
| AGATGTCGCCACCAGATGCA+AGG | 0.617051 | 2_2:+763811 | Msa0229150:CDS |
| AGCATGTAACTGATTTGTCT+GGG | 0.620131 | 2_2:+762695 | Msa0229150:intron |
| GGTGCTGTCAGAAGGAATTG+GGG | 0.625333 | 2_2:-764357 | None:intergenic |
| CGCCGAAAGAGTGGTAGAAG+GGG | 0.627165 | 2_2:+764380 | Msa0229150:CDS |
| GGAGAGCAGCCTGAGCACCA+GGG | 0.647832 | 2_2:-764035 | None:intergenic |
| AAGAAGAAGAAGGTGCACGC+CGG | 0.658500 | 2_2:+762241 | Msa0229150:five_prime_UTR |
| GGAAACAAGACTAAAACACC+AGG | 0.683642 | 2_2:+764012 | Msa0229150:CDS |
| TGTGAAATTCCCACTTACGT+TGG | 0.693028 | 2_2:+764751 | Msa0229150:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATTTCAATTTCAA+AGG | - | chr2_2:762403-762422 | None:intergenic | 15.0% |
| !! | AAAAATAAGTCAATCAAAAT+GGG | - | chr2_2:763035-763054 | None:intergenic | 15.0% |
| !! | AAAAAATAAGTCAATCAAAA+TGG | - | chr2_2:763036-763055 | None:intergenic | 15.0% |
| !!! | AGAAATTTATCTATGGATTA+GGG | - | chr2_2:762176-762195 | None:intergenic | 20.0% |
| !! | AAGAAATTTATCTATGGATT+AGG | - | chr2_2:762177-762196 | None:intergenic | 20.0% |
| !! | TTATTACAGATCAATGTTTA+TGG | - | chr2_2:762313-762332 | None:intergenic | 20.0% |
| !! | AAAAAACACACAAAACAATT+TGG | - | chr2_2:762639-762658 | None:intergenic | 20.0% |
| !! | ACTTATCATGATTAGATATA+TGG | + | chr2_2:763009-763028 | Msa0229150:intron | 20.0% |
| !! | AACACCAAATAAAAAACATT+TGG | + | chr2_2:763485-763504 | Msa0229150:intron | 20.0% |
| !! | ACACCAAATAAAAAACATTT+GGG | + | chr2_2:763486-763505 | Msa0229150:intron | 20.0% |
| !! | ACCCATAATGAAAAATATTT+GGG | - | chr2_2:763626-763645 | None:intergenic | 20.0% |
| !! | AACCCATAATGAAAAATATT+TGG | - | chr2_2:763627-763646 | None:intergenic | 20.0% |
| !! | ATTCAATCAAATTAAAAGCA+GGG | - | chr2_2:763889-763908 | None:intergenic | 20.0% |
| !! | AATTCAATCAAATTAAAAGC+AGG | - | chr2_2:763890-763909 | None:intergenic | 20.0% |
| !!! | TATTCTTTTAGTCCATTTTT+AGG | + | chr2_2:764098-764117 | Msa0229150:intron | 20.0% |
| !! | AATACAAAATAAGAGTAACT+GGG | - | chr2_2:764245-764264 | None:intergenic | 20.0% |
| !! | CTGCAAATTTAAAAAACAAA+AGG | - | chr2_2:764328-764347 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTTAAATTTGCAG+AGG | + | chr2_2:764328-764347 | Msa0229150:intron | 20.0% |
| !!! | TATTTGATTTACATCTTTTG+CGG | + | chr2_2:764628-764647 | Msa0229150:three_prime_UTR | 20.0% |
| !! | ACTTACTATTAAAATACCAA+TGG | + | chr2_2:764727-764746 | Msa0229150:three_prime_UTR | 20.0% |
| !!! | GTTTTGTGAAAGTATATCTT+GGG | - | chr2_2:762154-762173 | None:intergenic | 25.0% |
| ! | GAGAAGAAGAAATTTATCTA+TGG | - | chr2_2:762183-762202 | None:intergenic | 25.0% |
| !! | TATGTTTGATATGTGTTTTG+TGG | + | chr2_2:762879-762898 | Msa0229150:intron | 25.0% |
| !! | TAAGTTGGAAATAACCAAAA+GGG | - | chr2_2:762979-762998 | None:intergenic | 25.0% |
| !! | ATAAGTTGGAAATAACCAAA+AGG | - | chr2_2:762980-762999 | None:intergenic | 25.0% |
| ! | AAAAATAAGCTAATCCTAAC+AGG | + | chr2_2:763158-763177 | Msa0229150:intron | 25.0% |
| ! | TAGCTTATATGAAAACACTT+GGG | - | chr2_2:763220-763239 | None:intergenic | 25.0% |
| ! | ATAGCTTATATGAAAACACT+TGG | - | chr2_2:763221-763240 | None:intergenic | 25.0% |
| ! | AAAATTGTAAATGGCAAGAA+GGG | - | chr2_2:763421-763440 | None:intergenic | 25.0% |
| ! | TTGCTCCATTTATATTATCA+GGG | - | chr2_2:763450-763469 | None:intergenic | 25.0% |
| ! | ATTGCTCCATTTATATTATC+AGG | - | chr2_2:763451-763470 | None:intergenic | 25.0% |
| !! | TGCCCAAATATTTTTCATTA+TGG | + | chr2_2:763621-763640 | Msa0229150:intron | 25.0% |
| !! | GCCCAAATATTTTTCATTAT+GGG | + | chr2_2:763622-763641 | Msa0229150:intron | 25.0% |
| ! | TTCAATCAAATTAAAAGCAG+GGG | - | chr2_2:763888-763907 | None:intergenic | 25.0% |
| ! | GAATACAAAATAAGAGTAAC+TGG | - | chr2_2:764246-764265 | None:intergenic | 25.0% |
| !! | ATAAAGTCATGTAGAACTTT+TGG | - | chr2_2:764563-764582 | None:intergenic | 25.0% |
| ! | CCATTAAGTTATACTCATAA+GGG | - | chr2_2:764698-764717 | None:intergenic | 25.0% |
| !!! | TTGTAATTTGTATTGGTTTC+TGG | + | chr2_2:764803-764822 | Msa0229150:three_prime_UTR | 25.0% |
| !! | GGTTTTGTGAAAGTATATCT+TGG | - | chr2_2:762155-762174 | None:intergenic | 30.0% |
| ATTTCACTACGAACACTTTA+TGG | + | chr2_2:762332-762351 | Msa0229150:intron | 30.0% | |
| !!! | TGTTTTTCTCTAAGATCTGA+TGG | + | chr2_2:762427-762446 | Msa0229150:intron | 30.0% |
| ! | AAAGATGGTGAACAAGTTTT+TGG | + | chr2_2:762540-762559 | Msa0229150:CDS | 30.0% |
| TGGAATGAATGATAAAACGA+AGG | - | chr2_2:762619-762638 | None:intergenic | 30.0% | |
| AAACACACTTACCAGTAATA+CGG | - | chr2_2:762735-762754 | None:intergenic | 30.0% | |
| AATGCCAAAAGTGAAGATTT+GGG | + | chr2_2:762953-762972 | Msa0229150:intron | 30.0% | |
| AAATAGCTTATGAACCTGTT+AGG | - | chr2_2:763175-763194 | None:intergenic | 30.0% | |
| !! | ATTTTCCAAAATAGCTTGTG+AGG | - | chr2_2:763251-763270 | None:intergenic | 30.0% |
| !!! | ACACTTGTTTTAGAGAACTT+AGG | - | chr2_2:763357-763376 | None:intergenic | 30.0% |
| CAAAATTGTAAATGGCAAGA+AGG | - | chr2_2:763422-763441 | None:intergenic | 30.0% | |
| CTCTACCCTGATAATATAAA+TGG | + | chr2_2:763442-763461 | Msa0229150:intron | 30.0% | |
| AAATGGAGCAATTCTTCTAT+TGG | + | chr2_2:763459-763478 | Msa0229150:intron | 30.0% | |
| !!! | GTGCCCAAATGTTTTTTATT+TGG | - | chr2_2:763492-763511 | None:intergenic | 30.0% |
| ATAAATGAGCGATTCTACTA+TGG | - | chr2_2:763654-763673 | None:intergenic | 30.0% | |
| TGTCTAATTTACCATCTTTC+AGG | + | chr2_2:763725-763744 | Msa0229150:intron | 30.0% | |
| AAGCTAATTAGATACTAAGC+TGG | - | chr2_2:764304-764323 | None:intergenic | 30.0% | |
| !!! | AGCTGCTTCTGTTTTTATTT+TGG | + | chr2_2:764439-764458 | Msa0229150:three_prime_UTR | 30.0% |
| TCTGGAAAGAAACAAAAACA+CGG | - | chr2_2:764468-764487 | None:intergenic | 30.0% | |
| TTTCTTTCCAGACTGTATTA+TGG | + | chr2_2:764476-764495 | Msa0229150:three_prime_UTR | 30.0% | |
| ! | TGCTTCATCTAACTTTTGTT+CGG | + | chr2_2:764662-764681 | Msa0229150:three_prime_UTR | 30.0% |
| CCCTTATGAGTATAACTTAA+TGG | + | chr2_2:764695-764714 | Msa0229150:three_prime_UTR | 30.0% | |
| GCCATTAAGTTATACTCATA+AGG | - | chr2_2:764699-764718 | None:intergenic | 30.0% | |
| AAATTACAACCAACGTAAGT+GGG | - | chr2_2:764763-764782 | None:intergenic | 30.0% | |
| !!! | TTTGTTTTTTGAAGACACGT+TGG | + | chr2_2:764780-764799 | Msa0229150:three_prime_UTR | 30.0% |
| ! | ACGTTGGTTGTAATTTGTAT+TGG | + | chr2_2:764796-764815 | Msa0229150:three_prime_UTR | 30.0% |
| AGTTAACGTACCATTGTTGA+AGG | - | chr2_2:762290-762309 | None:intergenic | 35.0% | |
| ! | AGATCTGATGGTTTGTGAAA+TGG | + | chr2_2:762439-762458 | Msa0229150:intron | 35.0% |
| !! | AGCATGTAACTGATTTGTCT+GGG | + | chr2_2:762695-762714 | Msa0229150:intron | 35.0% |
| !! | TTTGTGGAACTCTGTTTCTA+TGG | + | chr2_2:762895-762914 | Msa0229150:intron | 35.0% |
| CAATGCCAAAAGTGAAGATT+TGG | + | chr2_2:762952-762971 | Msa0229150:intron | 35.0% | |
| TAAGTGCACACACTATAAGT+TGG | - | chr2_2:762994-763013 | None:intergenic | 35.0% | |
| ACATTATGCAAAGCAGCTTA+CGG | - | chr2_2:763136-763155 | None:intergenic | 35.0% | |
| GGGTAGAGCAAAATTGTAAA+TGG | - | chr2_2:763430-763449 | None:intergenic | 35.0% | |
| CTAATTTACCATCTTTCAGG+TGG | + | chr2_2:763728-763747 | Msa0229150:intron | 35.0% | |
| AAATGCAATTACCTTGCATC+TGG | - | chr2_2:763825-763844 | None:intergenic | 35.0% | |
| CAAAATAAGAGTAACTGGGA+AGG | - | chr2_2:764241-764260 | None:intergenic | 35.0% | |
| !! | CTGAGTTTGCTATGGTATTA+TGG | + | chr2_2:764412-764431 | Msa0229150:exon | 35.0% |
| !! | GTTTGCTATGGTATTATGGA+AGG | + | chr2_2:764416-764435 | Msa0229150:three_prime_UTR | 35.0% |
| GAATATGCCATAATACAGTC+TGG | - | chr2_2:764486-764505 | None:intergenic | 35.0% | |
| CAAATTACAACCAACGTAAG+TGG | - | chr2_2:764764-764783 | None:intergenic | 35.0% | |
| ! | GTGAAAGTATATCTTGGGCT+GGG | - | chr2_2:762149-762168 | None:intergenic | 40.0% |
| ! | TGTGAAAGTATATCTTGGGC+TGG | - | chr2_2:762150-762169 | None:intergenic | 40.0% |
| ! | GTTCTCTCTGAAGAAGAAGA+AGG | + | chr2_2:762231-762250 | Msa0229150:five_prime_UTR | 40.0% |
| GAATCCAACACCTTCAACAA+TGG | + | chr2_2:762277-762296 | Msa0229150:exon | 40.0% | |
| ! | CTGATGGTTTGTGAAATGGT+TGG | + | chr2_2:762443-762462 | Msa0229150:intron | 40.0% |
| ATTGTAGTCGTCGAAGAGAA+AGG | + | chr2_2:762473-762492 | Msa0229150:intron | 40.0% | |
| ! | AGAGTCACTGTTTCTTCCTT+TGG | - | chr2_2:762507-762526 | None:intergenic | 40.0% |
| AAGGAAGAAACAGTGACTCT+TGG | + | chr2_2:762507-762526 | Msa0229150:CDS | 40.0% | |
| TGTTCACCATCTTTAACAGC+TGG | - | chr2_2:762534-762553 | None:intergenic | 40.0% | |
| !! | CACGATGAAGGTATCGTTAA+AGG | - | chr2_2:762586-762605 | None:intergenic | 40.0% |
| GGTAAATAGACTCACGATGA+AGG | - | chr2_2:762598-762617 | None:intergenic | 40.0% | |
| !! | CAGCATGTAACTGATTTGTC+TGG | + | chr2_2:762694-762713 | Msa0229150:intron | 40.0% |
| GAAACACTTGTCCGTATTAC+TGG | + | chr2_2:762721-762740 | Msa0229150:CDS | 40.0% | |
| !! | AATTTGCTGATCCTGTGTTC+TGG | + | chr2_2:763939-763958 | Msa0229150:intron | 40.0% |
| !! | TTTAGTCTTGTTTCCTCCAG+TGG | - | chr2_2:764007-764026 | None:intergenic | 40.0% |
| GGAAACAAGACTAAAACACC+AGG | + | chr2_2:764012-764031 | Msa0229150:CDS | 40.0% | |
| CACGACATGCATCCTAAAAA+TGG | - | chr2_2:764113-764132 | None:intergenic | 40.0% | |
| !!! | CATTTTTAGGATGCATGTCG+TGG | + | chr2_2:764111-764130 | Msa0229150:intron | 40.0% |
| TGTGAAATTCCCACTTACGT+TGG | + | chr2_2:764751-764770 | Msa0229150:three_prime_UTR | 40.0% | |
| !! | TATATCTTGGGCTGGGCTTT+TGG | - | chr2_2:762142-762161 | None:intergenic | 45.0% |
| CAGAGAGAACAAAGCTTCGA+TGG | - | chr2_2:762221-762240 | None:intergenic | 45.0% | |
| ! | CGTACCATTGTTGAAGGTGT+TGG | - | chr2_2:762284-762303 | None:intergenic | 45.0% |
| GAGAAAGGTTAGAGAGCCAA+AGG | + | chr2_2:762488-762507 | Msa0229150:CDS | 45.0% | |
| CTTGGTCCAGCTGTTAAAGA+TGG | + | chr2_2:762525-762544 | Msa0229150:CDS | 45.0% | |
| ! | AGGGCCCAAATCTTCACTTT+TGG | - | chr2_2:762960-762979 | None:intergenic | 45.0% |
| ! | AGTGAAGATTTGGGCCCTTT+TGG | + | chr2_2:762962-762981 | Msa0229150:intron | 45.0% |
| ! | CCAAAATAGCTTGTGAGGAC+AGG | - | chr2_2:763246-763265 | None:intergenic | 45.0% |
| ! | CCTGTCCTCACAAGCTATTT+TGG | + | chr2_2:763243-763262 | Msa0229150:intron | 45.0% |
| AATGGCAAGAAGGGTCTGTT+TGG | - | chr2_2:763412-763431 | None:intergenic | 45.0% | |
| ACATGCATCCAGCTGGTTAA+TGG | - | chr2_2:763689-763708 | None:intergenic | 45.0% | |
| CCTTCATTCCACCTGAAAGA+TGG | - | chr2_2:763739-763758 | None:intergenic | 45.0% | |
| ! | CCATCTTTCAGGTGGAATGA+AGG | + | chr2_2:763736-763755 | Msa0229150:intron | 45.0% |
| TGCAATTACCTTGCATCTGG+TGG | - | chr2_2:763822-763841 | None:intergenic | 45.0% | |
| !! | TGTGTTCTGGAACAGGAGTT+GGG | + | chr2_2:763952-763971 | Msa0229150:intron | 45.0% |
| GCTCGGTCAGGAATGAAAAT+CGG | + | chr2_2:764066-764085 | Msa0229150:CDS | 45.0% | |
| GGAATGAAAATCGGTCGCAT+AGG | + | chr2_2:764075-764094 | Msa0229150:CDS | 45.0% | |
| TACCCCTTCTACCACTCTTT+CGG | - | chr2_2:764385-764404 | None:intergenic | 45.0% | |
| !! | AGAAGGCTCTGAGTTTGCTA+TGG | + | chr2_2:764404-764423 | Msa0229150:exon | 45.0% |
| AGTGGGAATTTCACAGCCAT+TGG | - | chr2_2:764746-764765 | None:intergenic | 45.0% | |
| ! | AAGAAGAAGAAGGTGCACGC+CGG | + | chr2_2:762241-762260 | Msa0229150:five_prime_UTR | 50.0% |
| CTTCGTTGCCATTAACCAGC+TGG | + | chr2_2:763678-763697 | Msa0229150:intron | 50.0% | |
| GACTTAGACATGCATCCAGC+TGG | - | chr2_2:763696-763715 | None:intergenic | 50.0% | |
| GCAGCAAGCATAGCAGCATA+TGG | - | chr2_2:763788-763807 | None:intergenic | 50.0% | |
| !! | CTGATCCTGTGTTCTGGAAC+AGG | + | chr2_2:763945-763964 | Msa0229150:intron | 50.0% |
| CAACTCCTGTTCCAGAACAC+AGG | - | chr2_2:763953-763972 | None:intergenic | 50.0% | |
| !! | CTGTGTTCTGGAACAGGAGT+TGG | + | chr2_2:763951-763970 | Msa0229150:intron | 50.0% |
| ! | TCTTGTTTCCTCCAGTGGCA+CGG | - | chr2_2:764002-764021 | None:intergenic | 50.0% |
| AAGACTAAAACACCAGGCCC+TGG | + | chr2_2:764018-764037 | Msa0229150:CDS | 50.0% | |
| TTTCATTCCTGACCGAGCCA+AGG | - | chr2_2:764064-764083 | None:intergenic | 50.0% | |
| ATCACCAGCTTAGAGCAGCA+GGG | - | chr2_2:764147-764166 | None:intergenic | 50.0% | |
| ! | TCTAAGCTGGTGATGTGGTC+TGG | + | chr2_2:764153-764172 | Msa0229150:intron | 50.0% |
| ! | GGTGCTGTCAGAAGGAATTG+GGG | - | chr2_2:764360-764379 | None:intergenic | 50.0% |
| ! | GGGTGCTGTCAGAAGGAATT+GGG | - | chr2_2:764361-764380 | None:intergenic | 50.0% |
| AGAGTGGTAGAAGGGGTAGA+AGG | + | chr2_2:764387-764406 | Msa0229150:CDS | 50.0% | |
| GGATTCCTGCTTCAATCCGC+CGG | - | chr2_2:762263-762282 | None:intergenic | 55.0% | |
| AGATGTCGCCACCAGATGCA+AGG | + | chr2_2:763811-763830 | Msa0229150:CDS | 55.0% | |
| CACATCAAACTCCGTGCCAC+TGG | + | chr2_2:763988-764007 | Msa0229150:CDS | 55.0% | |
| ! | ATCAAACTCCGTGCCACTGG+AGG | + | chr2_2:763991-764010 | Msa0229150:CDS | 55.0% |
| ! | TGTTCCCTGCTGCTCTAAGC+TGG | + | chr2_2:764140-764159 | Msa0229150:intron | 55.0% |
| CATCACCAGCTTAGAGCAGC+AGG | - | chr2_2:764148-764167 | None:intergenic | 55.0% | |
| ! | GCTGCTCTAAGCTGGTGATG+TGG | + | chr2_2:764148-764167 | Msa0229150:intron | 55.0% |
| ! | CGGGTGCTGTCAGAAGGAAT+TGG | - | chr2_2:764362-764381 | None:intergenic | 55.0% |
| CCTTCTACCACTCTTTCGGC+GGG | - | chr2_2:764381-764400 | None:intergenic | 55.0% | |
| CCCTTCTACCACTCTTTCGG+CGG | - | chr2_2:764382-764401 | None:intergenic | 55.0% | |
| CCGCCGAAAGAGTGGTAGAA+GGG | + | chr2_2:764379-764398 | Msa0229150:CDS | 55.0% | |
| CGCCGAAAGAGTGGTAGAAG+GGG | + | chr2_2:764380-764399 | Msa0229150:CDS | 55.0% | |
| ! | AAGAAGAAGGTGCACGCCGG+CGG | + | chr2_2:762244-762263 | Msa0229150:five_prime_UTR | 60.0% |
| TTCCTGACCGAGCCAAGGCT+CGG | - | chr2_2:764059-764078 | None:intergenic | 60.0% | |
| ! | TTTCGGCGGGTGCTGTCAGA+AGG | - | chr2_2:764368-764387 | None:intergenic | 60.0% |
| CCCGCCGAAAGAGTGGTAGA+AGG | + | chr2_2:764378-764397 | Msa0229150:CDS | 60.0% | |
| AACACCAGGCCCTGGTGCTC+AGG | + | chr2_2:764026-764045 | Msa0229150:CDS | 65.0% | |
| GGAGAGCAGCCTGAGCACCA+GGG | - | chr2_2:764038-764057 | None:intergenic | 65.0% | |
| TCAGGCTGCTCTCCGAGCCT+TGG | + | chr2_2:764044-764063 | Msa0229150:CDS | 65.0% | |
| CTGCTCTCCGAGCCTTGGCT+CGG | + | chr2_2:764049-764068 | Msa0229150:CDS | 65.0% | |
| GACAGCACCCGCCGAAAGAG+TGG | + | chr2_2:764371-764390 | Msa0229150:CDS | 65.0% | |
| !! | GCACGCCGGCGGATTGAAGC+AGG | + | chr2_2:762255-762274 | Msa0229150:five_prime_UTR | 70.0% |
| CGGAGAGCAGCCTGAGCACC+AGG | - | chr2_2:764039-764058 | None:intergenic | 70.0% | |
| !! | CTCCGAGCCTTGGCTCGGTC+AGG | + | chr2_2:764054-764073 | Msa0229150:CDS | 70.0% |
| GCAGCCTGAGCACCAGGGCC+TGG | - | chr2_2:764033-764052 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_2 | gene | 762112 | 764835 | 762112 | ID=Msa0229150;Name=Msa0229150 |
| chr2_2 | mRNA | 762112 | 764835 | 762112 | ID=Msa0229150-mRNA-1;Parent=Msa0229150;Name=Msa0229150-mRNA-1;_AED=0.03;_eAED=0.03;_QI=184|1|1|1|1|1|6|420|151 |
| chr2_2 | exon | 762112 | 762298 | 762112 | ID=Msa0229150-mRNA-1:exon:192;Parent=Msa0229150-mRNA-1 |
| chr2_2 | exon | 762480 | 762602 | 762480 | ID=Msa0229150-mRNA-1:exon:193;Parent=Msa0229150-mRNA-1 |
| chr2_2 | exon | 762697 | 762742 | 762697 | ID=Msa0229150-mRNA-1:exon:194;Parent=Msa0229150-mRNA-1 |
| chr2_2 | exon | 763747 | 763832 | 763747 | ID=Msa0229150-mRNA-1:exon:195;Parent=Msa0229150-mRNA-1 |
| chr2_2 | exon | 763967 | 764096 | 763967 | ID=Msa0229150-mRNA-1:exon:196;Parent=Msa0229150-mRNA-1 |
| chr2_2 | exon | 764348 | 764835 | 764348 | ID=Msa0229150-mRNA-1:exon:197;Parent=Msa0229150-mRNA-1 |
| chr2_2 | five_prime_UTR | 762112 | 762295 | 762112 | ID=Msa0229150-mRNA-1:five_prime_utr;Parent=Msa0229150-mRNA-1 |
| chr2_2 | CDS | 762296 | 762298 | 762296 | ID=Msa0229150-mRNA-1:cds;Parent=Msa0229150-mRNA-1 |
| chr2_2 | CDS | 762480 | 762602 | 762480 | ID=Msa0229150-mRNA-1:cds;Parent=Msa0229150-mRNA-1 |
| chr2_2 | CDS | 762697 | 762742 | 762697 | ID=Msa0229150-mRNA-1:cds;Parent=Msa0229150-mRNA-1 |
| chr2_2 | CDS | 763747 | 763832 | 763747 | ID=Msa0229150-mRNA-1:cds;Parent=Msa0229150-mRNA-1 |
| chr2_2 | CDS | 763967 | 764096 | 763967 | ID=Msa0229150-mRNA-1:cds;Parent=Msa0229150-mRNA-1 |
| chr2_2 | CDS | 764348 | 764415 | 764348 | ID=Msa0229150-mRNA-1:cds;Parent=Msa0229150-mRNA-1 |
| chr2_2 | three_prime_UTR | 764416 | 764835 | 764416 | ID=Msa0229150-mRNA-1:three_prime_utr;Parent=Msa0229150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
