Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622230 | XP_013450385.1 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 2.83e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622230 | sp|Q9LUQ6|RL192_ARATH | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 7.08e-123 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622230 | I3SA92 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 1.35e-156 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa0622230 | 0.868781 | 5.058740e-66 | -8.615850e-47 |
| Msa0003330 | Msa0622230 | 0.812156 | 4.885709e-51 | -8.615850e-47 |
| Msa0021290 | Msa0622230 | 0.801882 | 7.299171e-49 | -8.615850e-47 |
| Msa0021320 | Msa0622230 | 0.809331 | 1.995064e-50 | -8.615850e-47 |
| Msa0027590 | Msa0622230 | 0.854533 | 1.155610e-61 | -8.615850e-47 |
| Msa0032780 | Msa0622230 | 0.882728 | 8.164718e-71 | -8.615850e-47 |
| Msa0040220 | Msa0622230 | 0.838562 | 2.672140e-57 | -8.615850e-47 |
| Msa0044010 | Msa0622230 | 0.814381 | 1.585791e-51 | -8.615850e-47 |
| Msa0072570 | Msa0622230 | 0.826875 | 2.133656e-54 | -8.615850e-47 |
| Msa0075350 | Msa0622230 | 0.833090 | 6.509562e-56 | -8.615850e-47 |
| Msa0077320 | Msa0622230 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa0087910 | Msa0622230 | 0.856490 | 3.106175e-62 | -8.615850e-47 |
| Msa0089540 | Msa0622230 | 0.848305 | 6.672100e-60 | -8.615850e-47 |
| Msa0114570 | Msa0622230 | 0.814273 | 1.675646e-51 | -8.615850e-47 |
| Msa0114600 | Msa0622230 | 0.888314 | 6.590346e-73 | -8.615850e-47 |
| Msa0602900 | Msa0622230 | 0.821006 | 5.078333e-53 | -8.615850e-47 |
| Msa0605890 | Msa0622230 | 0.845558 | 3.768596e-59 | -8.615850e-47 |
| Msa0622230 | Msa0643960 | 0.831788 | 1.368440e-55 | -8.615850e-47 |
| Msa0622230 | Msa0652160 | 0.831704 | 1.435536e-55 | -8.615850e-47 |
| Msa0622230 | Msa0653060 | 0.800586 | 1.344256e-48 | -8.615850e-47 |
| Msa0622230 | Msa0694400 | 0.816515 | 5.315438e-52 | -8.615850e-47 |
| Msa0622230 | Msa0704860 | 0.812356 | 4.417958e-51 | -8.615850e-47 |
| Msa0622230 | Msa0705800 | 0.823597 | 1.271642e-53 | -8.615850e-47 |
| Msa0622230 | Msa0708630 | 0.831913 | 1.274827e-55 | -8.615850e-47 |
| Msa0622230 | Msa0745970 | 0.832505 | 9.099238e-56 | -8.615850e-47 |
| Msa0622230 | Msa0748350 | 0.987735 | 2.409057e-171 | -8.615850e-47 |
| Msa0622230 | Msa0781080 | 0.809162 | 2.168390e-50 | -8.615850e-47 |
| Msa0622230 | Msa0788380 | 0.824661 | 7.152745e-54 | -8.615850e-47 |
| Msa0622230 | Msa0790450 | 0.815061 | 1.120960e-51 | -8.615850e-47 |
| Msa0622230 | Msa0822580 | 0.814806 | 1.277316e-51 | -8.615850e-47 |
| Msa0622230 | Msa0861320 | 0.849722 | 2.695008e-60 | -8.615850e-47 |
| Msa0622230 | Msa0929700 | 0.896219 | 4.548435e-76 | -8.615850e-47 |
| Msa0622230 | Msa1019090 | 0.802996 | 4.303892e-49 | -8.615850e-47 |
| Msa0622230 | Msa1037290 | 0.828687 | 7.825521e-55 | -8.615850e-47 |
| Msa0622230 | Msa1040160 | 0.819257 | 1.277379e-52 | -8.615850e-47 |
| Msa0622230 | Msa1040170 | -0.827972 | 1.164303e-54 | -8.615850e-47 |
| Msa0622230 | Msa1041680 | 0.805604 | 1.231988e-49 | -8.615850e-47 |
| Msa0622230 | Msa1047020 | 0.813529 | 2.444843e-51 | -8.615850e-47 |
| Msa0622230 | Msa1050100 | 0.867444 | 1.362462e-65 | -8.615850e-47 |
| Msa0622230 | Msa1078980 | 0.800654 | 1.302006e-48 | -8.615850e-47 |
| Msa0622230 | Msa1082170 | 0.830378 | 3.038294e-55 | -8.615850e-47 |
| Msa0622230 | Msa1083360 | -0.833587 | 4.896264e-56 | -8.615850e-47 |
| Msa0622230 | Msa1083370 | 0.844030 | 9.728664e-59 | -8.615850e-47 |
| Msa0622230 | Msa1096900 | 0.811642 | 6.321784e-51 | -8.615850e-47 |
| Msa0622230 | Msa1126520 | 0.811416 | 7.076687e-51 | -8.615850e-47 |
| Msa0622230 | Msa1131030 | 0.848570 | 5.632858e-60 | -8.615850e-47 |
| Msa0622230 | Msa1164150 | 0.853917 | 1.740325e-61 | -8.615850e-47 |
| Msa0622230 | Msa1165640 | 0.999021 | 2.187875e-286 | -8.615850e-47 |
| Msa0622230 | Msa1166570 | 0.802025 | 6.823855e-49 | -8.615850e-47 |
| Msa0622230 | Msa1166670 | 0.842285 | 2.839759e-58 | -8.615850e-47 |
| Msa0622230 | Msa1186030 | 0.838305 | 3.112675e-57 | -8.615850e-47 |
| Msa0622230 | Msa1203560 | 0.802803 | 4.717563e-49 | -8.615850e-47 |
| Msa0622230 | Msa1206240 | 0.834049 | 3.752202e-56 | -8.615850e-47 |
| Msa0622230 | Msa1218170 | 0.803915 | 2.775267e-49 | -8.615850e-47 |
| Msa0622230 | Msa1220580 | 0.802414 | 5.674668e-49 | -8.615850e-47 |
| Msa0622230 | Msa1240270 | 0.806797 | 6.909418e-50 | -8.615850e-47 |
| Msa0622230 | Msa1311400 | 0.835883 | 1.294848e-56 | -8.615850e-47 |
| Msa0622230 | Msa1341780 | 0.808127 | 3.608232e-50 | -8.615850e-47 |
| Msa0622230 | Msa1351020 | 0.825631 | 4.219735e-54 | -8.615850e-47 |
| Msa0622230 | Msa1351920 | -0.816944 | 4.258268e-52 | -8.615850e-47 |
| Msa0622230 | Msa1362210 | 0.874660 | 5.676663e-68 | -8.615850e-47 |
| Msa0622230 | Msa1363910 | 0.807882 | 4.067181e-50 | -8.615850e-47 |
| Msa0622230 | Msa1368920 | 0.829792 | 4.221942e-55 | -8.615850e-47 |
| Msa0622230 | Msa1385480 | 0.807513 | 4.871769e-50 | -8.615850e-47 |
| Msa0622230 | Msa1418770 | 0.837752 | 4.318780e-57 | -8.615850e-47 |
| Msa0622230 | Msa1425070 | 0.848963 | 4.382654e-60 | -8.615850e-47 |
| Msa0622230 | Msa1432310 | 0.806265 | 8.945009e-50 | -8.615850e-47 |
| Msa0622230 | Msa1446410 | 0.872971 | 2.109509e-67 | -8.615850e-47 |
| Msa0622230 | Msa1449160 | 0.846442 | 2.166553e-59 | -8.615850e-47 |
| Msa0622230 | Msa1450560 | 0.816347 | 5.794725e-52 | -8.615850e-47 |
| Msa0132460 | Msa0622230 | 0.831828 | 1.337461e-55 | -8.615850e-47 |
| Msa0134580 | Msa0622230 | 0.882069 | 1.418145e-70 | -8.615850e-47 |
| Msa0167860 | Msa0622230 | 0.835238 | 1.885175e-56 | -8.615850e-47 |
| Msa0172900 | Msa0622230 | 0.804220 | 2.398340e-49 | -8.615850e-47 |
| Msa0182050 | Msa0622230 | 0.830749 | 2.464337e-55 | -8.615850e-47 |
| Msa0182100 | Msa0622230 | 0.804622 | 1.977767e-49 | -8.615850e-47 |
| Msa0191450 | Msa0622230 | 0.830006 | 3.744027e-55 | -8.615850e-47 |
| Msa0191550 | Msa0622230 | 0.843579 | 1.284595e-58 | -8.615850e-47 |
| Msa0192050 | Msa0622230 | 0.838656 | 2.526180e-57 | -8.615850e-47 |
| Msa0192300 | Msa0622230 | 0.820661 | 6.096637e-53 | -8.615850e-47 |
| Msa0192750 | Msa0622230 | 0.807818 | 4.197115e-50 | -8.615850e-47 |
| Msa0194940 | Msa0622230 | 0.856725 | 2.648465e-62 | -8.615850e-47 |
| Msa0195030 | Msa0622230 | 0.814694 | 1.352486e-51 | -8.615850e-47 |
| Msa0210330 | Msa0622230 | 0.822736 | 2.019342e-53 | -8.615850e-47 |
| Msa0222730 | Msa0622230 | 0.822705 | 2.053296e-53 | -8.615850e-47 |
| Msa0229150 | Msa0622230 | 0.843437 | 1.402132e-58 | -8.615850e-47 |
| Msa0235050 | Msa0622230 | 0.835321 | 1.796232e-56 | -8.615850e-47 |
| Msa0237180 | Msa0622230 | 0.807962 | 3.912149e-50 | -8.615850e-47 |
| Msa0371490 | Msa0622230 | 0.837203 | 5.971569e-57 | -8.615850e-47 |
| Msa0376830 | Msa0622230 | 0.819938 | 8.929114e-53 | -8.615850e-47 |
| Msa0377370 | Msa0622230 | 0.814728 | 1.329231e-51 | -8.615850e-47 |
| Msa0377520 | Msa0622230 | 0.826422 | 2.737226e-54 | -8.615850e-47 |
| Msa0388250 | Msa0622230 | 0.808610 | 2.845431e-50 | -8.615850e-47 |
| Msa0419710 | Msa0622230 | 0.816906 | 4.342260e-52 | -8.615850e-47 |
| Msa0426090 | Msa0622230 | 0.829027 | 6.474544e-55 | -8.615850e-47 |
| Msa0426250 | Msa0622230 | 0.830063 | 3.626738e-55 | -8.615850e-47 |
| Msa0430130 | Msa0622230 | 0.804326 | 2.279713e-49 | -8.615850e-47 |
| Msa0438960 | Msa0622230 | 0.826821 | 2.198627e-54 | -8.615850e-47 |
| Msa0450150 | Msa0622230 | 0.824403 | 8.227205e-54 | -8.615850e-47 |
| Msa0472480 | Msa0622230 | 0.825990 | 3.468136e-54 | -8.615850e-47 |
| Msa0475810 | Msa0622230 | 0.829103 | 6.207186e-55 | -8.615850e-47 |
| Msa0481520 | Msa0622230 | 0.865868 | 4.321464e-65 | -8.615850e-47 |
| Msa0277600 | Msa0622230 | 0.847982 | 8.190111e-60 | -8.615850e-47 |
| Msa0281330 | Msa0622230 | 0.859426 | 4.171372e-63 | -8.615850e-47 |
| Msa0281370 | Msa0622230 | 0.863195 | 2.959737e-64 | -8.615850e-47 |
| Msa0297830 | Msa0622230 | 0.803919 | 2.770254e-49 | -8.615850e-47 |
| Msa0301220 | Msa0622230 | 0.831904 | 1.281233e-55 | -8.615850e-47 |
| Msa0301250 | Msa0622230 | 0.819502 | 1.122903e-52 | -8.615850e-47 |
| Msa0312210 | Msa0622230 | 0.827482 | 1.526796e-54 | -8.615850e-47 |
| Msa0313060 | Msa0622230 | 0.850268 | 1.894926e-60 | -8.615850e-47 |
| Msa0313520 | Msa0622230 | 0.835715 | 1.427786e-56 | -8.615850e-47 |
| Msa0315430 | Msa0622230 | 0.849324 | 3.479809e-60 | -8.615850e-47 |
| Msa0315660 | Msa0622230 | 0.814738 | 1.322417e-51 | -8.615850e-47 |
| Msa0335840 | Msa0622230 | 0.814065 | 1.862355e-51 | -8.615850e-47 |
| Msa0340560 | Msa0622230 | 0.800213 | 1.601822e-48 | -8.615850e-47 |
| Msa0342860 | Msa0622230 | -0.826319 | 2.895325e-54 | -8.615850e-47 |
| Msa0517480 | Msa0622230 | 0.839525 | 1.504148e-57 | -8.615850e-47 |
| Msa0529900 | Msa0622230 | 0.875436 | 3.086343e-68 | -8.615850e-47 |
| Msa0540480 | Msa0622230 | 0.802589 | 5.222218e-49 | -8.615850e-47 |
| Msa0547920 | Msa0622230 | 0.839753 | 1.312202e-57 | -8.615850e-47 |
| Msa0550420 | Msa0622230 | 0.819443 | 1.158356e-52 | -8.615850e-47 |
| Msa0573550 | Msa0622230 | 0.884209 | 2.330679e-71 | -8.615850e-47 |
| Msa0582070 | Msa0622230 | 0.836951 | 6.925756e-57 | -8.615850e-47 |
| Msa0591050 | Msa0622230 | 0.806867 | 6.676275e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622230 | MtrunA17_Chr7g0269621 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 2.60e-160 | 441 |
| Msa0622230 | MtrunA17_Chr1g0195141 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 4.82e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622230 | AT3G16780.1 | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 7.20e-124 | 349 |
| Msa0622230 | AT1G02780.1 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 1.70e-116 | 331 |
| Msa0622230 | AT4G02230.1 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 2.57e-115 | 328 |
| Msa0622230 | AT4G16030.1 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 1.02e-17 | 76.3 |
Find 79 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 4_2:+74590798 | None:intergenic |
| ATAATAGTCCCTGTTCTAAA+TGG | 0.256274 | 4_2:-74590290 | Msa0622230:three_prime_UTR |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 4_2:+74591898 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 4_2:+74590855 | None:intergenic |
| CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 4_2:+74590954 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 4_2:+74592027 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 4_2:+74590807 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 4_2:+74590542 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 4_2:+74591038 | None:intergenic |
| AGATTGCTTGGCTGAATTGT+TGG | 0.341299 | 4_2:-74590410 | Msa0622230:three_prime_UTR |
| GATTGCTTGGCTGAATTGTT+GGG | 0.356970 | 4_2:-74590409 | Msa0622230:three_prime_UTR |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 4_2:-74590622 | Msa0622230:intron |
| TTAAGGATGGGTTTATAATC+AGG | 0.382568 | 4_2:-74591878 | Msa0622230:CDS |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 4_2:-74591798 | Msa0622230:intron |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 4_2:-74592056 | Msa0622230:CDS |
| CGCTGCAGTCTGAGATTGCT+TGG | 0.398433 | 4_2:-74590422 | Msa0622230:exon |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 4_2:+74590565 | None:intergenic |
| AGCAAAACACCATTTAGAAC+AGG | 0.406056 | 4_2:+74590281 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 4_2:-74590926 | Msa0622230:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 4_2:-74591068 | Msa0622230:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 4_2:-74591895 | Msa0622230:CDS |
| TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 4_2:+74590962 | None:intergenic |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 4_2:-74590981 | Msa0622230:CDS |
| GACCTTGTCTGACCAGTTTG+AGG | 0.454488 | 4_2:-74590830 | Msa0622230:CDS |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 4_2:+74590604 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 4_2:-74592066 | Msa0622230:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.472398 | 4_2:+74591848 | None:intergenic |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 4_2:-74590893 | Msa0622230:CDS |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.475046 | 4_2:+74590818 | None:intergenic |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 4_2:+74590786 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 4_2:+74590543 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 4_2:-74590925 | Msa0622230:CDS |
| GACTGTGTGAGCAGCAGCTA+AGG | 0.489602 | 4_2:+74592143 | None:intergenic |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 4_2:+74590782 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 4_2:+74590547 | None:intergenic |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 4_2:-74591804 | Msa0622230:CDS |
| TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 4_2:+74590971 | None:intergenic |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 4_2:+74590589 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 4_2:-74590980 | Msa0622230:CDS |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 4_2:+74591836 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 4_2:-74591891 | Msa0622230:CDS |
| CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 4_2:+74591010 | None:intergenic |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 4_2:-74590783 | Msa0622230:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 4_2:-74590863 | Msa0622230:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 4_2:-74591832 | Msa0622230:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 4_2:-74591816 | Msa0622230:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 4_2:-74591064 | Msa0622230:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 4_2:-74591890 | Msa0622230:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 4_2:-74591821 | Msa0622230:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 4_2:+74590577 | None:intergenic |
| ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 4_2:-74590446 | Msa0622230:CDS |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 4_2:-74590779 | Msa0622230:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 4_2:-74590795 | Msa0622230:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 4_2:-74591901 | Msa0622230:CDS |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 4_2:+74592076 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 4_2:+74592104 | None:intergenic |
| TGAGCAGCAGCTAAGGCAAA+TGG | 0.590673 | 4_2:+74592150 | None:intergenic |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 4_2:-74590809 | Msa0622230:CDS |
| GGCCTCAAACTGGTCAGACA+AGG | 0.594906 | 4_2:+74590828 | None:intergenic |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 4_2:+74590929 | None:intergenic |
| GACCTGGAGTGAATCTTGGT+GGG | 0.604962 | 4_2:+74591852 | None:intergenic |
| CTACTTTAGAACAGCAACTG+AGG | 0.612176 | 4_2:+74590379 | None:intergenic |
| AACCCACCAAGATTCACTCC+AGG | 0.614800 | 4_2:-74591854 | Msa0622230:CDS |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 4_2:-74592022 | Msa0622230:CDS |
| AGACCTGGAGTGAATCTTGG+TGG | 0.619616 | 4_2:+74591851 | None:intergenic |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 4_2:+74592068 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 4_2:-74590780 | Msa0622230:CDS |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 4_2:-74592072 | Msa0622230:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 4_2:-74590619 | Msa0622230:intron |
| CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 4_2:+74590423 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 4_2:+74592005 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 4_2:-74590932 | Msa0622230:CDS |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 4_2:-74590776 | Msa0622230:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 4_2:-74591047 | Msa0622230:CDS |
| CAGAAACAAGCAATCAACCA+TGG | 0.677132 | 4_2:-74592121 | Msa0622230:exon |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 4_2:-74591052 | Msa0622230:CDS |
| GCAAAACACCATTTAGAACA+GGG | 0.681819 | 4_2:+74590282 | None:intergenic |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 4_2:-74591063 | Msa0622230:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 4_2:-74590977 | Msa0622230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTATAAACAAACAAAA+TGG | + | chr4_2:74590706-74590725 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr4_2:74591676-74591695 | Msa0622230:intron | 10.0% |
| !! | ATAATTATAAACAAACAAAA+TGG | + | chr4_2:74590706-74590725 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr4_2:74591676-74591695 | Msa0622230:intron | 10.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr4_2:74590603-74590622 | Msa0622230:CDS | 15.0% |
| !! | ATATATTTCAGTTTACAAAA+TGG | - | chr4_2:74591014-74591033 | Msa0622230:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr4_2:74591049-74591068 | Msa0622230:CDS | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr4_2:74591709-74591728 | Msa0622230:intron | 15.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr4_2:74591803-74591822 | None:intergenic | 15.0% |
| !!! | ATGTTTTTATACTTTTCTAA+TGG | - | chr4_2:74592130-74592149 | Msa0622230:five_prime_UTR | 15.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr4_2:74590603-74590622 | Msa0622230:CDS | 15.0% |
| !! | ATATATTTCAGTTTACAAAA+TGG | - | chr4_2:74591014-74591033 | Msa0622230:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr4_2:74591049-74591068 | Msa0622230:CDS | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr4_2:74591709-74591728 | Msa0622230:intron | 15.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr4_2:74591803-74591822 | None:intergenic | 15.0% |
| !!! | ATGTTTTTATACTTTTCTAA+TGG | - | chr4_2:74592130-74592149 | Msa0622230:five_prime_UTR | 15.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr4_2:74590416-74590435 | Msa0622230:exon | 20.0% |
| !!! | TGAAATATATTTTGTTGTGA+CGG | + | chr4_2:74591004-74591023 | None:intergenic | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | + | chr4_2:74591160-74591179 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr4_2:74591610-74591629 | None:intergenic | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr4_2:74591710-74591729 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr4_2:74591708-74591727 | Msa0622230:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr4_2:74591804-74591823 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTCAGTTATC+AGG | - | chr4_2:74592013-74592032 | Msa0622230:CDS | 20.0% |
| !!! | TTTTTGTTATGATTTTGTTG+CGG | - | chr4_2:74592080-74592099 | Msa0622230:CDS | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr4_2:74590416-74590435 | Msa0622230:exon | 20.0% |
| !!! | TGAAATATATTTTGTTGTGA+CGG | + | chr4_2:74591004-74591023 | None:intergenic | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | + | chr4_2:74591160-74591179 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr4_2:74591610-74591629 | None:intergenic | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr4_2:74591710-74591729 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr4_2:74591708-74591727 | Msa0622230:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr4_2:74591804-74591823 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTCAGTTATC+AGG | - | chr4_2:74592013-74592032 | Msa0622230:CDS | 20.0% |
| !!! | TTTTTGTTATGATTTTGTTG+CGG | - | chr4_2:74592080-74592099 | Msa0622230:CDS | 20.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr4_2:74590585-74590604 | None:intergenic | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr4_2:74591180-74591199 | Msa0622230:intron | 25.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr4_2:74591634-74591653 | Msa0622230:intron | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr4_2:74590585-74590604 | None:intergenic | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr4_2:74591180-74591199 | Msa0622230:intron | 25.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr4_2:74591634-74591653 | Msa0622230:intron | 25.0% |
| GAGATTTCGTTAACTTCATT+TGG | + | chr4_2:74590313-74590332 | None:intergenic | 30.0% | |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr4_2:74590429-74590448 | Msa0622230:exon | 30.0% |
| ! | TTAAGGATGGGTTTATAATC+AGG | - | chr4_2:74590459-74590478 | Msa0622230:intron | 30.0% |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr4_2:74590926-74590945 | None:intergenic | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | + | chr4_2:74590973-74590992 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | + | chr4_2:74590983-74591002 | None:intergenic | 30.0% |
| AAAAACTGTCAACAATTCCA+AGG | + | chr4_2:74591075-74591094 | None:intergenic | 30.0% | |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr4_2:74591444-74591463 | Msa0622230:intron | 30.0% |
| TTAAACAATCATGCATAGCA+GGG | + | chr4_2:74591852-74591871 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr4_2:74591853-74591872 | None:intergenic | 30.0% | |
| ! | ATAATAGTCCCTGTTCTAAA+TGG | - | chr4_2:74592047-74592066 | Msa0622230:CDS | 30.0% |
| GAGATTTCGTTAACTTCATT+TGG | + | chr4_2:74590313-74590332 | None:intergenic | 30.0% | |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr4_2:74590429-74590448 | Msa0622230:exon | 30.0% |
| ! | TTAAGGATGGGTTTATAATC+AGG | - | chr4_2:74590459-74590478 | Msa0622230:intron | 30.0% |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr4_2:74590926-74590945 | None:intergenic | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | + | chr4_2:74590973-74590992 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | + | chr4_2:74590983-74591002 | None:intergenic | 30.0% |
| AAAAACTGTCAACAATTCCA+AGG | + | chr4_2:74591075-74591094 | None:intergenic | 30.0% | |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr4_2:74591444-74591463 | Msa0622230:intron | 30.0% |
| TTAAACAATCATGCATAGCA+GGG | + | chr4_2:74591852-74591871 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr4_2:74591853-74591872 | None:intergenic | 30.0% | |
| ! | ATAATAGTCCCTGTTCTAAA+TGG | - | chr4_2:74592047-74592066 | Msa0622230:CDS | 30.0% |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr4_2:74590315-74590334 | Msa0622230:three_prime_UTR | 35.0% | |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr4_2:74590442-74590461 | None:intergenic | 35.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr4_2:74590442-74590461 | Msa0622230:CDS | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr4_2:74590579-74590598 | None:intergenic | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr4_2:74590580-74590599 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | - | chr4_2:74591055-74591074 | Msa0622230:CDS | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr4_2:74591126-74591145 | Msa0622230:intron | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr4_2:74591185-74591204 | Msa0622230:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr4_2:74591262-74591281 | Msa0622230:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr4_2:74591269-74591288 | Msa0622230:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | + | chr4_2:74591319-74591338 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | + | chr4_2:74591320-74591339 | None:intergenic | 35.0% |
| TAACCTTCATGTACATGTCA+TGG | + | chr4_2:74591411-74591430 | None:intergenic | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr4_2:74591411-74591430 | Msa0622230:intron | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr4_2:74591412-74591431 | Msa0622230:intron | 35.0% | |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr4_2:74591715-74591734 | Msa0622230:intron | 35.0% |
| TTATAATACTCACTGGGTCT+GGG | + | chr4_2:74591797-74591816 | None:intergenic | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr4_2:74591798-74591817 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr4_2:74591891-74591910 | Msa0622230:CDS | 35.0% | |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr4_2:74591895-74591914 | None:intergenic | 35.0% |
| !! | GTTTTGACGAGTCTTTTTGT+TGG | - | chr4_2:74591980-74591999 | Msa0622230:intron | 35.0% |
| ! | GCAAAACACCATTTAGAACA+GGG | + | chr4_2:74592058-74592077 | None:intergenic | 35.0% |
| ! | AGCAAAACACCATTTAGAAC+AGG | + | chr4_2:74592059-74592078 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCGGAAACACTT+TGG | - | chr4_2:74592091-74592110 | Msa0622230:CDS | 35.0% |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr4_2:74590315-74590334 | Msa0622230:three_prime_UTR | 35.0% | |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr4_2:74590442-74590461 | None:intergenic | 35.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr4_2:74590442-74590461 | Msa0622230:CDS | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr4_2:74590579-74590598 | None:intergenic | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr4_2:74590580-74590599 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | - | chr4_2:74591055-74591074 | Msa0622230:CDS | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr4_2:74591126-74591145 | Msa0622230:intron | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr4_2:74591185-74591204 | Msa0622230:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr4_2:74591262-74591281 | Msa0622230:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr4_2:74591269-74591288 | Msa0622230:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | + | chr4_2:74591319-74591338 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | + | chr4_2:74591320-74591339 | None:intergenic | 35.0% |
| TAACCTTCATGTACATGTCA+TGG | + | chr4_2:74591411-74591430 | None:intergenic | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr4_2:74591411-74591430 | Msa0622230:intron | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr4_2:74591412-74591431 | Msa0622230:intron | 35.0% | |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr4_2:74591715-74591734 | Msa0622230:intron | 35.0% |
| TTATAATACTCACTGGGTCT+GGG | + | chr4_2:74591797-74591816 | None:intergenic | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr4_2:74591798-74591817 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr4_2:74591891-74591910 | Msa0622230:CDS | 35.0% | |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr4_2:74591895-74591914 | None:intergenic | 35.0% |
| !! | GTTTTGACGAGTCTTTTTGT+TGG | - | chr4_2:74591980-74591999 | Msa0622230:intron | 35.0% |
| ! | GCAAAACACCATTTAGAACA+GGG | + | chr4_2:74592058-74592077 | None:intergenic | 35.0% |
| ! | AGCAAAACACCATTTAGAAC+AGG | + | chr4_2:74592059-74592078 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCGGAAACACTT+TGG | - | chr4_2:74592091-74592110 | Msa0622230:CDS | 35.0% |
| CAGAAACAAGCAATCAACCA+TGG | - | chr4_2:74590216-74590235 | Msa0622230:three_prime_UTR | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr4_2:74590335-74590354 | None:intergenic | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr4_2:74590446-74590465 | Msa0622230:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr4_2:74590447-74590466 | Msa0622230:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr4_2:74590516-74590535 | Msa0622230:intron | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr4_2:74590521-74590540 | Msa0622230:intron | 40.0% | |
| AAAGGAAGACACTCTGGATA+TGG | - | chr4_2:74590539-74590558 | Msa0622230:intron | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr4_2:74590578-74590597 | None:intergenic | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr4_2:74591224-74591243 | None:intergenic | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr4_2:74591273-74591292 | Msa0622230:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr4_2:74591274-74591293 | Msa0622230:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | + | chr4_2:74591386-74591405 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr4_2:74591405-74591424 | Msa0622230:intron | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr4_2:74591718-74591737 | Msa0622230:intron | 40.0% |
| AGATTGCTTGGCTGAATTGT+TGG | - | chr4_2:74591927-74591946 | Msa0622230:intron | 40.0% | |
| GATTGCTTGGCTGAATTGTT+GGG | - | chr4_2:74591928-74591947 | Msa0622230:intron | 40.0% | |
| !! | CTACTTTAGAACAGCAACTG+AGG | + | chr4_2:74591961-74591980 | None:intergenic | 40.0% |
| CAGAAACAAGCAATCAACCA+TGG | - | chr4_2:74590216-74590235 | Msa0622230:three_prime_UTR | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr4_2:74590335-74590354 | None:intergenic | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr4_2:74590446-74590465 | Msa0622230:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr4_2:74590447-74590466 | Msa0622230:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr4_2:74590516-74590535 | Msa0622230:intron | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr4_2:74590521-74590540 | Msa0622230:intron | 40.0% | |
| AAAGGAAGACACTCTGGATA+TGG | - | chr4_2:74590539-74590558 | Msa0622230:intron | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr4_2:74590578-74590597 | None:intergenic | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr4_2:74591224-74591243 | None:intergenic | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr4_2:74591273-74591292 | Msa0622230:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr4_2:74591274-74591293 | Msa0622230:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | + | chr4_2:74591386-74591405 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr4_2:74591405-74591424 | Msa0622230:intron | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr4_2:74591718-74591737 | Msa0622230:intron | 40.0% |
| AGATTGCTTGGCTGAATTGT+TGG | - | chr4_2:74591927-74591946 | Msa0622230:intron | 40.0% | |
| GATTGCTTGGCTGAATTGTT+GGG | - | chr4_2:74591928-74591947 | Msa0622230:intron | 40.0% | |
| !! | CTACTTTAGAACAGCAACTG+AGG | + | chr4_2:74591961-74591980 | None:intergenic | 40.0% |
| TTGCAATTTGAGGGAGACCA+TGG | + | chr4_2:74590236-74590255 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr4_2:74590245-74590264 | None:intergenic | 45.0% |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr4_2:74590436-74590455 | Msa0622230:CDS | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr4_2:74590533-74590552 | Msa0622230:intron | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr4_2:74590543-74590562 | Msa0622230:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | - | chr4_2:74591311-74591330 | Msa0622230:intron | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | + | chr4_2:74591330-74591349 | None:intergenic | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr4_2:74591474-74591493 | Msa0622230:intron | 45.0% | |
| AACAATCATGCATAGCAGGG+CGG | + | chr4_2:74591849-74591868 | None:intergenic | 45.0% | |
| TTGCAATTTGAGGGAGACCA+TGG | + | chr4_2:74590236-74590255 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr4_2:74590245-74590264 | None:intergenic | 45.0% |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr4_2:74590436-74590455 | Msa0622230:CDS | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr4_2:74590533-74590552 | Msa0622230:intron | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr4_2:74590543-74590562 | Msa0622230:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | - | chr4_2:74591311-74591330 | Msa0622230:intron | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | + | chr4_2:74591330-74591349 | None:intergenic | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr4_2:74591474-74591493 | Msa0622230:intron | 45.0% | |
| AACAATCATGCATAGCAGGG+CGG | + | chr4_2:74591849-74591868 | None:intergenic | 45.0% | |
| !!! | AATAAATTTTATTTTAAGAT+CGG | + | chr4_2:74590754-74590773 | None:intergenic | 5.0% |
| !!! | AATAAATTTTATTTTAAGAT+CGG | + | chr4_2:74590754-74590773 | None:intergenic | 5.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr4_2:74590246-74590265 | None:intergenic | 50.0% |
| AACCCACCAAGATTCACTCC+AGG | - | chr4_2:74590483-74590502 | Msa0622230:intron | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | + | chr4_2:74590488-74590507 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | + | chr4_2:74590489-74590508 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr4_2:74590492-74590511 | None:intergenic | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr4_2:74590505-74590524 | Msa0622230:intron | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | - | chr4_2:74591207-74591226 | Msa0622230:intron | 50.0% | |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr4_2:74591285-74591304 | Msa0622230:intron | 50.0% |
| TGTCAATCTTCTTGGCCTCC+CGG | + | chr4_2:74591378-74591397 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr4_2:74591485-74591504 | None:intergenic | 50.0% |
| GACCTTGTCTGACCAGTTTG+AGG | - | chr4_2:74591507-74591526 | Msa0622230:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr4_2:74591558-74591577 | None:intergenic | 50.0% | |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr4_2:74591558-74591577 | Msa0622230:intron | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr4_2:74591775-74591794 | None:intergenic | 50.0% |
| AATACTCACTGGGTCTGGGT+TGG | + | chr4_2:74591793-74591812 | None:intergenic | 50.0% | |
| CAAGCAATCTCAGACTGCAG+CGG | + | chr4_2:74591917-74591936 | None:intergenic | 50.0% | |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr4_2:74590246-74590265 | None:intergenic | 50.0% |
| AACCCACCAAGATTCACTCC+AGG | - | chr4_2:74590483-74590502 | Msa0622230:intron | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | + | chr4_2:74590488-74590507 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | + | chr4_2:74590489-74590508 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr4_2:74590492-74590511 | None:intergenic | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr4_2:74590505-74590524 | Msa0622230:intron | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | - | chr4_2:74591207-74591226 | Msa0622230:intron | 50.0% | |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr4_2:74591285-74591304 | Msa0622230:intron | 50.0% |
| TGTCAATCTTCTTGGCCTCC+CGG | + | chr4_2:74591378-74591397 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr4_2:74591485-74591504 | None:intergenic | 50.0% |
| GACCTTGTCTGACCAGTTTG+AGG | - | chr4_2:74591507-74591526 | Msa0622230:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr4_2:74591558-74591577 | None:intergenic | 50.0% | |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr4_2:74591558-74591577 | Msa0622230:intron | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr4_2:74591775-74591794 | None:intergenic | 50.0% |
| AATACTCACTGGGTCTGGGT+TGG | + | chr4_2:74591793-74591812 | None:intergenic | 50.0% | |
| CAAGCAATCTCAGACTGCAG+CGG | + | chr4_2:74591917-74591936 | None:intergenic | 50.0% | |
| GACTGTGTGAGCAGCAGCTA+AGG | + | chr4_2:74590197-74590216 | None:intergenic | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr4_2:74590264-74590283 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr4_2:74590265-74590284 | Msa0622230:three_prime_UTR | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr4_2:74590281-74590300 | Msa0622230:three_prime_UTR | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr4_2:74590504-74590523 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr4_2:74591356-74591375 | Msa0622230:intron | 55.0% | |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr4_2:74591357-74591376 | Msa0622230:intron | 55.0% | |
| GGCCTCAAACTGGTCAGACA+AGG | + | chr4_2:74591512-74591531 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr4_2:74591522-74591541 | None:intergenic | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr4_2:74591528-74591547 | Msa0622230:intron | 55.0% | |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr4_2:74591533-74591552 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr4_2:74591557-74591576 | Msa0622230:intron | 55.0% |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr4_2:74591845-74591864 | None:intergenic | 55.0% | |
| ! | CGCTGCAGTCTGAGATTGCT+TGG | - | chr4_2:74591915-74591934 | Msa0622230:intron | 55.0% |
| GACTGTGTGAGCAGCAGCTA+AGG | + | chr4_2:74590197-74590216 | None:intergenic | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr4_2:74590264-74590283 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr4_2:74590265-74590284 | Msa0622230:three_prime_UTR | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr4_2:74590281-74590300 | Msa0622230:three_prime_UTR | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr4_2:74590504-74590523 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr4_2:74591356-74591375 | Msa0622230:intron | 55.0% | |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr4_2:74591357-74591376 | Msa0622230:intron | 55.0% | |
| GGCCTCAAACTGGTCAGACA+AGG | + | chr4_2:74591512-74591531 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr4_2:74591522-74591541 | None:intergenic | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr4_2:74591528-74591547 | Msa0622230:intron | 55.0% | |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr4_2:74591533-74591552 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr4_2:74591557-74591576 | Msa0622230:intron | 55.0% |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr4_2:74591845-74591864 | None:intergenic | 55.0% | |
| ! | CGCTGCAGTCTGAGATTGCT+TGG | - | chr4_2:74591915-74591934 | Msa0622230:intron | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | + | chr4_2:74590272-74590291 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr4_2:74590271-74590290 | Msa0622230:three_prime_UTR | 60.0% | |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr4_2:74591290-74591309 | Msa0622230:intron | 60.0% |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr4_2:74591302-74591321 | None:intergenic | 60.0% | |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr4_2:74591360-74591379 | Msa0622230:intron | 60.0% |
| TCTTGGCCTCCCGGTACTTG+CGG | + | chr4_2:74591369-74591388 | None:intergenic | 60.0% | |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr4_2:74591542-74591561 | None:intergenic | 60.0% |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr4_2:74591542-74591561 | Msa0622230:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr4_2:74591554-74591573 | None:intergenic | 60.0% | |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr4_2:74591554-74591573 | Msa0622230:intron | 60.0% |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr4_2:74591561-74591580 | Msa0622230:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr4_2:74591736-74591755 | None:intergenic | 60.0% |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr4_2:74591751-74591770 | None:intergenic | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr4_2:74591763-74591782 | None:intergenic | 60.0% | |
| ACGACCGCACTTGAGAACGC+TGG | + | chr4_2:74590272-74590291 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr4_2:74590271-74590290 | Msa0622230:three_prime_UTR | 60.0% | |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr4_2:74591290-74591309 | Msa0622230:intron | 60.0% |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr4_2:74591302-74591321 | None:intergenic | 60.0% | |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr4_2:74591360-74591379 | Msa0622230:intron | 60.0% |
| TCTTGGCCTCCCGGTACTTG+CGG | + | chr4_2:74591369-74591388 | None:intergenic | 60.0% | |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr4_2:74591542-74591561 | None:intergenic | 60.0% |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr4_2:74591542-74591561 | Msa0622230:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr4_2:74591554-74591573 | None:intergenic | 60.0% | |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr4_2:74591554-74591573 | Msa0622230:intron | 60.0% |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr4_2:74591561-74591580 | Msa0622230:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr4_2:74591736-74591755 | None:intergenic | 60.0% |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr4_2:74591751-74591770 | None:intergenic | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr4_2:74591763-74591782 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 74590189 | 74592170 | 74590189 | ID=Msa0622230;Name=Msa0622230 |
| chr4_2 | mRNA | 74590189 | 74592170 | 74590189 | ID=Msa0622230-mRNA-1;Parent=Msa0622230;Name=Msa0622230-mRNA-1;_AED=0.10;_eAED=0.10;_QI=46|1|1|1|1|1|5|243|219 |
| chr4_2 | exon | 74590189 | 74590468 | 74590189 | ID=Msa0622230-mRNA-1:exon:22572;Parent=Msa0622230-mRNA-1 |
| chr4_2 | exon | 74590556 | 74590629 | 74590556 | ID=Msa0622230-mRNA-1:exon:22571;Parent=Msa0622230-mRNA-1 |
| chr4_2 | exon | 74590762 | 74591075 | 74590762 | ID=Msa0622230-mRNA-1:exon:22570;Parent=Msa0622230-mRNA-1 |
| chr4_2 | exon | 74591799 | 74591921 | 74591799 | ID=Msa0622230-mRNA-1:exon:22569;Parent=Msa0622230-mRNA-1 |
| chr4_2 | exon | 74592013 | 74592170 | 74592013 | ID=Msa0622230-mRNA-1:exon:22568;Parent=Msa0622230-mRNA-1 |
| chr4_2 | five_prime_UTR | 74592125 | 74592170 | 74592125 | ID=Msa0622230-mRNA-1:five_prime_utr;Parent=Msa0622230-mRNA-1 |
| chr4_2 | CDS | 74592013 | 74592124 | 74592013 | ID=Msa0622230-mRNA-1:cds;Parent=Msa0622230-mRNA-1 |
| chr4_2 | CDS | 74591799 | 74591921 | 74591799 | ID=Msa0622230-mRNA-1:cds;Parent=Msa0622230-mRNA-1 |
| chr4_2 | CDS | 74590762 | 74591075 | 74590762 | ID=Msa0622230-mRNA-1:cds;Parent=Msa0622230-mRNA-1 |
| chr4_2 | CDS | 74590556 | 74590629 | 74590556 | ID=Msa0622230-mRNA-1:cds;Parent=Msa0622230-mRNA-1 |
| chr4_2 | CDS | 74590432 | 74590468 | 74590432 | ID=Msa0622230-mRNA-1:cds;Parent=Msa0622230-mRNA-1 |
| chr4_2 | three_prime_UTR | 74590189 | 74590431 | 74590189 | ID=Msa0622230-mRNA-1:three_prime_utr;Parent=Msa0622230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
