Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165640 | XP_013450385.1 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 2.83e-156 | 441 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165640 | sp|Q9LUQ6|RL192_ARATH | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 7.08e-123 | 349 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165640 | I3SA92 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 1.35e-156 | 441 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001760 | Msa1165640 | 0.869175 | 3.769337e-66 | -8.615850e-47 |
| Msa0003330 | Msa1165640 | 0.816968 | 4.205906e-52 | -8.615850e-47 |
| Msa0021320 | Msa1165640 | 0.803127 | 4.043665e-49 | -8.615850e-47 |
| Msa0027590 | Msa1165640 | 0.859375 | 4.319245e-63 | -8.615850e-47 |
| Msa0032780 | Msa1165640 | 0.883995 | 2.796705e-71 | -8.615850e-47 |
| Msa0040220 | Msa1165640 | 0.838827 | 2.281330e-57 | -8.615850e-47 |
| Msa0044010 | Msa1165640 | 0.809932 | 1.482079e-50 | -8.615850e-47 |
| Msa0072570 | Msa1165640 | 0.825510 | 4.507508e-54 | -8.615850e-47 |
| Msa0075350 | Msa1165640 | 0.838827 | 2.281330e-57 | -8.615850e-47 |
| Msa0077320 | Msa1165640 | 0.800157 | 1.644138e-48 | -8.615850e-47 |
| Msa0087910 | Msa1165640 | 0.857452 | 1.616564e-62 | -8.615850e-47 |
| Msa0089540 | Msa1165640 | 0.840545 | 8.151470e-58 | -8.615850e-47 |
| Msa0114570 | Msa1165640 | 0.815031 | 1.138411e-51 | -8.615850e-47 |
| Msa0114600 | Msa1165640 | 0.883887 | 3.066445e-71 | -8.615850e-47 |
| Msa0602900 | Msa1165640 | 0.818997 | 1.463399e-52 | -8.615850e-47 |
| Msa0605890 | Msa1165640 | 0.843439 | 1.399962e-58 | -8.615850e-47 |
| Msa0622230 | Msa1165640 | 0.999021 | 2.187875e-286 | -8.615850e-47 |
| Msa0643960 | Msa1165640 | 0.829616 | 4.660407e-55 | -8.615850e-47 |
| Msa0652160 | Msa1165640 | 0.829321 | 5.494342e-55 | -8.615850e-47 |
| Msa0653060 | Msa1165640 | 0.802318 | 5.938208e-49 | -8.615850e-47 |
| Msa0694400 | Msa1165640 | 0.819221 | 1.301220e-52 | -8.615850e-47 |
| Msa0704860 | Msa1165640 | 0.811598 | 6.462848e-51 | -8.615850e-47 |
| Msa0705800 | Msa1165640 | 0.829332 | 5.461172e-55 | -8.615850e-47 |
| Msa0708630 | Msa1165640 | 0.829841 | 4.107235e-55 | -8.615850e-47 |
| Msa0745970 | Msa1165640 | 0.831166 | 1.947197e-55 | -8.615850e-47 |
| Msa0748350 | Msa1165640 | 0.988115 | 9.091121e-173 | -8.615850e-47 |
| Msa0781080 | Msa1165640 | 0.815511 | 8.905287e-52 | -8.615850e-47 |
| Msa0788380 | Msa1165640 | 0.829040 | 6.429207e-55 | -8.615850e-47 |
| Msa0790450 | Msa1165640 | 0.808414 | 3.133912e-50 | -8.615850e-47 |
| Msa0822580 | Msa1165640 | 0.820855 | 5.501770e-53 | -8.615850e-47 |
| Msa0132460 | Msa1165640 | 0.829823 | 4.148053e-55 | -8.615850e-47 |
| Msa0134580 | Msa1165640 | 0.883058 | 6.184155e-71 | -8.615850e-47 |
| Msa0167860 | Msa1165640 | 0.836481 | 9.125166e-57 | -8.615850e-47 |
| Msa0172900 | Msa1165640 | 0.803973 | 2.699376e-49 | -8.615850e-47 |
| Msa0182050 | Msa1165640 | 0.829201 | 5.875874e-55 | -8.615850e-47 |
| Msa0182100 | Msa1165640 | 0.802525 | 5.383927e-49 | -8.615850e-47 |
| Msa0191450 | Msa1165640 | 0.833905 | 4.075924e-56 | -8.615850e-47 |
| Msa0191550 | Msa1165640 | 0.845084 | 5.062051e-59 | -8.615850e-47 |
| Msa0192050 | Msa1165640 | 0.831845 | 1.325075e-55 | -8.615850e-47 |
| Msa0192300 | Msa1165640 | 0.818996 | 1.464364e-52 | -8.615850e-47 |
| Msa0192750 | Msa1165640 | 0.810947 | 8.947560e-51 | -8.615850e-47 |
| Msa0194940 | Msa1165640 | 0.858145 | 1.007198e-62 | -8.615850e-47 |
| Msa0195030 | Msa1165640 | 0.808015 | 3.812053e-50 | -8.615850e-47 |
| Msa0210330 | Msa1165640 | 0.826627 | 2.445137e-54 | -8.615850e-47 |
| Msa0210360 | Msa1165640 | 0.800576 | 1.350629e-48 | -8.615850e-47 |
| Msa0222730 | Msa1165640 | 0.827035 | 1.953816e-54 | -8.615850e-47 |
| Msa0229150 | Msa1165640 | 0.848423 | 6.187580e-60 | -8.615850e-47 |
| Msa0235050 | Msa1165640 | 0.835361 | 1.754614e-56 | -8.615850e-47 |
| Msa0371490 | Msa1165640 | 0.835147 | 1.987172e-56 | -8.615850e-47 |
| Msa0376830 | Msa1165640 | 0.820930 | 5.285863e-53 | -8.615850e-47 |
| Msa0377370 | Msa1165640 | 0.809222 | 2.104657e-50 | -8.615850e-47 |
| Msa0377520 | Msa1165640 | 0.824328 | 8.564984e-54 | -8.615850e-47 |
| Msa0419710 | Msa1165640 | 0.812730 | 3.659666e-51 | -8.615850e-47 |
| Msa0426090 | Msa1165640 | 0.829701 | 4.442089e-55 | -8.615850e-47 |
| Msa0426250 | Msa1165640 | 0.829771 | 4.272928e-55 | -8.615850e-47 |
| Msa0438960 | Msa1165640 | 0.829819 | 4.157711e-55 | -8.615850e-47 |
| Msa0450150 | Msa1165640 | 0.820034 | 8.490033e-53 | -8.615850e-47 |
| Msa0472480 | Msa1165640 | 0.826861 | 2.149982e-54 | -8.615850e-47 |
| Msa0475810 | Msa1165640 | 0.829996 | 3.765267e-55 | -8.615850e-47 |
| Msa0481520 | Msa1165640 | 0.872470 | 3.103217e-67 | -8.615850e-47 |
| Msa1037290 | Msa1165640 | 0.833968 | 3.930676e-56 | -8.615850e-47 |
| Msa1040160 | Msa1165640 | 0.821405 | 4.108495e-53 | -8.615850e-47 |
| Msa1040170 | Msa1165640 | -0.828123 | 1.070724e-54 | -8.615850e-47 |
| Msa1041680 | Msa1165640 | 0.806056 | 9.899135e-50 | -8.615850e-47 |
| Msa1047020 | Msa1165640 | 0.806311 | 8.750401e-50 | -8.615850e-47 |
| Msa1050100 | Msa1165640 | 0.863261 | 2.824563e-64 | -8.615850e-47 |
| Msa1082170 | Msa1165640 | 0.837165 | 6.105936e-57 | -8.615850e-47 |
| Msa1083360 | Msa1165640 | -0.834582 | 2.758223e-56 | -8.615850e-47 |
| Msa1083370 | Msa1165640 | 0.847073 | 1.456348e-59 | -8.615850e-47 |
| Msa1096900 | Msa1165640 | 0.814942 | 1.191624e-51 | -8.615850e-47 |
| Msa0264640 | Msa1165640 | 0.801336 | 9.448642e-49 | -8.615850e-47 |
| Msa0277600 | Msa1165640 | 0.847427 | 1.164580e-59 | -8.615850e-47 |
| Msa0281330 | Msa1165640 | 0.852782 | 3.682460e-61 | -8.615850e-47 |
| Msa0281370 | Msa1165640 | 0.859572 | 3.770263e-63 | -8.615850e-47 |
| Msa0297830 | Msa1165640 | 0.808524 | 2.969640e-50 | -8.615850e-47 |
| Msa0301220 | Msa1165640 | 0.836471 | 9.179214e-57 | -8.615850e-47 |
| Msa0301250 | Msa1165640 | 0.818958 | 1.493618e-52 | -8.615850e-47 |
| Msa0312210 | Msa1165640 | 0.827895 | 1.214926e-54 | -8.615850e-47 |
| Msa0313060 | Msa1165640 | 0.848189 | 7.182581e-60 | -8.615850e-47 |
| Msa0313520 | Msa1165640 | 0.838972 | 2.092706e-57 | -8.615850e-47 |
| Msa0315430 | Msa1165640 | 0.851117 | 1.093503e-60 | -8.615850e-47 |
| Msa0315660 | Msa1165640 | 0.806649 | 7.422788e-50 | -8.615850e-47 |
| Msa0334030 | Msa1165640 | 0.803824 | 2.898307e-49 | -8.615850e-47 |
| Msa0335840 | Msa1165640 | 0.818371 | 2.029653e-52 | -8.615850e-47 |
| Msa0342860 | Msa1165640 | -0.826768 | 2.263524e-54 | -8.615850e-47 |
| Msa1126520 | Msa1165640 | 0.819658 | 1.034432e-52 | -8.615850e-47 |
| Msa1131030 | Msa1165640 | 0.845482 | 3.950549e-59 | -8.615850e-47 |
| Msa1164150 | Msa1165640 | 0.858951 | 5.789430e-63 | -8.615850e-47 |
| Msa1165640 | Msa1166570 | 0.803867 | 2.839548e-49 | -8.615850e-47 |
| Msa1165640 | Msa1166670 | 0.837015 | 6.669005e-57 | -8.615850e-47 |
| Msa1165640 | Msa1167540 | 0.800840 | 1.193524e-48 | -8.615850e-47 |
| Msa1165640 | Msa1186030 | 0.841427 | 4.784085e-58 | -8.615850e-47 |
| Msa1165640 | Msa1203560 | 0.804666 | 1.935685e-49 | -8.615850e-47 |
| Msa1165640 | Msa1206240 | 0.834549 | 2.810984e-56 | -8.615850e-47 |
| Msa1165640 | Msa1218170 | 0.808627 | 2.822611e-50 | -8.615850e-47 |
| Msa1165640 | Msa1240270 | 0.811823 | 5.772720e-51 | -8.615850e-47 |
| Msa1165640 | Msa1256840 | 0.800950 | 1.132908e-48 | -8.615850e-47 |
| Msa1165640 | Msa1311400 | 0.838454 | 2.847658e-57 | -8.615850e-47 |
| Msa1165640 | Msa1332250 | 0.801711 | 7.914765e-49 | -8.615850e-47 |
| Msa1165640 | Msa1341780 | 0.802057 | 6.718894e-49 | -8.615850e-47 |
| Msa1165640 | Msa1351020 | 0.824098 | 9.702283e-54 | -8.615850e-47 |
| Msa1165640 | Msa1351920 | -0.819660 | 1.033748e-52 | -8.615850e-47 |
| Msa1165640 | Msa1362210 | 0.875494 | 2.948564e-68 | -8.615850e-47 |
| Msa1165640 | Msa1363910 | 0.807954 | 3.926659e-50 | -8.615850e-47 |
| Msa1165640 | Msa1366730 | 0.800238 | 1.583217e-48 | -8.615850e-47 |
| Msa1165640 | Msa1368920 | 0.835111 | 2.029779e-56 | -8.615850e-47 |
| Msa1165640 | Msa1385480 | 0.809291 | 2.035168e-50 | -8.615850e-47 |
| Msa1165640 | Msa1418770 | 0.838893 | 2.194044e-57 | -8.615850e-47 |
| Msa1165640 | Msa1425070 | 0.847895 | 8.654661e-60 | -8.615850e-47 |
| Msa1165640 | Msa1432310 | 0.806429 | 8.261759e-50 | -8.615850e-47 |
| Msa1165640 | Msa1446410 | 0.874577 | 6.058204e-68 | -8.615850e-47 |
| Msa1165640 | Msa1449160 | 0.846780 | 1.752219e-59 | -8.615850e-47 |
| Msa1165640 | Msa1450560 | 0.810456 | 1.142663e-50 | -8.615850e-47 |
| Msa1165640 | Msa1463570 | 0.802852 | 4.608171e-49 | -8.615850e-47 |
| Msa0517480 | Msa1165640 | 0.840908 | 6.549181e-58 | -8.615850e-47 |
| Msa0529900 | Msa1165640 | 0.878292 | 3.159159e-69 | -8.615850e-47 |
| Msa0540480 | Msa1165640 | 0.803896 | 2.800468e-49 | -8.615850e-47 |
| Msa0547920 | Msa1165640 | 0.838693 | 2.471881e-57 | -8.615850e-47 |
| Msa0550420 | Msa1165640 | 0.820811 | 5.631716e-53 | -8.615850e-47 |
| Msa0573550 | Msa1165640 | 0.883209 | 5.443701e-71 | -8.615850e-47 |
| Msa0582070 | Msa1165640 | 0.837813 | 4.164018e-57 | -8.615850e-47 |
| Msa0591050 | Msa1165640 | 0.810607 | 1.059913e-50 | -8.615850e-47 |
| Msa0861320 | Msa1165640 | 0.851659 | 7.686154e-61 | -8.615850e-47 |
| Msa0929700 | Msa1165640 | 0.896189 | 4.681977e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165640 | MtrunA17_Chr7g0269621 | 100.000 | 219 | 0 | 0 | 1 | 219 | 1 | 219 | 2.60e-160 | 441 |
| Msa1165640 | MtrunA17_Chr1g0195141 | 98.925 | 186 | 2 | 0 | 1 | 186 | 1 | 186 | 4.82e-123 | 347 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1165640 | AT3G16780.1 | 82.791 | 215 | 31 | 3 | 1 | 215 | 1 | 209 | 7.20e-124 | 349 |
| Msa1165640 | AT1G02780.1 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 1.70e-116 | 331 |
| Msa1165640 | AT4G02230.1 | 91.489 | 188 | 16 | 0 | 1 | 188 | 1 | 188 | 2.57e-115 | 328 |
| Msa1165640 | AT4G16030.1 | 42.953 | 149 | 33 | 7 | 57 | 194 | 6 | 113 | 1.02e-17 | 76.3 |
Find 79 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCACGGCTGGCCTTGTTCT+TGG | 0.184984 | 7_4:+57590444 | None:intergenic |
| ATAATAGTCCCTGTTCTAAA+TGG | 0.256274 | 7_4:-57589936 | Msa1165640:three_prime_UTR |
| TAACCAGCTTCCTTATGTTT+TGG | 0.262188 | 7_4:+57591545 | None:intergenic |
| CTCTCTAGCCTTCTCAGCTT+TGG | 0.269286 | 7_4:+57590501 | None:intergenic |
| CATGTGCTTGTCAATCTTCT+TGG | 0.273354 | 7_4:+57590600 | None:intergenic |
| GAGATTTCGTTAACTTCATT+TGG | 0.301140 | 7_4:+57591674 | None:intergenic |
| GGCCTTGTTCTTGGCACGTT+TGG | 0.315875 | 7_4:+57590453 | None:intergenic |
| ATTATAATACTCACTGGGTC+TGG | 0.332335 | 7_4:+57590188 | None:intergenic |
| TGTGGGAAGCCTTGCCTCTC+TGG | 0.339458 | 7_4:+57590684 | None:intergenic |
| AGATTGCTTGGCTGAATTGT+TGG | 0.341299 | 7_4:-57590056 | Msa1165640:three_prime_UTR |
| GATTGCTTGGCTGAATTGTT+GGG | 0.356970 | 7_4:-57590055 | Msa1165640:three_prime_UTR |
| TTGTAAAATGTTTAGGGTCC+TGG | 0.366808 | 7_4:-57590268 | Msa1165640:intron |
| TTAAGGATGGGTTTATAATC+AGG | 0.382568 | 7_4:-57591525 | Msa1165640:CDS |
| AAAGGAAGACACTCTGGATA+TGG | 0.389292 | 7_4:-57591445 | Msa1165640:intron |
| AGTGCGGTCGTGGCAAAGTT+TGG | 0.396257 | 7_4:-57591703 | Msa1165640:CDS |
| CGCTGCAGTCTGAGATTGCT+TGG | 0.398433 | 7_4:-57590068 | Msa1165640:exon |
| GTTGGCTTTGTTGCAGCAAC+AGG | 0.405850 | 7_4:+57590211 | None:intergenic |
| AGCAAAACACCATTTAGAAC+AGG | 0.406056 | 7_4:+57589927 | None:intergenic |
| TGACATGTACATGAAGGTTA+AGG | 0.407532 | 7_4:-57590572 | Msa1165640:CDS |
| TTTGAATGTGCATAGGTAAG+AGG | 0.427942 | 7_4:-57590714 | Msa1165640:intron |
| AAACATAAGGAAGCTGGTTA+AGG | 0.436979 | 7_4:-57591542 | Msa1165640:CDS |
| TGTCAATCTTCTTGGCCTCC+CGG | 0.437210 | 7_4:+57590608 | None:intergenic |
| GACGTTTGCTCCGCAAGTAC+CGG | 0.438844 | 7_4:-57590627 | Msa1165640:CDS |
| GACCTTGTCTGACCAGTTTG+AGG | 0.454488 | 7_4:-57590476 | Msa1165640:CDS |
| TCTGCTGGCTTCTCTCCTCC+AGG | 0.456457 | 7_4:+57590250 | None:intergenic |
| AGCGTTCTCAAGTGCGGTCG+TGG | 0.462752 | 7_4:-57591713 | Msa1165640:CDS |
| ACGAGACCTGGAGTGAATCT+TGG | 0.472398 | 7_4:+57591495 | None:intergenic |
| TAAGAATAAGAGAGTTCTGA+TGG | 0.474240 | 7_4:-57590539 | Msa1165640:CDS |
| TGGCACGTTTGGCCTCAAAC+TGG | 0.475046 | 7_4:+57590464 | None:intergenic |
| AGCATGCTTCCTCTCACGGC+TGG | 0.480022 | 7_4:+57590432 | None:intergenic |
| TTATAATACTCACTGGGTCT+GGG | 0.483209 | 7_4:+57590189 | None:intergenic |
| GACATGTACATGAAGGTTAA+GGG | 0.489265 | 7_4:-57590571 | Msa1165640:CDS |
| GACTGTGTGAGCAGCAGCTA+AGG | 0.489602 | 7_4:+57591790 | None:intergenic |
| TCCTAGCATGCTTCCTCTCA+CGG | 0.495294 | 7_4:+57590428 | None:intergenic |
| AATACTCACTGGGTCTGGGT+TGG | 0.502471 | 7_4:+57590193 | None:intergenic |
| AAGAGGAAAGGAAGACACTC+TGG | 0.516416 | 7_4:-57591451 | Msa1165640:CDS |
| TCTTGGCCTCCCGGTACTTG+CGG | 0.524961 | 7_4:+57590617 | None:intergenic |
| GCAGCACTAGGAGCTTCTGC+TGG | 0.526670 | 7_4:+57590235 | None:intergenic |
| ACGTTTGCTCCGCAAGTACC+GGG | 0.538079 | 7_4:-57590626 | Msa1165640:CDS |
| CATTCTACGAGCACGAGACC+TGG | 0.539613 | 7_4:+57591483 | None:intergenic |
| ATAAGGAAGCTGGTTAAGGA+TGG | 0.542795 | 7_4:-57591538 | Msa1165640:CDS |
| CACGCATTCTTCTCATCCAA+AGG | 0.547413 | 7_4:+57590656 | None:intergenic |
| GCCGTGAGAGGAAGCATGCT+AGG | 0.550143 | 7_4:-57590429 | Msa1165640:CDS |
| TCACAAGTCCAAAGCTGAGA+AGG | 0.552682 | 7_4:-57590509 | Msa1165640:CDS |
| GTCTCGTGCTCGTAGAATGA+AGG | 0.553438 | 7_4:-57591479 | Msa1165640:CDS |
| ATGAAGGAAGCTAAGAGGAA+AGG | 0.554411 | 7_4:-57591463 | Msa1165640:CDS |
| AATGTGCATAGGTAAGAGGA+AGG | 0.560538 | 7_4:-57590710 | Msa1165640:intron |
| TAAGGAAGCTGGTTAAGGAT+GGG | 0.561785 | 7_4:-57591537 | Msa1165640:CDS |
| GTAGAATGAAGGAAGCTAAG+AGG | 0.564014 | 7_4:-57591468 | Msa1165640:CDS |
| GCAGCAACAGGTGCAGCACT+AGG | 0.565218 | 7_4:+57590223 | None:intergenic |
| ACCGCAAAAGAAATCAAAGA+AGG | 0.568261 | 7_4:-57590092 | Msa1165640:CDS |
| TGAGAGGAAGCATGCTAGGA+GGG | 0.573502 | 7_4:-57590425 | Msa1165640:CDS |
| AGAACAAGGCCAGCCGTGAG+AGG | 0.576244 | 7_4:-57590441 | Msa1165640:CDS |
| AGGCCAAAACATAAGGAAGC+TGG | 0.578002 | 7_4:-57591548 | Msa1165640:CDS |
| ACTTGAGAACGCTGGAAGCG+AGG | 0.578193 | 7_4:+57591723 | None:intergenic |
| TTGCAATTTGAGGGAGACCA+TGG | 0.583099 | 7_4:+57591751 | None:intergenic |
| TGAGCAGCAGCTAAGGCAAA+TGG | 0.590673 | 7_4:+57591797 | None:intergenic |
| GGCCAAACGTGCCAAGAACA+AGG | 0.590924 | 7_4:-57590455 | Msa1165640:CDS |
| GGCCTCAAACTGGTCAGACA+AGG | 0.594906 | 7_4:+57590474 | None:intergenic |
| TAACCTTCATGTACATGTCA+TGG | 0.601477 | 7_4:+57590575 | None:intergenic |
| GACCTGGAGTGAATCTTGGT+GGG | 0.604962 | 7_4:+57591499 | None:intergenic |
| CTACTTTAGAACAGCAACTG+AGG | 0.612176 | 7_4:+57590025 | None:intergenic |
| AACCCACCAAGATTCACTCC+AGG | 0.614800 | 7_4:-57591501 | Msa1165640:CDS |
| TGAAGTTAACGAAATCTCCA+TGG | 0.615795 | 7_4:-57591669 | Msa1165640:CDS |
| AGACCTGGAGTGAATCTTGG+TGG | 0.619616 | 7_4:+57591498 | None:intergenic |
| ACGACCGCACTTGAGAACGC+TGG | 0.620586 | 7_4:+57591715 | None:intergenic |
| GTGAGAGGAAGCATGCTAGG+AGG | 0.624464 | 7_4:-57590426 | Msa1165640:CDS |
| GCTTCCAGCGTTCTCAAGTG+CGG | 0.631493 | 7_4:-57591719 | Msa1165640:CDS |
| TAAAATGTTTAGGGTCCTGG+AGG | 0.638656 | 7_4:-57590265 | Msa1165640:intron |
| CAAGCAATCTCAGACTGCAG+CGG | 0.641887 | 7_4:+57590069 | None:intergenic |
| TAGCTTACGAGAATTAGCCA+TGG | 0.650085 | 7_4:+57591652 | None:intergenic |
| GTACCATGACATGTACATGA+AGG | 0.655137 | 7_4:-57590578 | Msa1165640:CDS |
| GAGGAAGCATGCTAGGAGGG+AGG | 0.658603 | 7_4:-57590422 | Msa1165640:CDS |
| GGAAGGGTACCAGAGAGGCA+AGG | 0.658732 | 7_4:-57590693 | Msa1165640:CDS |
| CAGAAACAAGCAATCAACCA+TGG | 0.677132 | 7_4:-57591768 | Msa1165640:exon |
| TAAGAGGAAGGGTACCAGAG+AGG | 0.678708 | 7_4:-57590698 | Msa1165640:CDS |
| GCAAAACACCATTTAGAACA+GGG | 0.681819 | 7_4:+57589928 | None:intergenic |
| ATGTGCATAGGTAAGAGGAA+GGG | 0.705490 | 7_4:-57590709 | Msa1165640:intron |
| TTTGCTCCGCAAGTACCGGG+AGG | 0.725507 | 7_4:-57590623 | Msa1165640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATATAAACAAACAAAA+TGG | + | chr7_4:57590349-57590368 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr7_4:57591320-57591339 | Msa1165640:intron | 10.0% |
| !! | TATAATATAAACAAACAAAA+TGG | + | chr7_4:57590349-57590368 | None:intergenic | 10.0% |
| !!! | ATTCTTTTTGAAATTATTAA+TGG | - | chr7_4:57591320-57591339 | Msa1165640:intron | 10.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr7_4:57590246-57590265 | Msa1165640:CDS | 15.0% |
| !! | ATATATTTCAGTTTACAAAA+TGG | - | chr7_4:57590658-57590677 | Msa1165640:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr7_4:57590693-57590712 | Msa1165640:CDS | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr7_4:57591353-57591372 | Msa1165640:intron | 15.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr7_4:57591447-57591466 | None:intergenic | 15.0% |
| !!! | ATGTTTTTATACTTTTCTAA+TGG | - | chr7_4:57591774-57591793 | Msa1165640:five_prime_UTR | 15.0% |
| !! | ATCTATTCTTATTATGATTT+AGG | - | chr7_4:57590246-57590265 | Msa1165640:CDS | 15.0% |
| !! | ATATATTTCAGTTTACAAAA+TGG | - | chr7_4:57590658-57590677 | Msa1165640:CDS | 15.0% |
| !! | TAATAATTGTTTGAAAACTA+TGG | - | chr7_4:57590693-57590712 | Msa1165640:CDS | 15.0% |
| !!! | TTTTCTTTGTAAAATGTTTA+GGG | - | chr7_4:57591353-57591372 | Msa1165640:intron | 15.0% |
| !! | AATAAATTATAATACTCACT+GGG | + | chr7_4:57591447-57591466 | None:intergenic | 15.0% |
| !!! | ATGTTTTTATACTTTTCTAA+TGG | - | chr7_4:57591774-57591793 | Msa1165640:five_prime_UTR | 15.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr7_4:57590059-57590078 | Msa1165640:exon | 20.0% |
| !!! | TGAAATATATTTTGTTGTGA+CGG | + | chr7_4:57590648-57590667 | None:intergenic | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | + | chr7_4:57590804-57590823 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr7_4:57591254-57591273 | None:intergenic | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr7_4:57591354-57591373 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr7_4:57591352-57591371 | Msa1165640:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr7_4:57591448-57591467 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTCAGTTATC+AGG | - | chr7_4:57591657-57591676 | Msa1165640:intron | 20.0% |
| !!! | TTTTTGTTATGATTTTGTTG+CGG | - | chr7_4:57591724-57591743 | Msa1165640:CDS | 20.0% |
| !!! | AAAGTTGATTTTGATTTTGT+AGG | - | chr7_4:57590059-57590078 | Msa1165640:exon | 20.0% |
| !!! | TGAAATATATTTTGTTGTGA+CGG | + | chr7_4:57590648-57590667 | None:intergenic | 20.0% |
| !!! | TCATATTTTACAAAACAACA+TGG | + | chr7_4:57590804-57590823 | None:intergenic | 20.0% |
| !! | AAAGAATTTCAAGAAATCAT+AGG | + | chr7_4:57591254-57591273 | None:intergenic | 20.0% |
| !!! | CTAAACATTTTACAAAGAAA+AGG | + | chr7_4:57591354-57591373 | None:intergenic | 20.0% |
| !!! | CTTTTCTTTGTAAAATGTTT+AGG | - | chr7_4:57591352-57591371 | Msa1165640:intron | 20.0% |
| !! | GAATAAATTATAATACTCAC+TGG | + | chr7_4:57591448-57591467 | None:intergenic | 20.0% |
| !!! | TGTTTAATTTTTCAGTTATC+AGG | - | chr7_4:57591657-57591676 | Msa1165640:intron | 20.0% |
| !!! | TTTTTGTTATGATTTTGTTG+CGG | - | chr7_4:57591724-57591743 | Msa1165640:CDS | 20.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr7_4:57590228-57590247 | None:intergenic | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr7_4:57590824-57590843 | Msa1165640:intron | 25.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr7_4:57591278-57591297 | Msa1165640:intron | 25.0% |
| !! | ATTTAAAATGAAGCTAATCG+AGG | + | chr7_4:57590228-57590247 | None:intergenic | 25.0% |
| ! | GAAATACGAGTTTACATTTA+TGG | - | chr7_4:57590824-57590843 | Msa1165640:intron | 25.0% |
| ! | ACATAGATGTATATGATTTG+AGG | - | chr7_4:57591278-57591297 | Msa1165640:intron | 25.0% |
| GAGATTTCGTTAACTTCATT+TGG | + | chr7_4:57589956-57589975 | None:intergenic | 30.0% | |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr7_4:57590072-57590091 | Msa1165640:exon | 30.0% |
| ! | TTAAGGATGGGTTTATAATC+AGG | - | chr7_4:57590102-57590121 | Msa1165640:intron | 30.0% |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr7_4:57590570-57590589 | None:intergenic | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | + | chr7_4:57590617-57590636 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | + | chr7_4:57590627-57590646 | None:intergenic | 30.0% |
| AAAAACTGTCAACAATTCCA+AGG | + | chr7_4:57590719-57590738 | None:intergenic | 30.0% | |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr7_4:57591088-57591107 | Msa1165640:intron | 30.0% |
| TTAAACAATCATGCATAGCA+GGG | + | chr7_4:57591496-57591515 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr7_4:57591497-57591516 | None:intergenic | 30.0% | |
| ! | ATAATAGTCCCTGTTCTAAA+TGG | - | chr7_4:57591691-57591710 | Msa1165640:CDS | 30.0% |
| GAGATTTCGTTAACTTCATT+TGG | + | chr7_4:57589956-57589975 | None:intergenic | 30.0% | |
| ! | ATTTTGTAGGCCAAAACATA+AGG | - | chr7_4:57590072-57590091 | Msa1165640:exon | 30.0% |
| ! | TTAAGGATGGGTTTATAATC+AGG | - | chr7_4:57590102-57590121 | Msa1165640:intron | 30.0% |
| ! | AACTAATCAATCTAAGACAG+TGG | + | chr7_4:57590570-57590589 | None:intergenic | 30.0% |
| !! | GTTAACATTTTGGTGTGAAA+AGG | + | chr7_4:57590617-57590636 | None:intergenic | 30.0% |
| ! | GGAGTGAAAAGTTAACATTT+TGG | + | chr7_4:57590627-57590646 | None:intergenic | 30.0% |
| AAAAACTGTCAACAATTCCA+AGG | + | chr7_4:57590719-57590738 | None:intergenic | 30.0% | |
| ! | TAAGAATAAGAGAGTTCTGA+TGG | - | chr7_4:57591088-57591107 | Msa1165640:intron | 30.0% |
| TTAAACAATCATGCATAGCA+GGG | + | chr7_4:57591496-57591515 | None:intergenic | 30.0% | |
| TTTAAACAATCATGCATAGC+AGG | + | chr7_4:57591497-57591516 | None:intergenic | 30.0% | |
| ! | ATAATAGTCCCTGTTCTAAA+TGG | - | chr7_4:57591691-57591710 | Msa1165640:CDS | 30.0% |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr7_4:57589958-57589977 | Msa1165640:three_prime_UTR | 35.0% | |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr7_4:57590085-57590104 | None:intergenic | 35.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr7_4:57590085-57590104 | Msa1165640:CDS | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr7_4:57590222-57590241 | None:intergenic | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr7_4:57590223-57590242 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | - | chr7_4:57590699-57590718 | Msa1165640:CDS | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr7_4:57590770-57590789 | Msa1165640:intron | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr7_4:57590829-57590848 | Msa1165640:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr7_4:57590906-57590925 | Msa1165640:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr7_4:57590913-57590932 | Msa1165640:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | + | chr7_4:57590963-57590982 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | + | chr7_4:57590964-57590983 | None:intergenic | 35.0% |
| TAACCTTCATGTACATGTCA+TGG | + | chr7_4:57591055-57591074 | None:intergenic | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr7_4:57591055-57591074 | Msa1165640:intron | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr7_4:57591056-57591075 | Msa1165640:intron | 35.0% | |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr7_4:57591359-57591378 | Msa1165640:intron | 35.0% |
| TTATAATACTCACTGGGTCT+GGG | + | chr7_4:57591441-57591460 | None:intergenic | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr7_4:57591442-57591461 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr7_4:57591535-57591554 | Msa1165640:CDS | 35.0% | |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr7_4:57591539-57591558 | None:intergenic | 35.0% |
| !! | GTTTTGACGAGTCTTTTTGT+TGG | - | chr7_4:57591624-57591643 | Msa1165640:intron | 35.0% |
| ! | GCAAAACACCATTTAGAACA+GGG | + | chr7_4:57591702-57591721 | None:intergenic | 35.0% |
| ! | AGCAAAACACCATTTAGAAC+AGG | + | chr7_4:57591703-57591722 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCGGAAACACTT+TGG | - | chr7_4:57591735-57591754 | Msa1165640:CDS | 35.0% |
| TGAAGTTAACGAAATCTCCA+TGG | - | chr7_4:57589958-57589977 | Msa1165640:three_prime_UTR | 35.0% | |
| ! | TAACCAGCTTCCTTATGTTT+TGG | + | chr7_4:57590085-57590104 | None:intergenic | 35.0% |
| AAACATAAGGAAGCTGGTTA+AGG | - | chr7_4:57590085-57590104 | Msa1165640:CDS | 35.0% | |
| AATGAAGCTAATCGAGGTTA+GGG | + | chr7_4:57590222-57590241 | None:intergenic | 35.0% | |
| AAATGAAGCTAATCGAGGTT+AGG | + | chr7_4:57590223-57590242 | None:intergenic | 35.0% | |
| TTGTTTGAAAACTATGGCCT+TGG | - | chr7_4:57590699-57590718 | Msa1165640:CDS | 35.0% | |
| TTACTGAGTTGCTCATCAAT+TGG | - | chr7_4:57590770-57590789 | Msa1165640:intron | 35.0% | |
| ACGAGTTTACATTTATGGAC+TGG | - | chr7_4:57590829-57590848 | Msa1165640:intron | 35.0% | |
| GTGTTTGTTTGAATGTGCAT+AGG | - | chr7_4:57590906-57590925 | Msa1165640:intron | 35.0% | |
| TTTGAATGTGCATAGGTAAG+AGG | - | chr7_4:57590913-57590932 | Msa1165640:intron | 35.0% | |
| ! | CTCATCCAAAGGATTTTTGT+GGG | + | chr7_4:57590963-57590982 | None:intergenic | 35.0% |
| ! | TCTCATCCAAAGGATTTTTG+TGG | + | chr7_4:57590964-57590983 | None:intergenic | 35.0% |
| TAACCTTCATGTACATGTCA+TGG | + | chr7_4:57591055-57591074 | None:intergenic | 35.0% | |
| TGACATGTACATGAAGGTTA+AGG | - | chr7_4:57591055-57591074 | Msa1165640:intron | 35.0% | |
| GACATGTACATGAAGGTTAA+GGG | - | chr7_4:57591056-57591075 | Msa1165640:intron | 35.0% | |
| ! | TTGTAAAATGTTTAGGGTCC+TGG | - | chr7_4:57591359-57591378 | Msa1165640:intron | 35.0% |
| TTATAATACTCACTGGGTCT+GGG | + | chr7_4:57591441-57591460 | None:intergenic | 35.0% | |
| ATTATAATACTCACTGGGTC+TGG | + | chr7_4:57591442-57591461 | None:intergenic | 35.0% | |
| ACCGCAAAAGAAATCAAAGA+AGG | - | chr7_4:57591535-57591554 | Msa1165640:CDS | 35.0% | |
| !! | GCCTTCTTTGATTTCTTTTG+CGG | + | chr7_4:57591539-57591558 | None:intergenic | 35.0% |
| !! | GTTTTGACGAGTCTTTTTGT+TGG | - | chr7_4:57591624-57591643 | Msa1165640:intron | 35.0% |
| ! | GCAAAACACCATTTAGAACA+GGG | + | chr7_4:57591702-57591721 | None:intergenic | 35.0% |
| ! | AGCAAAACACCATTTAGAAC+AGG | + | chr7_4:57591703-57591722 | None:intergenic | 35.0% |
| ! | ATTTTGTTGCGGAAACACTT+TGG | - | chr7_4:57591735-57591754 | Msa1165640:CDS | 35.0% |
| CAGAAACAAGCAATCAACCA+TGG | - | chr7_4:57589859-57589878 | Msa1165640:three_prime_UTR | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr7_4:57589978-57589997 | None:intergenic | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr7_4:57590089-57590108 | Msa1165640:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr7_4:57590090-57590109 | Msa1165640:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr7_4:57590159-57590178 | Msa1165640:intron | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr7_4:57590164-57590183 | Msa1165640:intron | 40.0% | |
| AAAGGAAGACACTCTGGATA+TGG | - | chr7_4:57590182-57590201 | Msa1165640:intron | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr7_4:57590221-57590240 | None:intergenic | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr7_4:57590868-57590887 | None:intergenic | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr7_4:57590917-57590936 | Msa1165640:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr7_4:57590918-57590937 | Msa1165640:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | + | chr7_4:57591030-57591049 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr7_4:57591049-57591068 | Msa1165640:intron | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr7_4:57591362-57591381 | Msa1165640:intron | 40.0% |
| AGATTGCTTGGCTGAATTGT+TGG | - | chr7_4:57591571-57591590 | Msa1165640:intron | 40.0% | |
| GATTGCTTGGCTGAATTGTT+GGG | - | chr7_4:57591572-57591591 | Msa1165640:intron | 40.0% | |
| !! | CTACTTTAGAACAGCAACTG+AGG | + | chr7_4:57591605-57591624 | None:intergenic | 40.0% |
| CAGAAACAAGCAATCAACCA+TGG | - | chr7_4:57589859-57589878 | Msa1165640:three_prime_UTR | 40.0% | |
| TAGCTTACGAGAATTAGCCA+TGG | + | chr7_4:57589978-57589997 | None:intergenic | 40.0% | |
| ATAAGGAAGCTGGTTAAGGA+TGG | - | chr7_4:57590089-57590108 | Msa1165640:CDS | 40.0% | |
| TAAGGAAGCTGGTTAAGGAT+GGG | - | chr7_4:57590090-57590109 | Msa1165640:CDS | 40.0% | |
| GTAGAATGAAGGAAGCTAAG+AGG | - | chr7_4:57590159-57590178 | Msa1165640:intron | 40.0% | |
| ATGAAGGAAGCTAAGAGGAA+AGG | - | chr7_4:57590164-57590183 | Msa1165640:intron | 40.0% | |
| AAAGGAAGACACTCTGGATA+TGG | - | chr7_4:57590182-57590201 | Msa1165640:intron | 40.0% | |
| ATGAAGCTAATCGAGGTTAG+GGG | + | chr7_4:57590221-57590240 | None:intergenic | 40.0% | |
| ATATCTCTAGATGACCAGAC+AGG | + | chr7_4:57590868-57590887 | None:intergenic | 40.0% | |
| AATGTGCATAGGTAAGAGGA+AGG | - | chr7_4:57590917-57590936 | Msa1165640:intron | 40.0% | |
| ATGTGCATAGGTAAGAGGAA+GGG | - | chr7_4:57590918-57590937 | Msa1165640:intron | 40.0% | |
| CATGTGCTTGTCAATCTTCT+TGG | + | chr7_4:57591030-57591049 | None:intergenic | 40.0% | |
| GTACCATGACATGTACATGA+AGG | - | chr7_4:57591049-57591068 | Msa1165640:intron | 40.0% | |
| ! | TAAAATGTTTAGGGTCCTGG+AGG | - | chr7_4:57591362-57591381 | Msa1165640:intron | 40.0% |
| AGATTGCTTGGCTGAATTGT+TGG | - | chr7_4:57591571-57591590 | Msa1165640:intron | 40.0% | |
| GATTGCTTGGCTGAATTGTT+GGG | - | chr7_4:57591572-57591591 | Msa1165640:intron | 40.0% | |
| !! | CTACTTTAGAACAGCAACTG+AGG | + | chr7_4:57591605-57591624 | None:intergenic | 40.0% |
| TTGCAATTTGAGGGAGACCA+TGG | + | chr7_4:57589879-57589898 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr7_4:57589888-57589907 | None:intergenic | 45.0% |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr7_4:57590079-57590098 | Msa1165640:CDS | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr7_4:57590176-57590195 | Msa1165640:intron | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr7_4:57590186-57590205 | Msa1165640:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | - | chr7_4:57590955-57590974 | Msa1165640:intron | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | + | chr7_4:57590974-57590993 | None:intergenic | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr7_4:57591118-57591137 | Msa1165640:intron | 45.0% | |
| AACAATCATGCATAGCAGGG+CGG | + | chr7_4:57591493-57591512 | None:intergenic | 45.0% | |
| TTGCAATTTGAGGGAGACCA+TGG | + | chr7_4:57589879-57589898 | None:intergenic | 45.0% | |
| !! | GAGGCGCTTTTGCAATTTGA+GGG | + | chr7_4:57589888-57589907 | None:intergenic | 45.0% |
| AGGCCAAAACATAAGGAAGC+TGG | - | chr7_4:57590079-57590098 | Msa1165640:CDS | 45.0% | |
| AAGAGGAAAGGAAGACACTC+TGG | - | chr7_4:57590176-57590195 | Msa1165640:intron | 45.0% | |
| GAAGACACTCTGGATATGGT+TGG | - | chr7_4:57590186-57590205 | Msa1165640:intron | 45.0% | |
| GGCTTCCCACAAAAATCCTT+TGG | - | chr7_4:57590955-57590974 | Msa1165640:intron | 45.0% | |
| CACGCATTCTTCTCATCCAA+AGG | + | chr7_4:57590974-57590993 | None:intergenic | 45.0% | |
| TCACAAGTCCAAAGCTGAGA+AGG | - | chr7_4:57591118-57591137 | Msa1165640:intron | 45.0% | |
| AACAATCATGCATAGCAGGG+CGG | + | chr7_4:57591493-57591512 | None:intergenic | 45.0% | |
| !!! | AAATAAATTTTATTTAAGAT+CGG | + | chr7_4:57590400-57590419 | None:intergenic | 5.0% |
| !!! | AAATAAATTTTATTTAAGAT+CGG | + | chr7_4:57590400-57590419 | None:intergenic | 5.0% |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr7_4:57589889-57589908 | None:intergenic | 50.0% |
| AACCCACCAAGATTCACTCC+AGG | - | chr7_4:57590126-57590145 | Msa1165640:intron | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | + | chr7_4:57590131-57590150 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | + | chr7_4:57590132-57590151 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr7_4:57590135-57590154 | None:intergenic | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr7_4:57590148-57590167 | Msa1165640:intron | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | - | chr7_4:57590851-57590870 | Msa1165640:intron | 50.0% | |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr7_4:57590929-57590948 | Msa1165640:intron | 50.0% |
| TGTCAATCTTCTTGGCCTCC+CGG | + | chr7_4:57591022-57591041 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr7_4:57591129-57591148 | None:intergenic | 50.0% |
| GACCTTGTCTGACCAGTTTG+AGG | - | chr7_4:57591151-57591170 | Msa1165640:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr7_4:57591202-57591221 | None:intergenic | 50.0% | |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr7_4:57591202-57591221 | Msa1165640:intron | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr7_4:57591419-57591438 | None:intergenic | 50.0% |
| AATACTCACTGGGTCTGGGT+TGG | + | chr7_4:57591437-57591456 | None:intergenic | 50.0% | |
| CAAGCAATCTCAGACTGCAG+CGG | + | chr7_4:57591561-57591580 | None:intergenic | 50.0% | |
| !! | CGAGGCGCTTTTGCAATTTG+AGG | + | chr7_4:57589889-57589908 | None:intergenic | 50.0% |
| AACCCACCAAGATTCACTCC+AGG | - | chr7_4:57590126-57590145 | Msa1165640:intron | 50.0% | |
| GACCTGGAGTGAATCTTGGT+GGG | + | chr7_4:57590131-57590150 | None:intergenic | 50.0% | |
| AGACCTGGAGTGAATCTTGG+TGG | + | chr7_4:57590132-57590151 | None:intergenic | 50.0% | |
| ACGAGACCTGGAGTGAATCT+TGG | + | chr7_4:57590135-57590154 | None:intergenic | 50.0% | |
| GTCTCGTGCTCGTAGAATGA+AGG | - | chr7_4:57590148-57590167 | Msa1165640:intron | 50.0% | |
| GCTCAAAGCATGTTCCTGTC+TGG | - | chr7_4:57590851-57590870 | Msa1165640:intron | 50.0% | |
| !! | TAAGAGGAAGGGTACCAGAG+AGG | - | chr7_4:57590929-57590948 | Msa1165640:intron | 50.0% |
| TGTCAATCTTCTTGGCCTCC+CGG | + | chr7_4:57591022-57591041 | None:intergenic | 50.0% | |
| ! | CTCTCTAGCCTTCTCAGCTT+TGG | + | chr7_4:57591129-57591148 | None:intergenic | 50.0% |
| GACCTTGTCTGACCAGTTTG+AGG | - | chr7_4:57591151-57591170 | Msa1165640:intron | 50.0% | |
| TCCTAGCATGCTTCCTCTCA+CGG | + | chr7_4:57591202-57591221 | None:intergenic | 50.0% | |
| ! | TGAGAGGAAGCATGCTAGGA+GGG | - | chr7_4:57591202-57591221 | Msa1165640:intron | 50.0% |
| !! | GTTGGCTTTGTTGCAGCAAC+AGG | + | chr7_4:57591419-57591438 | None:intergenic | 50.0% |
| AATACTCACTGGGTCTGGGT+TGG | + | chr7_4:57591437-57591456 | None:intergenic | 50.0% | |
| CAAGCAATCTCAGACTGCAG+CGG | + | chr7_4:57591561-57591580 | None:intergenic | 50.0% | |
| GACTGTGTGAGCAGCAGCTA+AGG | + | chr7_4:57589840-57589859 | None:intergenic | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr7_4:57589907-57589926 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr7_4:57589908-57589927 | Msa1165640:three_prime_UTR | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr7_4:57589924-57589943 | Msa1165640:three_prime_UTR | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr7_4:57590147-57590166 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr7_4:57591000-57591019 | Msa1165640:intron | 55.0% | |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr7_4:57591001-57591020 | Msa1165640:intron | 55.0% | |
| GGCCTCAAACTGGTCAGACA+AGG | + | chr7_4:57591156-57591175 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr7_4:57591166-57591185 | None:intergenic | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr7_4:57591172-57591191 | Msa1165640:intron | 55.0% | |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr7_4:57591177-57591196 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr7_4:57591201-57591220 | Msa1165640:intron | 55.0% |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr7_4:57591489-57591508 | None:intergenic | 55.0% | |
| ! | CGCTGCAGTCTGAGATTGCT+TGG | - | chr7_4:57591559-57591578 | Msa1165640:intron | 55.0% |
| GACTGTGTGAGCAGCAGCTA+AGG | + | chr7_4:57589840-57589859 | None:intergenic | 55.0% | |
| ACTTGAGAACGCTGGAAGCG+AGG | + | chr7_4:57589907-57589926 | None:intergenic | 55.0% | |
| GCTTCCAGCGTTCTCAAGTG+CGG | - | chr7_4:57589908-57589927 | Msa1165640:three_prime_UTR | 55.0% | |
| AGTGCGGTCGTGGCAAAGTT+TGG | - | chr7_4:57589924-57589943 | Msa1165640:three_prime_UTR | 55.0% | |
| CATTCTACGAGCACGAGACC+TGG | + | chr7_4:57590147-57590166 | None:intergenic | 55.0% | |
| GACGTTTGCTCCGCAAGTAC+CGG | - | chr7_4:57591000-57591019 | Msa1165640:intron | 55.0% | |
| ACGTTTGCTCCGCAAGTACC+GGG | - | chr7_4:57591001-57591020 | Msa1165640:intron | 55.0% | |
| GGCCTCAAACTGGTCAGACA+AGG | + | chr7_4:57591156-57591175 | None:intergenic | 55.0% | |
| TGGCACGTTTGGCCTCAAAC+TGG | + | chr7_4:57591166-57591185 | None:intergenic | 55.0% | |
| GGCCAAACGTGCCAAGAACA+AGG | - | chr7_4:57591172-57591191 | Msa1165640:intron | 55.0% | |
| !! | GGCCTTGTTCTTGGCACGTT+TGG | + | chr7_4:57591177-57591196 | None:intergenic | 55.0% |
| ! | GTGAGAGGAAGCATGCTAGG+AGG | - | chr7_4:57591201-57591220 | Msa1165640:intron | 55.0% |
| ATCATGCATAGCAGGGCGGA+AGG | + | chr7_4:57591489-57591508 | None:intergenic | 55.0% | |
| ! | CGCTGCAGTCTGAGATTGCT+TGG | - | chr7_4:57591559-57591578 | Msa1165640:intron | 55.0% |
| ACGACCGCACTTGAGAACGC+TGG | + | chr7_4:57589915-57589934 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr7_4:57589914-57589933 | Msa1165640:three_prime_UTR | 60.0% | |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr7_4:57590934-57590953 | Msa1165640:intron | 60.0% |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr7_4:57590946-57590965 | None:intergenic | 60.0% | |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr7_4:57591004-57591023 | Msa1165640:intron | 60.0% |
| TCTTGGCCTCCCGGTACTTG+CGG | + | chr7_4:57591013-57591032 | None:intergenic | 60.0% | |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr7_4:57591186-57591205 | None:intergenic | 60.0% |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr7_4:57591186-57591205 | Msa1165640:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr7_4:57591198-57591217 | None:intergenic | 60.0% | |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr7_4:57591198-57591217 | Msa1165640:intron | 60.0% |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr7_4:57591205-57591224 | Msa1165640:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr7_4:57591380-57591399 | None:intergenic | 60.0% |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr7_4:57591395-57591414 | None:intergenic | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr7_4:57591407-57591426 | None:intergenic | 60.0% | |
| ACGACCGCACTTGAGAACGC+TGG | + | chr7_4:57589915-57589934 | None:intergenic | 60.0% | |
| AGCGTTCTCAAGTGCGGTCG+TGG | - | chr7_4:57589914-57589933 | Msa1165640:three_prime_UTR | 60.0% | |
| !! | GGAAGGGTACCAGAGAGGCA+AGG | - | chr7_4:57590934-57590953 | Msa1165640:intron | 60.0% |
| TGTGGGAAGCCTTGCCTCTC+TGG | + | chr7_4:57590946-57590965 | None:intergenic | 60.0% | |
| !! | TTTGCTCCGCAAGTACCGGG+AGG | - | chr7_4:57591004-57591023 | Msa1165640:intron | 60.0% |
| TCTTGGCCTCCCGGTACTTG+CGG | + | chr7_4:57591013-57591032 | None:intergenic | 60.0% | |
| !! | CTCACGGCTGGCCTTGTTCT+TGG | + | chr7_4:57591186-57591205 | None:intergenic | 60.0% |
| AGAACAAGGCCAGCCGTGAG+AGG | - | chr7_4:57591186-57591205 | Msa1165640:intron | 60.0% | |
| AGCATGCTTCCTCTCACGGC+TGG | + | chr7_4:57591198-57591217 | None:intergenic | 60.0% | |
| ! | GCCGTGAGAGGAAGCATGCT+AGG | - | chr7_4:57591198-57591217 | Msa1165640:intron | 60.0% |
| ! | GAGGAAGCATGCTAGGAGGG+AGG | - | chr7_4:57591205-57591224 | Msa1165640:intron | 60.0% |
| !! | TCTGCTGGCTTCTCTCCTCC+AGG | + | chr7_4:57591380-57591399 | None:intergenic | 60.0% |
| GCAGCACTAGGAGCTTCTGC+TGG | + | chr7_4:57591395-57591414 | None:intergenic | 60.0% | |
| GCAGCAACAGGTGCAGCACT+AGG | + | chr7_4:57591407-57591426 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 57589832 | 57591817 | 57589832 | ID=Msa1165640;Name=Msa1165640 |
| chr7_4 | mRNA | 57589832 | 57591817 | 57589832 | ID=Msa1165640-mRNA-1;Parent=Msa1165640;Name=Msa1165640-mRNA-1;_AED=0.10;_eAED=0.10;_QI=46|1|1|1|1|1|5|246|219 |
| chr7_4 | exon | 57589832 | 57590114 | 57589832 | ID=Msa1165640-mRNA-1:exon:17486;Parent=Msa1165640-mRNA-1 |
| chr7_4 | exon | 57590202 | 57590275 | 57590202 | ID=Msa1165640-mRNA-1:exon:17485;Parent=Msa1165640-mRNA-1 |
| chr7_4 | exon | 57590408 | 57590721 | 57590408 | ID=Msa1165640-mRNA-1:exon:17484;Parent=Msa1165640-mRNA-1 |
| chr7_4 | exon | 57591446 | 57591568 | 57591446 | ID=Msa1165640-mRNA-1:exon:17483;Parent=Msa1165640-mRNA-1 |
| chr7_4 | exon | 57591660 | 57591817 | 57591660 | ID=Msa1165640-mRNA-1:exon:17482;Parent=Msa1165640-mRNA-1 |
| chr7_4 | five_prime_UTR | 57591772 | 57591817 | 57591772 | ID=Msa1165640-mRNA-1:five_prime_utr;Parent=Msa1165640-mRNA-1 |
| chr7_4 | CDS | 57591660 | 57591771 | 57591660 | ID=Msa1165640-mRNA-1:cds;Parent=Msa1165640-mRNA-1 |
| chr7_4 | CDS | 57591446 | 57591568 | 57591446 | ID=Msa1165640-mRNA-1:cds;Parent=Msa1165640-mRNA-1 |
| chr7_4 | CDS | 57590408 | 57590721 | 57590408 | ID=Msa1165640-mRNA-1:cds;Parent=Msa1165640-mRNA-1 |
| chr7_4 | CDS | 57590202 | 57590275 | 57590202 | ID=Msa1165640-mRNA-1:cds;Parent=Msa1165640-mRNA-1 |
| chr7_4 | CDS | 57590078 | 57590114 | 57590078 | ID=Msa1165640-mRNA-1:cds;Parent=Msa1165640-mRNA-1 |
| chr7_4 | three_prime_UTR | 57589832 | 57590077 | 57589832 | ID=Msa1165640-mRNA-1:three_prime_utr;Parent=Msa1165640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
