Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352140 | GER48995.1 | 51.852 | 270 | 79 | 2 | 47 | 266 | 3 | 271 | 1.84e-97 | 298 |
| Msa1352140 | GER48995.1 | 70.000 | 120 | 36 | 0 | 154 | 273 | 1 | 120 | 1.72e-57 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352140 | A0A5A7QUI4 | 51.852 | 270 | 79 | 2 | 47 | 266 | 3 | 271 | 8.77e-98 | 298 |
| Msa1352140 | A0A5A7QUI4 | 70.000 | 120 | 36 | 0 | 154 | 273 | 1 | 120 | 8.23e-58 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1352140 | Msa1356790 | 0.818177 | 2.245583e-52 | -8.615850e-47 |
| Msa1352140 | Msa1374240 | 0.802738 | 4.866231e-49 | -8.615850e-47 |
| Msa1352140 | Msa1392590 | 0.822077 | 2.873502e-53 | -8.615850e-47 |
| Msa1352140 | Msa1403910 | 0.829092 | 6.246582e-55 | -8.615850e-47 |
| Msa0705800 | Msa1352140 | 0.851042 | 1.148513e-60 | -8.615850e-47 |
| Msa0712610 | Msa1352140 | 0.824297 | 8.712211e-54 | -8.615850e-47 |
| Msa0786660 | Msa1352140 | 0.835391 | 1.724027e-56 | -8.615850e-47 |
| Msa0788380 | Msa1352140 | 0.807809 | 4.215267e-50 | -8.615850e-47 |
| Msa0822580 | Msa1352140 | 0.822797 | 1.954565e-53 | -8.615850e-47 |
| Msa0191450 | Msa1352140 | 0.834006 | 3.845995e-56 | -8.615850e-47 |
| Msa1240270 | Msa1352140 | 0.839977 | 1.147104e-57 | -8.615850e-47 |
| Msa1301640 | Msa1352140 | 0.803653 | 3.145218e-49 | -8.615850e-47 |
| Msa0369410 | Msa1352140 | 0.802075 | 6.663038e-49 | -8.615850e-47 |
| Msa0481520 | Msa1352140 | 0.841049 | 6.013940e-58 | -8.615850e-47 |
| Msa1082170 | Msa1352140 | 0.812906 | 3.348329e-51 | -8.615850e-47 |
| Msa1083370 | Msa1352140 | 0.806641 | 7.454670e-50 | -8.615850e-47 |
| Msa0297830 | Msa1352140 | 0.812152 | 4.894989e-51 | -8.615850e-47 |
| Msa0335840 | Msa1352140 | 0.817707 | 2.867206e-52 | -8.615850e-47 |
| Msa1126520 | Msa1352140 | 0.837529 | 4.926682e-57 | -8.615850e-47 |
| Msa1186030 | Msa1352140 | 0.812852 | 3.441060e-51 | -8.615850e-47 |
| Msa0573500 | Msa1352140 | 0.819053 | 1.421541e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352140 | MtrunA17_Chr8g0389351 | 97.541 | 122 | 3 | 0 | 154 | 275 | 1 | 122 | 5.19e-86 | 252 |
| Msa1352140 | MtrunA17_Chr8g0389351 | 72.973 | 111 | 30 | 0 | 47 | 157 | 3 | 113 | 1.32e-57 | 180 |
| Msa1352140 | MtrunA17_Chr8g0389341 | 92.857 | 112 | 8 | 0 | 46 | 157 | 5 | 116 | 2.07e-73 | 220 |
| Msa1352140 | MtrunA17_Chr8g0389341 | 78.049 | 123 | 27 | 0 | 153 | 275 | 3 | 125 | 9.21e-70 | 211 |
| Msa1352140 | MtrunA17_Chr2g0330541 | 61.905 | 126 | 48 | 0 | 150 | 275 | 92 | 217 | 2.15e-53 | 172 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1352140 | AT4G26210.2 | 82.500 | 120 | 21 | 0 | 154 | 273 | 1 | 120 | 5.55e-70 | 212 |
| Msa1352140 | AT4G26210.2 | 67.568 | 111 | 36 | 0 | 47 | 157 | 3 | 113 | 1.25e-52 | 167 |
| Msa1352140 | AT4G26210.1 | 82.500 | 120 | 21 | 0 | 154 | 273 | 1 | 120 | 5.55e-70 | 212 |
| Msa1352140 | AT4G26210.1 | 67.568 | 111 | 36 | 0 | 47 | 157 | 3 | 113 | 1.25e-52 | 167 |
| Msa1352140 | AT4G29480.1 | 80.000 | 120 | 24 | 0 | 154 | 273 | 1 | 120 | 1.82e-68 | 208 |
| Msa1352140 | AT4G29480.1 | 69.369 | 111 | 34 | 0 | 47 | 157 | 3 | 113 | 6.06e-54 | 171 |
| Msa1352140 | AT2G19680.1 | 81.667 | 120 | 22 | 0 | 154 | 273 | 1 | 120 | 2.16e-67 | 205 |
| Msa1352140 | AT2G19680.1 | 67.568 | 111 | 36 | 0 | 47 | 157 | 3 | 113 | 5.03e-52 | 166 |
| Msa1352140 | AT2G19680.2 | 81.667 | 120 | 22 | 0 | 154 | 273 | 1 | 120 | 2.16e-67 | 205 |
| Msa1352140 | AT2G19680.2 | 67.568 | 111 | 36 | 0 | 47 | 157 | 3 | 113 | 5.03e-52 | 166 |
Find 68 sgRNAs with CRISPR-Local
Find 443 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATAAATGTCACAAATTT+TGG | 0.061126 | tig0012579:+55543 | Msa1352140:three_prime_UTR |
| TTCCATGCTTAGTTATAAAT+TGG | 0.149886 | tig0012579:-48791 | None:intergenic |
| TTCCATGTTTCGACACAAAT+TGG | 0.188882 | tig0012579:-52692 | None:intergenic |
| CGGTTCGTTGTGAGGCCTTC+TGG | 0.193200 | tig0012579:+55086 | Msa1352140:CDS |
| TTGATTATGTCAAGCATTTA+TGG | 0.216096 | tig0012579:+55116 | Msa1352140:CDS |
| TTGATTATGTCAAGCAAATA+TGG | 0.268577 | tig0012579:+50524 | Msa1352140:CDS |
| GAGGAACAGGCAAGACTTAA+AGG | 0.283541 | tig0012579:+55138 | Msa1352140:CDS |
| GCAGGCATTGCTGCTTTGTT+TGG | 0.306097 | tig0012579:+55169 | Msa1352140:CDS |
| CATTGCTGCTTTGTTTGGCT+TGG | 0.320848 | tig0012579:+55174 | Msa1352140:CDS |
| TGAAAGGACTCGCAACGATT+TGG | 0.343521 | tig0012579:-50493 | None:intergenic |
| AAAACCATGCATAGCATTCC+AGG | 0.362552 | tig0012579:-50600 | None:intergenic |
| AAACGACATTGCGCCAATAT+AGG | 0.378373 | tig0012579:-55300 | None:intergenic |
| TCCATGCTTAGTTATAAATT+GGG | 0.411328 | tig0012579:-48790 | None:intergenic |
| TCAAGCATTTATGGAGGAAC+AGG | 0.424738 | tig0012579:+55125 | Msa1352140:CDS |
| TCCATGTTTCGACACAAATT+GGG | 0.433923 | tig0012579:-52691 | None:intergenic |
| GAAGAACAAGGAATACATTC+AGG | 0.438061 | tig0012579:+48839 | Msa1352140:CDS |
| CTTATATCATGTTGGAATGT+TGG | 0.442493 | tig0012579:+55474 | Msa1352140:three_prime_UTR |
| TGGCATTTCTCTACTGTAGC+AGG | 0.457610 | tig0012579:-48864 | None:intergenic |
| TTCTTACCACAAGCAGCTGT+TGG | 0.459464 | tig0012579:+48815 | Msa1352140:CDS |
| GAATGAATAGACGCAGTAAT+CGG | 0.467972 | tig0012579:-48068 | None:intergenic |
| TCGTTGCGAGTCCTTTCATA+AGG | 0.471623 | tig0012579:+50498 | Msa1352140:CDS |
| TGGTTACTACAAGCAATTGT+TGG | 0.474911 | tig0012579:+52716 | Msa1352140:CDS |
| TCCATCCCGCTTCAAGTACA+AGG | 0.478320 | tig0012579:-55437 | None:intergenic |
| GGAAGGGGATTTACTTTCAC+CGG | 0.482572 | tig0012579:+55232 | Msa1352140:CDS |
| TTAGAATGTTGCAGATTCAA+TGG | 0.487760 | tig0012579:+52626 | Msa1352140:intron |
| TATTGTGCTGGTGAGATTGT+TGG | 0.487898 | tig0012579:+55211 | Msa1352140:CDS |
| GACTTAAAGGTTGAAGATGC+AGG | 0.493818 | tig0012579:+55151 | Msa1352140:CDS |
| CAGCATTCCGGTTCGTTGTG+AGG | 0.494395 | tig0012579:+55078 | Msa1352140:intron |
| AACACACATCACACAATCCT+TGG | 0.494909 | tig0012579:+48005 | Msa1352140:CDS |
| TTTGTGTCGAAACATGGAAC+TGG | 0.497463 | tig0012579:+52696 | Msa1352140:CDS |
| CAGAAGGCCTCACAACGAAC+CGG | 0.500486 | tig0012579:-55085 | None:intergenic |
| TTGCATTTCTCAATAGTAGC+AGG | 0.501942 | tig0012579:-52765 | None:intergenic |
| TTCAATGGCGTCGAAGTTGA+AGG | 0.508306 | tig0012579:+52641 | Msa1352140:CDS |
| TACTTTACACACGCCTTGCT+AGG | 0.522831 | tig0012579:+52805 | Msa1352140:CDS |
| AGTAGAGAAATGCCAACTTC+TGG | 0.523939 | tig0012579:+48872 | Msa1352140:CDS |
| GCTGGTGAGATTGTTGGAAG+GGG | 0.524753 | tig0012579:+55217 | Msa1352140:CDS |
| ATAGTTGCTTGGCCAGAAGT+TGG | 0.524773 | tig0012579:-48884 | None:intergenic |
| TCCCAATTTATAACTAAGCA+TGG | 0.525968 | tig0012579:+48789 | Msa1352140:CDS |
| TGCTATGCATGGTATTGTGC+TGG | 0.532565 | tig0012579:+55199 | Msa1352140:CDS |
| TGCTGGTGAGATTGTTGGAA+GGG | 0.539629 | tig0012579:+55216 | Msa1352140:CDS |
| ATAAATTATATAACCTAGCA+AGG | 0.541358 | tig0012579:-52818 | None:intergenic |
| TCCCAATTTGTGTCGAAACA+TGG | 0.545137 | tig0012579:+52690 | Msa1352140:CDS |
| TCAAGTACAAGGGGTTATTG+AGG | 0.546171 | tig0012579:-55426 | None:intergenic |
| CCCTTGTACTTGAAGCGGGA+TGG | 0.546235 | tig0012579:+55436 | Msa1352140:three_prime_UTR |
| ATAATCAAGTTCCTTATGAA+AGG | 0.546893 | tig0012579:-50509 | None:intergenic |
| TAACCCCTTGTACTTGAAGC+GGG | 0.552918 | tig0012579:+55432 | Msa1352140:three_prime_UTR |
| TCGAATATGGGCATTCCGCA+TGG | 0.572388 | tig0012579:+55330 | Msa1352140:three_prime_UTR |
| GGTTAAAATAAAACCTAGCA+AGG | 0.573767 | tig0012579:-48917 | None:intergenic |
| GCGAGTGTAAAATAGTTGCT+TGG | 0.582756 | tig0012579:-48895 | None:intergenic |
| TCTTCTCCAACAGCTGCTTG+TGG | 0.584533 | tig0012579:-48821 | None:intergenic |
| TCGTTGTGAGGCCTTCTGGA+AGG | 0.586771 | tig0012579:+55090 | Msa1352140:CDS |
| GCAGCGTCGCGAGGTAGCAG+CGG | 0.590854 | tig0012579:+48035 | Msa1352140:CDS |
| TTGGCCTGGAATGCTATGCA+TGG | 0.593962 | tig0012579:+50596 | Msa1352140:CDS |
| ATAACCCCTTGTACTTGAAG+CGG | 0.602589 | tig0012579:+55431 | Msa1352140:three_prime_UTR |
| TTGGCTTGGAATGCTATGCA+TGG | 0.606806 | tig0012579:+55188 | Msa1352140:CDS |
| GATTTGAAGATTGAAGATGC+AGG | 0.608817 | tig0012579:+50559 | Msa1352140:CDS |
| ATAATCAAGTTCCTTCCAGA+AGG | 0.620068 | tig0012579:-55101 | None:intergenic |
| ATTATGTCAAGCATTTATGG+AGG | 0.623689 | tig0012579:+55119 | Msa1352140:CDS |
| CCATCCCGCTTCAAGTACAA+GGG | 0.632676 | tig0012579:-55436 | None:intergenic |
| GTGCTGGTGAGATTGTTGGA+AGG | 0.633241 | tig0012579:+55215 | Msa1352140:CDS |
| TTGGAATGTTGGAAAGCTTG+TGG | 0.638208 | tig0012579:+55485 | Msa1352140:three_prime_UTR |
| GCAGCTGTTGGAGAAGAACA+AGG | 0.648148 | tig0012579:+48827 | Msa1352140:CDS |
| ACTGCGTCTATTCATTCACA+AGG | 0.658506 | tig0012579:+48074 | Msa1352140:CDS |
| AAACATGGTTGAGTAACTAG+TGG | 0.662261 | tig0012579:+55389 | Msa1352140:three_prime_UTR |
| TGATATAAGAGCAAAACGCA+AGG | 0.664838 | tig0012579:-55460 | None:intergenic |
| CATCCCGCTTCAAGTACAAG+GGG | 0.677730 | tig0012579:-55435 | None:intergenic |
| CAGAATAACATATTGCCATG+CGG | 0.684975 | tig0012579:-55345 | None:intergenic |
| GCGACGCTGCAAAAGCACCA+AGG | 0.703860 | tig0012579:-48022 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATTAAAATAAAAAAT+AGG | + | tig0012579:53564-53583 | Msa1352140:intron | 0.0% |
| !! | TGAAAATTTATTGAATATTT+AGG | + | tig0012579:48283-48302 | Msa1352140:intron | 10.0% |
| !! | GAAAATTTATTGAATATTTA+GGG | + | tig0012579:48284-48303 | Msa1352140:intron | 10.0% |
| !!! | GATTTTATAAAATTAACTTA+TGG | + | tig0012579:48502-48521 | Msa1352140:intron | 10.0% |
| !! | AGTTTAAAAAAAAAAAATTG+AGG | - | tig0012579:49452-49471 | None:intergenic | 10.0% |
| !! | AAATGATTAAAAAAAATTAC+AGG | - | tig0012579:50919-50938 | None:intergenic | 10.0% |
| !!! | TAATTCATCATTTTTTTAAA+AGG | - | tig0012579:51046-51065 | None:intergenic | 10.0% |
| !! | TTTAAAAAAATGATGAATTA+AGG | + | tig0012579:51046-51065 | Msa1352140:intron | 10.0% |
| !!! | AATTATTTAGTGTTTTTTTT+AGG | - | tig0012579:51995-52014 | None:intergenic | 10.0% |
| !! | GAAATATATAAATGTAAATT+AGG | + | tig0012579:52065-52084 | Msa1352140:intron | 10.0% |
| !!! | TACTTTTTATCTAAAAAATA+TGG | - | tig0012579:52107-52126 | None:intergenic | 10.0% |
| !!! | TTTTAATAGTTATTCTTATT+AGG | + | tig0012579:53274-53293 | Msa1352140:intron | 10.0% |
| !! | AAATTAAAATAAAAAATAGG+TGG | + | tig0012579:53567-53586 | Msa1352140:intron | 10.0% |
| !! | AAAAAAAAATATATTATGTC+AGG | - | tig0012579:54328-54347 | None:intergenic | 10.0% |
| !!! | TTTAGGTATTATTTTTTTGT+CGG | + | tig0012579:48365-48384 | Msa1352140:intron | 15.0% |
| !! | TAGATTTATTAATAAGGAAA+GGG | - | tig0012579:48941-48960 | None:intergenic | 15.0% |
| !!! | TGTTTTATTAAAGAGTTAAA+AGG | + | tig0012579:49471-49490 | Msa1352140:intron | 15.0% |
| !!! | GTTTTATTAAAGAGTTAAAA+GGG | + | tig0012579:49472-49491 | Msa1352140:intron | 15.0% |
| !! | TCTTTAATTATTAAGTATGA+TGG | + | tig0012579:49622-49641 | Msa1352140:intron | 15.0% |
| !!! | TTATAACATTATGTTGATTT+TGG | + | tig0012579:50741-50760 | Msa1352140:intron | 15.0% |
| !!! | TATAACATTATGTTGATTTT+GGG | + | tig0012579:50742-50761 | Msa1352140:intron | 15.0% |
| !! | TAAATAAATACTATTACTGT+AGG | + | tig0012579:51312-51331 | Msa1352140:intron | 15.0% |
| !! | AACAAAACAAAAATTAAAAC+GGG | - | tig0012579:51533-51552 | None:intergenic | 15.0% |
| !! | GAACAAAACAAAAATTAAAA+CGG | - | tig0012579:51534-51553 | None:intergenic | 15.0% |
| !! | AATCAAATTATTAGTTGAAA+AGG | - | tig0012579:51972-51991 | None:intergenic | 15.0% |
| !! | AAGAATAATATAAAATCTTG+TGG | - | tig0012579:52451-52470 | None:intergenic | 15.0% |
| !!! | AAAATAAATGTCACAAATTT+TGG | + | tig0012579:55543-55562 | Msa1352140:three_prime_UTR | 15.0% |
| !! | TTCATCTATGAAATAAAGAA+CGG | - | tig0012579:48117-48136 | None:intergenic | 20.0% |
| !!! | AACTTTGAAGAGATAAAAAT+TGG | - | tig0012579:48248-48267 | None:intergenic | 20.0% |
| !!! | TGTTTAGATTAGCTAAATTT+AGG | + | tig0012579:48348-48367 | Msa1352140:intron | 20.0% |
| !! | CTAGATTTATTAATAAGGAA+AGG | - | tig0012579:48942-48961 | None:intergenic | 20.0% |
| !! | AAAAATCACTTACAATCAAT+AGG | - | tig0012579:49008-49027 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGCATTTTGATGT+CGG | + | tig0012579:49028-49047 | Msa1352140:intron | 20.0% |
| !! | AATAGAAACAAACTAAAAGT+AGG | - | tig0012579:49557-49576 | None:intergenic | 20.0% |
| !! | TAGAAAAATACACGAAATTA+TGG | - | tig0012579:49651-49670 | None:intergenic | 20.0% |
| !! | TATACAGTATAAAAGATGAT+CGG | + | tig0012579:49809-49828 | Msa1352140:intron | 20.0% |
| !! | GTCGTATATTTCAAATATTA+AGG | - | tig0012579:51160-51179 | None:intergenic | 20.0% |
| !!! | TCGTTAATTTGATAAAAACA+AGG | - | tig0012579:51502-51521 | None:intergenic | 20.0% |
| !! | AAAGAAAAATATCAATCTTG+AGG | + | tig0012579:51650-51669 | Msa1352140:intron | 20.0% |
| !! | AAGAAAAATATCAATCTTGA+GGG | + | tig0012579:51651-51670 | Msa1352140:intron | 20.0% |
| !!! | CATTTTGGAGTAATTTTTTT+TGG | + | tig0012579:51707-51726 | Msa1352140:intron | 20.0% |
| !! | TTTAATTCATTAACCAAACT+CGG | - | tig0012579:51818-51837 | None:intergenic | 20.0% |
| !! | TTAAAAATTTACCTGAAAAC+AGG | + | tig0012579:52186-52205 | Msa1352140:intron | 20.0% |
| !! | TAAAAATTTACCTGAAAACA+GGG | + | tig0012579:52187-52206 | Msa1352140:intron | 20.0% |
| !! | AGGAATGCAAAAAAAAAAAA+GGG | - | tig0012579:52482-52501 | None:intergenic | 20.0% |
| !!! | ATATTCGGTAATTTTATGAA+GGG | - | tig0012579:52553-52572 | None:intergenic | 20.0% |
| !! | ATAAAATTACCGAATATGTA+GGG | + | tig0012579:52556-52575 | Msa1352140:intron | 20.0% |
| !! | ATAAATTATATAACCTAGCA+AGG | - | tig0012579:52821-52840 | None:intergenic | 20.0% |
| !! | CAATATATTAAGAAGAAAGT+TGG | - | tig0012579:52847-52866 | None:intergenic | 20.0% |
| !! | TGTTTAATGCGAAAAAAAAA+AGG | + | tig0012579:53003-53022 | Msa1352140:intron | 20.0% |
| !! | TTAATCATTAGAAAGAAAGT+TGG | + | tig0012579:53772-53791 | Msa1352140:intron | 20.0% |
| !! | TAATCATTAGAAAGAAAGTT+GGG | + | tig0012579:53773-53792 | Msa1352140:intron | 20.0% |
| !!! | AAGGAGTGTAAATAAAATAA+AGG | + | tig0012579:53878-53897 | Msa1352140:intron | 20.0% |
| !! | AGTGTAAATAAAATAAAGGA+AGG | + | tig0012579:53882-53901 | Msa1352140:intron | 20.0% |
| !!! | CCATTCATTTTCTTTAAAAT+TGG | - | tig0012579:54547-54566 | None:intergenic | 20.0% |
| !!! | CCAATTTTAAAGAAAATGAA+TGG | + | tig0012579:54544-54563 | Msa1352140:intron | 20.0% |
| !!! | ATTTTAAAGAAAATGAATGG+TGG | + | tig0012579:54547-54566 | Msa1352140:intron | 20.0% |
| !!! | ACATTTTTTATCTTGACATA+TGG | + | tig0012579:54583-54602 | Msa1352140:intron | 20.0% |
| !! | TATAAACAATCTATGGATAT+CGG | - | tig0012579:54750-54769 | None:intergenic | 20.0% |
| !! | TTATGAGTATAAACAATCTA+TGG | - | tig0012579:54757-54776 | None:intergenic | 20.0% |
| !!! | AACTAGTTTTAAAATGATGT+TGG | - | tig0012579:54873-54892 | None:intergenic | 20.0% |
| !!! | ATTTTTACTTTGAGAAAACA+TGG | + | tig0012579:55374-55393 | Msa1352140:three_prime_UTR | 20.0% |
| !!! | ACATTTATTTTGAAAATTGC+GGG | - | tig0012579:55534-55553 | None:intergenic | 20.0% |
| !!! | GACATTTATTTTGAAAATTG+CGG | - | tig0012579:55535-55554 | None:intergenic | 20.0% |
| ! | TTGAAGAGATAAAAATTGGT+CGG | - | tig0012579:48244-48263 | None:intergenic | 25.0% |
| ! | TGAACAATTATAATTCGTGT+TGG | + | tig0012579:48426-48445 | Msa1352140:intron | 25.0% |
| ! | AAAGTAACATCAATGCATAA+TGG | + | tig0012579:48577-48596 | Msa1352140:intron | 25.0% |
| !! | TTTAAAGTGACTTATCAGTT+AGG | + | tig0012579:48646-48665 | Msa1352140:intron | 25.0% |
| ! | CAAAAGACAAATGTACAATA+AGG | - | tig0012579:48724-48743 | None:intergenic | 25.0% |
| ! | TCCATGCTTAGTTATAAATT+GGG | - | tig0012579:48793-48812 | None:intergenic | 25.0% |
| ! | TTCCATGCTTAGTTATAAAT+TGG | - | tig0012579:48794-48813 | None:intergenic | 25.0% |
| ! | TCCTTATTAATAAATCTAGC+TGG | + | tig0012579:48943-48962 | Msa1352140:intron | 25.0% |
| ! | TCCAGCTAGATTTATTAATA+AGG | - | tig0012579:48947-48966 | None:intergenic | 25.0% |
| ! | GATTGAACAATCAGAATATT+AGG | - | tig0012579:49133-49152 | None:intergenic | 25.0% |
| !!! | GTTTTGTTGTTTTGTACTTT+AGG | + | tig0012579:49598-49617 | Msa1352140:intron | 25.0% |
| !! | ATATACCACTATAGCATTTT+AGG | + | tig0012579:49736-49755 | Msa1352140:intron | 25.0% |
| !! | TATACCACTATAGCATTTTA+GGG | + | tig0012579:49737-49756 | Msa1352140:intron | 25.0% |
| ! | ATACAGTATAAAAGATGATC+GGG | + | tig0012579:49810-49829 | Msa1352140:intron | 25.0% |
| ! | TTGTACTAAATAGCTTATTG+TGG | - | tig0012579:49967-49986 | None:intergenic | 25.0% |
| ! | ATAGCTAAAAGAAGAAACTA+CGG | - | tig0012579:50388-50407 | None:intergenic | 25.0% |
| ! | ATAATCAAGTTCCTTATGAA+AGG | - | tig0012579:50512-50531 | None:intergenic | 25.0% |
| ! | TTGATTATGTCAAGCAAATA+TGG | + | tig0012579:50524-50543 | Msa1352140:CDS | 25.0% |
| ! | CTAAATCGAACATTATAAAG+TGG | - | tig0012579:50685-50704 | None:intergenic | 25.0% |
| ! | CTTTATAATGTTCGATTTAG+CGG | + | tig0012579:50685-50704 | Msa1352140:intron | 25.0% |
| ! | TTTATAATGTTCGATTTAGC+GGG | + | tig0012579:50686-50705 | Msa1352140:intron | 25.0% |
| ! | TTTAAACAAGCTGAGTTATT+TGG | + | tig0012579:51107-51126 | Msa1352140:intron | 25.0% |
| ! | TTAAACAAGCTGAGTTATTT+GGG | + | tig0012579:51108-51127 | Msa1352140:intron | 25.0% |
| ! | TCTATCTAAACATTTAGTAG+CGG | - | tig0012579:51413-51432 | None:intergenic | 25.0% |
| !!! | ACTTTTGAGACAAAAATGTT+GGG | - | tig0012579:51600-51619 | None:intergenic | 25.0% |
| !! | GGGACTATATATAATCATTT+TGG | + | tig0012579:51692-51711 | Msa1352140:intron | 25.0% |
| ! | AAAAATTTACCTGAAAACAG+GGG | + | tig0012579:52188-52207 | Msa1352140:intron | 25.0% |
| ! | TTGAGAAAAAAAAAGAAGAG+TGG | + | tig0012579:52217-52236 | Msa1352140:intron | 25.0% |
| ! | TGAGAAAAAAAAAGAAGAGT+GGG | + | tig0012579:52218-52237 | Msa1352140:intron | 25.0% |
| ! | GAGGAATGCAAAAAAAAAAA+AGG | - | tig0012579:52483-52502 | None:intergenic | 25.0% |
| !! | CATATTCGGTAATTTTATGA+AGG | - | tig0012579:52554-52573 | None:intergenic | 25.0% |
| ! | CATAAAATTACCGAATATGT+AGG | + | tig0012579:52555-52574 | Msa1352140:intron | 25.0% |
| ! | GAGAAGAAATGAAAAAACAT+TGG | - | tig0012579:53054-53073 | None:intergenic | 25.0% |
| ! | TTTGCTTCAAATAATTGCTT+TGG | + | tig0012579:53343-53362 | Msa1352140:intron | 25.0% |
| ! | AAAATTGTCTTACTCTTCAT+TGG | - | tig0012579:53637-53656 | None:intergenic | 25.0% |
| ! | AAGGATAATTCTATAGTCAA+AGG | + | tig0012579:53901-53920 | Msa1352140:intron | 25.0% |
| ! | TAACTCTAAATCTCTCATAA+TGG | - | tig0012579:53959-53978 | None:intergenic | 25.0% |
| ! | ATCAAACTTTATGAAAGACT+TGG | + | tig0012579:54214-54233 | Msa1352140:intron | 25.0% |
| ! | TATATTATGTCAGGTTACTT+TGG | - | tig0012579:54319-54338 | None:intergenic | 25.0% |
| !! | TTTACCAAAGTCACATTTTT+AGG | + | tig0012579:54346-54365 | Msa1352140:intron | 25.0% |
| !!! | TCACATTTTTAGGAGTAAAT+GGG | + | tig0012579:54356-54375 | Msa1352140:intron | 25.0% |
| !!! | CAAGTTGACTATTTATTTTG+TGG | - | tig0012579:54519-54538 | None:intergenic | 25.0% |
| ! | CAAACATGAAAAAACTAAAG+TGG | - | tig0012579:54612-54631 | None:intergenic | 25.0% |
| ! | CTTCATAATCTATCATTGTA+TGG | + | tig0012579:54642-54661 | Msa1352140:intron | 25.0% |
| ! | TGTGAAGATTTACAATAATG+TGG | + | tig0012579:54706-54725 | Msa1352140:intron | 25.0% |
| !! | TTTAAAATGATGTTGGAATG+TGG | - | tig0012579:54866-54885 | None:intergenic | 25.0% |
| ! | TTTAGCTAATTCACTAAAGA+AGG | - | tig0012579:54929-54948 | None:intergenic | 25.0% |
| ! | TGAATTAGCTAAACAATCAT+GGG | + | tig0012579:54936-54955 | Msa1352140:intron | 25.0% |
| !! | AATTAAATTTTGCAGCATTC+CGG | + | tig0012579:55066-55085 | Msa1352140:intron | 25.0% |
| ! | TTGATTATGTCAAGCATTTA+TGG | + | tig0012579:55116-55135 | Msa1352140:CDS | 25.0% |
| ATGAAATAAAGAACGGAAGA+AGG | - | tig0012579:48110-48129 | None:intergenic | 30.0% | |
| !!! | CTATTGTTACTCTCGTTTTT+TGG | + | tig0012579:48161-48180 | Msa1352140:intron | 30.0% |
| !!! | TCTCTTCAAAGTTTTGTTGT+TGG | + | tig0012579:48255-48274 | Msa1352140:intron | 30.0% |
| ! | TGCATTTAGAACCCAAATTT+AGG | + | tig0012579:48316-48335 | Msa1352140:intron | 30.0% |
| CATGCTAGAAACCTAAATTT+GGG | - | tig0012579:48330-48349 | None:intergenic | 30.0% | |
| ACATGCTAGAAACCTAAATT+TGG | - | tig0012579:48331-48350 | None:intergenic | 30.0% | |
| TTCAAGAGTGAAACTCAAAT+TGG | - | tig0012579:48410-48429 | None:intergenic | 30.0% | |
| CTATAACTACGTATATCTTG+AGG | + | tig0012579:48604-48623 | Msa1352140:intron | 30.0% | |
| CAAATGTACAATAAGGTACA+AGG | - | tig0012579:48717-48736 | None:intergenic | 30.0% | |
| TCCCAATTTATAACTAAGCA+TGG | + | tig0012579:48789-48808 | Msa1352140:CDS | 30.0% | |
| GGTTAAAATAAAACCTAGCA+AGG | - | tig0012579:48920-48939 | None:intergenic | 30.0% | |
| TCGCTAATATATGTACTTGT+TGG | + | tig0012579:48982-49001 | Msa1352140:intron | 30.0% | |
| ! | TTTTCTCCCTTGTCAATAAA+GGG | - | tig0012579:49081-49100 | None:intergenic | 30.0% |
| ! | ATTTTCTCCCTTGTCAATAA+AGG | - | tig0012579:49082-49101 | None:intergenic | 30.0% |
| ACCATTAACTTTGTAGTTCA+GGG | - | tig0012579:49174-49193 | None:intergenic | 30.0% | |
| TATAGTGGTATATCGAATAG+CGG | - | tig0012579:49729-49748 | None:intergenic | 30.0% | |
| ! | ATACCACTATAGCATTTTAG+GGG | + | tig0012579:49738-49757 | Msa1352140:intron | 30.0% |
| TAAGACTTCATTGCTAAGAA+AGG | - | tig0012579:49858-49877 | None:intergenic | 30.0% | |
| GTGAACTCTAAACTAACTAA+GGG | - | tig0012579:49900-49919 | None:intergenic | 30.0% | |
| TGTGAACTCTAAACTAACTA+AGG | - | tig0012579:49901-49920 | None:intergenic | 30.0% | |
| TTGTACTAAATAGCGTATTG+CGG | - | tig0012579:50083-50102 | None:intergenic | 30.0% | |
| TACAAAATACTGTGCAATAG+TGG | + | tig0012579:50098-50117 | Msa1352140:intron | 30.0% | |
| TGTTGAATTGAAACATCAGA+AGG | + | tig0012579:50283-50302 | Msa1352140:intron | 30.0% | |
| TGTTGAATTGAAACATCAGA+TGG | + | tig0012579:50283-50302 | Msa1352140:intron | 30.0% | |
| ! | ATTTGTCATTCTTTTCTGTG+AGG | + | tig0012579:50778-50797 | Msa1352140:intron | 30.0% |
| ! | TCTTTTCTGTGAGGAAAAAA+AGG | + | tig0012579:50787-50806 | Msa1352140:intron | 30.0% |
| AAAAAAGGTTGAGAAACTAG+TGG | + | tig0012579:50802-50821 | Msa1352140:intron | 30.0% | |
| TTATCATGTTAGAAAGCTAG+CGG | + | tig0012579:50882-50901 | Msa1352140:intron | 30.0% | |
| GTTGTCATTACGATGAATTA+AGG | + | tig0012579:51018-51037 | Msa1352140:intron | 30.0% | |
| AATACTGAATATGTAGTACC+AGG | + | tig0012579:51081-51100 | Msa1352140:intron | 30.0% | |
| ATACTGAATATGTAGTACCA+GGG | + | tig0012579:51082-51101 | Msa1352140:intron | 30.0% | |
| CTATCTAAACATTTAGTAGC+GGG | - | tig0012579:51412-51431 | None:intergenic | 30.0% | |
| TGAGACAATTGGAATTATTG+TGG | - | tig0012579:51562-51581 | None:intergenic | 30.0% | |
| !!! | CACTTTTGAGACAAAAATGT+TGG | - | tig0012579:51601-51620 | None:intergenic | 30.0% |
| GGTCAAAATTCATCTTCTTT+GGG | + | tig0012579:51672-51691 | Msa1352140:intron | 30.0% | |
| AAAATTTACCTGAAAACAGG+GGG | + | tig0012579:52189-52208 | Msa1352140:intron | 30.0% | |
| GAGAAAAAAAAAGAAGAGTG+GGG | + | tig0012579:52219-52238 | Msa1352140:intron | 30.0% | |
| AGAAAAAAAAAGAAGAGTGG+GGG | + | tig0012579:52220-52239 | Msa1352140:intron | 30.0% | |
| ! | ATATTGACTGACCAAAAAAG+AGG | + | tig0012579:52317-52336 | Msa1352140:intron | 30.0% |
| !!! | TCTTCCTAAAACCTCTTTTT+TGG | - | tig0012579:52331-52350 | None:intergenic | 30.0% |
| TATGATTGATTGATGGAAGA+AGG | - | tig0012579:52425-52444 | None:intergenic | 30.0% | |
| TCAAGAAAACCCTACATATT+CGG | - | tig0012579:52568-52587 | None:intergenic | 30.0% | |
| TTAGAATGTTGCAGATTCAA+TGG | + | tig0012579:52626-52645 | Msa1352140:intron | 30.0% | |
| AGCAGTGATATACAGTTAAA+GGG | - | tig0012579:53091-53110 | None:intergenic | 30.0% | |
| AAGCAGTGATATACAGTTAA+AGG | - | tig0012579:53092-53111 | None:intergenic | 30.0% | |
| GTAAGTCAACAACAGATAAA+GGG | - | tig0012579:53212-53231 | None:intergenic | 30.0% | |
| GAATAATGTAACGTAAGAAG+TGG | - | tig0012579:53525-53544 | None:intergenic | 30.0% | |
| GGAATTAATCAAGACAAGAT+AGG | + | tig0012579:53742-53761 | Msa1352140:intron | 30.0% | |
| TAATCAAGACAAGATAGGAT+AGG | + | tig0012579:53747-53766 | Msa1352140:intron | 30.0% | |
| TTCTATAGTCAAAGGTAGAA+TGG | + | tig0012579:53909-53928 | Msa1352140:intron | 30.0% | |
| TCTATAGTCAAAGGTAGAAT+GGG | + | tig0012579:53910-53929 | Msa1352140:intron | 30.0% | |
| ! | TATGAGAGATTTAGAGTTAC+TGG | + | tig0012579:53960-53979 | Msa1352140:intron | 30.0% |
| TGGTTGGATTTAATTCATAC+AGG | + | tig0012579:53987-54006 | Msa1352140:intron | 30.0% | |
| GGTTGGATTTAATTCATACA+GGG | + | tig0012579:53988-54007 | Msa1352140:intron | 30.0% | |
| CATCACTTATAGTTAAACCA+AGG | + | tig0012579:54272-54291 | Msa1352140:intron | 30.0% | |
| CTTATAGTTAAACCAAGGTT+TGG | + | tig0012579:54277-54296 | Msa1352140:intron | 30.0% | |
| TACTCCTAAAAATGTGACTT+TGG | - | tig0012579:54353-54372 | None:intergenic | 30.0% | |
| !! | GTCACATTTTTAGGAGTAAA+TGG | + | tig0012579:54355-54374 | Msa1352140:intron | 30.0% |
| GGTAAAACAAAAAATGCCTT+GGG | + | tig0012579:54401-54420 | Msa1352140:intron | 30.0% | |
| ACCACAGAAAACAGAAAAAA+TGG | - | tig0012579:54432-54451 | None:intergenic | 30.0% | |
| TAAAGCAAAAGGACTTTAAG+TGG | + | tig0012579:54457-54476 | Msa1352140:intron | 30.0% | |
| AAAAGGACTTTAAGTGGTAT+GGG | + | tig0012579:54463-54482 | Msa1352140:intron | 30.0% | |
| !! | AAATGAATGGTGGTTGTTTT+TGG | + | tig0012579:54557-54576 | Msa1352140:intron | 30.0% |
| TTATGAGCTGATCATATTCA+AGG | - | tig0012579:54680-54699 | None:intergenic | 30.0% | |
| TTCAAACATCAAACAGAACT+GGG | - | tig0012579:54824-54843 | None:intergenic | 30.0% | |
| GTGAATTAGCTAAACAATCA+TGG | + | tig0012579:54935-54954 | Msa1352140:intron | 30.0% | |
| GAATTAGCTAAACAATCATG+GGG | + | tig0012579:54937-54956 | Msa1352140:intron | 30.0% | |
| !! | AGAAGCACTGAAAACTAAAT+TGG | - | tig0012579:55022-55041 | None:intergenic | 30.0% |
| ATTATGTCAAGCATTTATGG+AGG | + | tig0012579:55119-55138 | Msa1352140:CDS | 30.0% | |
| ! | AGATTTTTGCAGTCCTATAT+TGG | + | tig0012579:55287-55306 | Msa1352140:three_prime_UTR | 30.0% |
| ! | TCGTTTTATACACTCGAATA+TGG | + | tig0012579:55317-55336 | Msa1352140:three_prime_UTR | 30.0% |
| ! | CGTTTTATACACTCGAATAT+GGG | + | tig0012579:55318-55337 | Msa1352140:three_prime_UTR | 30.0% |
| ! | GTTTTGCTCTTATATCATGT+TGG | + | tig0012579:55466-55485 | Msa1352140:three_prime_UTR | 30.0% |
| CTTATATCATGTTGGAATGT+TGG | + | tig0012579:55474-55493 | Msa1352140:three_prime_UTR | 30.0% | |
| GAATGAATAGACGCAGTAAT+CGG | - | tig0012579:48071-48090 | None:intergenic | 35.0% | |
| AAATAAAGAACGGAAGAAGG+AGG | - | tig0012579:48107-48126 | None:intergenic | 35.0% | |
| GAGAGAAATCAGATCTTAAG+AGG | - | tig0012579:48190-48209 | None:intergenic | 35.0% | |
| !!! | GGTATTATTTTTTTGTCGGC+TGG | + | tig0012579:48369-48388 | Msa1352140:intron | 35.0% |
| AAGTGACTTATCAGTTAGGA+CGG | + | tig0012579:48650-48669 | Msa1352140:intron | 35.0% | |
| TTAGGACGGAAGGAATAATA+TGG | + | tig0012579:48664-48683 | Msa1352140:intron | 35.0% | |
| ACGGAAGGAATAATATGGAT+GGG | + | tig0012579:48669-48688 | Msa1352140:intron | 35.0% | |
| GAAGAACAAGGAATACATTC+AGG | + | tig0012579:48839-48858 | Msa1352140:CDS | 35.0% | |
| CCATTAACTTTGTAGTTCAG+GGG | - | tig0012579:49173-49192 | None:intergenic | 35.0% | |
| GACCATTAACTTTGTAGTTC+AGG | - | tig0012579:49175-49194 | None:intergenic | 35.0% | |
| AGCCAATTACAGTGAATTTG+CGG | + | tig0012579:49380-49399 | Msa1352140:intron | 35.0% | |
| ATAGTGGTATATCGAATAGC+GGG | - | tig0012579:49728-49747 | None:intergenic | 35.0% | |
| AATCCCCTAAAATGCTATAG+TGG | - | tig0012579:49744-49763 | None:intergenic | 35.0% | |
| !! | ACTATAGCATTTTAGGGGAT+TGG | + | tig0012579:49743-49762 | Msa1352140:intron | 35.0% |
| CACTGTGAACTCTAAACTAA+GGG | - | tig0012579:49904-49923 | None:intergenic | 35.0% | |
| ACACTGTGAACTCTAAACTA+AGG | - | tig0012579:49905-49924 | None:intergenic | 35.0% | |
| AATATGACACTGTTGCATAG+TGG | + | tig0012579:50131-50150 | Msa1352140:intron | 35.0% | |
| TGTTGGATATCATAGAGTTC+AGG | + | tig0012579:50209-50228 | Msa1352140:intron | 35.0% | |
| ATCACATGAACCCTAATTCA+TGG | - | tig0012579:50235-50254 | None:intergenic | 35.0% | |
| TATTGATCAGAATTCCCATG+TGG | + | tig0012579:50344-50363 | Msa1352140:intron | 35.0% | |
| GATTTGAAGATTGAAGATGC+AGG | + | tig0012579:50559-50578 | Msa1352140:CDS | 35.0% | |
| GTTATAAATGACAGTACTCC+TGG | - | tig0012579:50728-50747 | None:intergenic | 35.0% | |
| TCAAATACAAGAGGTTACTG+AGG | - | tig0012579:50836-50855 | None:intergenic | 35.0% | |
| GTAACCTCTTGTATTTGAAG+CGG | + | tig0012579:50838-50857 | Msa1352140:intron | 35.0% | |
| ! | TAACCTCTTGTATTTGAAGC+GGG | + | tig0012579:50839-50858 | Msa1352140:intron | 35.0% |
| TACTGAATATGTAGTACCAG+GGG | + | tig0012579:51083-51102 | Msa1352140:intron | 35.0% | |
| !!! | AAACATTTAGTAGCGGGTTT+TGG | - | tig0012579:51406-51425 | None:intergenic | 35.0% |
| !! | GTATTTTTGTGCTTCTTGCT+AGG | + | tig0012579:51433-51452 | Msa1352140:intron | 35.0% |
| GGGTCAAAATTCATCTTCTT+TGG | + | tig0012579:51671-51690 | Msa1352140:intron | 35.0% | |
| GACAATTAATTCACCGAGTT+TGG | + | tig0012579:51802-51821 | Msa1352140:intron | 35.0% | |
| TCAACGAGCTAAATTTCTAC+TGG | - | tig0012579:51859-51878 | None:intergenic | 35.0% | |
| GAAAAAAAAAGAAGAGTGGG+GGG | + | tig0012579:52221-52240 | Msa1352140:intron | 35.0% | |
| TTCGTTTCGTCTCGAATATT+TGG | - | tig0012579:52273-52292 | None:intergenic | 35.0% | |
| ! | CTGACCAAAAAAGAGGTTTT+AGG | + | tig0012579:52324-52343 | Msa1352140:intron | 35.0% |
| GTGGAGTTATGATTGATTGA+TGG | - | tig0012579:52432-52451 | None:intergenic | 35.0% | |
| TTTGCATTCCTCTTTAGATC+TGG | + | tig0012579:52491-52510 | Msa1352140:intron | 35.0% | |
| TCCATGTTTCGACACAAATT+GGG | - | tig0012579:52694-52713 | None:intergenic | 35.0% | |
| TTCCATGTTTCGACACAAAT+TGG | - | tig0012579:52695-52714 | None:intergenic | 35.0% | |
| TGGTTACTACAAGCAATTGT+TGG | + | tig0012579:52716-52735 | Msa1352140:CDS | 35.0% | |
| TTGCATTTCTCAATAGTAGC+AGG | - | tig0012579:52768-52787 | None:intergenic | 35.0% | |
| TCTATGTTCATGTATGCTTG+TGG | + | tig0012579:52878-52897 | Msa1352140:intron | 35.0% | |
| TAGCATTTCAATGAGCAGTT+TGG | + | tig0012579:53113-53132 | Msa1352140:intron | 35.0% | |
| AAACCAAGGCTTCATAAACT+TGG | + | tig0012579:53166-53185 | Msa1352140:intron | 35.0% | |
| ACAGATAAAGGGTTATGGTT+TGG | - | tig0012579:53201-53220 | None:intergenic | 35.0% | |
| CAACAACAGATAAAGGGTTA+TGG | - | tig0012579:53206-53225 | None:intergenic | 35.0% | |
| CGTAAGTCAACAACAGATAA+AGG | - | tig0012579:53213-53232 | None:intergenic | 35.0% | |
| !! | TGAGCACGTTGATTTATGTT+TGG | + | tig0012579:53367-53386 | Msa1352140:intron | 35.0% |
| !! | TTAAGTTGGTTCACTATGGT+AGG | - | tig0012579:53440-53459 | None:intergenic | 35.0% |
| !! | TCAGTTAAGTTGGTTCACTA+TGG | - | tig0012579:53444-53463 | None:intergenic | 35.0% |
| TGCTCTACATTCAGTTAAGT+TGG | - | tig0012579:53454-53473 | None:intergenic | 35.0% | |
| TAATGTAACGTAAGAAGTGG+CGG | - | tig0012579:53522-53541 | None:intergenic | 35.0% | |
| TATCACTCCATCATTGTATC+TGG | - | tig0012579:53597-53616 | None:intergenic | 35.0% | |
| ! | ATACAATGATGGAGTGATAG+AGG | + | tig0012579:53598-53617 | Msa1352140:intron | 35.0% |
| AGTGTTGCAACAATGAGAAT+AGG | + | tig0012579:53715-53734 | Msa1352140:intron | 35.0% | |
| GCAACAATGAGAATAGGAAT+AGG | + | tig0012579:53721-53740 | Msa1352140:intron | 35.0% | |
| TCATTAGAAAGAAAGTTGGG+TGG | + | tig0012579:53776-53795 | Msa1352140:intron | 35.0% | |
| GAACTACAGTAGCATTACTA+AGG | + | tig0012579:53859-53878 | Msa1352140:intron | 35.0% | |
| ! | ATGGGATCAAGGAAAAGTAT+AGG | + | tig0012579:53928-53947 | Msa1352140:intron | 35.0% |
| ! | TTTTTCCCTGACAACTAGAT+GGG | - | tig0012579:54046-54065 | None:intergenic | 35.0% |
| TAGTTGTCAGGGAAAAACTT+TGG | + | tig0012579:54049-54068 | Msa1352140:intron | 35.0% | |
| ! | TTGATTTTGCTTCCAAACCT+TGG | - | tig0012579:54292-54311 | None:intergenic | 35.0% |
| ! | GGATTTTACCTCCTTCAAAT+GGG | + | tig0012579:54377-54396 | Msa1352140:intron | 35.0% |
| ! | GATTTTACCTCCTTCAAATG+GGG | + | tig0012579:54378-54397 | Msa1352140:intron | 35.0% |
| ! | ATTTTACCTCCTTCAAATGG+GGG | + | tig0012579:54379-54398 | Msa1352140:intron | 35.0% |
| GGGTAAAACAAAAAATGCCT+TGG | + | tig0012579:54400-54419 | Msa1352140:intron | 35.0% | |
| !!! | GCCATTTTTTCTGTTTTCTG+TGG | + | tig0012579:54428-54447 | Msa1352140:intron | 35.0% |
| TGTGGTTAGTGTAAAGCAAA+AGG | + | tig0012579:54446-54465 | Msa1352140:intron | 35.0% | |
| CAAAAGGACTTTAAGTGGTA+TGG | + | tig0012579:54462-54481 | Msa1352140:intron | 35.0% | |
| AAAGGACTTTAAGTGGTATG+GGG | + | tig0012579:54464-54483 | Msa1352140:intron | 35.0% | |
| GTTCAAACATCAAACAGAAC+TGG | - | tig0012579:54825-54844 | None:intergenic | 35.0% | |
| TAAACAATCATGGGGAAATG+TGG | + | tig0012579:54945-54964 | Msa1352140:intron | 35.0% | |
| ATAATCAAGTTCCTTCCAGA+AGG | - | tig0012579:55104-55123 | None:intergenic | 35.0% | |
| ! | CTATTTTCAGACAGAGTAAC+CGG | - | tig0012579:55254-55273 | None:intergenic | 35.0% |
| CAGAATAACATATTGCCATG+CGG | - | tig0012579:55348-55367 | None:intergenic | 35.0% | |
| AAACATGGTTGAGTAACTAG+TGG | + | tig0012579:55389-55408 | Msa1352140:three_prime_UTR | 35.0% | |
| TGATATAAGAGCAAAACGCA+AGG | - | tig0012579:55463-55482 | None:intergenic | 35.0% | |
| AACACACATCACACAATCCT+TGG | + | tig0012579:48005-48024 | Msa1352140:CDS | 40.0% | |
| ACTGCGTCTATTCATTCACA+AGG | + | tig0012579:48074-48093 | Msa1352140:CDS | 40.0% | |
| GACGGAAGGAATAATATGGA+TGG | + | tig0012579:48668-48687 | Msa1352140:intron | 40.0% | |
| CGGAAGGAATAATATGGATG+GGG | + | tig0012579:48670-48689 | Msa1352140:intron | 40.0% | |
| AGTAGAGAAATGCCAACTTC+TGG | + | tig0012579:48872-48891 | Msa1352140:CDS | 40.0% | |
| GCGAGTGTAAAATAGTTGCT+TGG | - | tig0012579:48898-48917 | None:intergenic | 40.0% | |
| ! | TATTTTACACTCGCCTTGCT+AGG | + | tig0012579:48904-48923 | Msa1352140:CDS | 40.0% |
| TTGTCAATAAAGGGAGGGAA+GGG | - | tig0012579:49072-49091 | None:intergenic | 40.0% | |
| TTCCCTCCCTTTATTGACAA+GGG | + | tig0012579:49072-49091 | Msa1352140:intron | 40.0% | |
| ATTGACAAGGGAGAAAATCC+TGG | + | tig0012579:49084-49103 | Msa1352140:intron | 40.0% | |
| CCCCTGAACTACAAAGTTAA+TGG | + | tig0012579:49170-49189 | Msa1352140:intron | 40.0% | |
| TTGTCAATAGCGTGCTATAG+CGG | + | tig0012579:49271-49290 | Msa1352140:intron | 40.0% | |
| ! | TATTGCTGACTGTGGTTTGT+GGG | - | tig0012579:49346-49365 | None:intergenic | 40.0% |
| TGATATCCAACACTGAACAC+AGG | - | tig0012579:50201-50220 | None:intergenic | 40.0% | |
| TAGAGTTCAGGCCATGAATT+AGG | + | tig0012579:50221-50240 | Msa1352140:intron | 40.0% | |
| AGAGTTCAGGCCATGAATTA+GGG | + | tig0012579:50222-50241 | Msa1352140:intron | 40.0% | |
| !!! | GCAGGTATTGCTGTTTTGTT+TGG | + | tig0012579:50577-50596 | Msa1352140:CDS | 40.0% |
| !!! | TATTGCTGTTTTGTTTGGCC+TGG | + | tig0012579:50582-50601 | Msa1352140:CDS | 40.0% |
| AAAACCATGCATAGCATTCC+AGG | - | tig0012579:50603-50622 | None:intergenic | 40.0% | |
| !! | TTTTGTGCTGGTCAGATTGT+TGG | + | tig0012579:50619-50638 | Msa1352140:intron | 40.0% |
| TATCCCGCTTCAAATACAAG+AGG | - | tig0012579:50845-50864 | None:intergenic | 40.0% | |
| ACTGAATATGTAGTACCAGG+GGG | + | tig0012579:51084-51103 | Msa1352140:intron | 40.0% | |
| TGTCATTGCAATGTAGTGAG+AGG | - | tig0012579:51190-51209 | None:intergenic | 40.0% | |
| AATGTTGGGACCAAAACCAA+GGG | - | tig0012579:51586-51605 | None:intergenic | 40.0% | |
| AAATGTTGGGACCAAAACCA+AGG | - | tig0012579:51587-51606 | None:intergenic | 40.0% | |
| GGACAATGTGGAGTTACTAT+TGG | - | tig0012579:52249-52268 | None:intergenic | 40.0% | |
| ! | CGAATATTTGGTGGACAATG+TGG | - | tig0012579:52261-52280 | None:intergenic | 40.0% |
| GTTTCGTCTCGAATATTTGG+TGG | - | tig0012579:52270-52289 | None:intergenic | 40.0% | |
| ! | GTTACCTAGTTGTGTTGTTG+TGG | - | tig0012579:52403-52422 | None:intergenic | 40.0% |
| TCCCAATTTGTGTCGAAACA+TGG | + | tig0012579:52690-52709 | Msa1352140:CDS | 40.0% | |
| TTTGTGTCGAAACATGGAAC+TGG | + | tig0012579:52696-52715 | Msa1352140:CDS | 40.0% | |
| GTGATGTTAGACAACCAGAT+CGG | + | tig0012579:52922-52941 | Msa1352140:intron | 40.0% | |
| TATTACCAATCAGTCCGATC+TGG | - | tig0012579:52939-52958 | None:intergenic | 40.0% | |
| ! | TGGTTTGTATTCAGGGTTTC+TGG | - | tig0012579:53152-53171 | None:intergenic | 40.0% |
| GAAACCCTGAATACAAACCA+AGG | + | tig0012579:53152-53171 | Msa1352140:intron | 40.0% | |
| !! | GAAGCCTTGGTTTGTATTCA+GGG | - | tig0012579:53159-53178 | None:intergenic | 40.0% |
| !! | TGAAGCCTTGGTTTGTATTC+AGG | - | tig0012579:53160-53179 | None:intergenic | 40.0% |
| GTACCAAGTTTATGAAGCCT+TGG | - | tig0012579:53172-53191 | None:intergenic | 40.0% | |
| !! | GCACGTTGATTTATGTTTGG+TGG | + | tig0012579:53370-53389 | Msa1352140:intron | 40.0% |
| ATCAACGAAACGCTGCTAAA+AGG | - | tig0012579:53403-53422 | None:intergenic | 40.0% | |
| ! | AGACAATTTTACCGTGCATC+TGG | + | tig0012579:53647-53666 | Msa1352140:intron | 40.0% |
| ! | GACAATTTTACCGTGCATCT+GGG | + | tig0012579:53648-53667 | Msa1352140:intron | 40.0% |
| AGCTACGTCTTAGGTGATTT+GGG | + | tig0012579:53823-53842 | Msa1352140:intron | 40.0% | |
| ! | TTAGGTGATTTGGGCATGTA+TGG | + | tig0012579:53832-53851 | Msa1352140:intron | 40.0% |
| TCAAAGGTAGAATGGGATCA+AGG | + | tig0012579:53917-53936 | Msa1352140:intron | 40.0% | |
| ! | GATTTAGAGTTACTGGTCTG+TGG | + | tig0012579:53967-53986 | Msa1352140:intron | 40.0% |
| TTTAATTCATACAGGGCACG+AGG | + | tig0012579:53995-54014 | Msa1352140:intron | 40.0% | |
| ACTAGATGGGGTAAACAACA+TGG | - | tig0012579:54033-54052 | None:intergenic | 40.0% | |
| TTTACCCCATCTAGTTGTCA+GGG | + | tig0012579:54038-54057 | Msa1352140:intron | 40.0% | |
| ! | TTTTCCCTGACAACTAGATG+GGG | - | tig0012579:54045-54064 | None:intergenic | 40.0% |
| ! | GTTTTTCCCTGACAACTAGA+TGG | - | tig0012579:54047-54066 | None:intergenic | 40.0% |
| TTTCTCAACCTGTGCATGTT+TGG | + | tig0012579:54115-54134 | Msa1352140:intron | 40.0% | |
| TTCTCAACCTGTGCATGTTT+GGG | + | tig0012579:54116-54135 | Msa1352140:intron | 40.0% | |
| ! | GGGATTTTACCTCCTTCAAA+TGG | + | tig0012579:54376-54395 | Msa1352140:intron | 40.0% |
| ! | TTTTACCTCCTTCAAATGGG+GGG | + | tig0012579:54380-54399 | Msa1352140:intron | 40.0% |
| !! | TTGTTTTACCCCCCATTTGA+AGG | - | tig0012579:54391-54410 | None:intergenic | 40.0% |
| AGAAAAAATGGCACTTCCCA+AGG | - | tig0012579:54420-54439 | None:intergenic | 40.0% | |
| CAGATGTGTGACATTTGATC+AGG | - | tig0012579:54983-55002 | None:intergenic | 40.0% | |
| ACATCTGTCAAGTCTGTTCT+AGG | + | tig0012579:54996-55015 | Msa1352140:intron | 40.0% | |
| TCAAGCATTTATGGAGGAAC+AGG | + | tig0012579:55125-55144 | Msa1352140:CDS | 40.0% | |
| GACTTAAAGGTTGAAGATGC+AGG | + | tig0012579:55151-55170 | Msa1352140:CDS | 40.0% | |
| ! | TATTGTGCTGGTGAGATTGT+TGG | + | tig0012579:55211-55230 | Msa1352140:CDS | 40.0% |
| GCAAAAATCTACACTTGGAG+TGG | - | tig0012579:55277-55296 | None:intergenic | 40.0% | |
| GGACTGCAAAAATCTACACT+TGG | - | tig0012579:55282-55301 | None:intergenic | 40.0% | |
| AAACGACATTGCGCCAATAT+AGG | - | tig0012579:55303-55322 | None:intergenic | 40.0% | |
| TCAAGTACAAGGGGTTATTG+AGG | - | tig0012579:55429-55448 | None:intergenic | 40.0% | |
| ATAACCCCTTGTACTTGAAG+CGG | + | tig0012579:55431-55450 | Msa1352140:three_prime_UTR | 40.0% | |
| TTGGAATGTTGGAAAGCTTG+TGG | + | tig0012579:55485-55504 | Msa1352140:three_prime_UTR | 40.0% | |
| GACTTATCAGTTAGGACGGA+AGG | + | tig0012579:48654-48673 | Msa1352140:intron | 45.0% | |
| TTCTTACCACAAGCAGCTGT+TGG | + | tig0012579:48815-48834 | Msa1352140:CDS | 45.0% | |
| TGGCATTTCTCTACTGTAGC+AGG | - | tig0012579:48867-48886 | None:intergenic | 45.0% | |
| ATAGTTGCTTGGCCAGAAGT+TGG | - | tig0012579:48887-48906 | None:intergenic | 45.0% | |
| CTTGTCAATAAAGGGAGGGA+AGG | - | tig0012579:49073-49092 | None:intergenic | 45.0% | |
| CTTCCCTCCCTTTATTGACA+AGG | + | tig0012579:49071-49090 | Msa1352140:intron | 45.0% | |
| CTCCCTTGTCAATAAAGGGA+GGG | - | tig0012579:49077-49096 | None:intergenic | 45.0% | |
| TCTCCCTTGTCAATAAAGGG+AGG | - | tig0012579:49078-49097 | None:intergenic | 45.0% | |
| ACAAGGGAGAAAATCCTGGA+GGG | + | tig0012579:49088-49107 | Msa1352140:intron | 45.0% | |
| ! | ATAGCGGAATAACGTATCCG+TGG | + | tig0012579:49287-49306 | Msa1352140:intron | 45.0% |
| AACGTATCCGTGGTAGGATT+TGG | + | tig0012579:49297-49316 | Msa1352140:intron | 45.0% | |
| ATCCGTGGTAGGATTTGGAA+CGG | + | tig0012579:49302-49321 | Msa1352140:intron | 45.0% | |
| ! | CTATTGCTGACTGTGGTTTG+TGG | - | tig0012579:49347-49366 | None:intergenic | 45.0% |
| CAAACCACAGTCAGCAATAG+TGG | + | tig0012579:49347-49366 | Msa1352140:intron | 45.0% | |
| GGCCGCAAATTCACTGTAAT+TGG | - | tig0012579:49385-49404 | None:intergenic | 45.0% | |
| AGCAGACACGATAGCAGTTA+GGG | - | tig0012579:49407-49426 | None:intergenic | 45.0% | |
| TAGCAGACACGATAGCAGTT+AGG | - | tig0012579:49408-49427 | None:intergenic | 45.0% | |
| CTGTGCAATAGTGGCTATAG+CGG | + | tig0012579:50107-50126 | Msa1352140:intron | 45.0% | |
| AACACAGGTGTAGTCAACTG+TGG | - | tig0012579:50186-50205 | None:intergenic | 45.0% | |
| ACTACACCTGTGTTCAGTGT+TGG | + | tig0012579:50192-50211 | Msa1352140:intron | 45.0% | |
| !! | TCCCATGTGGTGCTTTTTAG+AGG | + | tig0012579:50357-50376 | Msa1352140:intron | 45.0% |
| !! | GCCTCTAAAAAGCACCACAT+GGG | - | tig0012579:50361-50380 | None:intergenic | 45.0% |
| !! | TGCCTCTAAAAAGCACCACA+TGG | - | tig0012579:50362-50381 | None:intergenic | 45.0% |
| TGAAAGGACTCGCAACGATT+TGG | - | tig0012579:50496-50515 | None:intergenic | 45.0% | |
| TCGTTGCGAGTCCTTTCATA+AGG | + | tig0012579:50498-50517 | Msa1352140:CDS | 45.0% | |
| !!! | TGCTATGCATGGTTTTGTGC+TGG | + | tig0012579:50607-50626 | Msa1352140:CDS | 45.0% |
| TGCTGGTCAGATTGTTGGAA+GGG | + | tig0012579:50624-50643 | Msa1352140:intron | 45.0% | |
| GGAAGGGGATTTACTTTCAC+AGG | + | tig0012579:50640-50659 | Msa1352140:intron | 45.0% | |
| ! | ATGACAGTACTCCTGGCTTT+AGG | - | tig0012579:50721-50740 | None:intergenic | 45.0% |
| ATTCCAATTGTCTCAGCCCT+TGG | + | tig0012579:51567-51586 | Msa1352140:intron | 45.0% | |
| AAACCAAGGGCTGAGACAAT+TGG | - | tig0012579:51573-51592 | None:intergenic | 45.0% | |
| ! | ATTGTCTCAGCCCTTGGTTT+TGG | + | tig0012579:51573-51592 | Msa1352140:intron | 45.0% |
| ACTTGTTCGATTCACGAGCT+AGG | + | tig0012579:51894-51913 | Msa1352140:intron | 45.0% | |
| ! | CAAAACTACCCCCTGTTTTC+AGG | - | tig0012579:52200-52219 | None:intergenic | 45.0% |
| GAATCGACCGGAAATTGCAA+GGG | - | tig0012579:52374-52393 | None:intergenic | 45.0% | |
| TGAATCGACCGGAAATTGCA+AGG | - | tig0012579:52375-52394 | None:intergenic | 45.0% | |
| TTGTGGAGTGATGAATCGAC+CGG | - | tig0012579:52386-52405 | None:intergenic | 45.0% | |
| CACTCCACAACAACACAACT+AGG | + | tig0012579:52396-52415 | Msa1352140:intron | 45.0% | |
| GTGTGTGTCCAGATCTAAAG+AGG | - | tig0012579:52502-52521 | None:intergenic | 45.0% | |
| ! | TTCAATGGCGTCGAAGTTGA+AGG | + | tig0012579:52641-52660 | Msa1352140:CDS | 45.0% |
| TACTTTACACACGCCTTGCT+AGG | + | tig0012579:52805-52824 | Msa1352140:CDS | 45.0% | |
| TGGTCCACCAGATACAATGA+TGG | + | tig0012579:53587-53606 | Msa1352140:intron | 45.0% | |
| CACTCCATCATTGTATCTGG+TGG | - | tig0012579:53594-53613 | None:intergenic | 45.0% | |
| TCTTCATTGGATCCTACGCT+AGG | - | tig0012579:53624-53643 | None:intergenic | 45.0% | |
| GGTTTCCCTCATAGAAAGGA+TGG | + | tig0012579:53797-53816 | Msa1352140:intron | 45.0% | |
| CTCTGCCATCCTTTCTATGA+GGG | - | tig0012579:53805-53824 | None:intergenic | 45.0% | |
| GAGCTACGTCTTAGGTGATT+TGG | + | tig0012579:53822-53841 | Msa1352140:intron | 45.0% | |
| ! | TAGAGTTACTGGTCTGTGGT+TGG | + | tig0012579:53971-53990 | Msa1352140:intron | 45.0% |
| GTTTACCCCATCTAGTTGTC+AGG | + | tig0012579:54037-54056 | Msa1352140:intron | 45.0% | |
| ! | TGCACAGGTTGAGAAAGCAA+AGG | - | tig0012579:54111-54130 | None:intergenic | 45.0% |
| TCATTCACCCAAACATGCAC+AGG | - | tig0012579:54126-54145 | None:intergenic | 45.0% | |
| ! | TTTTACCCCCCATTTGAAGG+AGG | - | tig0012579:54388-54407 | None:intergenic | 45.0% |
| GAGGAACAGGCAAGACTTAA+AGG | + | tig0012579:55138-55157 | Msa1352140:CDS | 45.0% | |
| !! | CATTGCTGCTTTGTTTGGCT+TGG | + | tig0012579:55174-55193 | Msa1352140:CDS | 45.0% |
| !! | TTGGCTTGGAATGCTATGCA+TGG | + | tig0012579:55188-55207 | Msa1352140:CDS | 45.0% |
| TGCTATGCATGGTATTGTGC+TGG | + | tig0012579:55199-55218 | Msa1352140:CDS | 45.0% | |
| TGCTGGTGAGATTGTTGGAA+GGG | + | tig0012579:55216-55235 | Msa1352140:CDS | 45.0% | |
| GGAAGGGGATTTACTTTCAC+CGG | + | tig0012579:50640-50659 | Msa1352140:intron | 45.0% | |
| TAACCCCTTGTACTTGAAGC+GGG | + | tig0012579:55432-55451 | Msa1352140:three_prime_UTR | 45.0% | |
| !!! | AAATGTAATTAATTTTAAAA+AGG | + | tig0012579:48469-48488 | Msa1352140:intron | 5.0% |
| !! | AATCTTAAAAAATTTAATTA+TGG | - | tig0012579:51944-51963 | None:intergenic | 5.0% |
| TCTTCTCCAACAGCTGCTTG+TGG | - | tig0012579:48824-48843 | None:intergenic | 50.0% | |
| GCAGCTGTTGGAGAAGAACA+AGG | + | tig0012579:48827-48846 | Msa1352140:CDS | 50.0% | |
| GACAAGGGAGAAAATCCTGG+AGG | + | tig0012579:49087-49106 | Msa1352140:intron | 50.0% | |
| AACTTGAAACCTCACCCTCC+AGG | - | tig0012579:49105-49124 | None:intergenic | 50.0% | |
| CGGAATAACGTATCCGTGGT+AGG | + | tig0012579:49291-49310 | Msa1352140:intron | 50.0% | |
| GTCCGTTCCAAATCCTACCA+CGG | - | tig0012579:49307-49326 | None:intergenic | 50.0% | |
| ACCACAGTCAGCAATAGTGG+TGG | + | tig0012579:49350-49369 | Msa1352140:intron | 50.0% | |
| ! | ACCACCACTATTGCTGACTG+TGG | - | tig0012579:49354-49373 | None:intergenic | 50.0% |
| GCAGACACGATAGCAGTTAG+GGG | - | tig0012579:49406-49425 | None:intergenic | 50.0% | |
| CTGCTATCGTGTCTGCTAGT+AGG | + | tig0012579:49410-49429 | Msa1352140:intron | 50.0% | |
| ! | GGGATTGGTGCATGCTATCT+GGG | + | tig0012579:49758-49777 | Msa1352140:intron | 50.0% |
| AAGATGATCGGGTGATCGTG+TGG | + | tig0012579:49821-49840 | Msa1352140:intron | 50.0% | |
| TTGGCCTGGAATGCTATGCA+TGG | + | tig0012579:50596-50615 | Msa1352140:CDS | 50.0% | |
| ! | GTGCTGGTCAGATTGTTGGA+AGG | + | tig0012579:50623-50642 | Msa1352140:intron | 50.0% |
| GCTGGTCAGATTGTTGGAAG+GGG | + | tig0012579:50625-50644 | Msa1352140:intron | 50.0% | |
| GGCTCTATACTCCTAAAGCC+AGG | + | tig0012579:50707-50726 | Msa1352140:intron | 50.0% | |
| ! | CTCAGCTTGTTTAAACCCCC+TGG | - | tig0012579:51102-51121 | None:intergenic | 50.0% |
| AGGAAGACGCAAGCAAAGAG+AGG | + | tig0012579:52344-52363 | Msa1352140:intron | 50.0% | |
| GACAACCAGATCGGACTGAT+TGG | + | tig0012579:52931-52950 | Msa1352140:intron | 50.0% | |
| GGAGTCCTGCAATGTTGTGT+GGG | + | tig0012579:53669-53688 | Msa1352140:intron | 50.0% | |
| TTCGTCCCACACAACATTGC+AGG | - | tig0012579:53677-53696 | None:intergenic | 50.0% | |
| TGTTGTGTGGGACGAAATGC+TGG | + | tig0012579:53681-53700 | Msa1352140:intron | 50.0% | |
| GTTGTGTGGGACGAAATGCT+GGG | + | tig0012579:53682-53701 | Msa1352140:intron | 50.0% | |
| GGGTGGTTTCCCTCATAGAA+AGG | + | tig0012579:53793-53812 | Msa1352140:intron | 50.0% | |
| GCTCTGCCATCCTTTCTATG+AGG | - | tig0012579:53806-53825 | None:intergenic | 50.0% | |
| !! | GCAGGCATTGCTGCTTTGTT+TGG | + | tig0012579:55169-55188 | Msa1352140:CDS | 50.0% |
| ! | GTGCTGGTGAGATTGTTGGA+AGG | + | tig0012579:55215-55234 | Msa1352140:CDS | 50.0% |
| GCTGGTGAGATTGTTGGAAG+GGG | + | tig0012579:55217-55236 | Msa1352140:CDS | 50.0% | |
| TCGAATATGGGCATTCCGCA+TGG | + | tig0012579:55330-55349 | Msa1352140:three_prime_UTR | 50.0% | |
| CATCCCGCTTCAAGTACAAG+GGG | - | tig0012579:55438-55457 | None:intergenic | 50.0% | |
| CCATCCCGCTTCAAGTACAA+GGG | - | tig0012579:55439-55458 | None:intergenic | 50.0% | |
| TCCATCCCGCTTCAAGTACA+AGG | - | tig0012579:55440-55459 | None:intergenic | 50.0% | |
| GGAGAAAATCCTGGAGGGTG+AGG | + | tig0012579:49093-49112 | Msa1352140:intron | 55.0% | |
| ! | AGGATTTGGAACGGACCGCA+CGG | + | tig0012579:49311-49330 | Msa1352140:intron | 55.0% |
| ! | GGGGATTGGTGCATGCTATC+TGG | + | tig0012579:49757-49776 | Msa1352140:intron | 55.0% |
| AGGCGCACCCTTGCAATTTC+CGG | + | tig0012579:52364-52383 | Msa1352140:intron | 55.0% | |
| GAGTGATAGAGGCCTAGCGT+AGG | + | tig0012579:53609-53628 | Msa1352140:intron | 55.0% | |
| TTGCAGGACTCCCAGATGCA+CGG | - | tig0012579:53661-53680 | None:intergenic | 55.0% | |
| GGGAGTCCTGCAATGTTGTG+TGG | + | tig0012579:53668-53687 | Msa1352140:intron | 55.0% | |
| GGATGGCAGAGCTACGTCTT+AGG | + | tig0012579:53814-53833 | Msa1352140:intron | 55.0% | |
| ! | CAGCATTCCGGTTCGTTGTG+AGG | + | tig0012579:55078-55097 | Msa1352140:intron | 55.0% |
| CAGAAGGCCTCACAACGAAC+CGG | - | tig0012579:55088-55107 | None:intergenic | 55.0% | |
| TCGTTGTGAGGCCTTCTGGA+AGG | + | tig0012579:55090-55109 | Msa1352140:CDS | 55.0% | |
| CCCTTGTACTTGAAGCGGGA+TGG | + | tig0012579:55436-55455 | Msa1352140:three_prime_UTR | 55.0% | |
| !! | GCGACGCTGCAAAAGCACCA+AGG | - | tig0012579:48025-48044 | None:intergenic | 60.0% |
| ! | AACGGACCGCACGGTGCTTT+TGG | + | tig0012579:49320-49339 | Msa1352140:intron | 60.0% |
| !! | TGTGGGCCAAAAGCACCGTG+CGG | - | tig0012579:49329-49348 | None:intergenic | 60.0% |
| CGGTTCGTTGTGAGGCCTTC+TGG | + | tig0012579:55086-55105 | Msa1352140:CDS | 60.0% | |
| ! | GGTGCTTTTGCAGCGTCGCG+AGG | + | tig0012579:48026-48045 | Msa1352140:CDS | 65.0% |
| GCAGCGTCGCGAGGTAGCAG+CGG | + | tig0012579:48035-48054 | Msa1352140:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0012579 | gene | 47961 | 55690 | 47961 | ID=Msa1352140;Name=Msa1352140 |
| tig0012579 | mRNA | 47961 | 55690 | 47961 | ID=Msa1352140-mRNA-1;Parent=Msa1352140;Name=Msa1352140-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.75|0.6|1|1|1|5|423|275 |
| tig0012579 | exon | 47961 | 48095 | 47961 | ID=Msa1352140-mRNA-1:exon:7995;Parent=Msa1352140-mRNA-1 |
| tig0012579 | exon | 48747 | 48925 | 48747 | ID=Msa1352140-mRNA-1:exon:7996;Parent=Msa1352140-mRNA-1 |
| tig0012579 | exon | 50489 | 50628 | 50489 | ID=Msa1352140-mRNA-1:exon:7997;Parent=Msa1352140-mRNA-1 |
| tig0012579 | exon | 52640 | 52826 | 52640 | ID=Msa1352140-mRNA-1:exon:7998;Parent=Msa1352140-mRNA-1 |
| tig0012579 | exon | 55081 | 55690 | 55081 | ID=Msa1352140-mRNA-1:exon:7999;Parent=Msa1352140-mRNA-1 |
| tig0012579 | CDS | 47961 | 48095 | 47961 | ID=Msa1352140-mRNA-1:cds;Parent=Msa1352140-mRNA-1 |
| tig0012579 | CDS | 48747 | 48925 | 48747 | ID=Msa1352140-mRNA-1:cds;Parent=Msa1352140-mRNA-1 |
| tig0012579 | CDS | 50489 | 50628 | 50489 | ID=Msa1352140-mRNA-1:cds;Parent=Msa1352140-mRNA-1 |
| tig0012579 | CDS | 52640 | 52826 | 52640 | ID=Msa1352140-mRNA-1:cds;Parent=Msa1352140-mRNA-1 |
| tig0012579 | CDS | 55081 | 55267 | 55081 | ID=Msa1352140-mRNA-1:cds;Parent=Msa1352140-mRNA-1 |
| tig0012579 | three_prime_UTR | 55268 | 55690 | 55268 | ID=Msa1352140-mRNA-1:three_prime_utr;Parent=Msa1352140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
