Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297830 | XP_013464930.1 | 96.460 | 113 | 4 | 0 | 1 | 113 | 1 | 113 | 3.86e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297830 | sp|O24415|RLA2B_MAIZE | 65.487 | 113 | 39 | 0 | 1 | 113 | 1 | 113 | 8.56e-32 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297830 | A0A072VLF0 | 96.460 | 113 | 4 | 0 | 1 | 113 | 1 | 113 | 1.84e-66 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0297830 | 0.801467 | 8.882590e-49 | -8.615850e-47 |
| Msa0002790 | Msa0297830 | 0.816726 | 4.765667e-52 | -8.615850e-47 |
| Msa0022970 | Msa0297830 | 0.801240 | 9.884691e-49 | -8.615850e-47 |
| Msa0027590 | Msa0297830 | 0.815661 | 8.246567e-52 | -8.615850e-47 |
| Msa0032780 | Msa0297830 | 0.809263 | 2.063200e-50 | -8.615850e-47 |
| Msa0040220 | Msa0297830 | 0.831886 | 1.294140e-55 | -8.615850e-47 |
| Msa0042480 | Msa0297830 | 0.859898 | 3.007172e-63 | -8.615850e-47 |
| Msa0045730 | Msa0297830 | 0.811199 | 7.890701e-51 | -8.615850e-47 |
| Msa0049690 | Msa0297830 | 0.812516 | 4.076374e-51 | -8.615850e-47 |
| Msa0075350 | Msa0297830 | 0.832262 | 1.045227e-55 | -8.615850e-47 |
| Msa0079590 | Msa0297830 | 0.851506 | 8.488977e-61 | -8.615850e-47 |
| Msa0087910 | Msa0297830 | 0.811870 | 5.639425e-51 | -8.615850e-47 |
| Msa0114570 | Msa0297830 | 0.810387 | 1.181953e-50 | -8.615850e-47 |
| Msa0116130 | Msa0297830 | 0.832539 | 8.924313e-56 | -8.615850e-47 |
| Msa0116670 | Msa0297830 | 0.851827 | 6.884473e-61 | -8.615850e-47 |
| Msa0133540 | Msa0297830 | 0.829986 | 3.786627e-55 | -8.615850e-47 |
| Msa0134580 | Msa0297830 | 0.803526 | 3.342630e-49 | -8.615850e-47 |
| Msa0138890 | Msa0297830 | 0.880268 | 6.310854e-70 | -8.615850e-47 |
| Msa0172930 | Msa0297830 | 0.817262 | 3.613265e-52 | -8.615850e-47 |
| Msa0173530 | Msa0297830 | 0.848324 | 6.592341e-60 | -8.615850e-47 |
| Msa0181490 | Msa0297830 | 0.834603 | 2.724256e-56 | -8.615850e-47 |
| Msa0191450 | Msa0297830 | 0.865096 | 7.565916e-65 | -8.615850e-47 |
| Msa0191550 | Msa0297830 | 0.851620 | 7.884383e-61 | -8.615850e-47 |
| Msa0192750 | Msa0297830 | 0.821721 | 3.472513e-53 | -8.615850e-47 |
| Msa0194940 | Msa0297830 | 0.828312 | 9.641447e-55 | -8.615850e-47 |
| Msa0197980 | Msa0297830 | 0.823160 | 1.608557e-53 | -8.615850e-47 |
| Msa0210330 | Msa0297830 | 0.840067 | 1.086964e-57 | -8.615850e-47 |
| Msa0210360 | Msa0297830 | 0.886081 | 4.664090e-72 | -8.615850e-47 |
| Msa0218830 | Msa0297830 | 0.837611 | 4.694197e-57 | -8.615850e-47 |
| Msa0219120 | Msa0297830 | 0.824458 | 7.983905e-54 | -8.615850e-47 |
| Msa0221030 | Msa0297830 | 0.817502 | 3.189637e-52 | -8.615850e-47 |
| Msa0222730 | Msa0297830 | 0.814354 | 1.608313e-51 | -8.615850e-47 |
| Msa0230490 | Msa0297830 | 0.801658 | 8.115041e-49 | -8.615850e-47 |
| Msa0265250 | Msa0297830 | 0.818211 | 2.206149e-52 | -8.615850e-47 |
| Msa0269180 | Msa0297830 | 0.850228 | 1.944875e-60 | -8.615850e-47 |
| Msa0297830 | Msa0298870 | 0.833767 | 4.414407e-56 | -8.615850e-47 |
| Msa0297830 | Msa0301220 | 0.863229 | 2.888898e-64 | -8.615850e-47 |
| Msa0297830 | Msa0306690 | 0.830041 | 3.670614e-55 | -8.615850e-47 |
| Msa0297830 | Msa0310080 | 0.813273 | 2.782510e-51 | -8.615850e-47 |
| Msa0297830 | Msa0327300 | 0.809729 | 1.638674e-50 | -8.615850e-47 |
| Msa0297830 | Msa0333910 | 0.803579 | 3.259257e-49 | -8.615850e-47 |
| Msa0297830 | Msa0335840 | 0.994588 | 1.693745e-208 | -8.615850e-47 |
| Msa0297830 | Msa0337670 | 0.818977 | 1.478920e-52 | -8.615850e-47 |
| Msa0297830 | Msa0348830 | 0.805769 | 1.137539e-49 | -8.615850e-47 |
| Msa0297830 | Msa0369410 | 0.815910 | 7.255622e-52 | -8.615850e-47 |
| Msa0297830 | Msa0382210 | 0.805541 | 1.270045e-49 | -8.615850e-47 |
| Msa0297830 | Msa0426090 | 0.819502 | 1.122903e-52 | -8.615850e-47 |
| Msa0297830 | Msa0426250 | 0.808031 | 3.781587e-50 | -8.615850e-47 |
| Msa0297830 | Msa0463520 | 0.837660 | 4.559947e-57 | -8.615850e-47 |
| Msa0297830 | Msa0471880 | 0.850807 | 1.337027e-60 | -8.615850e-47 |
| Msa0297830 | Msa0472480 | 0.816098 | 6.588395e-52 | -8.615850e-47 |
| Msa0297830 | Msa0475810 | 0.848327 | 6.576503e-60 | -8.615850e-47 |
| Msa0297830 | Msa0481520 | 0.845171 | 4.795594e-59 | -8.615850e-47 |
| Msa0297830 | Msa0481850 | 0.846088 | 2.705102e-59 | -8.615850e-47 |
| Msa0297830 | Msa0483110 | 0.836126 | 1.123419e-56 | -8.615850e-47 |
| Msa0297830 | Msa0529900 | 0.813511 | 2.466770e-51 | -8.615850e-47 |
| Msa0297830 | Msa0540480 | 0.845080 | 5.073963e-59 | -8.615850e-47 |
| Msa0297830 | Msa0582320 | 0.827364 | 1.629936e-54 | -8.615850e-47 |
| Msa0297830 | Msa0584030 | 0.846349 | 2.297118e-59 | -8.615850e-47 |
| Msa0297830 | Msa0591050 | 0.811547 | 6.627875e-51 | -8.615850e-47 |
| Msa0297830 | Msa0596370 | 0.856885 | 2.376322e-62 | -8.615850e-47 |
| Msa0297830 | Msa0604960 | 0.807506 | 4.889791e-50 | -8.615850e-47 |
| Msa0297830 | Msa0622230 | 0.803919 | 2.770254e-49 | -8.615850e-47 |
| Msa0297830 | Msa0622750 | 0.813527 | 2.446403e-51 | -8.615850e-47 |
| Msa0297830 | Msa0623200 | 0.806358 | 8.549519e-50 | -8.615850e-47 |
| Msa0297830 | Msa0625570 | 0.815268 | 1.008584e-51 | -8.615850e-47 |
| Msa0297830 | Msa0653060 | 0.838788 | 2.334990e-57 | -8.615850e-47 |
| Msa0297830 | Msa0705800 | 0.897002 | 2.144510e-76 | -8.615850e-47 |
| Msa0297830 | Msa0712610 | 0.864078 | 1.574618e-64 | -8.615850e-47 |
| Msa0297830 | Msa0717380 | 0.881737 | 1.871601e-70 | -8.615850e-47 |
| Msa0297830 | Msa0729200 | 0.854373 | 1.285500e-61 | -8.615850e-47 |
| Msa0297830 | Msa0766080 | 0.833531 | 5.054728e-56 | -8.615850e-47 |
| Msa0297830 | Msa0769590 | 0.844230 | 8.596419e-59 | -8.615850e-47 |
| Msa0297830 | Msa0781080 | 0.846393 | 2.234422e-59 | -8.615850e-47 |
| Msa0297830 | Msa0781310 | 0.814356 | 1.606253e-51 | -8.615850e-47 |
| Msa0297830 | Msa0783630 | 0.828991 | 6.607816e-55 | -8.615850e-47 |
| Msa0297830 | Msa0785130 | 0.803568 | 3.276948e-49 | -8.615850e-47 |
| Msa0297830 | Msa0788380 | 0.851801 | 7.004412e-61 | -8.615850e-47 |
| Msa0297830 | Msa0792420 | 0.823608 | 1.263898e-53 | -8.615850e-47 |
| Msa0297830 | Msa0799830 | 0.884559 | 1.728574e-71 | -8.615850e-47 |
| Msa0297830 | Msa0806880 | 0.817527 | 3.148223e-52 | -8.615850e-47 |
| Msa0297830 | Msa0822580 | 0.828472 | 8.821560e-55 | -8.615850e-47 |
| Msa0297830 | Msa0827380 | 0.833074 | 6.570915e-56 | -8.615850e-47 |
| Msa0297830 | Msa0838070 | 0.811094 | 8.313425e-51 | -8.615850e-47 |
| Msa0297830 | Msa0860860 | 0.825009 | 5.922226e-54 | -8.615850e-47 |
| Msa0297830 | Msa0861320 | 0.859799 | 3.222119e-63 | -8.615850e-47 |
| Msa0297830 | Msa0876170 | 0.839987 | 1.140187e-57 | -8.615850e-47 |
| Msa0297830 | Msa0888810 | 0.862339 | 5.436210e-64 | -8.615850e-47 |
| Msa0297830 | Msa0915540 | 0.876746 | 1.092928e-68 | -8.615850e-47 |
| Msa0297830 | Msa0945480 | 0.841012 | 6.148231e-58 | -8.615850e-47 |
| Msa0297830 | Msa1021120 | 0.856835 | 2.458910e-62 | -8.615850e-47 |
| Msa0297830 | Msa1037290 | 0.883761 | 3.412583e-71 | -8.615850e-47 |
| Msa0297830 | Msa1039470 | 0.808629 | 2.819116e-50 | -8.615850e-47 |
| Msa0297830 | Msa1039520 | 0.870335 | 1.577098e-66 | -8.615850e-47 |
| Msa0297830 | Msa1040160 | 0.885449 | 8.056906e-72 | -8.615850e-47 |
| Msa0297830 | Msa1041680 | 0.854573 | 1.124984e-61 | -8.615850e-47 |
| Msa0297830 | Msa1042100 | 0.802709 | 4.933684e-49 | -8.615850e-47 |
| Msa0297830 | Msa1058700 | 0.832461 | 9.331047e-56 | -8.615850e-47 |
| Msa0297830 | Msa1078870 | 0.855861 | 4.746391e-62 | -8.615850e-47 |
| Msa0297830 | Msa1078980 | 0.854443 | 1.226536e-61 | -8.615850e-47 |
| Msa0297830 | Msa1080350 | 0.855943 | 4.491870e-62 | -8.615850e-47 |
| Msa0297830 | Msa1082170 | 0.841769 | 3.885858e-58 | -8.615850e-47 |
| Msa0297830 | Msa1083370 | 0.896110 | 5.051263e-76 | -8.615850e-47 |
| Msa0297830 | Msa1088490 | 0.814893 | 1.221892e-51 | -8.615850e-47 |
| Msa0297830 | Msa1089220 | 0.817736 | 2.824383e-52 | -8.615850e-47 |
| Msa0297830 | Msa1094380 | 0.824463 | 7.962142e-54 | -8.615850e-47 |
| Msa0297830 | Msa1096900 | 0.847708 | 9.748533e-60 | -8.615850e-47 |
| Msa0297830 | Msa1124850 | 0.809709 | 1.655102e-50 | -8.615850e-47 |
| Msa0297830 | Msa1125860 | 0.844913 | 5.630822e-59 | -8.615850e-47 |
| Msa0297830 | Msa1126060 | 0.843705 | 1.188738e-58 | -8.615850e-47 |
| Msa0297830 | Msa1126520 | 0.846591 | 1.973375e-59 | -8.615850e-47 |
| Msa0297830 | Msa1164150 | 0.866414 | 2.900736e-65 | -8.615850e-47 |
| Msa0297830 | Msa1165640 | 0.808524 | 2.969640e-50 | -8.615850e-47 |
| Msa0297830 | Msa1166570 | 0.859699 | 3.452246e-63 | -8.615850e-47 |
| Msa0297830 | Msa1167540 | 0.859232 | 4.769721e-63 | -8.615850e-47 |
| Msa0297830 | Msa1167550 | 0.853013 | 3.164076e-61 | -8.615850e-47 |
| Msa0297830 | Msa1169180 | 0.840021 | 1.117145e-57 | -8.615850e-47 |
| Msa0297830 | Msa1186030 | 0.850636 | 1.493929e-60 | -8.615850e-47 |
| Msa0297830 | Msa1186980 | 0.808156 | 3.557334e-50 | -8.615850e-47 |
| Msa0297830 | Msa1203560 | 0.802034 | 6.794474e-49 | -8.615850e-47 |
| Msa0297830 | Msa1215820 | 0.809747 | 1.623720e-50 | -8.615850e-47 |
| Msa0297830 | Msa1218170 | 0.864174 | 1.470093e-64 | -8.615850e-47 |
| Msa0297830 | Msa1240270 | 0.854209 | 1.433403e-61 | -8.615850e-47 |
| Msa0297830 | Msa1256840 | 0.817389 | 3.382758e-52 | -8.615850e-47 |
| Msa0297830 | Msa1258540 | 0.808011 | 3.819118e-50 | -8.615850e-47 |
| Msa0297830 | Msa1273340 | 0.803540 | 3.320593e-49 | -8.615850e-47 |
| Msa0297830 | Msa1295150 | 0.800887 | 1.166966e-48 | -8.615850e-47 |
| Msa0297830 | Msa1301640 | 0.824696 | 7.016204e-54 | -8.615850e-47 |
| Msa0297830 | Msa1311400 | 0.865649 | 5.067870e-65 | -8.615850e-47 |
| Msa0297830 | Msa1332250 | 0.869760 | 2.432641e-66 | -8.615850e-47 |
| Msa0297830 | Msa1338190 | 0.821898 | 3.161129e-53 | -8.615850e-47 |
| Msa0297830 | Msa1340980 | 0.820554 | 6.451749e-53 | -8.615850e-47 |
| Msa0297830 | Msa1352140 | 0.812152 | 4.894989e-51 | -8.615850e-47 |
| Msa0297830 | Msa1356790 | 0.873459 | 1.447105e-67 | -8.615850e-47 |
| Msa0297830 | Msa1362790 | 0.847584 | 1.054140e-59 | -8.615850e-47 |
| Msa0297830 | Msa1368920 | 0.882462 | 1.020589e-70 | -8.615850e-47 |
| Msa0297830 | Msa1369190 | 0.825821 | 3.803420e-54 | -8.615850e-47 |
| Msa0297830 | Msa1374240 | 0.860025 | 2.752907e-63 | -8.615850e-47 |
| Msa0297830 | Msa1387410 | 0.825080 | 5.695478e-54 | -8.615850e-47 |
| Msa0297830 | Msa1392590 | 0.850001 | 2.251075e-60 | -8.615850e-47 |
| Msa0297830 | Msa1397100 | 0.853807 | 1.871463e-61 | -8.615850e-47 |
| Msa0297830 | Msa1403910 | 0.869258 | 3.542162e-66 | -8.615850e-47 |
| Msa0297830 | Msa1406080 | 0.825662 | 4.147824e-54 | -8.615850e-47 |
| Msa0297830 | Msa1413500 | 0.819864 | 9.285386e-53 | -8.615850e-47 |
| Msa0297830 | Msa1418770 | 0.867258 | 1.562199e-65 | -8.615850e-47 |
| Msa0297830 | Msa1426120 | 0.869664 | 2.613920e-66 | -8.615850e-47 |
| Msa0297830 | Msa1426370 | 0.830650 | 2.606588e-55 | -8.615850e-47 |
| Msa0297830 | Msa1426490 | 0.873135 | 1.858975e-67 | -8.615850e-47 |
| Msa0297830 | Msa1437280 | 0.817728 | 2.837348e-52 | -8.615850e-47 |
| Msa0297830 | Msa1466040 | 0.803103 | 4.090017e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297830 | MtrunA17_Chr2g0321121 | 96.460 | 113 | 4 | 0 | 1 | 113 | 1 | 113 | 3.55e-70 | 205 |
| Msa0297830 | MtrunA17_Chr5g0421491 | 87.611 | 113 | 14 | 0 | 1 | 113 | 1 | 113 | 5.16e-38 | 124 |
| Msa0297830 | MtrunA17_Chr1g0179001 | 73.451 | 113 | 29 | 1 | 1 | 113 | 1 | 112 | 8.39e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0297830 | AT2G27710.4 | 77.143 | 70 | 16 | 0 | 1 | 70 | 1 | 70 | 9.36e-32 | 108 |
| Msa0297830 | AT3G44590.1 | 67.257 | 113 | 35 | 2 | 1 | 113 | 1 | 111 | 8.38e-30 | 103 |
| Msa0297830 | AT3G44590.2 | 67.257 | 113 | 35 | 2 | 1 | 113 | 1 | 111 | 8.38e-30 | 103 |
| Msa0297830 | AT2G27720.1 | 66.087 | 115 | 37 | 1 | 1 | 113 | 1 | 115 | 1.93e-27 | 97.8 |
| Msa0297830 | AT2G27710.1 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.45e-25 | 92.4 |
| Msa0297830 | AT2G27710.2 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.45e-25 | 92.4 |
| Msa0297830 | AT2G27710.3 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.45e-25 | 92.4 |
| Msa0297830 | AT3G28500.1 | 55.652 | 115 | 49 | 2 | 1 | 113 | 1 | 115 | 3.14e-25 | 92.0 |
| Msa0297830 | AT2G27720.3 | 59.843 | 127 | 37 | 2 | 1 | 113 | 1 | 127 | 6.69e-24 | 89.0 |
| Msa0297830 | AT2G27720.2 | 57.692 | 130 | 38 | 2 | 1 | 113 | 1 | 130 | 1.44e-22 | 85.9 |
| Msa0297830 | AT5G40040.1 | 57.895 | 114 | 47 | 1 | 1 | 113 | 1 | 114 | 2.30e-16 | 69.3 |
| Msa0297830 | AT2G27720.4 | 66.667 | 87 | 27 | 1 | 29 | 113 | 5 | 91 | 5.67e-13 | 60.1 |
Find 51 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTACTTGTTGGCCGTTT+TGG | 0.128749 | 2_3:-51643199 | Msa0297830:CDS |
| ATTCAGCTTATTTGATTAAA+AGG | 0.186887 | 2_3:-51641743 | Msa0297830:exon |
| GCTGATCTTAAACAAATTCT+TGG | 0.267351 | 2_3:-51643153 | Msa0297830:CDS |
| GTTGCTGTGTCTGCTGCAAC+TGG | 0.362343 | 2_3:-51641940 | Msa0297830:CDS |
| TCTTCCTTTGCTGCTTCAGC+AGG | 0.364467 | 2_3:+51641895 | None:intergenic |
| CTTAAACAAATTCTTGGATC+AGG | 0.372982 | 2_3:-51643147 | Msa0297830:intron |
| TTTCAATTTAATCTGCGTTA+TGG | 0.375448 | 2_3:-51641605 | Msa0297830:three_prime_UTR |
| GTTATCTTTGTGCAGGATAT+GGG | 0.399106 | 2_3:-51641766 | Msa0297830:intron |
| AGAGAAGAAGGTGGAAGAGA+AGG | 0.434796 | 2_3:-51641875 | Msa0297830:CDS |
| GATTATCGCAGCTTACTTGT+TGG | 0.445399 | 2_3:-51643208 | Msa0297830:CDS |
| GTGTCTGCTGCAACTGGAGG+AGG | 0.445905 | 2_3:-51641934 | Msa0297830:CDS |
| TGCGCCTGCTGAAGCAGCAA+AGG | 0.454235 | 2_3:-51641899 | Msa0297830:CDS |
| TGCGGCTTGCAACATCCCTC+TGG | 0.459037 | 2_3:-51643381 | Msa0297830:five_prime_UTR |
| CCAAGTTGATATTTATTGAC+TGG | 0.461135 | 2_3:-51641414 | Msa0297830:three_prime_UTR |
| GATCAGCAGCTGAAGGGGAT+TGG | 0.469713 | 2_3:+51643169 | None:intergenic |
| GATATCTTACTTGATGGAAA+TGG | 0.483487 | 2_3:+51643325 | None:intergenic |
| CCTTGCCCTTGACTTCACTT+AGG | 0.488662 | 2_3:+51642028 | None:intergenic |
| TGCCAGTGGAAGAGAAAAGT+TGG | 0.491656 | 2_3:-51641989 | Msa0297830:CDS |
| TTGACTGGTACACCAGATGT+AGG | 0.496222 | 2_3:-51641399 | Msa0297830:three_prime_UTR |
| CACAGCAACAGCACCACCAC+CGG | 0.500128 | 2_3:+51641954 | None:intergenic |
| AGCAGCAAAGGAAGAGAAGA+AGG | 0.518126 | 2_3:-51641887 | Msa0297830:CDS |
| GCTTCAGTTCCATCCGGTGG+TGG | 0.522209 | 2_3:-51641967 | Msa0297830:CDS |
| CCAGTCAATAAATATCAACT+TGG | 0.526486 | 2_3:+51641414 | None:intergenic |
| GGATTGGTTGCCTCCCAAAA+CGG | 0.534645 | 2_3:+51643185 | None:intergenic |
| CAACTCAATGTTGCCATCCT+CGG | 0.536919 | 2_3:+51642053 | None:intergenic |
| GCAACAGCACCACCACCGGA+TGG | 0.539099 | 2_3:+51641958 | None:intergenic |
| TGTTTAAGATCAGCAGCTGA+AGG | 0.541739 | 2_3:+51643162 | None:intergenic |
| GACGGTAGGGTTTCACCAGA+GGG | 0.546412 | 2_3:+51643366 | None:intergenic |
| TCTTCCACTGGCAATAAGCT+CGG | 0.547245 | 2_3:+51641999 | None:intergenic |
| GTTTAAGATCAGCAGCTGAA+GGG | 0.564265 | 2_3:+51643163 | None:intergenic |
| TTTAAGATCAGCAGCTGAAG+GGG | 0.564880 | 2_3:+51643164 | None:intergenic |
| AAGTTGGCTTCAGTTCCATC+CGG | 0.567453 | 2_3:-51641973 | Msa0297830:CDS |
| ATCTTACTTGATGGAAATGG+CGG | 0.571234 | 2_3:+51643328 | None:intergenic |
| GTTGGAGTTGAGGCCGAGGA+TGG | 0.573673 | 2_3:-51642066 | Msa0297830:CDS |
| TGACTGGTACACCAGATGTA+GGG | 0.583188 | 2_3:-51641398 | None:intergenic |
| GTTGCTCCTAAGTGAAGTCA+AGG | 0.590863 | 2_3:-51642034 | Msa0297830:CDS |
| GCTGTGTCTGCTGCAACTGG+AGG | 0.592795 | 2_3:-51641937 | Msa0297830:CDS |
| ATTGTCTTAATATTATTGCA+TGG | 0.594069 | 2_3:-51641440 | Msa0297830:three_prime_UTR |
| TATGATTGTAGTTGGAGTTG+AGG | 0.599920 | 2_3:-51642076 | Msa0297830:intron |
| TGAGATCTCGACTAGACGGT+AGG | 0.603306 | 2_3:+51643352 | None:intergenic |
| GAGATCTCGACTAGACGGTA+GGG | 0.605794 | 2_3:+51643353 | None:intergenic |
| CATGAATCTACCACTAGAGG+AGG | 0.606127 | 2_3:+51641524 | None:intergenic |
| TTTGCCGAGCTTATTGCCAG+TGG | 0.606365 | 2_3:-51642003 | Msa0297830:CDS |
| TTGGCTTCAGTTCCATCCGG+TGG | 0.607108 | 2_3:-51641970 | Msa0297830:CDS |
| ATTCATGAATCTACCACTAG+AGG | 0.610067 | 2_3:+51641521 | None:intergenic |
| CCTAAGTGAAGTCAAGGGCA+AGG | 0.616488 | 2_3:-51642028 | Msa0297830:CDS |
| TGTAGTTGGAGTTGAGGCCG+AGG | 0.617745 | 2_3:-51642070 | Msa0297830:intron |
| AGACGGTAGGGTTTCACCAG+AGG | 0.630670 | 2_3:+51643365 | None:intergenic |
| CGGATGAGATCTCGACTAGA+CGG | 0.639961 | 2_3:+51643348 | None:intergenic |
| TTGCTCCTAAGTGAAGTCAA+GGG | 0.680870 | 2_3:-51642033 | Msa0297830:CDS |
| AGCAAAGGAAGAGAAGAAGG+TGG | 0.683753 | 2_3:-51641884 | Msa0297830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGATTAAAGATTAAATT+GGG | + | chr2_3:51641669-51641688 | None:intergenic | 10.0% |
| !! | AATAAGATTAAAGATTAAAT+TGG | + | chr2_3:51641670-51641689 | None:intergenic | 10.0% |
| !!! | AAATAATTTTAATTCAAGTT+TGG | - | chr2_3:51642073-51642092 | Msa0297830:intron | 10.0% |
| !!! | AATAATTTTAATTCAAGTTT+GGG | - | chr2_3:51642074-51642093 | Msa0297830:intron | 10.0% |
| !! | ATAAGATTAAAGATTAAATT+GGG | + | chr2_3:51641669-51641688 | None:intergenic | 10.0% |
| !! | AATAAGATTAAAGATTAAAT+TGG | + | chr2_3:51641670-51641689 | None:intergenic | 10.0% |
| !!! | AAATAATTTTAATTCAAGTT+TGG | - | chr2_3:51642073-51642092 | Msa0297830:intron | 10.0% |
| !!! | AATAATTTTAATTCAAGTTT+GGG | - | chr2_3:51642074-51642093 | Msa0297830:intron | 10.0% |
| !!! | TTTAACTTTAATTCAAGTTT+GGG | - | chr2_3:51642107-51642126 | Msa0297830:intron | 15.0% |
| !! | ATGAAAATTGATCAAAATAT+TGG | - | chr2_3:51642155-51642174 | Msa0297830:intron | 15.0% |
| !! | TTAAAATCAAACCAATATAT+GGG | + | chr2_3:51642429-51642448 | None:intergenic | 15.0% |
| !! | ATTAAAATCAAACCAATATA+TGG | + | chr2_3:51642430-51642449 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGACTTTATTTT+TGG | - | chr2_3:51642677-51642696 | Msa0297830:intron | 15.0% |
| !!! | AAAAAAGTGACTTTATTTTT+GGG | - | chr2_3:51642678-51642697 | Msa0297830:intron | 15.0% |
| !!! | TTTAACTTTAATTCAAGTTT+GGG | - | chr2_3:51642107-51642126 | Msa0297830:intron | 15.0% |
| !! | ATGAAAATTGATCAAAATAT+TGG | - | chr2_3:51642155-51642174 | Msa0297830:intron | 15.0% |
| !! | TTAAAATCAAACCAATATAT+GGG | + | chr2_3:51642429-51642448 | None:intergenic | 15.0% |
| !! | ATTAAAATCAAACCAATATA+TGG | + | chr2_3:51642430-51642449 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGACTTTATTTT+TGG | - | chr2_3:51642677-51642696 | Msa0297830:intron | 15.0% |
| !!! | AAAAAAGTGACTTTATTTTT+GGG | - | chr2_3:51642678-51642697 | Msa0297830:intron | 15.0% |
| !! | ATGGATCTACTAAAATAATT+CGG | + | chr2_3:51641765-51641784 | None:intergenic | 20.0% |
| !!! | ATATTCTACACTTTTACTTA+TGG | + | chr2_3:51641784-51641803 | None:intergenic | 20.0% |
| !!! | TGCTAATTTAATTCAAGTTT+AGG | - | chr2_3:51641910-51641929 | Msa0297830:CDS | 20.0% |
| !!! | GGATTTGTTTAATTGATAAT+CGG | - | chr2_3:51641931-51641950 | Msa0297830:CDS | 20.0% |
| !!! | GTTTAACTTTAATTCAAGTT+TGG | - | chr2_3:51642106-51642125 | Msa0297830:intron | 20.0% |
| !!! | GATCAAAATATTGGTTTATT+TGG | - | chr2_3:51642164-51642183 | Msa0297830:intron | 20.0% |
| !!! | AAATATTGGTTTATTTGGAT+TGG | - | chr2_3:51642169-51642188 | Msa0297830:intron | 20.0% |
| !! | AATAGTTTATGCAAATTCAT+AGG | - | chr2_3:51642343-51642362 | Msa0297830:intron | 20.0% |
| !! | TAAAATCAAACCAATATATG+GGG | + | chr2_3:51642428-51642447 | None:intergenic | 20.0% |
| !!! | GTATATTTTTTTACTGTTGA+AGG | - | chr2_3:51642565-51642584 | Msa0297830:intron | 20.0% |
| !!! | AATTTTGAAACTTACATCAT+CGG | + | chr2_3:51642936-51642955 | None:intergenic | 20.0% |
| !! | ATTCAGCTTATTTGATTAAA+AGG | - | chr2_3:51643036-51643055 | Msa0297830:intron | 20.0% |
| !! | ATTGTCTTAATATTATTGCA+TGG | - | chr2_3:51643339-51643358 | Msa0297830:five_prime_UTR | 20.0% |
| !! | ATGGATCTACTAAAATAATT+CGG | + | chr2_3:51641765-51641784 | None:intergenic | 20.0% |
| !!! | ATATTCTACACTTTTACTTA+TGG | + | chr2_3:51641784-51641803 | None:intergenic | 20.0% |
| !!! | TGCTAATTTAATTCAAGTTT+AGG | - | chr2_3:51641910-51641929 | Msa0297830:CDS | 20.0% |
| !!! | GGATTTGTTTAATTGATAAT+CGG | - | chr2_3:51641931-51641950 | Msa0297830:CDS | 20.0% |
| !!! | GTTTAACTTTAATTCAAGTT+TGG | - | chr2_3:51642106-51642125 | Msa0297830:intron | 20.0% |
| !!! | GATCAAAATATTGGTTTATT+TGG | - | chr2_3:51642164-51642183 | Msa0297830:intron | 20.0% |
| !!! | AAATATTGGTTTATTTGGAT+TGG | - | chr2_3:51642169-51642188 | Msa0297830:intron | 20.0% |
| !! | AATAGTTTATGCAAATTCAT+AGG | - | chr2_3:51642343-51642362 | Msa0297830:intron | 20.0% |
| !! | TAAAATCAAACCAATATATG+GGG | + | chr2_3:51642428-51642447 | None:intergenic | 20.0% |
| !!! | GTATATTTTTTTACTGTTGA+AGG | - | chr2_3:51642565-51642584 | Msa0297830:intron | 20.0% |
| !!! | AATTTTGAAACTTACATCAT+CGG | + | chr2_3:51642936-51642955 | None:intergenic | 20.0% |
| !! | ATTCAGCTTATTTGATTAAA+AGG | - | chr2_3:51643036-51643055 | Msa0297830:intron | 20.0% |
| !! | ATTGTCTTAATATTATTGCA+TGG | - | chr2_3:51643339-51643358 | Msa0297830:five_prime_UTR | 20.0% |
| ! | TTAAAATCGATGAATGAACA+TGG | - | chr2_3:51641959-51641978 | Msa0297830:CDS | 25.0% |
| ! | TAAAATCGATGAATGAACAT+GGG | - | chr2_3:51641960-51641979 | Msa0297830:CDS | 25.0% |
| !!! | ATTTTAATTCAAGTTTGGGT+TGG | - | chr2_3:51642078-51642097 | Msa0297830:intron | 25.0% |
| !!! | TTTTAATTCAAGTTTGGGTT+GGG | - | chr2_3:51642079-51642098 | Msa0297830:intron | 25.0% |
| !!! | GCTTAGTTTTATACATTGTT+TGG | - | chr2_3:51642450-51642469 | Msa0297830:intron | 25.0% |
| !! | TTTTACTGTTGAAGGAAAAA+TGG | - | chr2_3:51642573-51642592 | Msa0297830:intron | 25.0% |
| !! | TAGTAGTATTGTTTGTTACT+TGG | - | chr2_3:51642958-51642977 | Msa0297830:intron | 25.0% |
| ! | TTTCAATTTAATCTGCGTTA+TGG | - | chr2_3:51643174-51643193 | Msa0297830:CDS | 25.0% |
| ! | TTAAAATCGATGAATGAACA+TGG | - | chr2_3:51641959-51641978 | Msa0297830:CDS | 25.0% |
| ! | TAAAATCGATGAATGAACAT+GGG | - | chr2_3:51641960-51641979 | Msa0297830:CDS | 25.0% |
| !!! | ATTTTAATTCAAGTTTGGGT+TGG | - | chr2_3:51642078-51642097 | Msa0297830:intron | 25.0% |
| !!! | TTTTAATTCAAGTTTGGGTT+GGG | - | chr2_3:51642079-51642098 | Msa0297830:intron | 25.0% |
| !!! | GCTTAGTTTTATACATTGTT+TGG | - | chr2_3:51642450-51642469 | Msa0297830:intron | 25.0% |
| !! | TTTTACTGTTGAAGGAAAAA+TGG | - | chr2_3:51642573-51642592 | Msa0297830:intron | 25.0% |
| !! | TAGTAGTATTGTTTGTTACT+TGG | - | chr2_3:51642958-51642977 | Msa0297830:intron | 25.0% |
| ! | TTTCAATTTAATCTGCGTTA+TGG | - | chr2_3:51643174-51643193 | Msa0297830:CDS | 25.0% |
| GATATCTTACTTGATGGAAA+TGG | + | chr2_3:51641457-51641476 | None:intergenic | 30.0% | |
| GAAATCGATATCTTACTTGA+TGG | + | chr2_3:51641463-51641482 | None:intergenic | 30.0% | |
| ! | AAACTTCACTCTTTTACGTT+TGG | - | chr2_3:51641491-51641510 | Msa0297830:three_prime_UTR | 30.0% |
| ! | AACTTCACTCTTTTACGTTT+GGG | - | chr2_3:51641492-51641511 | Msa0297830:three_prime_UTR | 30.0% |
| GCTGATCTTAAACAAATTCT+TGG | - | chr2_3:51641626-51641645 | Msa0297830:three_prime_UTR | 30.0% | |
| CTTAAACAAATTCTTGGATC+AGG | - | chr2_3:51641632-51641651 | Msa0297830:three_prime_UTR | 30.0% | |
| !!! | GCGTTTTTTGTTTGTTTTTC+CGG | - | chr2_3:51641723-51641742 | Msa0297830:three_prime_UTR | 30.0% |
| AAATAATCAATCCTAGACTG+TGG | - | chr2_3:51641866-51641885 | Msa0297830:CDS | 30.0% | |
| AATAATCAATCCTAGACTGT+GGG | - | chr2_3:51641867-51641886 | Msa0297830:CDS | 30.0% | |
| TATCTACTGTTAGACTGTTA+AGG | - | chr2_3:51642205-51642224 | Msa0297830:intron | 30.0% | |
| CCAGTCAATAAATATCAACT+TGG | + | chr2_3:51643368-51643387 | None:intergenic | 30.0% | |
| !! | CCAAGTTGATATTTATTGAC+TGG | - | chr2_3:51643365-51643384 | Msa0297830:five_prime_UTR | 30.0% |
| GATATCTTACTTGATGGAAA+TGG | + | chr2_3:51641457-51641476 | None:intergenic | 30.0% | |
| GAAATCGATATCTTACTTGA+TGG | + | chr2_3:51641463-51641482 | None:intergenic | 30.0% | |
| ! | AAACTTCACTCTTTTACGTT+TGG | - | chr2_3:51641491-51641510 | Msa0297830:three_prime_UTR | 30.0% |
| ! | AACTTCACTCTTTTACGTTT+GGG | - | chr2_3:51641492-51641511 | Msa0297830:three_prime_UTR | 30.0% |
| GCTGATCTTAAACAAATTCT+TGG | - | chr2_3:51641626-51641645 | Msa0297830:three_prime_UTR | 30.0% | |
| CTTAAACAAATTCTTGGATC+AGG | - | chr2_3:51641632-51641651 | Msa0297830:three_prime_UTR | 30.0% | |
| !!! | GCGTTTTTTGTTTGTTTTTC+CGG | - | chr2_3:51641723-51641742 | Msa0297830:three_prime_UTR | 30.0% |
| AAATAATCAATCCTAGACTG+TGG | - | chr2_3:51641866-51641885 | Msa0297830:CDS | 30.0% | |
| AATAATCAATCCTAGACTGT+GGG | - | chr2_3:51641867-51641886 | Msa0297830:CDS | 30.0% | |
| TATCTACTGTTAGACTGTTA+AGG | - | chr2_3:51642205-51642224 | Msa0297830:intron | 30.0% | |
| CCAGTCAATAAATATCAACT+TGG | + | chr2_3:51643368-51643387 | None:intergenic | 30.0% | |
| !! | CCAAGTTGATATTTATTGAC+TGG | - | chr2_3:51643365-51643384 | Msa0297830:five_prime_UTR | 30.0% |
| ATCTTACTTGATGGAAATGG+CGG | + | chr2_3:51641454-51641473 | None:intergenic | 35.0% | |
| TTATCTACTGTTGGACAGTT+TGG | - | chr2_3:51642009-51642028 | Msa0297830:CDS | 35.0% | |
| TATCTACTGTTGGACAGTTT+GGG | - | chr2_3:51642010-51642029 | Msa0297830:CDS | 35.0% | |
| AATCAAACAGCCCCATATAT+TGG | - | chr2_3:51642415-51642434 | Msa0297830:intron | 35.0% | |
| TTTGGGTCTATGATTGTAGT+TGG | - | chr2_3:51642695-51642714 | Msa0297830:intron | 35.0% | |
| TATGATTGTAGTTGGAGTTG+AGG | - | chr2_3:51642703-51642722 | Msa0297830:intron | 35.0% | |
| TGTTATCTTTGTGCAGGATA+TGG | - | chr2_3:51643012-51643031 | Msa0297830:intron | 35.0% | |
| GTTATCTTTGTGCAGGATAT+GGG | - | chr2_3:51643013-51643032 | Msa0297830:intron | 35.0% | |
| ATTCATGAATCTACCACTAG+AGG | + | chr2_3:51643261-51643280 | None:intergenic | 35.0% | |
| ATCTTACTTGATGGAAATGG+CGG | + | chr2_3:51641454-51641473 | None:intergenic | 35.0% | |
| TTATCTACTGTTGGACAGTT+TGG | - | chr2_3:51642009-51642028 | Msa0297830:CDS | 35.0% | |
| TATCTACTGTTGGACAGTTT+GGG | - | chr2_3:51642010-51642029 | Msa0297830:CDS | 35.0% | |
| AATCAAACAGCCCCATATAT+TGG | - | chr2_3:51642415-51642434 | Msa0297830:intron | 35.0% | |
| TTTGGGTCTATGATTGTAGT+TGG | - | chr2_3:51642695-51642714 | Msa0297830:intron | 35.0% | |
| TATGATTGTAGTTGGAGTTG+AGG | - | chr2_3:51642703-51642722 | Msa0297830:intron | 35.0% | |
| TGTTATCTTTGTGCAGGATA+TGG | - | chr2_3:51643012-51643031 | Msa0297830:intron | 35.0% | |
| GTTATCTTTGTGCAGGATAT+GGG | - | chr2_3:51643013-51643032 | Msa0297830:intron | 35.0% | |
| ATTCATGAATCTACCACTAG+AGG | + | chr2_3:51643261-51643280 | None:intergenic | 35.0% | |
| GATTATCGCAGCTTACTTGT+TGG | - | chr2_3:51641571-51641590 | Msa0297830:three_prime_UTR | 40.0% | |
| ! | TTTAAGATCAGCAGCTGAAG+GGG | + | chr2_3:51641618-51641637 | None:intergenic | 40.0% |
| ! | GTTTAAGATCAGCAGCTGAA+GGG | + | chr2_3:51641619-51641638 | None:intergenic | 40.0% |
| ! | TGTTTAAGATCAGCAGCTGA+AGG | + | chr2_3:51641620-51641639 | None:intergenic | 40.0% |
| CGGATACTAATCATCGAAAC+CGG | + | chr2_3:51641745-51641764 | None:intergenic | 40.0% | |
| CTTCATTATACCCACAGTCT+AGG | + | chr2_3:51641880-51641899 | None:intergenic | 40.0% | |
| TGAATGAACATGGGTCTGTT+TGG | - | chr2_3:51641969-51641988 | Msa0297830:CDS | 40.0% | |
| CGTTTGAGCTTATCTACTGT+TGG | - | chr2_3:51642000-51642019 | Msa0297830:CDS | 40.0% | |
| TTGCTCCTAAGTGAAGTCAA+GGG | - | chr2_3:51642746-51642765 | Msa0297830:intron | 40.0% | |
| GCGTAATGTTATCTTTGTGC+AGG | - | chr2_3:51643006-51643025 | Msa0297830:intron | 40.0% | |
| GATTATCGCAGCTTACTTGT+TGG | - | chr2_3:51641571-51641590 | Msa0297830:three_prime_UTR | 40.0% | |
| ! | TTTAAGATCAGCAGCTGAAG+GGG | + | chr2_3:51641618-51641637 | None:intergenic | 40.0% |
| ! | GTTTAAGATCAGCAGCTGAA+GGG | + | chr2_3:51641619-51641638 | None:intergenic | 40.0% |
| ! | TGTTTAAGATCAGCAGCTGA+AGG | + | chr2_3:51641620-51641639 | None:intergenic | 40.0% |
| CGGATACTAATCATCGAAAC+CGG | + | chr2_3:51641745-51641764 | None:intergenic | 40.0% | |
| CTTCATTATACCCACAGTCT+AGG | + | chr2_3:51641880-51641899 | None:intergenic | 40.0% | |
| TGAATGAACATGGGTCTGTT+TGG | - | chr2_3:51641969-51641988 | Msa0297830:CDS | 40.0% | |
| CGTTTGAGCTTATCTACTGT+TGG | - | chr2_3:51642000-51642019 | Msa0297830:CDS | 40.0% | |
| TTGCTCCTAAGTGAAGTCAA+GGG | - | chr2_3:51642746-51642765 | Msa0297830:intron | 40.0% | |
| GCGTAATGTTATCTTTGTGC+AGG | - | chr2_3:51643006-51643025 | Msa0297830:intron | 40.0% | |
| !! | AGCTTACTTGTTGGCCGTTT+TGG | - | chr2_3:51641580-51641599 | Msa0297830:three_prime_UTR | 45.0% |
| !! | GCTTACTTGTTGGCCGTTTT+GGG | - | chr2_3:51641581-51641600 | Msa0297830:three_prime_UTR | 45.0% |
| GAACATGGGTCTGTTTGGAT+TGG | - | chr2_3:51641974-51641993 | Msa0297830:CDS | 45.0% | |
| CAACTCAATGTTGCCATCCT+CGG | + | chr2_3:51642729-51642748 | None:intergenic | 45.0% | |
| GTTGCTCCTAAGTGAAGTCA+AGG | - | chr2_3:51642745-51642764 | Msa0297830:intron | 45.0% | |
| TCTTCCACTGGCAATAAGCT+CGG | + | chr2_3:51642783-51642802 | None:intergenic | 45.0% | |
| TGCCAGTGGAAGAGAAAAGT+TGG | - | chr2_3:51642790-51642809 | Msa0297830:intron | 45.0% | |
| ! | AGCCAACTTTTCTCTTCCAC+TGG | + | chr2_3:51642795-51642814 | None:intergenic | 45.0% |
| ! | AAGTTGGCTTCAGTTCCATC+CGG | - | chr2_3:51642806-51642825 | Msa0297830:intron | 45.0% |
| AGCAGCAAAGGAAGAGAAGA+AGG | - | chr2_3:51642892-51642911 | Msa0297830:intron | 45.0% | |
| AGCAAAGGAAGAGAAGAAGG+TGG | - | chr2_3:51642895-51642914 | Msa0297830:intron | 45.0% | |
| AGAGAAGAAGGTGGAAGAGA+AGG | - | chr2_3:51642904-51642923 | Msa0297830:intron | 45.0% | |
| ! | TCTCTCTTTTCCTCCTCTAG+TGG | - | chr2_3:51643245-51643264 | Msa0297830:intron | 45.0% |
| CATGAATCTACCACTAGAGG+AGG | + | chr2_3:51643258-51643277 | None:intergenic | 45.0% | |
| TTGACTGGTACACCAGATGT+AGG | - | chr2_3:51643380-51643399 | Msa0297830:five_prime_UTR | 45.0% | |
| TGACTGGTACACCAGATGTA+GGG | - | chr2_3:51643381-51643400 | Msa0297830:five_prime_UTR | 45.0% | |
| !! | AGCTTACTTGTTGGCCGTTT+TGG | - | chr2_3:51641580-51641599 | Msa0297830:three_prime_UTR | 45.0% |
| !! | GCTTACTTGTTGGCCGTTTT+GGG | - | chr2_3:51641581-51641600 | Msa0297830:three_prime_UTR | 45.0% |
| GAACATGGGTCTGTTTGGAT+TGG | - | chr2_3:51641974-51641993 | Msa0297830:CDS | 45.0% | |
| CAACTCAATGTTGCCATCCT+CGG | + | chr2_3:51642729-51642748 | None:intergenic | 45.0% | |
| GTTGCTCCTAAGTGAAGTCA+AGG | - | chr2_3:51642745-51642764 | Msa0297830:intron | 45.0% | |
| TCTTCCACTGGCAATAAGCT+CGG | + | chr2_3:51642783-51642802 | None:intergenic | 45.0% | |
| TGCCAGTGGAAGAGAAAAGT+TGG | - | chr2_3:51642790-51642809 | Msa0297830:intron | 45.0% | |
| ! | AGCCAACTTTTCTCTTCCAC+TGG | + | chr2_3:51642795-51642814 | None:intergenic | 45.0% |
| ! | AAGTTGGCTTCAGTTCCATC+CGG | - | chr2_3:51642806-51642825 | Msa0297830:intron | 45.0% |
| AGCAGCAAAGGAAGAGAAGA+AGG | - | chr2_3:51642892-51642911 | Msa0297830:intron | 45.0% | |
| AGCAAAGGAAGAGAAGAAGG+TGG | - | chr2_3:51642895-51642914 | Msa0297830:intron | 45.0% | |
| AGAGAAGAAGGTGGAAGAGA+AGG | - | chr2_3:51642904-51642923 | Msa0297830:intron | 45.0% | |
| ! | TCTCTCTTTTCCTCCTCTAG+TGG | - | chr2_3:51643245-51643264 | Msa0297830:intron | 45.0% |
| CATGAATCTACCACTAGAGG+AGG | + | chr2_3:51643258-51643277 | None:intergenic | 45.0% | |
| GAGATCTCGACTAGACGGTA+GGG | + | chr2_3:51641429-51641448 | None:intergenic | 50.0% | |
| TGAGATCTCGACTAGACGGT+AGG | + | chr2_3:51641430-51641449 | None:intergenic | 50.0% | |
| CGGATGAGATCTCGACTAGA+CGG | + | chr2_3:51641434-51641453 | None:intergenic | 50.0% | |
| !! | TACTTGTTGGCCGTTTTGGG+AGG | - | chr2_3:51641584-51641603 | Msa0297830:three_prime_UTR | 50.0% |
| !! | GGATTGGTTGCCTCCCAAAA+CGG | + | chr2_3:51641597-51641616 | None:intergenic | 50.0% |
| CCTTGCCCTTGACTTCACTT+AGG | + | chr2_3:51642754-51642773 | None:intergenic | 50.0% | |
| CCTAAGTGAAGTCAAGGGCA+AGG | - | chr2_3:51642751-51642770 | Msa0297830:intron | 50.0% | |
| TTTGCCGAGCTTATTGCCAG+TGG | - | chr2_3:51642776-51642795 | Msa0297830:intron | 50.0% | |
| ! | TCTTCCTTTGCTGCTTCAGC+AGG | + | chr2_3:51642887-51642906 | None:intergenic | 50.0% |
| GAGATCTCGACTAGACGGTA+GGG | + | chr2_3:51641429-51641448 | None:intergenic | 50.0% | |
| TGAGATCTCGACTAGACGGT+AGG | + | chr2_3:51641430-51641449 | None:intergenic | 50.0% | |
| CGGATGAGATCTCGACTAGA+CGG | + | chr2_3:51641434-51641453 | None:intergenic | 50.0% | |
| !! | TACTTGTTGGCCGTTTTGGG+AGG | - | chr2_3:51641584-51641603 | Msa0297830:three_prime_UTR | 50.0% |
| !! | GGATTGGTTGCCTCCCAAAA+CGG | + | chr2_3:51641597-51641616 | None:intergenic | 50.0% |
| CCTTGCCCTTGACTTCACTT+AGG | + | chr2_3:51642754-51642773 | None:intergenic | 50.0% | |
| CCTAAGTGAAGTCAAGGGCA+AGG | - | chr2_3:51642751-51642770 | Msa0297830:intron | 50.0% | |
| TTTGCCGAGCTTATTGCCAG+TGG | - | chr2_3:51642776-51642795 | Msa0297830:intron | 50.0% | |
| ! | TCTTCCTTTGCTGCTTCAGC+AGG | + | chr2_3:51642887-51642906 | None:intergenic | 50.0% |
| GACGGTAGGGTTTCACCAGA+GGG | + | chr2_3:51641416-51641435 | None:intergenic | 55.0% | |
| AGACGGTAGGGTTTCACCAG+AGG | + | chr2_3:51641417-51641436 | None:intergenic | 55.0% | |
| GATCAGCAGCTGAAGGGGAT+TGG | + | chr2_3:51641613-51641632 | None:intergenic | 55.0% | |
| TGTAGTTGGAGTTGAGGCCG+AGG | - | chr2_3:51642709-51642728 | Msa0297830:intron | 55.0% | |
| TTGGCTTCAGTTCCATCCGG+TGG | - | chr2_3:51642809-51642828 | Msa0297830:intron | 55.0% | |
| GTTGCTGTGTCTGCTGCAAC+TGG | - | chr2_3:51642839-51642858 | Msa0297830:intron | 55.0% | |
| GACGGTAGGGTTTCACCAGA+GGG | + | chr2_3:51641416-51641435 | None:intergenic | 55.0% | |
| AGACGGTAGGGTTTCACCAG+AGG | + | chr2_3:51641417-51641436 | None:intergenic | 55.0% | |
| GATCAGCAGCTGAAGGGGAT+TGG | + | chr2_3:51641613-51641632 | None:intergenic | 55.0% | |
| TGTAGTTGGAGTTGAGGCCG+AGG | - | chr2_3:51642709-51642728 | Msa0297830:intron | 55.0% | |
| TTGGCTTCAGTTCCATCCGG+TGG | - | chr2_3:51642809-51642828 | Msa0297830:intron | 55.0% | |
| GTTGCTGTGTCTGCTGCAAC+TGG | - | chr2_3:51642839-51642858 | Msa0297830:intron | 55.0% | |
| GTTGGAGTTGAGGCCGAGGA+TGG | - | chr2_3:51642713-51642732 | Msa0297830:intron | 60.0% | |
| GCTTCAGTTCCATCCGGTGG+TGG | - | chr2_3:51642812-51642831 | Msa0297830:intron | 60.0% | |
| CACAGCAACAGCACCACCAC+CGG | + | chr2_3:51642828-51642847 | None:intergenic | 60.0% | |
| GCTGTGTCTGCTGCAACTGG+AGG | - | chr2_3:51642842-51642861 | Msa0297830:intron | 60.0% | |
| GTGTCTGCTGCAACTGGAGG+AGG | - | chr2_3:51642845-51642864 | Msa0297830:intron | 60.0% | |
| TGCGCCTGCTGAAGCAGCAA+AGG | - | chr2_3:51642880-51642899 | Msa0297830:intron | 60.0% | |
| GTTGGAGTTGAGGCCGAGGA+TGG | - | chr2_3:51642713-51642732 | Msa0297830:intron | 60.0% | |
| GCTTCAGTTCCATCCGGTGG+TGG | - | chr2_3:51642812-51642831 | Msa0297830:intron | 60.0% | |
| CACAGCAACAGCACCACCAC+CGG | + | chr2_3:51642828-51642847 | None:intergenic | 60.0% | |
| GCTGTGTCTGCTGCAACTGG+AGG | - | chr2_3:51642842-51642861 | Msa0297830:intron | 60.0% | |
| GTGTCTGCTGCAACTGGAGG+AGG | - | chr2_3:51642845-51642864 | Msa0297830:intron | 60.0% | |
| TGCGCCTGCTGAAGCAGCAA+AGG | - | chr2_3:51642880-51642899 | Msa0297830:intron | 60.0% | |
| GCAACAGCACCACCACCGGA+TGG | + | chr2_3:51642824-51642843 | None:intergenic | 65.0% | |
| GCAACAGCACCACCACCGGA+TGG | + | chr2_3:51642824-51642843 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 51641399 | 51643402 | 51641399 | ID=Msa0297830;Name=Msa0297830 |
| chr2_3 | mRNA | 51641399 | 51643402 | 51641399 | ID=Msa0297830-mRNA-1;Parent=Msa0297830;Name=Msa0297830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70|1|1|1|0.66|0.5|4|348|113 |
| chr2_3 | exon | 51641399 | 51641773 | 51641399 | ID=Msa0297830-mRNA-1:exon:16431;Parent=Msa0297830-mRNA-1 |
| chr2_3 | exon | 51641861 | 51642087 | 51641861 | ID=Msa0297830-mRNA-1:exon:16430;Parent=Msa0297830-mRNA-1 |
| chr2_3 | exon | 51643148 | 51643237 | 51643148 | ID=Msa0297830-mRNA-1:exon:16429;Parent=Msa0297830-mRNA-1 |
| chr2_3 | exon | 51643335 | 51643402 | 51643335 | ID=Msa0297830-mRNA-1:exon:16428;Parent=Msa0297830-mRNA-1 |
| chr2_3 | five_prime_UTR | 51643335 | 51643402 | 51643335 | ID=Msa0297830-mRNA-1:five_prime_utr;Parent=Msa0297830-mRNA-1 |
| chr2_3 | five_prime_UTR | 51643236 | 51643237 | 51643236 | ID=Msa0297830-mRNA-1:five_prime_utr;Parent=Msa0297830-mRNA-1 |
| chr2_3 | CDS | 51643148 | 51643235 | 51643148 | ID=Msa0297830-mRNA-1:cds;Parent=Msa0297830-mRNA-1 |
| chr2_3 | CDS | 51641861 | 51642087 | 51641861 | ID=Msa0297830-mRNA-1:cds;Parent=Msa0297830-mRNA-1 |
| chr2_3 | CDS | 51641747 | 51641773 | 51641747 | ID=Msa0297830-mRNA-1:cds;Parent=Msa0297830-mRNA-1 |
| chr2_3 | three_prime_UTR | 51641399 | 51641746 | 51641399 | ID=Msa0297830-mRNA-1:three_prime_utr;Parent=Msa0297830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
