Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786660 | NP_001365661.1 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 3.25e-129 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786660 | sp|Q9ATF5|RL18A_CASSA | 89.888 | 178 | 18 | 0 | 1 | 178 | 1 | 178 | 4.25e-119 | 337 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786660 | B7FJC3 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 1.55e-129 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042480 | Msa0786660 | 0.804813 | 1.803879e-49 | -8.615850e-47 |
| Msa0712610 | Msa0786660 | 0.826010 | 3.430108e-54 | -8.615850e-47 |
| Msa0781310 | Msa0786660 | 0.832447 | 9.405099e-56 | -8.615850e-47 |
| Msa0783630 | Msa0786660 | 0.822176 | 2.724846e-53 | -8.615850e-47 |
| Msa0786660 | Msa0788380 | 0.815660 | 8.251897e-52 | -8.615850e-47 |
| Msa0786660 | Msa0822580 | 0.859455 | 4.088623e-63 | -8.615850e-47 |
| Msa0786660 | Msa0860860 | 0.810233 | 1.276499e-50 | -8.615850e-47 |
| Msa0786660 | Msa0945480 | 0.809424 | 1.905290e-50 | -8.615850e-47 |
| Msa0786660 | Msa0966670 | 0.823611 | 1.262183e-53 | -8.615850e-47 |
| Msa0786660 | Msa1037290 | 0.838318 | 3.087188e-57 | -8.615850e-47 |
| Msa0786660 | Msa1082170 | 0.819560 | 1.089244e-52 | -8.615850e-47 |
| Msa0786660 | Msa1126520 | 0.835616 | 1.513045e-56 | -8.615850e-47 |
| Msa0786660 | Msa1164150 | 0.823027 | 1.727213e-53 | -8.615850e-47 |
| Msa0786660 | Msa1183450 | 0.823315 | 1.480221e-53 | -8.615850e-47 |
| Msa0786660 | Msa1218170 | 0.803420 | 3.515746e-49 | -8.615850e-47 |
| Msa0786660 | Msa1240270 | 0.816246 | 6.103332e-52 | -8.615850e-47 |
| Msa0786660 | Msa1258540 | 0.807989 | 3.859398e-50 | -8.615850e-47 |
| Msa0786660 | Msa1311400 | 0.807788 | 4.259672e-50 | -8.615850e-47 |
| Msa0786660 | Msa1332250 | 0.809604 | 1.742968e-50 | -8.615850e-47 |
| Msa0786660 | Msa1352140 | 0.835391 | 1.724027e-56 | -8.615850e-47 |
| Msa0786660 | Msa1356790 | 0.822604 | 2.167159e-53 | -8.615850e-47 |
| Msa0786660 | Msa1368920 | 0.836598 | 8.519483e-57 | -8.615850e-47 |
| Msa0786660 | Msa1392590 | 0.862655 | 4.345513e-64 | -8.615850e-47 |
| Msa0138890 | Msa0786660 | 0.811093 | 8.318652e-51 | -8.615850e-47 |
| Msa0210360 | Msa0786660 | 0.819207 | 1.310705e-52 | -8.615850e-47 |
| Msa0269180 | Msa0786660 | 0.844277 | 8.352224e-59 | -8.615850e-47 |
| Msa0335840 | Msa0786660 | 0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0573500 | Msa0786660 | 0.826747 | 2.289861e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786660 | MtrunA17_Chr5g0442931 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 2.99e-133 | 370 |
| Msa0786660 | MtrunA17_Chr5g0442901 | 100.000 | 178 | 0 | 0 | 1 | 178 | 1 | 178 | 2.99e-133 | 370 |
| Msa0786660 | MtrunA17_Chr2g0328821 | 100.000 | 178 | 0 | 0 | 1 | 178 | 17 | 194 | 3.33e-133 | 370 |
| Msa0786660 | MtrunA17_Chr3g0095911 | 94.382 | 178 | 10 | 0 | 1 | 178 | 1 | 178 | 2.58e-125 | 350 |
| Msa0786660 | MtrunA17_Chr2g0286131 | 62.353 | 85 | 32 | 0 | 92 | 176 | 1 | 85 | 2.93e-34 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0786660 | AT2G34480.1 | 90.230 | 174 | 17 | 0 | 5 | 178 | 5 | 178 | 3.01e-119 | 335 |
| Msa0786660 | AT2G34480.2 | 90.230 | 174 | 17 | 0 | 5 | 178 | 44 | 217 | 3.24e-119 | 336 |
| Msa0786660 | AT1G29965.1 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 1.24e-117 | 330 |
| Msa0786660 | AT3G14600.1 | 87.079 | 178 | 23 | 0 | 1 | 178 | 1 | 178 | 4.20e-117 | 329 |
| Msa0786660 | AT1G29970.2 | 89.017 | 173 | 19 | 0 | 6 | 178 | 140 | 312 | 1.08e-114 | 328 |
Find 59 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAAACTTACCAGAATT+TGG | 0.159052 | 5_2:+72235169 | None:intergenic |
| CACCAGAGGGAACTTGATTT+TGG | 0.187302 | 5_2:+72233402 | None:intergenic |
| CATAAACAGGTTGGGCTTCT+TGG | 0.201042 | 5_2:+72233330 | None:intergenic |
| AGATTAAGAACTATGGAATT+TGG | 0.243479 | 5_2:-72233624 | Msa0786660:CDS |
| GAAAAGTAATGGACAAGTTT+TGG | 0.246012 | 5_2:-72235020 | Msa0786660:CDS |
| GTTGGGCTTCTTGGCTTTGT+AGG | 0.248408 | 5_2:+72233339 | None:intergenic |
| CACATTTCGCTTCTCATATT+GGG | 0.263107 | 5_2:-72233294 | Msa0786660:three_prime_UTR |
| TCACATTTCGCTTCTCATAT+TGG | 0.265029 | 5_2:-72233295 | Msa0786660:three_prime_UTR |
| TGTTTGTGCACTCTTATTGC+TGG | 0.314155 | 5_2:-72233038 | Msa0786660:three_prime_UTR |
| AGATTTATCGCATGAAGCTT+TGG | 0.341025 | 5_2:-72235217 | Msa0786660:CDS |
| AACTTACCAGAATTTGGATT+TGG | 0.348831 | 5_2:+72235175 | None:intergenic |
| ACGAGATGGCATCTCGTCAT+AGG | 0.358917 | 5_2:-72233513 | Msa0786660:CDS |
| CCTACCAAGATTAAGAACTA+TGG | 0.366976 | 5_2:-72233631 | Msa0786660:CDS |
| GATTTATCGCATGAAGCTTT+GGG | 0.367321 | 5_2:-72235216 | Msa0786660:CDS |
| TTCGTGCCAAATCCAAATTC+TGG | 0.381119 | 5_2:-72235181 | Msa0786660:intron |
| AAGCTTCATGCGATAAATCT+TGG | 0.383045 | 5_2:+72235220 | None:intergenic |
| TCCCGGCTAATTTGTGCAAA+AGG | 0.385678 | 5_2:-72233450 | Msa0786660:CDS |
| AATTCCATAGTTCTTAATCT+TGG | 0.403701 | 5_2:+72233627 | None:intergenic |
| ATTCACTGAATCACATAAAC+AGG | 0.404006 | 5_2:+72233317 | None:intergenic |
| GCTCATTAGCTATGAGCATC+TGG | 0.427165 | 5_2:+72232997 | None:intergenic |
| AGAAGATAAAACAAAATTCT+CGG | 0.437500 | 5_2:+72233163 | None:intergenic |
| TACCGTGATACTACTCTAAA+CGG | 0.441043 | 5_2:-72233556 | Msa0786660:CDS |
| GGATTTGGCACGAACCTCAT+TGG | 0.442665 | 5_2:+72235190 | None:intergenic |
| AGTCTTAATGATTTGAATGC+AGG | 0.447032 | 5_2:+72233480 | None:intergenic |
| CTCTGGTGTACAAGAAGATT+AGG | 0.461451 | 5_2:-72233387 | Msa0786660:CDS |
| AGCTTCATGCGATAAATCTT+GGG | 0.476384 | 5_2:+72235221 | None:intergenic |
| CTGAATCACATAAACAGGTT+GGG | 0.486125 | 5_2:+72233322 | None:intergenic |
| CTCTTCCAACAACCTGGTAC+TGG | 0.489846 | 5_2:+72235270 | None:intergenic |
| TTTCTTGAGGAAGTTGAAGA+AGG | 0.490067 | 5_2:-72235047 | Msa0786660:CDS |
| TGGCATCTCGTCATAGGGTC+AGG | 0.497058 | 5_2:-72233507 | Msa0786660:CDS |
| TTTCACCAGTACCAGGTTGT+TGG | 0.499494 | 5_2:-72235275 | Msa0786660:CDS |
| CCCGGCTAATTTGTGCAAAA+GGG | 0.504144 | 5_2:-72233449 | Msa0786660:CDS |
| TTGCGTTATCAGAGTCGTAC+TGG | 0.505845 | 5_2:-72233601 | Msa0786660:CDS |
| AAGAAGGTTAAGAAAAGTAA+TGG | 0.518066 | 5_2:-72235031 | Msa0786660:CDS |
| ACTACAATCAGCAGCGTTCA+CGG | 0.525094 | 5_2:-72235419 | Msa0786660:five_prime_UTR |
| GTTTGTGCACTCTTATTGCT+GGG | 0.537088 | 5_2:-72233037 | Msa0786660:three_prime_UTR |
| TGGGAAGAACAAAGTTGTGT+TGG | 0.537271 | 5_2:-72232960 | Msa0786660:three_prime_UTR |
| AAGAGCACTTCCCACCGAAA+AGG | 0.541834 | 5_2:-72235252 | Msa0786660:CDS |
| CGAGATGGCATCTCGTCATA+GGG | 0.544710 | 5_2:-72233512 | Msa0786660:CDS |
| CCATAGTTCTTAATCTTGGT+AGG | 0.548600 | 5_2:+72233631 | None:intergenic |
| GAAACAGTTTCACCAGTACC+AGG | 0.549157 | 5_2:-72235282 | Msa0786660:intron |
| TTCCAAAATCAAGTTCCCTC+TGG | 0.549470 | 5_2:-72233404 | Msa0786660:CDS |
| TTTGCACAAATTAGCCGGGA+TGG | 0.551631 | 5_2:+72233453 | None:intergenic |
| ACTGAATCACATAAACAGGT+TGG | 0.563649 | 5_2:+72233321 | None:intergenic |
| GTCTTAATGATTTGAATGCA+GGG | 0.566014 | 5_2:+72233481 | None:intergenic |
| ATGCTCATAGCTAATGAGCT+AGG | 0.567864 | 5_2:-72232993 | Msa0786660:three_prime_UTR |
| CATTAAGACTGCCACCATCC+CGG | 0.574553 | 5_2:-72233467 | Msa0786660:CDS |
| ATTCTCGGTAAGTAACAACT+AGG | 0.600835 | 5_2:+72233178 | None:intergenic |
| AGAAGATTAGGCCACCAACT+AGG | 0.603627 | 5_2:-72233375 | Msa0786660:CDS |
| TGGTTATCACAATATGTACA+AGG | 0.613559 | 5_2:-72233581 | Msa0786660:CDS |
| GAAGTGCTCTTCCAACAACC+TGG | 0.619307 | 5_2:+72235264 | None:intergenic |
| GCACAAATTAGCCGGGATGG+TGG | 0.625128 | 5_2:+72233456 | None:intergenic |
| GAAGCTTTGGGCAACCAATG+AGG | 0.630309 | 5_2:-72235204 | Msa0786660:CDS |
| CTAATCTTCTTGTACACCAG+AGG | 0.631597 | 5_2:+72233388 | None:intergenic |
| TAATCTTCTTGTACACCAGA+GGG | 0.642722 | 5_2:+72233389 | None:intergenic |
| ATTGTTGTAGGTATTTCTTG+AGG | 0.651477 | 5_2:-72235060 | Msa0786660:intron |
| GGAGACAATGTACAACGAGA+TGG | 0.663821 | 5_2:-72233527 | Msa0786660:CDS |
| CGCCGTTTAGAGTAGTATCA+CGG | 0.671590 | 5_2:+72233554 | None:intergenic |
| TACTACTCTAAACGGCGCTG+TGG | 0.679213 | 5_2:-72233548 | Msa0786660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAATGTTAATTGTTGT+AGG | - | chr5_2:72233310-72233329 | Msa0786660:exon | 15.0% |
| !! | ATTAATTGAAATTTGATAGA+AGG | - | chr5_2:72233412-72233431 | Msa0786660:CDS | 15.0% |
| !! | TTAATTGAAATTTGATAGAA+GGG | - | chr5_2:72233413-72233432 | Msa0786660:CDS | 15.0% |
| !! | AAAGCAACAAATAAAAAAAA+CGG | + | chr5_2:72234231-72234250 | None:intergenic | 15.0% |
| !! | GTAAATAAAAACAAATAAGC+TGG | + | chr5_2:72233490-72233509 | None:intergenic | 20.0% |
| !! | GGATAGAAAAAAATAATGAT+AGG | - | chr5_2:72233688-72233707 | Msa0786660:intron | 20.0% |
| !! | ATATTAGTATATTGTACAGT+TGG | - | chr5_2:72233759-72233778 | Msa0786660:intron | 20.0% |
| !!! | ATTTTAAGTAGATAGTACTT+TGG | - | chr5_2:72234292-72234311 | Msa0786660:intron | 20.0% |
| !! | AGTCACAATATACAATTTAA+AGG | + | chr5_2:72234520-72234539 | None:intergenic | 20.0% |
| !! | AGAAGATAAAACAAAATTCT+CGG | + | chr5_2:72235222-72235241 | None:intergenic | 20.0% |
| ! | CAAAATAAAATCAGTTCAGA+AGG | + | chr5_2:72233048-72233067 | None:intergenic | 25.0% |
| ! | AAGAAGGTTAAGAAAAGTAA+TGG | - | chr5_2:72233351-72233370 | Msa0786660:CDS | 25.0% |
| ! | ATTTATACTTAGACTGTGTT+TGG | - | chr5_2:72233451-72233470 | Msa0786660:CDS | 25.0% |
| !! | TGCATGTAAAAGCTTTTATT+TGG | - | chr5_2:72233592-72233611 | Msa0786660:CDS | 25.0% |
| !! | TCTATTTCTCTCATAAATAG+AGG | - | chr5_2:72233916-72233935 | Msa0786660:intron | 25.0% |
| !! | CTATTTCTCTCATAAATAGA+GGG | - | chr5_2:72233917-72233936 | Msa0786660:intron | 25.0% |
| !! | ATGTAATATCTGTCAGTTTT+TGG | - | chr5_2:72234007-72234026 | Msa0786660:intron | 25.0% |
| ! | TGAGAAAATTAAGTTTGATG+CGG | - | chr5_2:72234201-72234220 | Msa0786660:intron | 25.0% |
| ! | TTATGTTGAAATCCAAACAT+AGG | - | chr5_2:72234456-72234475 | Msa0786660:intron | 25.0% |
| ! | AATTCCATAGTTCTTAATCT+TGG | + | chr5_2:72234758-72234777 | None:intergenic | 25.0% |
| ! | AGATTAAGAACTATGGAATT+TGG | - | chr5_2:72234758-72234777 | Msa0786660:intron | 25.0% |
| !! | TTTTTCTCTTTATGATGTAC+TGG | - | chr5_2:72235259-72235278 | Msa0786660:CDS | 25.0% |
| AATAAAATCAGTTCAGAAGG+TGG | + | chr5_2:72233045-72233064 | None:intergenic | 30.0% | |
| ! | ATTTTGTGTGAATCGTAACA+CGG | - | chr5_2:72233062-72233081 | Msa0786660:three_prime_UTR | 30.0% |
| AACTTACCAGAATTTGGATT+TGG | + | chr5_2:72233210-72233229 | None:intergenic | 30.0% | |
| ATCAGAAACTTACCAGAATT+TGG | + | chr5_2:72233216-72233235 | None:intergenic | 30.0% | |
| ATTGTTGTAGGTATTTCTTG+AGG | - | chr5_2:72233322-72233341 | Msa0786660:exon | 30.0% | |
| !!! | GAAAAGTAATGGACAAGTTT+TGG | - | chr5_2:72233362-72233381 | Msa0786660:CDS | 30.0% |
| TAAACAAGTGCTTATAAGGT+AGG | + | chr5_2:72233624-72233643 | None:intergenic | 30.0% | |
| TGGTTAAACAAGTGCTTATA+AGG | + | chr5_2:72233628-72233647 | None:intergenic | 30.0% | |
| TGTGGAGTTAATGTTAAGTT+GGG | - | chr5_2:72233667-72233686 | Msa0786660:intron | 30.0% | |
| !! | AGAGGAGAAAGTTATTTCTT+AGG | - | chr5_2:72233733-72233752 | Msa0786660:intron | 30.0% |
| TTGTGTCTATCTCTCATAAA+TGG | + | chr5_2:72233859-72233878 | None:intergenic | 30.0% | |
| ACAACCAGAATATCATTAGA+GGG | + | chr5_2:72233895-72233914 | None:intergenic | 30.0% | |
| TTCTGCTAAAGACAACAAAA+AGG | + | chr5_2:72234052-72234071 | None:intergenic | 30.0% | |
| TAAGTAGATAGTACTTTGGT+TGG | - | chr5_2:72234296-72234315 | Msa0786660:intron | 30.0% | |
| !! | ATAGTACTTTGGTTGGTAAA+GGG | - | chr5_2:72234303-72234322 | Msa0786660:intron | 30.0% |
| AAATGATGTATTGCCATAAC+TGG | + | chr5_2:72234485-72234504 | None:intergenic | 30.0% | |
| AATTGTTGTGAGAGAATTCT+TGG | - | chr5_2:72234619-72234638 | Msa0786660:intron | 30.0% | |
| TAATAGCTAAAGCAAACACA+GGG | + | chr5_2:72234655-72234674 | None:intergenic | 30.0% | |
| ! | ACCTTCAATTTCCATCTTTT+TGG | - | chr5_2:72234679-72234698 | Msa0786660:intron | 30.0% |
| TCCAAAAAGATGGAAATTGA+AGG | + | chr5_2:72234683-72234702 | None:intergenic | 30.0% | |
| ! | ATTTCCATCTTTTTGGACAT+AGG | - | chr5_2:72234686-72234705 | Msa0786660:intron | 30.0% |
| ! | TTTCCATCTTTTTGGACATA+GGG | - | chr5_2:72234687-72234706 | Msa0786660:intron | 30.0% |
| TGGTTATCACAATATGTACA+AGG | - | chr5_2:72234801-72234820 | Msa0786660:intron | 30.0% | |
| GTCTTAATGATTTGAATGCA+GGG | + | chr5_2:72234904-72234923 | None:intergenic | 30.0% | |
| AGTCTTAATGATTTGAATGC+AGG | + | chr5_2:72234905-72234924 | None:intergenic | 30.0% | |
| ATTCACTGAATCACATAAAC+AGG | + | chr5_2:72235068-72235087 | None:intergenic | 30.0% | |
| !!! | TAGCGATCACTTTATTTTGA+AGG | - | chr5_2:72235302-72235321 | Msa0786660:intron | 30.0% |
| !!! | GATCACTTTATTTTGAAGGA+GGG | - | chr5_2:72235306-72235325 | Msa0786660:intron | 30.0% |
| AGCAAAAATGGTTAACGCTA+AGG | - | chr5_2:72232990-72233009 | Msa0786660:three_prime_UTR | 35.0% | |
| ! | TTTTGTGTGAATCGTAACAC+GGG | - | chr5_2:72233063-72233082 | Msa0786660:three_prime_UTR | 35.0% |
| AGCTTCATGCGATAAATCTT+GGG | + | chr5_2:72233164-72233183 | None:intergenic | 35.0% | |
| AAGCTTCATGCGATAAATCT+TGG | + | chr5_2:72233165-72233184 | None:intergenic | 35.0% | |
| AGATTTATCGCATGAAGCTT+TGG | - | chr5_2:72233165-72233184 | Msa0786660:three_prime_UTR | 35.0% | |
| GATTTATCGCATGAAGCTTT+GGG | - | chr5_2:72233166-72233185 | Msa0786660:three_prime_UTR | 35.0% | |
| TTTCTTGAGGAAGTTGAAGA+AGG | - | chr5_2:72233335-72233354 | Msa0786660:CDS | 35.0% | |
| !!! | ACAAGTTTTGGCTATCAATG+AGG | - | chr5_2:72233374-72233393 | Msa0786660:CDS | 35.0% |
| TACTTAGACTGTGTTTGGAT+TGG | - | chr5_2:72233456-72233475 | Msa0786660:CDS | 35.0% | |
| !! | TAACTCCACAGCTGTTTTAA+GGG | + | chr5_2:72233657-72233676 | None:intergenic | 35.0% |
| !! | TTAACTCCACAGCTGTTTTA+AGG | + | chr5_2:72233658-72233677 | None:intergenic | 35.0% |
| CTGTGGAGTTAATGTTAAGT+TGG | - | chr5_2:72233666-72233685 | Msa0786660:intron | 35.0% | |
| CATAAATGGAGGTAAATGGA+TGG | + | chr5_2:72233845-72233864 | None:intergenic | 35.0% | |
| CTCTCATAAATGGAGGTAAA+TGG | + | chr5_2:72233849-72233868 | None:intergenic | 35.0% | |
| TGTCTATCTCTCATAAATGG+AGG | + | chr5_2:72233856-72233875 | None:intergenic | 35.0% | |
| CACAACCAGAATATCATTAG+AGG | + | chr5_2:72233896-72233915 | None:intergenic | 35.0% | |
| AGAGCAAACTTGAACTCATT+TGG | - | chr5_2:72233949-72233968 | Msa0786660:intron | 35.0% | |
| !! | GATAGTACTTTGGTTGGTAA+AGG | - | chr5_2:72234302-72234321 | Msa0786660:intron | 35.0% |
| TGTTCTGTTGTGATTATTGC+TGG | - | chr5_2:72234355-72234374 | Msa0786660:intron | 35.0% | |
| GTTCTGTTGTGATTATTGCT+GGG | - | chr5_2:72234356-72234375 | Msa0786660:intron | 35.0% | |
| CATAACTGGTTACCTATGTT+TGG | + | chr5_2:72234471-72234490 | None:intergenic | 35.0% | |
| CAAACATAGGTAACCAGTTA+TGG | - | chr5_2:72234469-72234488 | Msa0786660:intron | 35.0% | |
| GTAATAGCTAAAGCAAACAC+AGG | + | chr5_2:72234656-72234675 | None:intergenic | 35.0% | |
| ! | TTCCATCTTTTTGGACATAG+GGG | - | chr5_2:72234688-72234707 | Msa0786660:intron | 35.0% |
| CCATAGTTCTTAATCTTGGT+AGG | + | chr5_2:72234754-72234773 | None:intergenic | 35.0% | |
| CCTACCAAGATTAAGAACTA+TGG | - | chr5_2:72234751-72234770 | Msa0786660:intron | 35.0% | |
| TACCGTGATACTACTCTAAA+CGG | - | chr5_2:72234826-72234845 | Msa0786660:intron | 35.0% | |
| TAATCTTCTTGTACACCAGA+GGG | + | chr5_2:72234996-72235015 | None:intergenic | 35.0% | |
| !!! | TGGCTTTGTAGGTTGTTTTT+AGG | + | chr5_2:72235035-72235054 | None:intergenic | 35.0% |
| CTGAATCACATAAACAGGTT+GGG | + | chr5_2:72235063-72235082 | None:intergenic | 35.0% | |
| ACTGAATCACATAAACAGGT+TGG | + | chr5_2:72235064-72235083 | None:intergenic | 35.0% | |
| TCACATTTCGCTTCTCATAT+TGG | - | chr5_2:72235087-72235106 | Msa0786660:intron | 35.0% | |
| CACATTTCGCTTCTCATATT+GGG | - | chr5_2:72235088-72235107 | Msa0786660:intron | 35.0% | |
| ATTCTCGGTAAGTAACAACT+AGG | + | chr5_2:72235207-72235226 | None:intergenic | 35.0% | |
| !!! | CGATCACTTTATTTTGAAGG+AGG | - | chr5_2:72235305-72235324 | Msa0786660:intron | 35.0% |
| ACTCTTATTGCTGGGAAAAA+AGG | - | chr5_2:72235353-72235372 | Msa0786660:intron | 35.0% | |
| TTATTGCTGGGAAAAAAGGA+AGG | - | chr5_2:72235357-72235376 | Msa0786660:intron | 35.0% | |
| GTTCACGGTCATAGCAAAAA+TGG | - | chr5_2:72232978-72232997 | Msa0786660:three_prime_UTR | 40.0% | |
| ! | CTTGGGATGTTCATCCTTTT+CGG | + | chr5_2:72233147-72233166 | None:intergenic | 40.0% |
| TTCGTGCCAAATCCAAATTC+TGG | - | chr5_2:72233201-72233220 | Msa0786660:three_prime_UTR | 40.0% | |
| TACTTGCATAAGCGCTTATG+AGG | - | chr5_2:72233507-72233526 | Msa0786660:CDS | 40.0% | |
| !!! | AGCTGTTTTAAGGGACTGTT+TGG | + | chr5_2:72233648-72233667 | None:intergenic | 40.0% |
| ! | GAGTATAATTTTGCACCCTG+TGG | - | chr5_2:72233710-72233729 | Msa0786660:intron | 40.0% |
| ATAACTTTCTCCTCTCCACA+GGG | + | chr5_2:72233728-72233747 | None:intergenic | 40.0% | |
| AATAACTTTCTCCTCTCCAC+AGG | + | chr5_2:72233729-72233748 | None:intergenic | 40.0% | |
| ATGCTTAGAGAGACTCTCTT+CGG | - | chr5_2:72233802-72233821 | Msa0786660:intron | 40.0% | |
| GATAGACACAAACGATAGAG+TGG | - | chr5_2:72233868-72233887 | Msa0786660:intron | 40.0% | |
| TGGACCCTCTAATGATATTC+TGG | - | chr5_2:72233888-72233907 | Msa0786660:intron | 40.0% | |
| GCAAACTTGAACTCATTTGG+CGG | - | chr5_2:72233952-72233971 | Msa0786660:intron | 40.0% | |
| CAAACTTGAACTCATTTGGC+GGG | - | chr5_2:72233953-72233972 | Msa0786660:intron | 40.0% | |
| AAACTTGAACTCATTTGGCG+GGG | - | chr5_2:72233954-72233973 | Msa0786660:intron | 40.0% | |
| !! | ATTTGGCGGGGATTTGATTT+TGG | - | chr5_2:72233966-72233985 | Msa0786660:intron | 40.0% |
| TGTAACCTTTCCCTAAGTCA+TGG | - | chr5_2:72234138-72234157 | Msa0786660:intron | 40.0% | |
| CTAGATTCCACCATGACTTA+GGG | + | chr5_2:72234151-72234170 | None:intergenic | 40.0% | |
| !! | TACTTTGGTTGGTAAAGGGA+AGG | - | chr5_2:72234307-72234326 | Msa0786660:intron | 40.0% |
| TGTGAGAGAATTCTTGGACT+AGG | - | chr5_2:72234625-72234644 | Msa0786660:intron | 40.0% | |
| AACCCCTATGTCCAAAAAGA+TGG | + | chr5_2:72234693-72234712 | None:intergenic | 40.0% | |
| ! | TCCCTTTTGCACAAATTAGC+CGG | + | chr5_2:72234937-72234956 | None:intergenic | 40.0% |
| TTCCAAAATCAAGTTCCCTC+TGG | - | chr5_2:72234978-72234997 | Msa0786660:intron | 40.0% | |
| CTAATCTTCTTGTACACCAG+AGG | + | chr5_2:72234997-72235016 | None:intergenic | 40.0% | |
| CTCTGGTGTACAAGAAGATT+AGG | - | chr5_2:72234995-72235014 | Msa0786660:intron | 40.0% | |
| !!! | GTTGTTTTTAGGCTCCTAGT+TGG | + | chr5_2:72235024-72235043 | None:intergenic | 40.0% |
| TGTTTGTGCACTCTTATTGC+TGG | - | chr5_2:72235344-72235363 | Msa0786660:intron | 40.0% | |
| GTTTGTGCACTCTTATTGCT+GGG | - | chr5_2:72235345-72235364 | Msa0786660:intron | 40.0% | |
| ATGCTCATAGCTAATGAGCT+AGG | - | chr5_2:72235389-72235408 | Msa0786660:intron | 40.0% | |
| ! | ATGAGCTAGGTTTTGCGAAA+TGG | - | chr5_2:72235402-72235421 | Msa0786660:exon | 40.0% |
| ! | TGAGCTAGGTTTTGCGAAAT+GGG | - | chr5_2:72235403-72235422 | Msa0786660:exon | 40.0% |
| TGGGAAGAACAAAGTTGTGT+TGG | - | chr5_2:72235422-72235441 | Msa0786660:five_prime_UTR | 40.0% | |
| ACTACAATCAGCAGCGTTCA+CGG | - | chr5_2:72232963-72232982 | Msa0786660:three_prime_UTR | 45.0% | |
| GAAACAGTTTCACCAGTACC+AGG | - | chr5_2:72233100-72233119 | Msa0786660:three_prime_UTR | 45.0% | |
| TTTCACCAGTACCAGGTTGT+TGG | - | chr5_2:72233107-72233126 | Msa0786660:three_prime_UTR | 45.0% | |
| ! | GGATGTTCATCCTTTTCGGT+GGG | + | chr5_2:72233143-72233162 | None:intergenic | 45.0% |
| ACAGTCCCTTAAAACAGCTG+TGG | - | chr5_2:72233649-72233668 | Msa0786660:CDS | 45.0% | |
| ! | TAATTTTGCACCCTGTGGAG+AGG | - | chr5_2:72233715-72233734 | Msa0786660:intron | 45.0% |
| AACCTTTCCCTAAGTCATGG+TGG | - | chr5_2:72234141-72234160 | Msa0786660:intron | 45.0% | |
| TTCCACCATGACTTAGGGAA+AGG | + | chr5_2:72234146-72234165 | None:intergenic | 45.0% | |
| CCTAGATTCCACCATGACTT+AGG | + | chr5_2:72234152-72234171 | None:intergenic | 45.0% | |
| ! | CCTAAGTCATGGTGGAATCT+AGG | - | chr5_2:72234149-72234168 | Msa0786660:intron | 45.0% |
| TGTTGCTCCGATTGCAAGTA+GGG | - | chr5_2:72234330-72234349 | Msa0786660:intron | 45.0% | |
| GAACAAGCCCTACTTGCAAT+CGG | + | chr5_2:72234340-72234359 | None:intergenic | 45.0% | |
| TTGCGTTATCAGAGTCGTAC+TGG | - | chr5_2:72234781-72234800 | Msa0786660:intron | 45.0% | |
| ! | CGCCGTTTAGAGTAGTATCA+CGG | + | chr5_2:72234831-72234850 | None:intergenic | 45.0% |
| GGAGACAATGTACAACGAGA+TGG | - | chr5_2:72234855-72234874 | Msa0786660:intron | 45.0% | |
| TTTGCACAAATTAGCCGGGA+TGG | + | chr5_2:72234932-72234951 | None:intergenic | 45.0% | |
| ! | TCCCGGCTAATTTGTGCAAA+AGG | - | chr5_2:72234932-72234951 | Msa0786660:intron | 45.0% |
| ! | CCCTTTTGCACAAATTAGCC+GGG | + | chr5_2:72234936-72234955 | None:intergenic | 45.0% |
| ! | CCCGGCTAATTTGTGCAAAA+GGG | - | chr5_2:72234933-72234952 | Msa0786660:intron | 45.0% |
| ! | CACCAGAGGGAACTTGATTT+TGG | + | chr5_2:72234983-72235002 | None:intergenic | 45.0% |
| AGAAGATTAGGCCACCAACT+AGG | - | chr5_2:72235007-72235026 | Msa0786660:intron | 45.0% | |
| !! | GTTTTTAGGCTCCTAGTTGG+TGG | + | chr5_2:72235021-72235040 | None:intergenic | 45.0% |
| ! | CATAAACAGGTTGGGCTTCT+TGG | + | chr5_2:72235055-72235074 | None:intergenic | 45.0% |
| GCTCATTAGCTATGAGCATC+TGG | + | chr5_2:72235388-72235407 | None:intergenic | 45.0% | |
| CTCTTCCAACAACCTGGTAC+TGG | + | chr5_2:72233115-72233134 | None:intergenic | 50.0% | |
| ! | GAAGTGCTCTTCCAACAACC+TGG | + | chr5_2:72233121-72233140 | None:intergenic | 50.0% |
| !! | AAGAGCACTTCCCACCGAAA+AGG | - | chr5_2:72233130-72233149 | Msa0786660:three_prime_UTR | 50.0% |
| ! | GGGATGTTCATCCTTTTCGG+TGG | + | chr5_2:72233144-72233163 | None:intergenic | 50.0% |
| !! | GAAGCTTTGGGCAACCAATG+AGG | - | chr5_2:72233178-72233197 | Msa0786660:three_prime_UTR | 50.0% |
| GGATTTGGCACGAACCTCAT+TGG | + | chr5_2:72233195-72233214 | None:intergenic | 50.0% | |
| GTGGAATCTAGGTGTGTACG+AGG | - | chr5_2:72234160-72234179 | Msa0786660:intron | 50.0% | |
| ! | GTGTTGCTCCGATTGCAAGT+AGG | - | chr5_2:72234329-72234348 | Msa0786660:intron | 50.0% |
| TACTACTCTAAACGGCGCTG+TGG | - | chr5_2:72234834-72234853 | Msa0786660:intron | 50.0% | |
| ACGAGATGGCATCTCGTCAT+AGG | - | chr5_2:72234869-72234888 | Msa0786660:intron | 50.0% | |
| CGAGATGGCATCTCGTCATA+GGG | - | chr5_2:72234870-72234889 | Msa0786660:intron | 50.0% | |
| CATTAAGACTGCCACCATCC+CGG | - | chr5_2:72234915-72234934 | Msa0786660:intron | 50.0% | |
| !! | GTTGGGCTTCTTGGCTTTGT+AGG | + | chr5_2:72235046-72235065 | None:intergenic | 50.0% |
| TGGCATCTCGTCATAGGGTC+AGG | - | chr5_2:72234875-72234894 | Msa0786660:intron | 55.0% | |
| GCACAAATTAGCCGGGATGG+TGG | + | chr5_2:72234929-72234948 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 72232955 | 72235449 | 72232955 | ID=Msa0786660;Name=Msa0786660 |
| chr5_2 | mRNA | 72232955 | 72235449 | 72232955 | ID=Msa0786660-mRNA-1;Parent=Msa0786660;Name=Msa0786660-mRNA-1;_AED=0.01;_eAED=0.01;_QI=42|1|1|1|1|1|4|372|178 |
| chr5_2 | exon | 72232955 | 72233668 | 72232955 | ID=Msa0786660-mRNA-1:exon:21923;Parent=Msa0786660-mRNA-1 |
| chr5_2 | exon | 72235009 | 72235072 | 72235009 | ID=Msa0786660-mRNA-1:exon:21922;Parent=Msa0786660-mRNA-1 |
| chr5_2 | exon | 72235182 | 72235297 | 72235182 | ID=Msa0786660-mRNA-1:exon:21921;Parent=Msa0786660-mRNA-1 |
| chr5_2 | exon | 72235393 | 72235449 | 72235393 | ID=Msa0786660-mRNA-1:exon:21920;Parent=Msa0786660-mRNA-1 |
| chr5_2 | five_prime_UTR | 72235408 | 72235449 | 72235408 | ID=Msa0786660-mRNA-1:five_prime_utr;Parent=Msa0786660-mRNA-1 |
| chr5_2 | CDS | 72235393 | 72235407 | 72235393 | ID=Msa0786660-mRNA-1:cds;Parent=Msa0786660-mRNA-1 |
| chr5_2 | CDS | 72235182 | 72235297 | 72235182 | ID=Msa0786660-mRNA-1:cds;Parent=Msa0786660-mRNA-1 |
| chr5_2 | CDS | 72235009 | 72235072 | 72235009 | ID=Msa0786660-mRNA-1:cds;Parent=Msa0786660-mRNA-1 |
| chr5_2 | CDS | 72233327 | 72233668 | 72233327 | ID=Msa0786660-mRNA-1:cds;Parent=Msa0786660-mRNA-1 |
| chr5_2 | three_prime_UTR | 72232955 | 72233326 | 72232955 | ID=Msa0786660-mRNA-1:three_prime_utr;Parent=Msa0786660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
