Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335840 | XP_013464930.1 | 96.460 | 113 | 4 | 0 | 1 | 113 | 1 | 113 | 3.86e-66 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335840 | sp|O24415|RLA2B_MAIZE | 65.487 | 113 | 39 | 0 | 1 | 113 | 1 | 113 | 8.56e-32 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002750 | Msa0335840 | 0.808694 | 2.731431e-50 | -8.615850e-47 |
| Msa0002790 | Msa0335840 | 0.823471 | 1.360901e-53 | -8.615850e-47 |
| Msa0027590 | Msa0335840 | 0.828331 | 9.540818e-55 | -8.615850e-47 |
| Msa0032780 | Msa0335840 | 0.816871 | 4.422129e-52 | -8.615850e-47 |
| Msa0040220 | Msa0335840 | 0.844751 | 6.228522e-59 | -8.615850e-47 |
| Msa0042480 | Msa0335840 | 0.857899 | 1.191491e-62 | -8.615850e-47 |
| Msa0045730 | Msa0335840 | 0.812991 | 3.208739e-51 | -8.615850e-47 |
| Msa0049690 | Msa0335840 | 0.820929 | 5.289392e-53 | -8.615850e-47 |
| Msa0068970 | Msa0335840 | 0.801687 | 8.005699e-49 | -8.615850e-47 |
| Msa0070840 | Msa0335840 | 0.801494 | 8.767212e-49 | -8.615850e-47 |
| Msa0075350 | Msa0335840 | 0.842894 | 1.956439e-58 | -8.615850e-47 |
| Msa0079590 | Msa0335840 | 0.852005 | 6.130121e-61 | -8.615850e-47 |
| Msa0087910 | Msa0335840 | 0.829792 | 4.221942e-55 | -8.615850e-47 |
| Msa0114570 | Msa0335840 | 0.814758 | 1.308892e-51 | -8.615850e-47 |
| Msa0116130 | Msa0335840 | 0.832870 | 7.385135e-56 | -8.615850e-47 |
| Msa0116670 | Msa0335840 | 0.853861 | 1.805470e-61 | -8.615850e-47 |
| Msa0133540 | Msa0335840 | 0.831078 | 2.046754e-55 | -8.615850e-47 |
| Msa0134580 | Msa0335840 | 0.817118 | 3.892125e-52 | -8.615850e-47 |
| Msa0138890 | Msa0335840 | 0.881505 | 2.269754e-70 | -8.615850e-47 |
| Msa0172930 | Msa0335840 | 0.821409 | 4.100253e-53 | -8.615850e-47 |
| Msa0173530 | Msa0335840 | 0.850421 | 1.717258e-60 | -8.615850e-47 |
| Msa0181490 | Msa0335840 | 0.835475 | 1.642606e-56 | -8.615850e-47 |
| Msa0191450 | Msa0335840 | 0.872655 | 2.691417e-67 | -8.615850e-47 |
| Msa0191550 | Msa0335840 | 0.859962 | 2.876005e-63 | -8.615850e-47 |
| Msa0192750 | Msa0335840 | 0.829669 | 4.524343e-55 | -8.615850e-47 |
| Msa0194940 | Msa0335840 | 0.840703 | 7.413296e-58 | -8.615850e-47 |
| Msa0197980 | Msa0335840 | 0.825062 | 5.751520e-54 | -8.615850e-47 |
| Msa0210330 | Msa0335840 | 0.855339 | 6.741573e-62 | -8.615850e-47 |
| Msa0210360 | Msa0335840 | 0.896420 | 3.754098e-76 | -8.615850e-47 |
| Msa0218830 | Msa0335840 | 0.834580 | 2.760234e-56 | -8.615850e-47 |
| Msa0219120 | Msa0335840 | 0.831252 | 1.855073e-55 | -8.615850e-47 |
| Msa0221030 | Msa0335840 | 0.822718 | 2.039485e-53 | -8.615850e-47 |
| Msa0222730 | Msa0335840 | 0.822633 | 2.133799e-53 | -8.615850e-47 |
| Msa0230490 | Msa0335840 | 0.805086 | 1.581508e-49 | -8.615850e-47 |
| Msa0258850 | Msa0335840 | 0.801435 | 9.015523e-49 | -8.615850e-47 |
| Msa0265250 | Msa0335840 | 0.821179 | 4.634175e-53 | -8.615850e-47 |
| Msa0269180 | Msa0335840 | 0.854971 | 8.625115e-62 | -8.615850e-47 |
| Msa0289610 | Msa0335840 | 0.802997 | 4.301312e-49 | -8.615850e-47 |
| Msa0297830 | Msa0335840 | 0.994588 | 1.693745e-208 | -8.615850e-47 |
| Msa0298200 | Msa0335840 | 0.801109 | 1.051376e-48 | -8.615850e-47 |
| Msa0298870 | Msa0335840 | 0.838059 | 3.600609e-57 | -8.615850e-47 |
| Msa0301220 | Msa0335840 | 0.875205 | 3.700412e-68 | -8.615850e-47 |
| Msa0306690 | Msa0335840 | 0.831099 | 2.022123e-55 | -8.615850e-47 |
| Msa0310080 | Msa0335840 | 0.809098 | 2.238196e-50 | -8.615850e-47 |
| Msa0327300 | Msa0335840 | 0.812258 | 4.641612e-51 | -8.615850e-47 |
| Msa0335840 | Msa0337670 | 0.819524 | 1.110346e-52 | -8.615850e-47 |
| Msa0335840 | Msa0348830 | 0.806021 | 1.006970e-49 | -8.615850e-47 |
| Msa0335840 | Msa0369410 | 0.832496 | 9.145140e-56 | -8.615850e-47 |
| Msa0335840 | Msa0382210 | 0.801835 | 7.466248e-49 | -8.615850e-47 |
| Msa0335840 | Msa0426090 | 0.832326 | 1.007653e-55 | -8.615850e-47 |
| Msa0335840 | Msa0426250 | 0.822954 | 1.796286e-53 | -8.615850e-47 |
| Msa0335840 | Msa0463520 | 0.854511 | 1.172214e-61 | -8.615850e-47 |
| Msa0335840 | Msa0471880 | 0.862807 | 3.900052e-64 | -8.615850e-47 |
| Msa0335840 | Msa0472480 | 0.828112 | 1.077477e-54 | -8.615850e-47 |
| Msa0335840 | Msa0475810 | 0.858972 | 5.704633e-63 | -8.615850e-47 |
| Msa0335840 | Msa0481520 | 0.859035 | 5.462285e-63 | -8.615850e-47 |
| Msa0335840 | Msa0481850 | 0.854864 | 9.264776e-62 | -8.615850e-47 |
| Msa0335840 | Msa0483110 | 0.833767 | 4.414407e-56 | -8.615850e-47 |
| Msa0335840 | Msa0517480 | 0.800614 | 1.326882e-48 | -8.615850e-47 |
| Msa0335840 | Msa0529900 | 0.829840 | 4.110137e-55 | -8.615850e-47 |
| Msa0335840 | Msa0540480 | 0.855081 | 8.015635e-62 | -8.615850e-47 |
| Msa0335840 | Msa0550420 | 0.809937 | 1.478383e-50 | -8.615850e-47 |
| Msa0335840 | Msa0582320 | 0.833995 | 3.871208e-56 | -8.615850e-47 |
| Msa0335840 | Msa0584030 | 0.855083 | 8.002137e-62 | -8.615850e-47 |
| Msa0335840 | Msa0591050 | 0.812690 | 3.734750e-51 | -8.615850e-47 |
| Msa0335840 | Msa0596370 | 0.866780 | 2.220240e-65 | -8.615850e-47 |
| Msa0335840 | Msa0604960 | 0.812226 | 4.715636e-51 | -8.615850e-47 |
| Msa0335840 | Msa0622230 | 0.814065 | 1.862355e-51 | -8.615850e-47 |
| Msa0335840 | Msa0622750 | 0.816715 | 4.793639e-52 | -8.615850e-47 |
| Msa0335840 | Msa0623200 | 0.805008 | 1.642121e-49 | -8.615850e-47 |
| Msa0335840 | Msa0625570 | 0.822961 | 1.790225e-53 | -8.615850e-47 |
| Msa0335840 | Msa0643820 | 0.800154 | 1.646078e-48 | -8.615850e-47 |
| Msa0335840 | Msa0653060 | 0.851166 | 1.059152e-60 | -8.615850e-47 |
| Msa0335840 | Msa0705800 | 0.904014 | 1.908772e-79 | -8.615850e-47 |
| Msa0335840 | Msa0712610 | 0.869203 | 3.692055e-66 | -8.615850e-47 |
| Msa0335840 | Msa0717380 | 0.884860 | 1.335875e-71 | -8.615850e-47 |
| Msa0335840 | Msa0729200 | 0.859738 | 3.360067e-63 | -8.615850e-47 |
| Msa0335840 | Msa0752910 | 0.805193 | 1.501987e-49 | -8.615850e-47 |
| Msa0335840 | Msa0766080 | 0.829151 | 6.043533e-55 | -8.615850e-47 |
| Msa0335840 | Msa0769590 | 0.848679 | 5.256748e-60 | -8.615850e-47 |
| Msa0335840 | Msa0781080 | 0.851225 | 1.019170e-60 | -8.615850e-47 |
| Msa0335840 | Msa0781310 | 0.820772 | 5.749342e-53 | -8.615850e-47 |
| Msa0335840 | Msa0783630 | 0.837559 | 4.839545e-57 | -8.615850e-47 |
| Msa0335840 | Msa0785130 | 0.804366 | 2.236062e-49 | -8.615850e-47 |
| Msa0335840 | Msa0786660 | 0.804191 | 2.431871e-49 | -8.615850e-47 |
| Msa0335840 | Msa0788380 | 0.865446 | 5.871400e-65 | -8.615850e-47 |
| Msa0335840 | Msa0792420 | 0.835705 | 1.436199e-56 | -8.615850e-47 |
| Msa0335840 | Msa0799830 | 0.885344 | 8.816276e-72 | -8.615850e-47 |
| Msa0335840 | Msa0806880 | 0.819642 | 1.043375e-52 | -8.615850e-47 |
| Msa0335840 | Msa0822580 | 0.834664 | 2.630564e-56 | -8.615850e-47 |
| Msa0335840 | Msa0827380 | 0.833041 | 6.695342e-56 | -8.615850e-47 |
| Msa0335840 | Msa0838070 | 0.825811 | 3.824420e-54 | -8.615850e-47 |
| Msa0335840 | Msa0860860 | 0.829675 | 4.508409e-55 | -8.615850e-47 |
| Msa0335840 | Msa0861320 | 0.868600 | 5.790140e-66 | -8.615850e-47 |
| Msa0335840 | Msa0876170 | 0.842390 | 2.662240e-58 | -8.615850e-47 |
| Msa0335840 | Msa0888810 | 0.866276 | 3.209664e-65 | -8.615850e-47 |
| Msa0335840 | Msa0915540 | 0.888054 | 8.290416e-73 | -8.615850e-47 |
| Msa0335840 | Msa0945480 | 0.845413 | 4.124955e-59 | -8.615850e-47 |
| Msa0335840 | Msa1021120 | 0.852829 | 3.571288e-61 | -8.615850e-47 |
| Msa0335840 | Msa1037290 | 0.894211 | 3.053046e-75 | -8.615850e-47 |
| Msa0335840 | Msa1039520 | 0.870397 | 1.505304e-66 | -8.615850e-47 |
| Msa0335840 | Msa1040160 | 0.898779 | 3.797783e-77 | -8.615850e-47 |
| Msa0335840 | Msa1041680 | 0.865641 | 5.095764e-65 | -8.615850e-47 |
| Msa0335840 | Msa1042100 | 0.812250 | 4.659272e-51 | -8.615850e-47 |
| Msa0335840 | Msa1058700 | 0.835179 | 1.951153e-56 | -8.615850e-47 |
| Msa0335840 | Msa1078870 | 0.872629 | 2.746755e-67 | -8.615850e-47 |
| Msa0335840 | Msa1078980 | 0.870431 | 1.467135e-66 | -8.615850e-47 |
| Msa0335840 | Msa1080350 | 0.863941 | 1.737475e-64 | -8.615850e-47 |
| Msa0335840 | Msa1082170 | 0.849661 | 2.801824e-60 | -8.615850e-47 |
| Msa0335840 | Msa1083370 | 0.906206 | 1.901006e-80 | -8.615850e-47 |
| Msa0335840 | Msa1088490 | 0.822167 | 2.737705e-53 | -8.615850e-47 |
| Msa0335840 | Msa1089220 | 0.820633 | 6.186651e-53 | -8.615850e-47 |
| Msa0335840 | Msa1094380 | 0.829874 | 4.032480e-55 | -8.615850e-47 |
| Msa0335840 | Msa1096900 | 0.854931 | 8.860634e-62 | -8.615850e-47 |
| Msa0335840 | Msa1124850 | 0.823040 | 1.715573e-53 | -8.615850e-47 |
| Msa0335840 | Msa1125860 | 0.852385 | 4.778528e-61 | -8.615850e-47 |
| Msa0335840 | Msa1126060 | 0.851407 | 9.057309e-61 | -8.615850e-47 |
| Msa0335840 | Msa1126520 | 0.852553 | 4.281122e-61 | -8.615850e-47 |
| Msa0335840 | Msa1164150 | 0.878311 | 3.111301e-69 | -8.615850e-47 |
| Msa0335840 | Msa1165640 | 0.818371 | 2.029653e-52 | -8.615850e-47 |
| Msa0335840 | Msa1166570 | 0.870290 | 1.631993e-66 | -8.615850e-47 |
| Msa0335840 | Msa1167540 | 0.868061 | 8.639446e-66 | -8.615850e-47 |
| Msa0335840 | Msa1167550 | 0.849922 | 2.369134e-60 | -8.615850e-47 |
| Msa0335840 | Msa1169180 | 0.856329 | 3.463723e-62 | -8.615850e-47 |
| Msa0335840 | Msa1186030 | 0.856979 | 2.230700e-62 | -8.615850e-47 |
| Msa0335840 | Msa1186980 | 0.805754 | 1.145885e-49 | -8.615850e-47 |
| Msa0335840 | Msa1203560 | 0.819880 | 9.204062e-53 | -8.615850e-47 |
| Msa0335840 | Msa1215820 | 0.817491 | 3.208019e-52 | -8.615850e-47 |
| Msa0335840 | Msa1218170 | 0.871087 | 8.925202e-67 | -8.615850e-47 |
| Msa0335840 | Msa1240270 | 0.860651 | 1.780098e-63 | -8.615850e-47 |
| Msa0335840 | Msa1256840 | 0.830274 | 3.220075e-55 | -8.615850e-47 |
| Msa0335840 | Msa1258540 | 0.827776 | 1.298129e-54 | -8.615850e-47 |
| Msa0335840 | Msa1273340 | 0.804274 | 2.336872e-49 | -8.615850e-47 |
| Msa0335840 | Msa1295150 | 0.810361 | 1.197590e-50 | -8.615850e-47 |
| Msa0335840 | Msa1301640 | 0.830749 | 2.464848e-55 | -8.615850e-47 |
| Msa0335840 | Msa1311400 | 0.879363 | 1.324806e-69 | -8.615850e-47 |
| Msa0335840 | Msa1321790 | 0.810922 | 9.060643e-51 | -8.615850e-47 |
| Msa0335840 | Msa1332250 | 0.880069 | 7.431641e-70 | -8.615850e-47 |
| Msa0335840 | Msa1338190 | 0.828185 | 1.034687e-54 | -8.615850e-47 |
| Msa0335840 | Msa1340980 | 0.815209 | 1.039599e-51 | -8.615850e-47 |
| Msa0335840 | Msa1352140 | 0.817707 | 2.867206e-52 | -8.615850e-47 |
| Msa0335840 | Msa1356790 | 0.877878 | 4.412661e-69 | -8.615850e-47 |
| Msa0335840 | Msa1362790 | 0.855366 | 6.618684e-62 | -8.615850e-47 |
| Msa0335840 | Msa1366180 | 0.801332 | 9.465488e-49 | -8.615850e-47 |
| Msa0335840 | Msa1368920 | 0.892944 | 9.948015e-75 | -8.615850e-47 |
| Msa0335840 | Msa1369190 | 0.824187 | 9.244328e-54 | -8.615850e-47 |
| Msa0335840 | Msa1374240 | 0.867686 | 1.139300e-65 | -8.615850e-47 |
| Msa0335840 | Msa1387410 | 0.826316 | 2.900741e-54 | -8.615850e-47 |
| Msa0335840 | Msa1392590 | 0.858568 | 7.534405e-63 | -8.615850e-47 |
| Msa0335840 | Msa1397100 | 0.865365 | 6.224729e-65 | -8.615850e-47 |
| Msa0335840 | Msa1403910 | 0.878763 | 2.157482e-69 | -8.615850e-47 |
| Msa0335840 | Msa1406080 | 0.827390 | 1.606313e-54 | -8.615850e-47 |
| Msa0335840 | Msa1413500 | 0.821294 | 4.357685e-53 | -8.615850e-47 |
| Msa0335840 | Msa1418770 | 0.874121 | 8.648448e-68 | -8.615850e-47 |
| Msa0335840 | Msa1426120 | 0.885537 | 7.467040e-72 | -8.615850e-47 |
| Msa0335840 | Msa1426370 | 0.833478 | 5.210714e-56 | -8.615850e-47 |
| Msa0335840 | Msa1426490 | 0.879428 | 1.255876e-69 | -8.615850e-47 |
| Msa0335840 | Msa1437280 | 0.826117 | 3.234889e-54 | -8.615850e-47 |
| Msa0335840 | Msa1466040 | 0.812993 | 3.204662e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335840 | MtrunA17_Chr2g0321121 | 96.460 | 113 | 4 | 0 | 1 | 113 | 1 | 113 | 3.55e-70 | 205 |
| Msa0335840 | MtrunA17_Chr5g0421491 | 87.611 | 113 | 14 | 0 | 1 | 113 | 1 | 113 | 5.16e-38 | 124 |
| Msa0335840 | MtrunA17_Chr1g0179001 | 73.451 | 113 | 29 | 1 | 1 | 113 | 1 | 112 | 8.39e-30 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0335840 | AT2G27710.4 | 77.143 | 70 | 16 | 0 | 1 | 70 | 1 | 70 | 9.36e-32 | 108 |
| Msa0335840 | AT3G44590.1 | 67.257 | 113 | 35 | 2 | 1 | 113 | 1 | 111 | 8.38e-30 | 103 |
| Msa0335840 | AT3G44590.2 | 67.257 | 113 | 35 | 2 | 1 | 113 | 1 | 111 | 8.38e-30 | 103 |
| Msa0335840 | AT2G27720.1 | 66.087 | 115 | 37 | 1 | 1 | 113 | 1 | 115 | 1.93e-27 | 97.8 |
| Msa0335840 | AT2G27710.1 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.45e-25 | 92.4 |
| Msa0335840 | AT2G27710.2 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.45e-25 | 92.4 |
| Msa0335840 | AT2G27710.3 | 75.385 | 65 | 16 | 0 | 1 | 65 | 1 | 65 | 2.45e-25 | 92.4 |
| Msa0335840 | AT3G28500.1 | 55.652 | 115 | 49 | 2 | 1 | 113 | 1 | 115 | 3.14e-25 | 92.0 |
| Msa0335840 | AT2G27720.3 | 59.843 | 127 | 37 | 2 | 1 | 113 | 1 | 127 | 6.69e-24 | 89.0 |
| Msa0335840 | AT2G27720.2 | 57.692 | 130 | 38 | 2 | 1 | 113 | 1 | 130 | 1.44e-22 | 85.9 |
| Msa0335840 | AT5G40040.1 | 57.895 | 114 | 47 | 1 | 1 | 113 | 1 | 114 | 2.30e-16 | 69.3 |
| Msa0335840 | AT2G27720.4 | 66.667 | 87 | 27 | 1 | 29 | 113 | 5 | 91 | 5.67e-13 | 60.1 |
Find 51 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTACTTGTTGGCCGTTT+TGG | 0.128749 | 2_4:-55047984 | Msa0335840:CDS |
| ATTCAGCTTATTTGATTAAA+AGG | 0.186887 | 2_4:-55046527 | Msa0335840:exon |
| GCTGATCTTAAACAAATTCT+TGG | 0.267351 | 2_4:-55047938 | Msa0335840:CDS |
| GTTGCTGTGTCTGCTGCAAC+TGG | 0.362343 | 2_4:-55046724 | Msa0335840:CDS |
| TCTTCCTTTGCTGCTTCAGC+AGG | 0.364467 | 2_4:+55046679 | None:intergenic |
| CTTAAACAAATTCTTGGATC+AGG | 0.372982 | 2_4:-55047932 | Msa0335840:intron |
| TTTCAATTTAATCTGCGTTA+TGG | 0.375448 | 2_4:-55046389 | Msa0335840:three_prime_UTR |
| GTTATCTTTGTGCAGGATAT+GGG | 0.399106 | 2_4:-55046550 | Msa0335840:intron |
| AGAGAAGAAGGTGGAAGAGA+AGG | 0.434796 | 2_4:-55046659 | Msa0335840:CDS |
| GATTATCGCAGCTTACTTGT+TGG | 0.445399 | 2_4:-55047993 | Msa0335840:CDS |
| GTGTCTGCTGCAACTGGAGG+AGG | 0.445905 | 2_4:-55046718 | Msa0335840:CDS |
| TGCGCCTGCTGAAGCAGCAA+AGG | 0.454235 | 2_4:-55046683 | Msa0335840:CDS |
| CCAAGTTGATATTTATTGAC+TGG | 0.461135 | 2_4:-55046198 | Msa0335840:three_prime_UTR |
| AGCGGCTTGCAACATCCCTC+TGG | 0.466342 | 2_4:-55048166 | Msa0335840:five_prime_UTR |
| GATCAGCAGCTGAAGGGGAT+TGG | 0.469713 | 2_4:+55047954 | None:intergenic |
| GATATCTTACTTGATGGAAA+TGG | 0.483487 | 2_4:+55048110 | None:intergenic |
| CCTTGCCCTTGACTTCACTT+AGG | 0.488662 | 2_4:+55046812 | None:intergenic |
| TGCCAGTGGAAGAGAAAAGT+TGG | 0.491656 | 2_4:-55046773 | Msa0335840:CDS |
| TTGACTGGTACACCAGATGT+AGG | 0.496222 | 2_4:-55046183 | Msa0335840:three_prime_UTR |
| CACAGCAACAGCACCACCAC+CGG | 0.500128 | 2_4:+55046738 | None:intergenic |
| AGCAGCAAAGGAAGAGAAGA+AGG | 0.518126 | 2_4:-55046671 | Msa0335840:CDS |
| GCTTCAGTTCCATCCGGTGG+TGG | 0.522209 | 2_4:-55046751 | Msa0335840:CDS |
| CCAGTCAATAAATATCAACT+TGG | 0.526486 | 2_4:+55046198 | None:intergenic |
| GGATTGGTTGCCTCCCAAAA+CGG | 0.534645 | 2_4:+55047970 | None:intergenic |
| CAACTCAATGTTGCCATCCT+CGG | 0.536919 | 2_4:+55046837 | None:intergenic |
| GCAACAGCACCACCACCGGA+TGG | 0.539099 | 2_4:+55046742 | None:intergenic |
| TGTTTAAGATCAGCAGCTGA+AGG | 0.541739 | 2_4:+55047947 | None:intergenic |
| GACGGTAGGGTTTCACCAGA+GGG | 0.546412 | 2_4:+55048151 | None:intergenic |
| TCTTCCACTGGCAATAAGCT+CGG | 0.547245 | 2_4:+55046783 | None:intergenic |
| GTTTAAGATCAGCAGCTGAA+GGG | 0.564265 | 2_4:+55047948 | None:intergenic |
| TTTAAGATCAGCAGCTGAAG+GGG | 0.564880 | 2_4:+55047949 | None:intergenic |
| AAGTTGGCTTCAGTTCCATC+CGG | 0.567453 | 2_4:-55046757 | Msa0335840:CDS |
| ATCTTACTTGATGGAAATGG+CGG | 0.571234 | 2_4:+55048113 | None:intergenic |
| GTTGGAGTTGAGGCCGAGGA+TGG | 0.573673 | 2_4:-55046850 | Msa0335840:CDS |
| TGACTGGTACACCAGATGTA+GGG | 0.583188 | 2_4:-55046182 | None:intergenic |
| GTTGCTCCTAAGTGAAGTCA+AGG | 0.590863 | 2_4:-55046818 | Msa0335840:CDS |
| GCTGTGTCTGCTGCAACTGG+AGG | 0.592795 | 2_4:-55046721 | Msa0335840:CDS |
| ATTGTCTTAATATTATTGCA+TGG | 0.594069 | 2_4:-55046224 | Msa0335840:three_prime_UTR |
| TATGATTGTAGTTGGAGTTG+AGG | 0.599920 | 2_4:-55046860 | Msa0335840:intron |
| TGAGATCTCGACTAGACGGT+AGG | 0.603306 | 2_4:+55048137 | None:intergenic |
| GAGATCTCGACTAGACGGTA+GGG | 0.605794 | 2_4:+55048138 | None:intergenic |
| CATGAATCTACCACTAGAGG+AGG | 0.606127 | 2_4:+55046308 | None:intergenic |
| TTTGCCGAGCTTATTGCCAG+TGG | 0.606365 | 2_4:-55046787 | Msa0335840:CDS |
| TTGGCTTCAGTTCCATCCGG+TGG | 0.607108 | 2_4:-55046754 | Msa0335840:CDS |
| ATTCATGAATCTACCACTAG+AGG | 0.610067 | 2_4:+55046305 | None:intergenic |
| CCTAAGTGAAGTCAAGGGCA+AGG | 0.616488 | 2_4:-55046812 | Msa0335840:CDS |
| TGTAGTTGGAGTTGAGGCCG+AGG | 0.617745 | 2_4:-55046854 | Msa0335840:intron |
| AGACGGTAGGGTTTCACCAG+AGG | 0.630670 | 2_4:+55048150 | None:intergenic |
| CGGATGAGATCTCGACTAGA+CGG | 0.639961 | 2_4:+55048133 | None:intergenic |
| TTGCTCCTAAGTGAAGTCAA+GGG | 0.680870 | 2_4:-55046817 | Msa0335840:CDS |
| AGCAAAGGAAGAGAAGAAGG+TGG | 0.683753 | 2_4:-55046668 | Msa0335840:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGATTAAAGATTAAATT+GGG | + | chr2_4:55046453-55046472 | None:intergenic | 10.0% |
| !! | AATAAGATTAAAGATTAAAT+TGG | + | chr2_4:55046454-55046473 | None:intergenic | 10.0% |
| !!! | AAATAATTTTAATTCAAGTT+TGG | - | chr2_4:55046858-55046877 | Msa0335840:intron | 10.0% |
| !!! | AATAATTTTAATTCAAGTTT+GGG | - | chr2_4:55046859-55046878 | Msa0335840:intron | 10.0% |
| !! | ATAAGATTAAAGATTAAATT+GGG | + | chr2_4:55046453-55046472 | None:intergenic | 10.0% |
| !! | AATAAGATTAAAGATTAAAT+TGG | + | chr2_4:55046454-55046473 | None:intergenic | 10.0% |
| !!! | AAATAATTTTAATTCAAGTT+TGG | - | chr2_4:55046858-55046877 | Msa0335840:intron | 10.0% |
| !!! | AATAATTTTAATTCAAGTTT+GGG | - | chr2_4:55046859-55046878 | Msa0335840:intron | 10.0% |
| !!! | TTTAACTTTAATTCAAGTTT+GGG | - | chr2_4:55046892-55046911 | Msa0335840:intron | 15.0% |
| !! | ATGAAAATTGATCAAAATAT+TGG | - | chr2_4:55046940-55046959 | Msa0335840:intron | 15.0% |
| !! | TTAAAATCAAACCAATATAT+GGG | + | chr2_4:55047214-55047233 | None:intergenic | 15.0% |
| !! | ATTAAAATCAAACCAATATA+TGG | + | chr2_4:55047215-55047234 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGACTTTATTTT+TGG | - | chr2_4:55047462-55047481 | Msa0335840:intron | 15.0% |
| !!! | AAAAAAGTGACTTTATTTTT+GGG | - | chr2_4:55047463-55047482 | Msa0335840:intron | 15.0% |
| !!! | TTTAACTTTAATTCAAGTTT+GGG | - | chr2_4:55046892-55046911 | Msa0335840:intron | 15.0% |
| !! | ATGAAAATTGATCAAAATAT+TGG | - | chr2_4:55046940-55046959 | Msa0335840:intron | 15.0% |
| !! | TTAAAATCAAACCAATATAT+GGG | + | chr2_4:55047214-55047233 | None:intergenic | 15.0% |
| !! | ATTAAAATCAAACCAATATA+TGG | + | chr2_4:55047215-55047234 | None:intergenic | 15.0% |
| !!! | AAAAAAAGTGACTTTATTTT+TGG | - | chr2_4:55047462-55047481 | Msa0335840:intron | 15.0% |
| !!! | AAAAAAGTGACTTTATTTTT+GGG | - | chr2_4:55047463-55047482 | Msa0335840:intron | 15.0% |
| !! | ATGGATCTACTAAAATAATT+CGG | + | chr2_4:55046549-55046568 | None:intergenic | 20.0% |
| !!! | ATATTCTACACTTTTACTTA+TGG | + | chr2_4:55046568-55046587 | None:intergenic | 20.0% |
| !!! | TGCTAATTTAATTCAAGTTT+AGG | - | chr2_4:55046695-55046714 | Msa0335840:CDS | 20.0% |
| !!! | TTTAATTCAAGTTTAGGATT+TGG | - | chr2_4:55046701-55046720 | Msa0335840:CDS | 20.0% |
| !!! | GGATTTGGTTAATTTATAAT+CGG | - | chr2_4:55046716-55046735 | Msa0335840:CDS | 20.0% |
| !!! | GTTTAACTTTAATTCAAGTT+TGG | - | chr2_4:55046891-55046910 | Msa0335840:intron | 20.0% |
| !!! | GATCAAAATATTGGTTTATT+TGG | - | chr2_4:55046949-55046968 | Msa0335840:intron | 20.0% |
| !!! | AAATATTGGTTTATTTGGAT+TGG | - | chr2_4:55046954-55046973 | Msa0335840:intron | 20.0% |
| !! | AATAGTTTATGCAAATTCAT+AGG | - | chr2_4:55047128-55047147 | Msa0335840:intron | 20.0% |
| !! | TAAAATCAAACCAATATATG+GGG | + | chr2_4:55047213-55047232 | None:intergenic | 20.0% |
| !!! | GTATATTTTTTTACTGTTGA+AGG | - | chr2_4:55047350-55047369 | Msa0335840:intron | 20.0% |
| !!! | AATTTTGAAACTTACATCAT+CGG | + | chr2_4:55047721-55047740 | None:intergenic | 20.0% |
| !! | ATTCAGCTTATTTGATTAAA+AGG | - | chr2_4:55047821-55047840 | Msa0335840:intron | 20.0% |
| !! | ATTGTCTTAATATTATTGCA+TGG | - | chr2_4:55048124-55048143 | Msa0335840:five_prime_UTR | 20.0% |
| !! | ATGGATCTACTAAAATAATT+CGG | + | chr2_4:55046549-55046568 | None:intergenic | 20.0% |
| !!! | ATATTCTACACTTTTACTTA+TGG | + | chr2_4:55046568-55046587 | None:intergenic | 20.0% |
| !!! | TGCTAATTTAATTCAAGTTT+AGG | - | chr2_4:55046695-55046714 | Msa0335840:CDS | 20.0% |
| !!! | TTTAATTCAAGTTTAGGATT+TGG | - | chr2_4:55046701-55046720 | Msa0335840:CDS | 20.0% |
| !!! | GGATTTGGTTAATTTATAAT+CGG | - | chr2_4:55046716-55046735 | Msa0335840:CDS | 20.0% |
| !!! | GTTTAACTTTAATTCAAGTT+TGG | - | chr2_4:55046891-55046910 | Msa0335840:intron | 20.0% |
| !!! | GATCAAAATATTGGTTTATT+TGG | - | chr2_4:55046949-55046968 | Msa0335840:intron | 20.0% |
| !!! | AAATATTGGTTTATTTGGAT+TGG | - | chr2_4:55046954-55046973 | Msa0335840:intron | 20.0% |
| !! | AATAGTTTATGCAAATTCAT+AGG | - | chr2_4:55047128-55047147 | Msa0335840:intron | 20.0% |
| !! | TAAAATCAAACCAATATATG+GGG | + | chr2_4:55047213-55047232 | None:intergenic | 20.0% |
| !!! | GTATATTTTTTTACTGTTGA+AGG | - | chr2_4:55047350-55047369 | Msa0335840:intron | 20.0% |
| !!! | AATTTTGAAACTTACATCAT+CGG | + | chr2_4:55047721-55047740 | None:intergenic | 20.0% |
| !! | ATTCAGCTTATTTGATTAAA+AGG | - | chr2_4:55047821-55047840 | Msa0335840:intron | 20.0% |
| !! | ATTGTCTTAATATTATTGCA+TGG | - | chr2_4:55048124-55048143 | Msa0335840:five_prime_UTR | 20.0% |
| ! | CAAACATTAAACAAAAACGA+TGG | + | chr2_4:55046322-55046341 | None:intergenic | 25.0% |
| !!! | GCATTTTTTGTTTGTTTTTC+CGG | - | chr2_4:55046507-55046526 | Msa0335840:three_prime_UTR | 25.0% |
| !!! | ATTTTAATTCAAGTTTGGGT+TGG | - | chr2_4:55046863-55046882 | Msa0335840:intron | 25.0% |
| !!! | TTTTAATTCAAGTTTGGGTT+GGG | - | chr2_4:55046864-55046883 | Msa0335840:intron | 25.0% |
| !!! | GCTTAGTTTTATACATTGTT+TGG | - | chr2_4:55047235-55047254 | Msa0335840:intron | 25.0% |
| !! | TTTTACTGTTGAAGGAAAAA+TGG | - | chr2_4:55047358-55047377 | Msa0335840:intron | 25.0% |
| !! | TAGTAGTATTGTTTGTTACT+TGG | - | chr2_4:55047743-55047762 | Msa0335840:intron | 25.0% |
| ! | TTTCAATTTAATCTGCGTTA+TGG | - | chr2_4:55047959-55047978 | Msa0335840:CDS | 25.0% |
| ! | CAAACATTAAACAAAAACGA+TGG | + | chr2_4:55046322-55046341 | None:intergenic | 25.0% |
| !!! | GCATTTTTTGTTTGTTTTTC+CGG | - | chr2_4:55046507-55046526 | Msa0335840:three_prime_UTR | 25.0% |
| !!! | ATTTTAATTCAAGTTTGGGT+TGG | - | chr2_4:55046863-55046882 | Msa0335840:intron | 25.0% |
| !!! | TTTTAATTCAAGTTTGGGTT+GGG | - | chr2_4:55046864-55046883 | Msa0335840:intron | 25.0% |
| !!! | GCTTAGTTTTATACATTGTT+TGG | - | chr2_4:55047235-55047254 | Msa0335840:intron | 25.0% |
| !! | TTTTACTGTTGAAGGAAAAA+TGG | - | chr2_4:55047358-55047377 | Msa0335840:intron | 25.0% |
| !! | TAGTAGTATTGTTTGTTACT+TGG | - | chr2_4:55047743-55047762 | Msa0335840:intron | 25.0% |
| ! | TTTCAATTTAATCTGCGTTA+TGG | - | chr2_4:55047959-55047978 | Msa0335840:CDS | 25.0% |
| GATATCTTACTTGATGGAAA+TGG | + | chr2_4:55046241-55046260 | None:intergenic | 30.0% | |
| GAAATCGATATCTTACTTGA+TGG | + | chr2_4:55046247-55046266 | None:intergenic | 30.0% | |
| ! | AAACTTCACTCTTTTACGTT+TGG | - | chr2_4:55046275-55046294 | Msa0335840:three_prime_UTR | 30.0% |
| ! | AACTTCACTCTTTTACGTTT+GGG | - | chr2_4:55046276-55046295 | Msa0335840:three_prime_UTR | 30.0% |
| GCTGATCTTAAACAAATTCT+TGG | - | chr2_4:55046410-55046429 | Msa0335840:three_prime_UTR | 30.0% | |
| CTTAAACAAATTCTTGGATC+AGG | - | chr2_4:55046416-55046435 | Msa0335840:three_prime_UTR | 30.0% | |
| AAATAATCAATCCTAGACTG+TGG | - | chr2_4:55046650-55046669 | Msa0335840:CDS | 30.0% | |
| AATAATCAATCCTAGACTGT+GGG | - | chr2_4:55046651-55046670 | Msa0335840:CDS | 30.0% | |
| TATCTACTGTTAGACTGTTA+AGG | - | chr2_4:55046990-55047009 | Msa0335840:intron | 30.0% | |
| CCAGTCAATAAATATCAACT+TGG | + | chr2_4:55048153-55048172 | None:intergenic | 30.0% | |
| !! | CCAAGTTGATATTTATTGAC+TGG | - | chr2_4:55048150-55048169 | Msa0335840:five_prime_UTR | 30.0% |
| GATATCTTACTTGATGGAAA+TGG | + | chr2_4:55046241-55046260 | None:intergenic | 30.0% | |
| GAAATCGATATCTTACTTGA+TGG | + | chr2_4:55046247-55046266 | None:intergenic | 30.0% | |
| ! | AAACTTCACTCTTTTACGTT+TGG | - | chr2_4:55046275-55046294 | Msa0335840:three_prime_UTR | 30.0% |
| ! | AACTTCACTCTTTTACGTTT+GGG | - | chr2_4:55046276-55046295 | Msa0335840:three_prime_UTR | 30.0% |
| GCTGATCTTAAACAAATTCT+TGG | - | chr2_4:55046410-55046429 | Msa0335840:three_prime_UTR | 30.0% | |
| CTTAAACAAATTCTTGGATC+AGG | - | chr2_4:55046416-55046435 | Msa0335840:three_prime_UTR | 30.0% | |
| AAATAATCAATCCTAGACTG+TGG | - | chr2_4:55046650-55046669 | Msa0335840:CDS | 30.0% | |
| AATAATCAATCCTAGACTGT+GGG | - | chr2_4:55046651-55046670 | Msa0335840:CDS | 30.0% | |
| TATCTACTGTTAGACTGTTA+AGG | - | chr2_4:55046990-55047009 | Msa0335840:intron | 30.0% | |
| CCAGTCAATAAATATCAACT+TGG | + | chr2_4:55048153-55048172 | None:intergenic | 30.0% | |
| !! | CCAAGTTGATATTTATTGAC+TGG | - | chr2_4:55048150-55048169 | Msa0335840:five_prime_UTR | 30.0% |
| ATCTTACTTGATGGAAATGG+CGG | + | chr2_4:55046238-55046257 | None:intergenic | 35.0% | |
| TGAATGAACATGTGTCTGTT+TGG | - | chr2_4:55046754-55046773 | Msa0335840:CDS | 35.0% | |
| TTATCTACTGTTGGACAGTT+TGG | - | chr2_4:55046794-55046813 | Msa0335840:CDS | 35.0% | |
| TATCTACTGTTGGACAGTTT+GGG | - | chr2_4:55046795-55046814 | Msa0335840:CDS | 35.0% | |
| AATCAAACAGCCCCATATAT+TGG | - | chr2_4:55047200-55047219 | Msa0335840:intron | 35.0% | |
| TTTGGGTCTATGATTGTAGT+TGG | - | chr2_4:55047480-55047499 | Msa0335840:intron | 35.0% | |
| TATGATTGTAGTTGGAGTTG+AGG | - | chr2_4:55047488-55047507 | Msa0335840:intron | 35.0% | |
| TGTTATCTTTGTGCAGGATA+TGG | - | chr2_4:55047797-55047816 | Msa0335840:intron | 35.0% | |
| GTTATCTTTGTGCAGGATAT+GGG | - | chr2_4:55047798-55047817 | Msa0335840:intron | 35.0% | |
| ATTCATGAATCTACCACTAG+AGG | + | chr2_4:55048046-55048065 | None:intergenic | 35.0% | |
| ATCTTACTTGATGGAAATGG+CGG | + | chr2_4:55046238-55046257 | None:intergenic | 35.0% | |
| TGAATGAACATGTGTCTGTT+TGG | - | chr2_4:55046754-55046773 | Msa0335840:CDS | 35.0% | |
| TTATCTACTGTTGGACAGTT+TGG | - | chr2_4:55046794-55046813 | Msa0335840:CDS | 35.0% | |
| TATCTACTGTTGGACAGTTT+GGG | - | chr2_4:55046795-55046814 | Msa0335840:CDS | 35.0% | |
| AATCAAACAGCCCCATATAT+TGG | - | chr2_4:55047200-55047219 | Msa0335840:intron | 35.0% | |
| TTTGGGTCTATGATTGTAGT+TGG | - | chr2_4:55047480-55047499 | Msa0335840:intron | 35.0% | |
| TATGATTGTAGTTGGAGTTG+AGG | - | chr2_4:55047488-55047507 | Msa0335840:intron | 35.0% | |
| TGTTATCTTTGTGCAGGATA+TGG | - | chr2_4:55047797-55047816 | Msa0335840:intron | 35.0% | |
| GTTATCTTTGTGCAGGATAT+GGG | - | chr2_4:55047798-55047817 | Msa0335840:intron | 35.0% | |
| ATTCATGAATCTACCACTAG+AGG | + | chr2_4:55048046-55048065 | None:intergenic | 35.0% | |
| GATTATCGCAGCTTACTTGT+TGG | - | chr2_4:55046355-55046374 | Msa0335840:three_prime_UTR | 40.0% | |
| ! | TTTAAGATCAGCAGCTGAAG+GGG | + | chr2_4:55046402-55046421 | None:intergenic | 40.0% |
| ! | GTTTAAGATCAGCAGCTGAA+GGG | + | chr2_4:55046403-55046422 | None:intergenic | 40.0% |
| ! | TGTTTAAGATCAGCAGCTGA+AGG | + | chr2_4:55046404-55046423 | None:intergenic | 40.0% |
| CGGATACTAATCATCGAAAC+CGG | + | chr2_4:55046529-55046548 | None:intergenic | 40.0% | |
| CTTCATTATACCCACAGTCT+AGG | + | chr2_4:55046664-55046683 | None:intergenic | 40.0% | |
| GAACATGTGTCTGTTTGGAT+TGG | - | chr2_4:55046759-55046778 | Msa0335840:CDS | 40.0% | |
| CGTTTGAGCTTATCTACTGT+TGG | - | chr2_4:55046785-55046804 | Msa0335840:CDS | 40.0% | |
| TTGCTCCTAAGTGAAGTCAA+GGG | - | chr2_4:55047531-55047550 | Msa0335840:intron | 40.0% | |
| GCGTAATGTTATCTTTGTGC+AGG | - | chr2_4:55047791-55047810 | Msa0335840:intron | 40.0% | |
| GATTATCGCAGCTTACTTGT+TGG | - | chr2_4:55046355-55046374 | Msa0335840:three_prime_UTR | 40.0% | |
| ! | TTTAAGATCAGCAGCTGAAG+GGG | + | chr2_4:55046402-55046421 | None:intergenic | 40.0% |
| ! | GTTTAAGATCAGCAGCTGAA+GGG | + | chr2_4:55046403-55046422 | None:intergenic | 40.0% |
| ! | TGTTTAAGATCAGCAGCTGA+AGG | + | chr2_4:55046404-55046423 | None:intergenic | 40.0% |
| CGGATACTAATCATCGAAAC+CGG | + | chr2_4:55046529-55046548 | None:intergenic | 40.0% | |
| CTTCATTATACCCACAGTCT+AGG | + | chr2_4:55046664-55046683 | None:intergenic | 40.0% | |
| GAACATGTGTCTGTTTGGAT+TGG | - | chr2_4:55046759-55046778 | Msa0335840:CDS | 40.0% | |
| CGTTTGAGCTTATCTACTGT+TGG | - | chr2_4:55046785-55046804 | Msa0335840:CDS | 40.0% | |
| TTGCTCCTAAGTGAAGTCAA+GGG | - | chr2_4:55047531-55047550 | Msa0335840:intron | 40.0% | |
| GCGTAATGTTATCTTTGTGC+AGG | - | chr2_4:55047791-55047810 | Msa0335840:intron | 40.0% | |
| !! | AGCTTACTTGTTGGCCGTTT+TGG | - | chr2_4:55046364-55046383 | Msa0335840:three_prime_UTR | 45.0% |
| !! | GCTTACTTGTTGGCCGTTTT+GGG | - | chr2_4:55046365-55046384 | Msa0335840:three_prime_UTR | 45.0% |
| CAACTCAATGTTGCCATCCT+CGG | + | chr2_4:55047514-55047533 | None:intergenic | 45.0% | |
| GTTGCTCCTAAGTGAAGTCA+AGG | - | chr2_4:55047530-55047549 | Msa0335840:intron | 45.0% | |
| TCTTCCACTGGCAATAAGCT+CGG | + | chr2_4:55047568-55047587 | None:intergenic | 45.0% | |
| TGCCAGTGGAAGAGAAAAGT+TGG | - | chr2_4:55047575-55047594 | Msa0335840:intron | 45.0% | |
| ! | AGCCAACTTTTCTCTTCCAC+TGG | + | chr2_4:55047580-55047599 | None:intergenic | 45.0% |
| ! | AAGTTGGCTTCAGTTCCATC+CGG | - | chr2_4:55047591-55047610 | Msa0335840:intron | 45.0% |
| AGCAGCAAAGGAAGAGAAGA+AGG | - | chr2_4:55047677-55047696 | Msa0335840:intron | 45.0% | |
| AGCAAAGGAAGAGAAGAAGG+TGG | - | chr2_4:55047680-55047699 | Msa0335840:intron | 45.0% | |
| AGAGAAGAAGGTGGAAGAGA+AGG | - | chr2_4:55047689-55047708 | Msa0335840:intron | 45.0% | |
| ! | TCTCTCTTTTCCTCCTCTAG+TGG | - | chr2_4:55048030-55048049 | Msa0335840:intron | 45.0% |
| CATGAATCTACCACTAGAGG+AGG | + | chr2_4:55048043-55048062 | None:intergenic | 45.0% | |
| TTGACTGGTACACCAGATGT+AGG | - | chr2_4:55048165-55048184 | Msa0335840:five_prime_UTR | 45.0% | |
| TGACTGGTACACCAGATGTA+GGG | - | chr2_4:55048166-55048185 | Msa0335840:five_prime_UTR | 45.0% | |
| !! | AGCTTACTTGTTGGCCGTTT+TGG | - | chr2_4:55046364-55046383 | Msa0335840:three_prime_UTR | 45.0% |
| !! | GCTTACTTGTTGGCCGTTTT+GGG | - | chr2_4:55046365-55046384 | Msa0335840:three_prime_UTR | 45.0% |
| CAACTCAATGTTGCCATCCT+CGG | + | chr2_4:55047514-55047533 | None:intergenic | 45.0% | |
| GTTGCTCCTAAGTGAAGTCA+AGG | - | chr2_4:55047530-55047549 | Msa0335840:intron | 45.0% | |
| TCTTCCACTGGCAATAAGCT+CGG | + | chr2_4:55047568-55047587 | None:intergenic | 45.0% | |
| TGCCAGTGGAAGAGAAAAGT+TGG | - | chr2_4:55047575-55047594 | Msa0335840:intron | 45.0% | |
| ! | AGCCAACTTTTCTCTTCCAC+TGG | + | chr2_4:55047580-55047599 | None:intergenic | 45.0% |
| ! | AAGTTGGCTTCAGTTCCATC+CGG | - | chr2_4:55047591-55047610 | Msa0335840:intron | 45.0% |
| AGCAGCAAAGGAAGAGAAGA+AGG | - | chr2_4:55047677-55047696 | Msa0335840:intron | 45.0% | |
| AGCAAAGGAAGAGAAGAAGG+TGG | - | chr2_4:55047680-55047699 | Msa0335840:intron | 45.0% | |
| AGAGAAGAAGGTGGAAGAGA+AGG | - | chr2_4:55047689-55047708 | Msa0335840:intron | 45.0% | |
| ! | TCTCTCTTTTCCTCCTCTAG+TGG | - | chr2_4:55048030-55048049 | Msa0335840:intron | 45.0% |
| CATGAATCTACCACTAGAGG+AGG | + | chr2_4:55048043-55048062 | None:intergenic | 45.0% | |
| GAGATCTCGACTAGACGGTA+GGG | + | chr2_4:55046213-55046232 | None:intergenic | 50.0% | |
| TGAGATCTCGACTAGACGGT+AGG | + | chr2_4:55046214-55046233 | None:intergenic | 50.0% | |
| CGGATGAGATCTCGACTAGA+CGG | + | chr2_4:55046218-55046237 | None:intergenic | 50.0% | |
| !! | TACTTGTTGGCCGTTTTGGG+AGG | - | chr2_4:55046368-55046387 | Msa0335840:three_prime_UTR | 50.0% |
| !! | GGATTGGTTGCCTCCCAAAA+CGG | + | chr2_4:55046381-55046400 | None:intergenic | 50.0% |
| CCTTGCCCTTGACTTCACTT+AGG | + | chr2_4:55047539-55047558 | None:intergenic | 50.0% | |
| CCTAAGTGAAGTCAAGGGCA+AGG | - | chr2_4:55047536-55047555 | Msa0335840:intron | 50.0% | |
| TTTGCCGAGCTTATTGCCAG+TGG | - | chr2_4:55047561-55047580 | Msa0335840:intron | 50.0% | |
| ! | TCTTCCTTTGCTGCTTCAGC+AGG | + | chr2_4:55047672-55047691 | None:intergenic | 50.0% |
| GAGATCTCGACTAGACGGTA+GGG | + | chr2_4:55046213-55046232 | None:intergenic | 50.0% | |
| TGAGATCTCGACTAGACGGT+AGG | + | chr2_4:55046214-55046233 | None:intergenic | 50.0% | |
| CGGATGAGATCTCGACTAGA+CGG | + | chr2_4:55046218-55046237 | None:intergenic | 50.0% | |
| !! | TACTTGTTGGCCGTTTTGGG+AGG | - | chr2_4:55046368-55046387 | Msa0335840:three_prime_UTR | 50.0% |
| !! | GGATTGGTTGCCTCCCAAAA+CGG | + | chr2_4:55046381-55046400 | None:intergenic | 50.0% |
| CCTTGCCCTTGACTTCACTT+AGG | + | chr2_4:55047539-55047558 | None:intergenic | 50.0% | |
| CCTAAGTGAAGTCAAGGGCA+AGG | - | chr2_4:55047536-55047555 | Msa0335840:intron | 50.0% | |
| TTTGCCGAGCTTATTGCCAG+TGG | - | chr2_4:55047561-55047580 | Msa0335840:intron | 50.0% | |
| ! | TCTTCCTTTGCTGCTTCAGC+AGG | + | chr2_4:55047672-55047691 | None:intergenic | 50.0% |
| GACGGTAGGGTTTCACCAGA+GGG | + | chr2_4:55046200-55046219 | None:intergenic | 55.0% | |
| AGACGGTAGGGTTTCACCAG+AGG | + | chr2_4:55046201-55046220 | None:intergenic | 55.0% | |
| GATCAGCAGCTGAAGGGGAT+TGG | + | chr2_4:55046397-55046416 | None:intergenic | 55.0% | |
| TGTAGTTGGAGTTGAGGCCG+AGG | - | chr2_4:55047494-55047513 | Msa0335840:intron | 55.0% | |
| TTGGCTTCAGTTCCATCCGG+TGG | - | chr2_4:55047594-55047613 | Msa0335840:intron | 55.0% | |
| GTTGCTGTGTCTGCTGCAAC+TGG | - | chr2_4:55047624-55047643 | Msa0335840:intron | 55.0% | |
| GACGGTAGGGTTTCACCAGA+GGG | + | chr2_4:55046200-55046219 | None:intergenic | 55.0% | |
| AGACGGTAGGGTTTCACCAG+AGG | + | chr2_4:55046201-55046220 | None:intergenic | 55.0% | |
| GATCAGCAGCTGAAGGGGAT+TGG | + | chr2_4:55046397-55046416 | None:intergenic | 55.0% | |
| TGTAGTTGGAGTTGAGGCCG+AGG | - | chr2_4:55047494-55047513 | Msa0335840:intron | 55.0% | |
| TTGGCTTCAGTTCCATCCGG+TGG | - | chr2_4:55047594-55047613 | Msa0335840:intron | 55.0% | |
| GTTGCTGTGTCTGCTGCAAC+TGG | - | chr2_4:55047624-55047643 | Msa0335840:intron | 55.0% | |
| GTTGGAGTTGAGGCCGAGGA+TGG | - | chr2_4:55047498-55047517 | Msa0335840:intron | 60.0% | |
| GCTTCAGTTCCATCCGGTGG+TGG | - | chr2_4:55047597-55047616 | Msa0335840:intron | 60.0% | |
| CACAGCAACAGCACCACCAC+CGG | + | chr2_4:55047613-55047632 | None:intergenic | 60.0% | |
| GCTGTGTCTGCTGCAACTGG+AGG | - | chr2_4:55047627-55047646 | Msa0335840:intron | 60.0% | |
| GTGTCTGCTGCAACTGGAGG+AGG | - | chr2_4:55047630-55047649 | Msa0335840:intron | 60.0% | |
| TGCGCCTGCTGAAGCAGCAA+AGG | - | chr2_4:55047665-55047684 | Msa0335840:intron | 60.0% | |
| GTTGGAGTTGAGGCCGAGGA+TGG | - | chr2_4:55047498-55047517 | Msa0335840:intron | 60.0% | |
| GCTTCAGTTCCATCCGGTGG+TGG | - | chr2_4:55047597-55047616 | Msa0335840:intron | 60.0% | |
| CACAGCAACAGCACCACCAC+CGG | + | chr2_4:55047613-55047632 | None:intergenic | 60.0% | |
| GCTGTGTCTGCTGCAACTGG+AGG | - | chr2_4:55047627-55047646 | Msa0335840:intron | 60.0% | |
| GTGTCTGCTGCAACTGGAGG+AGG | - | chr2_4:55047630-55047649 | Msa0335840:intron | 60.0% | |
| TGCGCCTGCTGAAGCAGCAA+AGG | - | chr2_4:55047665-55047684 | Msa0335840:intron | 60.0% | |
| GCAACAGCACCACCACCGGA+TGG | + | chr2_4:55047609-55047628 | None:intergenic | 65.0% | |
| GCAACAGCACCACCACCGGA+TGG | + | chr2_4:55047609-55047628 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55046183 | 55048187 | 55046183 | ID=Msa0335840;Name=Msa0335840 |
| chr2_4 | mRNA | 55046183 | 55048187 | 55046183 | ID=Msa0335840-mRNA-1;Parent=Msa0335840;Name=Msa0335840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=70|1|1|1|0.66|0.5|4|348|113 |
| chr2_4 | exon | 55046183 | 55046557 | 55046183 | ID=Msa0335840-mRNA-1:exon:16689;Parent=Msa0335840-mRNA-1 |
| chr2_4 | exon | 55046645 | 55046871 | 55046645 | ID=Msa0335840-mRNA-1:exon:16688;Parent=Msa0335840-mRNA-1 |
| chr2_4 | exon | 55047933 | 55048022 | 55047933 | ID=Msa0335840-mRNA-1:exon:16687;Parent=Msa0335840-mRNA-1 |
| chr2_4 | exon | 55048120 | 55048187 | 55048120 | ID=Msa0335840-mRNA-1:exon:16686;Parent=Msa0335840-mRNA-1 |
| chr2_4 | five_prime_UTR | 55048120 | 55048187 | 55048120 | ID=Msa0335840-mRNA-1:five_prime_utr;Parent=Msa0335840-mRNA-1 |
| chr2_4 | five_prime_UTR | 55048021 | 55048022 | 55048021 | ID=Msa0335840-mRNA-1:five_prime_utr;Parent=Msa0335840-mRNA-1 |
| chr2_4 | CDS | 55047933 | 55048020 | 55047933 | ID=Msa0335840-mRNA-1:cds;Parent=Msa0335840-mRNA-1 |
| chr2_4 | CDS | 55046645 | 55046871 | 55046645 | ID=Msa0335840-mRNA-1:cds;Parent=Msa0335840-mRNA-1 |
| chr2_4 | CDS | 55046531 | 55046557 | 55046531 | ID=Msa0335840-mRNA-1:cds;Parent=Msa0335840-mRNA-1 |
| chr2_4 | three_prime_UTR | 55046183 | 55046530 | 55046183 | ID=Msa0335840-mRNA-1:three_prime_utr;Parent=Msa0335840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
