AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0623900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623900 MtrunA17_Chr4g0027221 99.262 542 4 0 1 542 1 542 0.0 1120
Msa0623900 MtrunA17_Chr7g0265711 67.041 534 162 3 10 542 9 529 0.0 783
Msa0623900 MtrunA17_Chr1g0179441 66.923 520 159 1 23 542 14 520 0.0 762
Msa0623900 MtrunA17_Chr1g0198111 67.675 529 157 3 15 542 12 527 0.0 746
Msa0623900 MtrunA17_Chr1g0179381 63.158 532 181 3 12 542 2 519 0.0 733
Msa0623900 MtrunA17_Chr1g0179421 62.782 532 184 3 12 542 2 520 0.0 728
Msa0623900 MtrunA17_Chr7g0264621 55.351 542 224 3 1 542 4 527 0.0 647
Msa0623900 MtrunA17_Chr1g0179391 69.207 328 101 0 141 468 1 328 0.0 518
Msa0623900 MtrunA17_Chr4g0000581 46.453 437 222 5 64 494 202 632 3.53e-138 416
Msa0623900 MtrunA17_Chr6g0451381 43.764 457 241 5 26 475 138 585 9.99e-138 414
Msa0623900 MtrunA17_Chr3g0139081 40.782 537 285 7 28 539 155 683 2.36e-134 405
Msa0623900 MtrunA17_Chr3g0135191 45.853 434 222 4 33 463 180 603 3.32e-134 405
Msa0623900 MtrunA17_Chr8g0339101 38.983 531 304 3 28 542 175 701 2.10e-127 388
Msa0623900 MtrunA17_Chr1g0179401 54.545 132 59 1 12 142 2 133 2.22e-45 157
Msa0623900 MtrunA17_Chr4g0064791 39.850 133 73 2 73 198 68 200 1.43e-23 98.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0623900 AT5G22740.1 78.889 540 100 3 5 542 5 532 0.0 885
Msa0623900 AT5G03760.1 68.727 534 153 4 10 542 10 530 0.0 782
Msa0623900 AT1G23480.1 60.985 528 192 3 16 542 39 553 0.0 699
Msa0623900 AT1G23480.2 60.985 528 192 3 16 542 39 553 0.0 699
Msa0623900 AT1G23480.3 63.360 494 167 3 50 542 1 481 0.0 685
Msa0623900 AT4G13410.1 57.358 530 207 3 12 540 26 537 0.0 674
Msa0623900 AT5G16190.3 59.496 516 193 2 26 540 4 504 0.0 656
Msa0623900 AT2G35650.1 56.947 511 204 2 19 529 42 536 0.0 647
Msa0623900 AT1G24070.1 57.367 509 203 2 32 540 58 552 0.0 640
Msa0623900 AT5G16190.4 55.920 549 193 3 26 540 4 537 0.0 639
Msa0623900 AT2G35650.4 58.750 480 182 2 50 529 1 464 0.0 629
Msa0623900 AT2G35650.2 58.750 480 182 2 50 529 1 464 0.0 629
Msa0623900 AT5G16190.2 64.531 437 155 0 26 462 4 440 0.0 616
Msa0623900 AT5G16190.1 61.354 458 161 2 84 540 1 443 0.0 608
Msa0623900 AT3G56000.1 55.098 510 209 5 35 539 29 523 0.0 594
Msa0623900 AT4G16590.1 51.544 518 203 3 23 540 51 520 0.0 572
Msa0623900 AT1G23480.4 63.840 401 132 2 142 542 21 408 0.0 560
Msa0623900 AT4G13410.3 60.406 394 138 2 147 540 1 376 0.0 531
Msa0623900 AT2G35650.3 59.432 387 141 2 143 529 8 378 3.19e-179 510
Msa0623900 AT4G13410.2 59.401 367 141 2 12 377 26 385 4.57e-168 482
Msa0623900 AT1G24070.2 60.112 356 130 3 32 387 58 401 4.20e-159 459
Msa0623900 AT4G31590.1 44.589 462 246 5 6 463 138 593 4.94e-142 426
Msa0623900 AT3G28180.1 47.465 434 212 5 33 463 145 565 4.58e-141 423
Msa0623900 AT3G07330.1 40.755 530 298 2 28 542 153 681 1.03e-140 422
Msa0623900 AT3G07330.2 40.755 530 298 2 28 542 153 681 1.03e-140 422
Msa0623900 AT2G24630.1 39.459 555 309 8 6 539 138 686 3.28e-136 411
Msa0623900 AT2G24630.2 39.459 555 309 8 6 539 138 686 3.28e-136 411
Msa0623900 AT4G07960.1 40.684 526 286 7 33 542 183 698 2.43e-126 386
Msa0623900 AT4G07960.2 40.684 526 286 7 33 542 183 698 2.43e-126 386

Find 138 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGACCTTTCCATAAATT+TGG 0.095743 4_3:-1631989 None:intergenic
TTACGAAACTTTAACGATTT+TGG 0.107510 4_3:-1632655 None:intergenic
CACCTCTTGTTTCTCTAATT+TGG 0.108542 4_3:-1628556 None:intergenic
AAATTATTTGTCACAAATTA+TGG 0.147142 4_3:-1633008 None:intergenic
ACCAAATCTACAGTTAATTT+AGG 0.179982 4_3:+1632760 Msa0623900:three_prime_UTR
ATAATTTGTGACAAATAATT+TGG 0.181703 4_3:+1633010 Msa0623900:three_prime_UTR
GAAAACAAGATCCAAATTTA+TGG 0.196456 4_3:+1631978 Msa0623900:CDS
CTGAGGTTCATGTTCCAATT+TGG 0.199327 4_3:+1631578 Msa0623900:CDS
CGTACCAAGGCGACCCTAAT+TGG 0.200533 4_3:+1631826 Msa0623900:CDS
CATGAGCAGGCTTAATTTCT+TGG 0.200959 4_3:+1632480 Msa0623900:intron
TTTCATGGAAAGAGTTTATA+TGG 0.210110 4_3:+1627569 Msa0623900:CDS
CTAATTGGTTTGCTAGAATA+TGG 0.211369 4_3:+1631841 Msa0623900:CDS
CATATTCTAGCAAACCAATT+AGG 0.216535 4_3:-1631840 None:intergenic
TGAGGTTCATGTTCCAATTT+GGG 0.231288 4_3:+1631579 Msa0623900:CDS
TTCCTTTACTTGCCCATCTT+TGG 0.241277 4_3:-1628520 None:intergenic
TCAGCTACTCATGCTTTCTT+TGG 0.243047 4_3:+1630598 Msa0623900:CDS
GAGCGGCTTGTGGGCTTTCA+TGG 0.247561 4_3:+1627884 Msa0623900:CDS
ACCTTCTCAATTGTAGGATT+TGG 0.248263 4_3:+1632598 Msa0623900:CDS
CCAAATCTACAGTTAATTTA+GGG 0.250194 4_3:+1632761 Msa0623900:three_prime_UTR
TCGCTGTTCGAGCAAGTCTT+AGG 0.257915 4_3:+1630935 Msa0623900:CDS
ATGCAGGGACGGCCGGTATT+TGG 0.277859 4_3:+1630848 Msa0623900:intron
CCCTAAATTAACTGTAGATT+TGG 0.280944 4_3:-1632761 None:intergenic
CCTTGAACAAGAGCAATTTC+AGG 0.303932 4_3:-1628716 None:intergenic
GACTCTGGTATATAAACTTT+AGG 0.307674 4_3:-1627423 None:intergenic
CATGCTTTCTTTGGCTTCAA+TGG 0.310696 4_3:+1630607 Msa0623900:CDS
TAGTTGTGCGCAAAGATATC+TGG 0.325326 4_3:+1633185 Msa0623900:three_prime_UTR
CAAGTCAAATTAAGATGATA+TGG 0.326108 4_3:+1627469 Msa0623900:CDS
CCTGAAATTGCTCTTGTTCA+AGG 0.326116 4_3:+1628716 Msa0623900:CDS
TGTAAAGAGAAAGAAATTAA+AGG 0.330426 4_3:+1627349 Msa0623900:five_prime_UTR
TTTATTGTTGTTGTTGTTAA+CGG 0.332004 4_3:-1631905 None:intergenic
GTTCAAGGTCGTTGGAGATT+TGG 0.339973 4_3:+1628731 Msa0623900:CDS
ATTGATGACAATGAAAATCT+TGG 0.341186 4_3:-1632800 None:intergenic
ACCTTAACCTTCTCAATTGT+AGG 0.346965 4_3:+1632592 Msa0623900:CDS
TCTGTTTGTTTCACATTCAT+AGG 0.354373 4_3:+1627296 Msa0623900:five_prime_UTR
CAGAACAACAGTTGAAGATA+TGG 0.365102 4_3:+1630909 Msa0623900:CDS
AAATGGCGATGGAGATTATA+AGG 0.367253 4_3:+1631319 Msa0623900:CDS
AAGAATGCAAGAGATGTCTT+TGG 0.370356 4_3:+1630543 Msa0623900:CDS
TCATATTTATAACGTTGTTC+AGG 0.375349 4_3:-1627630 None:intergenic
ATGTAAACAGCTCCCCAAAT+TGG 0.378565 4_3:-1631592 None:intergenic
ATTGTAGGATTTGGTTATGT+TGG 0.379370 4_3:+1632607 Msa0623900:CDS
TTCTACTGACCCTGTTGTTA+AGG 0.383212 4_3:+1627942 Msa0623900:CDS
CGCTGTTCGAGCAAGTCTTA+GGG 0.385066 4_3:+1630936 Msa0623900:CDS
CTGAATGCTCTCAGAGTACT+TGG 0.388265 4_3:-1631249 None:intergenic
TCCTACAATTGAGAAGGTTA+AGG 0.401066 4_3:-1632593 None:intergenic
ATATTCTAGCAAACCAATTA+GGG 0.403344 4_3:-1631839 None:intergenic
TTTCGATTGGAGCGGCTTGT+GGG 0.405849 4_3:+1627875 Msa0623900:CDS
TTGAGAAGGTTAAGGTTTGA+AGG 0.414275 4_3:-1632585 None:intergenic
CAAGATGATGAAGAACTTGC+TGG 0.416056 4_3:+1627660 Msa0623900:CDS
GGAATTTGAACAAGAACAAC+AGG 0.417109 4_3:-1627693 None:intergenic
ATGGCTCTTCTAAGAAAATC+AGG 0.417142 4_3:-1628674 None:intergenic
CAGTAGAATCATCAAGTACT+TGG 0.417324 4_3:-1627927 None:intergenic
GTGTGCAGAAAGTGAAGTTC+TGG 0.417439 4_3:+1631449 Msa0623900:intron
TATGGAAAACTAATAAATAA+AGG 0.423758 4_3:-1632990 None:intergenic
CACAAGACCATCTGTGCTGC+TGG 0.427142 4_3:-1631275 None:intergenic
TTCTTTGACAACATTATTTG+TGG 0.432930 4_3:+1633096 Msa0623900:three_prime_UTR
TTCACAGTTGAGCAAGAAGT+TGG 0.434090 4_3:+1630574 Msa0623900:CDS
GTAAAGAGAAAGAAATTAAA+GGG 0.434123 4_3:+1627350 Msa0623900:five_prime_UTR
ATAGAGAGATCTCATCAAAA+TGG 0.436466 4_3:+1627389 Msa0623900:exon
CAGGTTTATAAGGTTTCGAT+TGG 0.436880 4_3:+1627862 Msa0623900:intron
AATGCAGCAAATGGTGGAAA+TGG 0.437156 4_3:+1628493 Msa0623900:intron
CTTCTTGCTCAACTGTGAAA+TGG 0.437858 4_3:-1630570 None:intergenic
AGGTTAAGGTTTGAAGGAAA+AGG 0.445570 4_3:-1632579 None:intergenic
GTTTCGATTGGAGCGGCTTG+TGG 0.451144 4_3:+1627874 Msa0623900:CDS
AAAGGATCCAATAGAACAAA+AGG 0.455383 4_3:-1631780 None:intergenic
TTGCTCTTGTTCAAGGTCGT+TGG 0.464965 4_3:+1628723 Msa0623900:CDS
TAATTGGTTTGCTAGAATAT+GGG 0.467443 4_3:+1631842 Msa0623900:CDS
TCAGGATTACCAACAAGAAA+AGG 0.469315 4_3:-1628698 None:intergenic
ACCTCTCTTTCATTGAACAT+TGG 0.472020 4_3:-1627714 None:intergenic
TTTGTACCTTGGAGACCTCC+AGG 0.476674 4_3:+1630969 Msa0623900:CDS
TTCATGGAAAGAGTTTATAT+GGG 0.483092 4_3:+1627570 Msa0623900:CDS
AATATGGGAGGGCTAATGAA+TGG 0.486275 4_3:+1631857 Msa0623900:CDS
ATTTGTGACAAATAATTTGG+TGG 0.493699 4_3:+1633013 Msa0623900:three_prime_UTR
TCTTTGACAACATTATTTGT+GGG 0.499035 4_3:+1633097 Msa0623900:three_prime_UTR
ATATGGGAGGGCTAATGAAT+GGG 0.499596 4_3:+1631858 Msa0623900:CDS
AGCAGCAATTCGCCAAATAC+CGG 0.503544 4_3:-1630860 None:intergenic
CTCCTCTACAAAGTACAAGA+AGG 0.508959 4_3:+1632704 Msa0623900:three_prime_UTR
AAGACATGACATTCTCGAAA+AGG 0.512512 4_3:-1631798 None:intergenic
TTAGACTGTGTTAGATAGTG+TGG 0.518307 4_3:+1632912 Msa0623900:three_prime_UTR
AAGAAGATAGAAGTAATCAA+TGG 0.520681 4_3:+1632824 Msa0623900:three_prime_UTR
TGTTTACATTTCATTAGCAA+TGG 0.522412 4_3:+1627536 Msa0623900:CDS
AGGCTTAATTTCTTGGAGCT+AGG 0.522894 4_3:+1632487 Msa0623900:intron
TCCCTTCTTGTACTTTGTAG+AGG 0.524601 4_3:-1632706 None:intergenic
TGCCAAAGATGGGCAAGTAA+AGG 0.533260 4_3:+1628518 Msa0623900:CDS
TCTACAGTTAATTTAGGGGA+AGG 0.534022 4_3:+1632766 Msa0623900:three_prime_UTR
TTGTGGGCTTTCATGGCCGA+CGG 0.540449 4_3:+1627891 Msa0623900:CDS
CAAATTGGAACATGAACCTC+AGG 0.544374 4_3:-1631577 None:intergenic
GAGCTACGATCTTGCGAACA+AGG 0.545461 4_3:-1631501 None:intergenic
AACCTGAATGCAGGGACGGC+CGG 0.545969 4_3:+1630841 Msa0623900:intron
AAAGCAGGTGCATTGAAAGA+AGG 0.546072 4_3:+1628584 Msa0623900:CDS
TGGAAATGGAATGCCAAAGA+TGG 0.548465 4_3:+1628507 Msa0623900:CDS
CAAACCAATTAGGGTCGCCT+TGG 0.549066 4_3:-1631830 None:intergenic
AAGTCAAATTAAGATGATAT+GGG 0.549081 4_3:+1627470 Msa0623900:CDS
TTCGAGCAAGTCTTAGGGGA+TGG 0.551876 4_3:+1630941 Msa0623900:CDS
CTATCAATGAAGCAGGAGGA+TGG 0.553186 4_3:+1630881 Msa0623900:CDS
ATTGCTGCTATCAATGAAGC+AGG 0.553711 4_3:+1630874 Msa0623900:CDS
TGAGTTGAGAATGGTGATGA+TGG 0.557907 4_3:-1631620 None:intergenic
AGTTCTTCATCATCTTGAAG+AGG 0.559787 4_3:-1627654 None:intergenic
CAAGATCCAAATTTATGGAA+AGG 0.560045 4_3:+1631983 Msa0623900:CDS
GATTTACCTGGAGGTCTCCA+AGG 0.562965 4_3:-1630975 None:intergenic
CTCAGGAACCAAAATTGTGA+GGG 0.566831 4_3:-1631560 None:intergenic
TACTTTGTAGAGGAGAAACT+AGG 0.570931 4_3:-1632696 None:intergenic
ATTACCAACAAGAAAAGGAA+TGG 0.571120 4_3:-1628693 None:intergenic
TCCTCTACAAAGTACAAGAA+GGG 0.574023 4_3:+1632705 Msa0623900:three_prime_UTR
TAGTTCACTTGAAATGACTC+TGG 0.578254 4_3:-1627438 None:intergenic
TCCAATGTTCAATGAAAGAG+AGG 0.585758 4_3:+1627713 Msa0623900:CDS
TCAGATTCCAGCAGCACAGA+TGG 0.587972 4_3:+1631268 Msa0623900:CDS
ACCAAATCCTACAATTGAGA+AGG 0.592924 4_3:-1632599 None:intergenic
TTGGTTTGCTAGAATATGGG+AGG 0.593945 4_3:+1631845 Msa0623900:CDS
CTTCTAAGAAAATCAGGAGG+AGG 0.594412 4_3:-1628668 None:intergenic
ACAAGAGGTGGATACAAAGC+AGG 0.594663 4_3:+1628569 Msa0623900:CDS
TTGAGAATGGTGATGATGGA+AGG 0.598628 4_3:-1631616 None:intergenic
GAGGTTCATGTTCCAATTTG+GGG 0.599098 4_3:+1631580 Msa0623900:CDS
GCTGTTCGAGCAAGTCTTAG+GGG 0.606955 4_3:+1630937 Msa0623900:CDS
TGTTCCGACTGAGTTGAGAA+TGG 0.616682 4_3:-1631629 None:intergenic
CAGCAGCACAGATGGTCTTG+TGG 0.617433 4_3:+1631276 Msa0623900:CDS
ATCACCATTCTCAACTCAGT+CGG 0.619321 4_3:+1631625 Msa0623900:CDS
TGGTTTGCTAGAATATGGGA+GGG 0.620333 4_3:+1631846 Msa0623900:CDS
TGAATGAATGCAGCAAATGG+TGG 0.623051 4_3:+1628487 Msa0623900:intron
GGAAATGGAATGCCAAAGAT+GGG 0.629673 4_3:+1628508 Msa0623900:CDS
TCGCAAGATCGTAGCTCACA+TGG 0.630015 4_3:+1631507 Msa0623900:CDS
CAAATTAGAGAAACAAGAGG+TGG 0.630612 4_3:+1628557 Msa0623900:CDS
CAAATCTACAGTTAATTTAG+GGG 0.635764 4_3:+1632762 Msa0623900:three_prime_UTR
CCTCAGGAACCAAAATTGTG+AGG 0.640518 4_3:-1631561 None:intergenic
GGATGCTATGACTATGTGCA+TGG 0.646576 4_3:+1632535 Msa0623900:CDS
TTATAAGGTTTCGATTGGAG+CGG 0.647679 4_3:+1627867 Msa0623900:CDS
AAGTAATCAATGGAGAACAA+AGG 0.659534 4_3:+1632834 Msa0623900:three_prime_UTR
TACCAAATTAGAGAAACAAG+AGG 0.669909 4_3:+1628554 Msa0623900:CDS
TTTGGAATACCTTAACAACA+GGG 0.672446 4_3:-1627951 None:intergenic
TCAGGAACCAAAATTGTGAG+GGG 0.679056 4_3:-1631559 None:intergenic
CAGGAACCAAAATTGTGAGG+GGG 0.680810 4_3:-1631558 None:intergenic
GCTGCTATCAATGAAGCAGG+AGG 0.681209 4_3:+1630877 Msa0623900:CDS
GATGGAGATTATAAGGAACA+AGG 0.689212 4_3:+1631326 Msa0623900:CDS
TGGATCACGAGTCGATCCGT+CGG 0.693005 4_3:-1627907 None:intergenic
CATGTCTTTACATCGTACCA+AGG 0.699931 4_3:+1631813 Msa0623900:CDS
GCTCTTCTAAGAAAATCAGG+AGG 0.701297 4_3:-1628671 None:intergenic
TCAACTCAGTCGGAACACCA+AGG 0.719213 4_3:+1631635 Msa0623900:CDS
TATGAATGTGAAACAAACAG+AGG 0.730213 4_3:-1627294 None:intergenic
TAAGACTTGCTCGAACAGCG+AGG 0.744360 4_3:-1630933 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAACTTTTTTTTTTTTTTA+CGG + chr4_3:1627788-1627807 Msa0623900:intron 10.0%
!!! TTTTAAAATGACATTAAATT+TGG - chr4_3:1628150-1628169 None:intergenic 10.0%
!! ATTAAAAAAATGAAAAAACA+TGG - chr4_3:1628173-1628192 None:intergenic 10.0%
!!! AATGATTTTTATAATCAAAA+CGG - chr4_3:1628332-1628351 None:intergenic 10.0%
!!! ATATCTAAATTATCAATTTT+GGG - chr4_3:1628361-1628380 None:intergenic 10.0%
!!! AATATCTAAATTATCAATTT+TGG - chr4_3:1628362-1628381 None:intergenic 10.0%
!!! TAGATATTTTTATTTAAAAG+GGG + chr4_3:1628374-1628393 Msa0623900:intron 10.0%
!! GTTAATATAAAATTAAAAAG+TGG + chr4_3:1629359-1629378 Msa0623900:intron 10.0%
!! TTCTATAATAATTCTAATTT+GGG - chr4_3:1632307-1632326 None:intergenic 10.0%
!! ATTCTATAATAATTCTAATT+TGG - chr4_3:1632308-1632327 None:intergenic 10.0%
!!! TTAACAAGTTTTGATTTTTA+GGG + chr4_3:1627324-1627343 Msa0623900:five_prime_UTR 15.0%
!!! AAAAATTTGACATGAATTTT+TGG - chr4_3:1627972-1627991 None:intergenic 15.0%
!!! AGATATTTTTATTTAAAAGG+GGG + chr4_3:1628375-1628394 Msa0623900:intron 15.0%
!!! GTTTAATTTTGATATAATGT+CGG + chr4_3:1628795-1628814 Msa0623900:intron 15.0%
!!! ATGTGATTTTAGAAATAATT+AGG + chr4_3:1628928-1628947 Msa0623900:intron 15.0%
!! AATTTAGCAAAAATATTATG+TGG + chr4_3:1629512-1629531 Msa0623900:intron 15.0%
!! ATTTAGCAAAAATATTATGT+GGG + chr4_3:1629513-1629532 Msa0623900:intron 15.0%
!!! GTTAAATTAAGAAATAGTTT+TGG - chr4_3:1630051-1630070 None:intergenic 15.0%
!!! ACTTTTTTACTTTTATGTTT+TGG - chr4_3:1630418-1630437 None:intergenic 15.0%
!! TTACTAAAAAAATTACACTA+AGG - chr4_3:1630446-1630465 None:intergenic 15.0%
!!! ATTTTAATGATGTTTTGTTT+TGG + chr4_3:1631421-1631440 Msa0623900:intron 15.0%
!!! AAAATAATTGTATCTTCTTT+TGG + chr4_3:1632035-1632054 Msa0623900:intron 15.0%
!! AATGAACTCATAATATTATA+AGG + chr4_3:1632325-1632344 Msa0623900:intron 15.0%
!!! ATTTTGAAGTATCATATATA+TGG + chr4_3:1632435-1632454 Msa0623900:intron 15.0%
!!! TTTACAGTTATATATTTTGT+TGG + chr4_3:1632966-1632985 Msa0623900:three_prime_UTR 15.0%
!! TATGGAAAACTAATAAATAA+AGG - chr4_3:1632993-1633012 None:intergenic 15.0%
!! AAATTATTTGTCACAAATTA+TGG - chr4_3:1633011-1633030 None:intergenic 15.0%
!!! ATAATTTGTGACAAATAATT+TGG + chr4_3:1633010-1633029 Msa0623900:three_prime_UTR 15.0%
!! AACTATAAAAACTAATTCAT+TGG - chr4_3:1633170-1633189 None:intergenic 15.0%
!!! CTTAACAAGTTTTGATTTTT+AGG + chr4_3:1627323-1627342 Msa0623900:five_prime_UTR 20.0%
!!! TAACAAGTTTTGATTTTTAG+GGG + chr4_3:1627325-1627344 Msa0623900:five_prime_UTR 20.0%
!! TGTAAAGAGAAAGAAATTAA+AGG + chr4_3:1627349-1627368 Msa0623900:five_prime_UTR 20.0%
!! GTAAAGAGAAAGAAATTAAA+GGG + chr4_3:1627350-1627369 Msa0623900:five_prime_UTR 20.0%
!! AAGTCAAATTAAGATGATAT+GGG + chr4_3:1627470-1627489 Msa0623900:CDS 20.0%
!! TTCAAAAATGGTACAATTAA+TGG - chr4_3:1627510-1627529 None:intergenic 20.0%
!!! TATGGGTTTTGTTATTATTT+TGG + chr4_3:1627587-1627606 Msa0623900:CDS 20.0%
!!! TAATGTTGTTTTTCTATTAC+AGG + chr4_3:1627843-1627862 Msa0623900:intron 20.0%
!!! TTTTCTATTACAGGTTTATA+AGG + chr4_3:1627852-1627871 Msa0623900:intron 20.0%
!! AAGAAAAAAAAAACTCTGTT+GGG - chr4_3:1628265-1628284 None:intergenic 20.0%
!! AAAGAAAAAAAAAACTCTGT+TGG - chr4_3:1628266-1628285 None:intergenic 20.0%
!!! TAAATTATCAATTTTGGGAT+TGG - chr4_3:1628356-1628375 None:intergenic 20.0%
!!! GATATTTTTATTTAAAAGGG+GGG + chr4_3:1628376-1628395 Msa0623900:intron 20.0%
!!! GTTTTTTATATTGATTGTGT+AGG + chr4_3:1629196-1629215 Msa0623900:intron 20.0%
!! ATAATGTTACAAAAAAAACC+TGG + chr4_3:1629461-1629480 Msa0623900:intron 20.0%
!! TAATGTTACAAAAAAAACCT+GGG + chr4_3:1629462-1629481 Msa0623900:intron 20.0%
!! TTTAGCAAAAATATTATGTG+GGG + chr4_3:1629514-1629533 Msa0623900:intron 20.0%
!! TTCAATAAGTTAACATGTTT+AGG + chr4_3:1629773-1629792 Msa0623900:intron 20.0%
!! TAGTAGAAAACTTTGATATT+TGG - chr4_3:1629842-1629861 None:intergenic 20.0%
!! TTAATAATACTAAGTAGTAG+TGG + chr4_3:1630122-1630141 Msa0623900:intron 20.0%
!!! TGGTGTAGTTTATTTTATTT+AGG + chr4_3:1630142-1630161 Msa0623900:intron 20.0%
!! ATAAAAATCATGTGTTTATG+TGG + chr4_3:1630244-1630263 Msa0623900:intron 20.0%
!! TAAAAATCATGTGTTTATGT+GGG + chr4_3:1630245-1630264 Msa0623900:intron 20.0%
!!! TTAACTTTAACTTTTTCACA+AGG - chr4_3:1630391-1630410 None:intergenic 20.0%
!! TGTTATACTAATATTGAGAA+TGG + chr4_3:1630483-1630502 Msa0623900:intron 20.0%
!! TTCAAATTAATAAAGTGCAA+GGG - chr4_3:1630748-1630767 None:intergenic 20.0%
!!! CTTACTAATGTTTCATATTT+TGG + chr4_3:1630818-1630837 Msa0623900:intron 20.0%
!!! GAAATTATGATCAAGTTTTT+TGG - chr4_3:1631388-1631407 None:intergenic 20.0%
!!! TTTATTGTTGTTGTTGTTAA+CGG - chr4_3:1631908-1631927 None:intergenic 20.0%
!! AACAATAAAAAAGACAAATC+TGG + chr4_3:1631919-1631938 Msa0623900:CDS 20.0%
!!! ATATTCTAAAATCTTCTGTA+AGG - chr4_3:1632250-1632269 None:intergenic 20.0%
!!! AACAAGTTTTGATTTTTAGG+GGG + chr4_3:1627326-1627345 Msa0623900:five_prime_UTR 25.0%
! CAAGTCAAATTAAGATGATA+TGG + chr4_3:1627469-1627488 Msa0623900:CDS 25.0%
! TAAACACAAGCATTCAAAAA+TGG - chr4_3:1627522-1627541 None:intergenic 25.0%
! TGTTTACATTTCATTAGCAA+TGG + chr4_3:1627536-1627555 Msa0623900:CDS 25.0%
! TTTCATGGAAAGAGTTTATA+TGG + chr4_3:1627569-1627588 Msa0623900:CDS 25.0%
! TTCATGGAAAGAGTTTATAT+GGG + chr4_3:1627570-1627589 Msa0623900:CDS 25.0%
!!! TTATTTTGGTTAAGCTCTTT+TGG + chr4_3:1627601-1627620 Msa0623900:CDS 25.0%
! TCATATTTATAACGTTGTTC+AGG - chr4_3:1627633-1627652 None:intergenic 25.0%
!!! GTTCTTTGTTTTTGTTCTTT+TGG + chr4_3:1627756-1627775 Msa0623900:intron 25.0%
!! TTTGTTCTTTTGGATTCTTT+TGG + chr4_3:1627766-1627785 Msa0623900:intron 25.0%
! AATAACAACAAAACGTACTA+AGG - chr4_3:1628430-1628449 None:intergenic 25.0%
! TATTATGTATAGATCCAATG+TGG + chr4_3:1629609-1629628 Msa0623900:intron 25.0%
! ATTATGTATAGATCCAATGT+GGG + chr4_3:1629610-1629629 Msa0623900:intron 25.0%
! TTAGGAAAGAAAATGAAACA+AGG + chr4_3:1629791-1629810 Msa0623900:intron 25.0%
! TAGGAAAGAAAATGAAACAA+GGG + chr4_3:1629792-1629811 Msa0623900:intron 25.0%
! AAATGAAACAAGGGTAAAAA+TGG + chr4_3:1629801-1629820 Msa0623900:intron 25.0%
! AATGAAACAAGGGTAAAAAT+GGG + chr4_3:1629802-1629821 Msa0623900:intron 25.0%
! AATAATAATATGTGTCAGTG+TGG + chr4_3:1629928-1629947 Msa0623900:intron 25.0%
! ATAATAATATGTGTCAGTGT+GGG + chr4_3:1629929-1629948 Msa0623900:intron 25.0%
! TGACATAAGAAATGAAAAGA+GGG - chr4_3:1630020-1630039 None:intergenic 25.0%
! TCATTCATAATGATCATACT+TGG + chr4_3:1630072-1630091 Msa0623900:intron 25.0%
! CAAAAAGAAAAAGTCATCTT+TGG - chr4_3:1630272-1630291 None:intergenic 25.0%
!! CTTTTTCTTTTTGTACCTTT+TGG + chr4_3:1630279-1630298 Msa0623900:intron 25.0%
!!! TTTAACTTTTTCACAAGGTA+AGG - chr4_3:1630386-1630405 None:intergenic 25.0%
! ATTTGACGATGAAAAACATA+AGG - chr4_3:1630647-1630666 None:intergenic 25.0%
! CTTCAAATTAATAAAGTGCA+AGG - chr4_3:1630749-1630768 None:intergenic 25.0%
! TATTGAATAGAAGATTTACC+TGG - chr4_3:1630990-1631009 None:intergenic 25.0%
! ATAGATTGTGAATCATATGA+TGG + chr4_3:1631032-1631051 Msa0623900:intron 25.0%
! AAGGTATAATCCAAATTCAA+CGG - chr4_3:1631115-1631134 None:intergenic 25.0%
!! CATTGCAACTTTCTTTTTAT+AGG + chr4_3:1631212-1631231 Msa0623900:intron 25.0%
! ATATTCTAGCAAACCAATTA+GGG - chr4_3:1631842-1631861 None:intergenic 25.0%
!!! TAATTGGTTTGCTAGAATAT+GGG + chr4_3:1631842-1631861 Msa0623900:CDS 25.0%
!! TTTCTTTTGAACTTTGACAT+TGG - chr4_3:1631962-1631981 None:intergenic 25.0%
! GAAAACAAGATCCAAATTTA+TGG + chr4_3:1631978-1631997 Msa0623900:CDS 25.0%
!! CAAATTCTACATCTTCATTT+TGG + chr4_3:1632075-1632094 Msa0623900:intron 25.0%
! ATTAAAGGAATCTTGTAGTT+TGG + chr4_3:1632126-1632145 Msa0623900:intron 25.0%
! TCCTTCAATCATGAAATTAT+TGG - chr4_3:1632152-1632171 None:intergenic 25.0%
!!! GTTATTTTGTTGTTTCTAGT+AGG + chr4_3:1632197-1632216 Msa0623900:intron 25.0%
!! TTACGAAACTTTAACGATTT+TGG - chr4_3:1632658-1632677 None:intergenic 25.0%
! ACCAAATCTACAGTTAATTT+AGG + chr4_3:1632760-1632779 Msa0623900:three_prime_UTR 25.0%
! CCAAATCTACAGTTAATTTA+GGG + chr4_3:1632761-1632780 Msa0623900:three_prime_UTR 25.0%
! CAAATCTACAGTTAATTTAG+GGG + chr4_3:1632762-1632781 Msa0623900:three_prime_UTR 25.0%
!! ATTGATGACAATGAAAATCT+TGG - chr4_3:1632803-1632822 None:intergenic 25.0%
! AAGAAGATAGAAGTAATCAA+TGG + chr4_3:1632824-1632843 Msa0623900:three_prime_UTR 25.0%
!!! TTTTGTTTGCATAGATTGTT+TGG + chr4_3:1632936-1632955 Msa0623900:three_prime_UTR 25.0%
! ATTTGTGACAAATAATTTGG+TGG + chr4_3:1633013-1633032 Msa0623900:three_prime_UTR 25.0%
! TTCTTTGACAACATTATTTG+TGG + chr4_3:1633096-1633115 Msa0623900:three_prime_UTR 25.0%
! TCTTTGACAACATTATTTGT+GGG + chr4_3:1633097-1633116 Msa0623900:three_prime_UTR 25.0%
TATGAATGTGAAACAAACAG+AGG - chr4_3:1627297-1627316 None:intergenic 30.0%
TCTGTTTGTTTCACATTCAT+AGG + chr4_3:1627296-1627315 Msa0623900:five_prime_UTR 30.0%
ATAGAGAGATCTCATCAAAA+TGG + chr4_3:1627389-1627408 Msa0623900:exon 30.0%
GACTCTGGTATATAAACTTT+AGG - chr4_3:1627426-1627445 None:intergenic 30.0%
! TTTGGAATACCTTAACAACA+GGG - chr4_3:1627954-1627973 None:intergenic 30.0%
!!! TTTTGGAATACCTTAACAAC+AGG - chr4_3:1627955-1627974 None:intergenic 30.0%
AATTCTTCAATCACCCAATA+AGG + chr4_3:1627999-1628018 Msa0623900:intron 30.0%
AGAAAATGCAGATCCTTATT+GGG - chr4_3:1628015-1628034 None:intergenic 30.0%
AAGAAAATGCAGATCCTTAT+TGG - chr4_3:1628016-1628035 None:intergenic 30.0%
! AAGCTTTTACAAAATTACCG+TGG + chr4_3:1628111-1628130 Msa0623900:intron 30.0%
AAATGAATGAATGCAGCAAA+TGG + chr4_3:1628484-1628503 Msa0623900:intron 30.0%
TACCAAATTAGAGAAACAAG+AGG + chr4_3:1628554-1628573 Msa0623900:CDS 30.0%
ATTACCAACAAGAAAAGGAA+TGG - chr4_3:1628696-1628715 None:intergenic 30.0%
AATTCCTAGATTCATAGTGT+CGG + chr4_3:1629113-1629132 Msa0623900:intron 30.0%
AAGTCAAACAAGGACAAAAT+TGG - chr4_3:1629243-1629262 None:intergenic 30.0%
!! AATTTTGTCCTTGTTTGACT+TGG + chr4_3:1629242-1629261 Msa0623900:intron 30.0%
!! ATTTTGTCCTTGTTTGACTT+GGG + chr4_3:1629243-1629262 Msa0623900:intron 30.0%
!! AATTCTAAAGTATGAGTCGT+TGG - chr4_3:1629330-1629349 None:intergenic 30.0%
TCGTTAATAGGTATTTGTCA+AGG + chr4_3:1629537-1629556 Msa0623900:intron 30.0%
CGTTAATAGGTATTTGTCAA+GGG + chr4_3:1629538-1629557 Msa0623900:intron 30.0%
! TTTTCTACTAGTTCCATCAA+AGG + chr4_3:1629852-1629871 Msa0623900:intron 30.0%
!! GTGGTTTTGCAGTATATTTA+GGG + chr4_3:1629885-1629904 Msa0623900:intron 30.0%
AAATGAAAAGAGGGAATAGT+TGG - chr4_3:1630011-1630030 None:intergenic 30.0%
GTGACATAAGAAATGAAAAG+AGG - chr4_3:1630021-1630040 None:intergenic 30.0%
CATAATGATCATACTTGGTT+AGG + chr4_3:1630077-1630096 Msa0623900:intron 30.0%
! TTCTTTTTGTACCTTTTGGT+TGG + chr4_3:1630283-1630302 Msa0623900:intron 30.0%
TTTACCTTACCTAATGATGT+TGG + chr4_3:1630347-1630366 Msa0623900:intron 30.0%
TGGATTATACCTTAATTCAG+CGG + chr4_3:1631122-1631141 Msa0623900:intron 30.0%
TATCATATCCATCTTTAGTG+CGG + chr4_3:1631680-1631699 Msa0623900:intron 30.0%
! CAATTCACCTTTTGTTCTAT+TGG + chr4_3:1631773-1631792 Msa0623900:CDS 30.0%
AAAGGATCCAATAGAACAAA+AGG - chr4_3:1631783-1631802 None:intergenic 30.0%
CATATTCTAGCAAACCAATT+AGG - chr4_3:1631843-1631862 None:intergenic 30.0%
!! CTAATTGGTTTGCTAGAATA+TGG + chr4_3:1631841-1631860 Msa0623900:CDS 30.0%
!!! AACTTTGACATTGGTTTTCT+TGG - chr4_3:1631953-1631972 None:intergenic 30.0%
CAAGATCCAAATTTATGGAA+AGG + chr4_3:1631983-1632002 Msa0623900:CDS 30.0%
AACTGACCTTTCCATAAATT+TGG - chr4_3:1631992-1632011 None:intergenic 30.0%
GCCAATAATTTCATGATTGA+AGG + chr4_3:1632148-1632167 Msa0623900:intron 30.0%
! TGATTTGAGTTCCAAACAAA+GGG + chr4_3:1632369-1632388 Msa0623900:intron 30.0%
GTGAACTATAGTACAAAACT+AGG - chr4_3:1632404-1632423 None:intergenic 30.0%
! ATTGTAGGATTTGGTTATGT+TGG + chr4_3:1632607-1632626 Msa0623900:CDS 30.0%
! CTCAAAGAGATTTTACACTA+TGG - chr4_3:1632635-1632654 None:intergenic 30.0%
CCCTAAATTAACTGTAGATT+TGG - chr4_3:1632764-1632783 None:intergenic 30.0%
AAGTAATCAATGGAGAACAA+AGG + chr4_3:1632834-1632853 Msa0623900:three_prime_UTR 30.0%
! GGATAAATTATGCACTTTTG+AGG + chr4_3:1633034-1633053 Msa0623900:three_prime_UTR 30.0%
TTGTGGGAAAAAAAATCTTG+AGG + chr4_3:1633113-1633132 Msa0623900:three_prime_UTR 30.0%
TAGTTCACTTGAAATGACTC+TGG - chr4_3:1627441-1627460 None:intergenic 35.0%
! AATGGCACTTATGCTTTTCA+TGG + chr4_3:1627554-1627573 Msa0623900:CDS 35.0%
AGTTCTTCATCATCTTGAAG+AGG - chr4_3:1627657-1627676 None:intergenic 35.0%
GGAATTTGAACAAGAACAAC+AGG - chr4_3:1627696-1627715 None:intergenic 35.0%
TCCAATGTTCAATGAAAGAG+AGG + chr4_3:1627713-1627732 Msa0623900:CDS 35.0%
ACCTCTCTTTCATTGAACAT+TGG - chr4_3:1627717-1627736 None:intergenic 35.0%
CAGGTTTATAAGGTTTCGAT+TGG + chr4_3:1627862-1627881 Msa0623900:intron 35.0%
TTATAAGGTTTCGATTGGAG+CGG + chr4_3:1627867-1627886 Msa0623900:CDS 35.0%
CAGTAGAATCATCAAGTACT+TGG - chr4_3:1627930-1627949 None:intergenic 35.0%
TTTACAAAATTACCGTGGCT+CGG + chr4_3:1628116-1628135 Msa0623900:intron 35.0%
GTTGGGACTATAACTTTGAA+TGG - chr4_3:1628248-1628267 None:intergenic 35.0%
! CACCTCTTGTTTCTCTAATT+TGG - chr4_3:1628559-1628578 None:intergenic 35.0%
CAAATTAGAGAAACAAGAGG+TGG + chr4_3:1628557-1628576 Msa0623900:CDS 35.0%
! ATGGCTCTTCTAAGAAAATC+AGG - chr4_3:1628677-1628696 None:intergenic 35.0%
TCAGGATTACCAACAAGAAA+AGG - chr4_3:1628701-1628720 None:intergenic 35.0%
GAAAACAAACCCTTCAATCA+CGG + chr4_3:1629294-1629313 Msa0623900:intron 35.0%
AAAACAAACCCTTCAATCAC+GGG + chr4_3:1629295-1629314 Msa0623900:intron 35.0%
TGTTACAAAAAAAACCTGGG+CGG + chr4_3:1629465-1629484 Msa0623900:intron 35.0%
TATTATGTGGGGTCGTTAAT+AGG + chr4_3:1629525-1629544 Msa0623900:intron 35.0%
!!! ATTTTTGAGTTGACCCACAT+TGG - chr4_3:1629626-1629645 None:intergenic 35.0%
ATGTGGGTCAACTCAAAAAT+AGG + chr4_3:1629626-1629645 Msa0623900:intron 35.0%
GGTCAACTCAAAAATAGGAA+CGG + chr4_3:1629631-1629650 Msa0623900:intron 35.0%
GTCAACTCAAAAATAGGAAC+GGG + chr4_3:1629632-1629651 Msa0623900:intron 35.0%
AATATACTGCAAAACCACGT+GGG - chr4_3:1629883-1629902 None:intergenic 35.0%
AAATATACTGCAAAACCACG+TGG - chr4_3:1629884-1629903 None:intergenic 35.0%
!! CGTGGTTTTGCAGTATATTT+AGG + chr4_3:1629884-1629903 Msa0623900:intron 35.0%
AATGCATAATTCCGTTACAG+TGG - chr4_3:1630309-1630328 None:intergenic 35.0%
AAGGTAAAGTACACTATCAC+AGG - chr4_3:1630335-1630354 None:intergenic 35.0%
ATGACCAACATCATTAGGTA+AGG - chr4_3:1630354-1630373 None:intergenic 35.0%
! TCTTGATGACCAACATCATT+AGG - chr4_3:1630359-1630378 None:intergenic 35.0%
AAGAATGCAAGAGATGTCTT+TGG + chr4_3:1630543-1630562 Msa0623900:CDS 35.0%
TGATGTAATCACATGTGTCT+AGG - chr4_3:1630794-1630813 None:intergenic 35.0%
!!! ATATTTTGGAACCTGAATGC+AGG + chr4_3:1630832-1630851 Msa0623900:intron 35.0%
!!! TATTTTGGAACCTGAATGCA+GGG + chr4_3:1630833-1630852 Msa0623900:intron 35.0%
CAGAACAACAGTTGAAGATA+TGG + chr4_3:1630909-1630928 Msa0623900:CDS 35.0%
! GGATGGAAATTTTTGTACCT+TGG + chr4_3:1630958-1630977 Msa0623900:CDS 35.0%
TGAATAGAAGATTTACCTGG+AGG - chr4_3:1630987-1631006 None:intergenic 35.0%
AAATCTCAACCGCTGAATTA+AGG - chr4_3:1631134-1631153 None:intergenic 35.0%
! ATTTTGCGGAAAAGATTAGC+AGG - chr4_3:1631303-1631322 None:intergenic 35.0%
! TGCTAATCTTTTCCGCAAAA+TGG + chr4_3:1631302-1631321 Msa0623900:CDS 35.0%
AAATGGCGATGGAGATTATA+AGG + chr4_3:1631319-1631338 Msa0623900:CDS 35.0%
GATGGAGATTATAAGGAACA+AGG + chr4_3:1631326-1631345 Msa0623900:CDS 35.0%
TGAGGTTCATGTTCCAATTT+GGG + chr4_3:1631579-1631598 Msa0623900:CDS 35.0%
ATAGAAAATTAAGCGCACCT+TGG - chr4_3:1631655-1631674 None:intergenic 35.0%
CGATGAGTTTGACATAATCA+CGG - chr4_3:1631726-1631745 None:intergenic 35.0%
AAGACATGACATTCTCGAAA+AGG - chr4_3:1631801-1631820 None:intergenic 35.0%
! AACGGAATCTCCAAGTTTTT+CGG - chr4_3:1631890-1631909 None:intergenic 35.0%
AATCTTCTGTCATGTGCATA+TGG - chr4_3:1632275-1632294 None:intergenic 35.0%
! GTGATTTGAGTTCCAAACAA+AGG + chr4_3:1632368-1632387 Msa0623900:intron 35.0%
! GATTTGAGTTCCAAACAAAG+GGG + chr4_3:1632370-1632389 Msa0623900:intron 35.0%
!! ATGTGTTTTTGAACATGAGC+AGG + chr4_3:1632467-1632486 Msa0623900:intron 35.0%
AGGTTAAGGTTTGAAGGAAA+AGG - chr4_3:1632582-1632601 None:intergenic 35.0%
TTGAGAAGGTTAAGGTTTGA+AGG - chr4_3:1632588-1632607 None:intergenic 35.0%
ACCTTAACCTTCTCAATTGT+AGG + chr4_3:1632592-1632611 Msa0623900:CDS 35.0%
TCCTACAATTGAGAAGGTTA+AGG - chr4_3:1632596-1632615 None:intergenic 35.0%
ACCTTCTCAATTGTAGGATT+TGG + chr4_3:1632598-1632617 Msa0623900:CDS 35.0%
ACCAAATCCTACAATTGAGA+AGG - chr4_3:1632602-1632621 None:intergenic 35.0%
TACTTTGTAGAGGAGAAACT+AGG - chr4_3:1632699-1632718 None:intergenic 35.0%
TCCTCTACAAAGTACAAGAA+GGG + chr4_3:1632705-1632724 Msa0623900:three_prime_UTR 35.0%
TCTACAGTTAATTTAGGGGA+AGG + chr4_3:1632766-1632785 Msa0623900:three_prime_UTR 35.0%
TTAGACTGTGTTAGATAGTG+TGG + chr4_3:1632912-1632931 Msa0623900:three_prime_UTR 35.0%
CAAGATGATGAAGAACTTGC+TGG + chr4_3:1627660-1627679 Msa0623900:CDS 40.0%
TTCTACTGACCCTGTTGTTA+AGG + chr4_3:1627942-1627961 Msa0623900:CDS 40.0%
!! TATTTAAAAGGGGGGTGTTG+AGG + chr4_3:1628384-1628403 Msa0623900:intron 40.0%
TGAATGAATGCAGCAAATGG+TGG + chr4_3:1628487-1628506 Msa0623900:intron 40.0%
! AATGCAGCAAATGGTGGAAA+TGG + chr4_3:1628493-1628512 Msa0623900:intron 40.0%
TGGAAATGGAATGCCAAAGA+TGG + chr4_3:1628507-1628526 Msa0623900:CDS 40.0%
GGAAATGGAATGCCAAAGAT+GGG + chr4_3:1628508-1628527 Msa0623900:CDS 40.0%
TTCCTTTACTTGCCCATCTT+TGG - chr4_3:1628523-1628542 None:intergenic 40.0%
AAAGCAGGTGCATTGAAAGA+AGG + chr4_3:1628584-1628603 Msa0623900:CDS 40.0%
! CTTCTAAGAAAATCAGGAGG+AGG - chr4_3:1628671-1628690 None:intergenic 40.0%
! GCTCTTCTAAGAAAATCAGG+AGG - chr4_3:1628674-1628693 None:intergenic 40.0%
! AGAGCCATTCCTTTTCTTGT+TGG + chr4_3:1628689-1628708 Msa0623900:CDS 40.0%
CCTTGAACAAGAGCAATTTC+AGG - chr4_3:1628719-1628738 None:intergenic 40.0%
CCTGAAATTGCTCTTGTTCA+AGG + chr4_3:1628716-1628735 Msa0623900:CDS 40.0%
!! GATTGAAGGGTTTGTTTTCG+TGG - chr4_3:1629293-1629312 None:intergenic 40.0%
CTTCTTGCTCAACTGTGAAA+TGG - chr4_3:1630573-1630592 None:intergenic 40.0%
TTCACAGTTGAGCAAGAAGT+TGG + chr4_3:1630574-1630593 Msa0623900:CDS 40.0%
TCAGCTACTCATGCTTTCTT+TGG + chr4_3:1630598-1630617 Msa0623900:CDS 40.0%
! CATGCTTTCTTTGGCTTCAA+TGG + chr4_3:1630607-1630626 Msa0623900:CDS 40.0%
TCGTGAGTCAAGATATTGTG+TGG + chr4_3:1630679-1630698 Msa0623900:intron 40.0%
ATTGCTGCTATCAATGAAGC+AGG + chr4_3:1630874-1630893 Msa0623900:CDS 40.0%
CGATGTTTGACTATATCGAC+TGG - chr4_3:1631091-1631110 None:intergenic 40.0%
CAAACATCGACCGTTGAATT+TGG + chr4_3:1631102-1631121 Msa0623900:intron 40.0%
!! TAATCTCCATCGCCATTTTG+CGG - chr4_3:1631317-1631336 None:intergenic 40.0%
! TGTAATCCCCCTCACAATTT+TGG + chr4_3:1631552-1631571 Msa0623900:CDS 40.0%
TCAGGAACCAAAATTGTGAG+GGG - chr4_3:1631562-1631581 None:intergenic 40.0%
CTCAGGAACCAAAATTGTGA+GGG - chr4_3:1631563-1631582 None:intergenic 40.0%
CAAATTGGAACATGAACCTC+AGG - chr4_3:1631580-1631599 None:intergenic 40.0%
CTGAGGTTCATGTTCCAATT+TGG + chr4_3:1631578-1631597 Msa0623900:CDS 40.0%
GAGGTTCATGTTCCAATTTG+GGG + chr4_3:1631580-1631599 Msa0623900:CDS 40.0%
ATGTAAACAGCTCCCCAAAT+TGG - chr4_3:1631595-1631614 None:intergenic 40.0%
!! TTGAGAATGGTGATGATGGA+AGG - chr4_3:1631619-1631638 None:intergenic 40.0%
! TGAGTTGAGAATGGTGATGA+TGG - chr4_3:1631623-1631642 None:intergenic 40.0%
ATCACCATTCTCAACTCAGT+CGG + chr4_3:1631625-1631644 Msa0623900:CDS 40.0%
TGAATTGACCGCACTAAAGA+TGG - chr4_3:1631691-1631710 None:intergenic 40.0%
! TCATCGTGTGAAACTTTTGC+AGG + chr4_3:1631749-1631768 Msa0623900:intron 40.0%
CATGTCTTTACATCGTACCA+AGG + chr4_3:1631813-1631832 Msa0623900:CDS 40.0%
!! TTGGTTTGCTAGAATATGGG+AGG + chr4_3:1631845-1631864 Msa0623900:CDS 40.0%
!! TGGTTTGCTAGAATATGGGA+GGG + chr4_3:1631846-1631865 Msa0623900:CDS 40.0%
AATATGGGAGGGCTAATGAA+TGG + chr4_3:1631857-1631876 Msa0623900:CDS 40.0%
ATATGGGAGGGCTAATGAAT+GGG + chr4_3:1631858-1631877 Msa0623900:CDS 40.0%
GGACAAAATTCCCCTTTGTT+TGG - chr4_3:1632383-1632402 None:intergenic 40.0%
CATGAGCAGGCTTAATTTCT+TGG + chr4_3:1632480-1632499 Msa0623900:intron 40.0%
AGGCTTAATTTCTTGGAGCT+AGG + chr4_3:1632487-1632506 Msa0623900:intron 40.0%
!! GCAGTGTTTCTGTTCTTTTG+TGG + chr4_3:1632514-1632533 Msa0623900:CDS 40.0%
CTCCTCTACAAAGTACAAGA+AGG + chr4_3:1632704-1632723 Msa0623900:three_prime_UTR 40.0%
TCCCTTCTTGTACTTTGTAG+AGG - chr4_3:1632709-1632728 None:intergenic 40.0%
TAGTTGTGCGCAAAGATATC+TGG + chr4_3:1633185-1633204 Msa0623900:three_prime_UTR 40.0%
! AGAGAGAGAGAGTGTGAGAA+GGG - chr4_3:1627232-1627251 None:intergenic 45.0%
TTGGCAAAATTACCGAGCCA+CGG - chr4_3:1628131-1628150 None:intergenic 45.0%
TGCCAAAGATGGGCAAGTAA+AGG + chr4_3:1628518-1628537 Msa0623900:CDS 45.0%
ACAAGAGGTGGATACAAAGC+AGG + chr4_3:1628569-1628588 Msa0623900:CDS 45.0%
TTGCTCTTGTTCAAGGTCGT+TGG + chr4_3:1628723-1628742 Msa0623900:CDS 45.0%
GTTCAAGGTCGTTGGAGATT+TGG + chr4_3:1628731-1628750 Msa0623900:CDS 45.0%
! TCCTAGATTCATAGTGTCGG+TGG + chr4_3:1629116-1629135 Msa0623900:intron 45.0%
!! TTGTTTGACTTGGGTTAGCC+CGG + chr4_3:1629252-1629271 Msa0623900:intron 45.0%
AAACCCTTCAATCACGGGTA+GGG + chr4_3:1629300-1629319 Msa0623900:intron 45.0%
ACTAAATATCATAGCCGCCC+AGG - chr4_3:1629482-1629501 None:intergenic 45.0%
AAGGTCGACCATAAGACACA+TGG - chr4_3:1629968-1629987 None:intergenic 45.0%
!! TTGGAAGTGTCGGCAACAAA+GGG - chr4_3:1629992-1630011 None:intergenic 45.0%
! GAGGGAATAGTTGGAAGTGT+CGG - chr4_3:1630002-1630021 None:intergenic 45.0%
!! CTTTTGGTTGGCCACTGTAA+CGG + chr4_3:1630295-1630314 Msa0623900:intron 45.0%
TGGATTCGAGCCCACATATT+TGG + chr4_3:1630699-1630718 Msa0623900:intron 45.0%
GACGATGCAGCCAAATATGT+GGG - chr4_3:1630712-1630731 None:intergenic 45.0%
AGACGATGCAGCCAAATATG+TGG - chr4_3:1630713-1630732 None:intergenic 45.0%
GACGTGTCTTGTGTCAAACA+CGG + chr4_3:1630768-1630787 Msa0623900:intron 45.0%
AGCAGCAATTCGCCAAATAC+CGG - chr4_3:1630863-1630882 None:intergenic 45.0%
CTATCAATGAAGCAGGAGGA+TGG + chr4_3:1630881-1630900 Msa0623900:CDS 45.0%
GCTGCAAAAGACTATGAGCT+AGG - chr4_3:1631065-1631084 None:intergenic 45.0%
! CTGAATGCTCTCAGAGTACT+TGG - chr4_3:1631252-1631271 None:intergenic 45.0%
! TCTTTTCCGCAAAATGGCGA+TGG + chr4_3:1631308-1631327 Msa0623900:CDS 45.0%
GTGTGCAGAAAGTGAAGTTC+TGG + chr4_3:1631449-1631468 Msa0623900:intron 45.0%
CAGGAACCAAAATTGTGAGG+GGG - chr4_3:1631561-1631580 None:intergenic 45.0%
CCTCAGGAACCAAAATTGTG+AGG - chr4_3:1631564-1631583 None:intergenic 45.0%
!!! CCTCACAATTTTGGTTCCTG+AGG + chr4_3:1631561-1631580 Msa0623900:CDS 45.0%
! TGTTCCGACTGAGTTGAGAA+TGG - chr4_3:1631632-1631651 None:intergenic 45.0%
TGGGTTGTGACCGAAAAACT+TGG + chr4_3:1631877-1631896 Msa0623900:CDS 45.0%
CTCACACTAGCTGGCATTAA+AGG + chr4_3:1632111-1632130 Msa0623900:intron 45.0%
TTCTGTAAGGCTCATGTGCA+TGG - chr4_3:1632237-1632256 None:intergenic 45.0%
GGATGCTATGACTATGTGCA+TGG + chr4_3:1632535-1632554 Msa0623900:CDS 45.0%
!!! TTTAGATATTTTTATTTAAA+AGG + chr4_3:1628372-1628391 Msa0623900:intron 5.0%
!!! TTAGATATTTTTATTTAAAA+GGG + chr4_3:1628373-1628392 Msa0623900:intron 5.0%
!!! TTTTTTTAGTAATAAAATTA+AGG + chr4_3:1630454-1630473 Msa0623900:intron 5.0%
!!! TTTTTTTTTTTTATAGATTT+TGG - chr4_3:1632871-1632890 None:intergenic 5.0%
! GAGAGAGAGAGAGTGTGAGA+AGG - chr4_3:1627233-1627252 None:intergenic 50.0%
TTTCGATTGGAGCGGCTTGT+GGG + chr4_3:1627875-1627894 Msa0623900:CDS 50.0%
GCCACCGACACTATGAATCT+AGG - chr4_3:1629120-1629139 None:intergenic 50.0%
GGGCTAACCCAAGTCAAACA+AGG - chr4_3:1629253-1629272 None:intergenic 50.0%
!! ACTTGGGTTAGCCCGGTTTA+GGG + chr4_3:1629259-1629278 Msa0623900:intron 50.0%
TTAGCCCGGTTTAGGGGAAT+GGG + chr4_3:1629266-1629285 Msa0623900:intron 50.0%
CAAACCCTTCAATCACGGGT+AGG + chr4_3:1629299-1629318 Msa0623900:intron 50.0%
GTTCCCTACCCGTGATTGAA+GGG - chr4_3:1629306-1629325 None:intergenic 50.0%
TGTTCCCTACCCGTGATTGA+AGG - chr4_3:1629307-1629326 None:intergenic 50.0%
CCATAAGACACATGGTGGCA+TGG - chr4_3:1629960-1629979 None:intergenic 50.0%
CCATGCCACCATGTGTCTTA+TGG + chr4_3:1629957-1629976 Msa0623900:intron 50.0%
GTCGACCATAAGACACATGG+TGG - chr4_3:1629965-1629984 None:intergenic 50.0%
!! AGTGTCGGCAACAAAGGGTA+AGG - chr4_3:1629987-1630006 None:intergenic 50.0%
!! GTTGGAAGTGTCGGCAACAA+AGG - chr4_3:1629993-1630012 None:intergenic 50.0%
CGTTACAGTGGCCAACCAAA+AGG - chr4_3:1630297-1630316 None:intergenic 50.0%
TTGGAACCTGAATGCAGGGA+CGG + chr4_3:1630837-1630856 Msa0623900:intron 50.0%
GCTGCTATCAATGAAGCAGG+AGG + chr4_3:1630877-1630896 Msa0623900:CDS 50.0%
! TAAGACTTGCTCGAACAGCG+AGG - chr4_3:1630936-1630955 None:intergenic 50.0%
TCGCTGTTCGAGCAAGTCTT+AGG + chr4_3:1630935-1630954 Msa0623900:CDS 50.0%
CGCTGTTCGAGCAAGTCTTA+GGG + chr4_3:1630936-1630955 Msa0623900:CDS 50.0%
GCTGTTCGAGCAAGTCTTAG+GGG + chr4_3:1630937-1630956 Msa0623900:CDS 50.0%
TTCGAGCAAGTCTTAGGGGA+TGG + chr4_3:1630941-1630960 Msa0623900:CDS 50.0%
TTTGTACCTTGGAGACCTCC+AGG + chr4_3:1630969-1630988 Msa0623900:CDS 50.0%
GATTTACCTGGAGGTCTCCA+AGG - chr4_3:1630978-1630997 None:intergenic 50.0%
TCAGATTCCAGCAGCACAGA+TGG + chr4_3:1631268-1631287 Msa0623900:CDS 50.0%
GAGCTACGATCTTGCGAACA+AGG - chr4_3:1631504-1631523 None:intergenic 50.0%
TCGCAAGATCGTAGCTCACA+TGG + chr4_3:1631507-1631526 Msa0623900:CDS 50.0%
TCAACTCAGTCGGAACACCA+AGG + chr4_3:1631635-1631654 Msa0623900:CDS 50.0%
CAAACCAATTAGGGTCGCCT+TGG - chr4_3:1631833-1631852 None:intergenic 50.0%
CACTTGTCACTCACACTAGC+TGG + chr4_3:1632102-1632121 Msa0623900:intron 50.0%
GTTTCGATTGGAGCGGCTTG+TGG + chr4_3:1627874-1627893 Msa0623900:CDS 55.0%
TTGTGGGCTTTCATGGCCGA+CGG + chr4_3:1627891-1627910 Msa0623900:CDS 55.0%
TGGATCACGAGTCGATCCGT+CGG - chr4_3:1627910-1627929 None:intergenic 55.0%
!! TCATAGTGTCGGTGGCTTGC+TGG + chr4_3:1629124-1629143 Msa0623900:intron 55.0%
!! GACTTGGGTTAGCCCGGTTT+AGG + chr4_3:1629258-1629277 Msa0623900:intron 55.0%
!! CTTGGGTTAGCCCGGTTTAG+GGG + chr4_3:1629260-1629279 Msa0623900:intron 55.0%
GTTAGCCCGGTTTAGGGGAA+TGG + chr4_3:1629265-1629284 Msa0623900:intron 55.0%
TGGACCCATTCCCCTAAACC+GGG - chr4_3:1629273-1629292 None:intergenic 55.0%
GTGGACCCATTCCCCTAAAC+CGG - chr4_3:1629274-1629293 None:intergenic 55.0%
!! CACGTGGGAAGTGCCTTTGA+TGG - chr4_3:1629868-1629887 None:intergenic 55.0%
!! CATCAAAGGCACTTCCCACG+TGG + chr4_3:1629866-1629885 Msa0623900:intron 55.0%
CACAAGACCATCTGTGCTGC+TGG - chr4_3:1631278-1631297 None:intergenic 55.0%
! CAGCAGCACAGATGGTCTTG+TGG + chr4_3:1631276-1631295 Msa0623900:CDS 55.0%
CGTACCAAGGCGACCCTAAT+TGG + chr4_3:1631826-1631845 Msa0623900:CDS 55.0%
GAGCGGCTTGTGGGCTTTCA+TGG + chr4_3:1627884-1627903 Msa0623900:CDS 60.0%
AACCTGAATGCAGGGACGGC+CGG + chr4_3:1630841-1630860 Msa0623900:intron 60.0%
ATGCAGGGACGGCCGGTATT+TGG + chr4_3:1630848-1630867 Msa0623900:intron 60.0%
TACCGGCCGTCCCTGCATTC+AGG - chr4_3:1630846-1630865 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 1627228 1633263 1627228 ID=Msa0623900;Name=Msa0623900
chr4_3 mRNA 1627228 1633263 1627228 ID=Msa0623900-mRNA-1;Parent=Msa0623900;Name=Msa0623900-mRNA-1;_AED=0.04;_eAED=0.04;_QI=180|1|1|1|1|1|9|621|542
chr4_3 exon 1627228 1627734 1627228 ID=Msa0623900-mRNA-1:exon:434;Parent=Msa0623900-mRNA-1
chr4_3 exon 1627865 1627963 1627865 ID=Msa0623900-mRNA-1:exon:435;Parent=Msa0623900-mRNA-1
chr4_3 exon 1628500 1628752 1628500 ID=Msa0623900-mRNA-1:exon:436;Parent=Msa0623900-mRNA-1
chr4_3 exon 1630518 1630628 1630518 ID=Msa0623900-mRNA-1:exon:437;Parent=Msa0623900-mRNA-1
chr4_3 exon 1630854 1630990 1630854 ID=Msa0623900-mRNA-1:exon:438;Parent=Msa0623900-mRNA-1
chr4_3 exon 1631234 1631347 1631234 ID=Msa0623900-mRNA-1:exon:439;Parent=Msa0623900-mRNA-1
chr4_3 exon 1631457 1631656 1631457 ID=Msa0623900-mRNA-1:exon:440;Parent=Msa0623900-mRNA-1
chr4_3 exon 1631771 1632004 1631771 ID=Msa0623900-mRNA-1:exon:441;Parent=Msa0623900-mRNA-1
chr4_3 exon 1632489 1633263 1632489 ID=Msa0623900-mRNA-1:exon:442;Parent=Msa0623900-mRNA-1
chr4_3 five_prime_UTR 1627228 1627407 1627228 ID=Msa0623900-mRNA-1:five_prime_utr;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1627408 1627734 1627408 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1627865 1627963 1627865 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1628500 1628752 1628500 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1630518 1630628 1630518 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1630854 1630990 1630854 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1631234 1631347 1631234 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1631457 1631656 1631457 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1631771 1632004 1631771 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 CDS 1632489 1632642 1632489 ID=Msa0623900-mRNA-1:cds;Parent=Msa0623900-mRNA-1
chr4_3 three_prime_UTR 1632643 1633263 1632643 ID=Msa0623900-mRNA-1:three_prime_utr;Parent=Msa0623900-mRNA-1
Gene Sequence

>Msa0623900

ATGGTTGAGTCAGAACCTAAAGTTTATATACCAGAGTCATTTCAAGTGAACTATGATGTGTCAAGTCAAATTAAGATGATATGGGATGTAATGAAAGCACCATTAATTGTACCATTTTTGAATGCTTGTGTTTACATTTCATTAGCAATGGCACTTATGCTTTTCATGGAAAGAGTTTATATGGGTTTTGTTATTATTTTGGTTAAGCTCTTTTGGAAAAAACCTGAACAACGTTATAAATATGAGCCTCTTCAAGATGATGAAGAACTTGCTGGCTCTAATTTTCCTGTTGTTCTTGTTCAAATTCCAATGTTCAATGAAAGAGAGGTTTATAAGGTTTCGATTGGAGCGGCTTGTGGGCTTTCATGGCCGACGGATCGACTCGTGATCCAAGTACTTGATGATTCTACTGACCCTGTTGTTAAGCAAATGGTGGAAATGGAATGCCAAAGATGGGCAAGTAAAGGAATAAATATAACATACCAAATTAGAGAAACAAGAGGTGGATACAAAGCAGGTGCATTGAAAGAAGGATTAAAACGTAGCTATGTCAAGCATTGTGAATATGTTGTCATATTTGATGCTGATTTTAGTCCTCCTCCTGATTTTCTTAGAAGAGCCATTCCTTTTCTTGTTGGTAATCCTGAAATTGCTCTTGTTCAAGGTCGTTGGAGATTTGTGAATGCAAATGAGTGTTTGTTGACAAGAATGCAAGAGATGTCTTTGGATTACCATTTCACAGTTGAGCAAGAAGTTGGATCAGCTACTCATGCTTTCTTTGGCTTCAATGGGACGGCCGGTATTTGGCGAATTGCTGCTATCAATGAAGCAGGAGGATGGAAAGACAGAACAACAGTTGAAGATATGGACCTCGCTGTTCGAGCAAGTCTTAGGGGATGGAAATTTTTGTACCTTGGAGACCTCCAGGCAAACAGTGAACTTCCAAGTACTCTGAGAGCATTCAGATTCCAGCAGCACAGATGGTCTTGTGGTCCTGCTAATCTTTTCCGCAAAATGGCGATGGAGATTATAAGGAACAAGAAAGTGAAGTTCTGGAAGAAAGTATATGTCATATACAGCTTTTTCCTTGTTCGCAAGATCGTAGCTCACATGGTCACTTTTTTCTTCTACTGTCTTGTAATCCCCCTCACAATTTTGGTTCCTGAGGTTCATGTTCCAATTTGGGGAGCTGTTTACATTCCTTCCATCATCACCATTCTCAACTCAGTCGGAACACCAAGGTCAATTCACCTTTTGTTCTATTGGATCCTTTTCGAGAATGTCATGTCTTTACATCGTACCAAGGCGACCCTAATTGGTTTGCTAGAATATGGGAGGGCTAATGAATGGGTTGTGACCGAAAAACTTGGAGATTCCGTTAACAACAACAACAATAAAAAAGACAAATCTGGAGATGCTGCCAAGAAAACCAATGTCAAAGTTCAAAAGAAAACAAGATCCAAATTTATGGAAAGGCTTAATTTCTTGGAGCTAGGATTTGCAGTGTTTCTGTTCTTTTGTGGATGCTATGACTATGTGCATGGAAAACACAACTACTTTATCTACCTTTTCCTTCAAACCTTAACCTTCTCAATTGTAGGATTTGGTTATGTTGGAACCATAGTGTAA
Protein sequence

>Msa0623900

MVESEPKVYIPESFQVNYDVSSQIKMIWDVMKAPLIVPFLNACVYISLAMALMLFMERVYMGFVIILVKLFWKKPEQRYKYEPLQDDEELAGSNFPVVLVQIPMFNEREVYKVSIGAACGLSWPTDRLVIQVLDDSTDPVVKQMVEMECQRWASKGINITYQIRETRGGYKAGALKEGLKRSYVKHCEYVVIFDADFSPPPDFLRRAIPFLVGNPEIALVQGRWRFVNANECLLTRMQEMSLDYHFTVEQEVGSATHAFFGFNGTAGIWRIAAINEAGGWKDRTTVEDMDLAVRASLRGWKFLYLGDLQANSELPSTLRAFRFQQHRWSCGPANLFRKMAMEIIRNKKVKFWKKVYVIYSFFLVRKIVAHMVTFFFYCLVIPLTILVPEVHVPIWGAVYIPSIITILNSVGTPRSIHLLFYWILFENVMSLHRTKATLIGLLEYGRANEWVVTEKLGDSVNNNNNKKDKSGDAAKKTNVKVQKKTRSKFMERLNFLELGFAVFLFFCGCYDYVHGKHNYFIYLFLQTLTFSIVGFGYVGTIV*