AlfalfaGEDB | Msa1383560

M. sativa cultivar zhongmu-4 / Msa1383560

KEGG: K18822
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383560	XP_003613714.1	92.823	209	15	0	1	209	1	209	6.18e-139	408

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383560	sp\|D4Q9Z4\|SGT2_SOYBN	62.562	203	76	0	6	208	2	204	8.08e-89	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383560	G7KDU4	92.823	209	15	0	1	209	1	209	2.95e-139	408

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0096590	Msa1383560	0.805522	1.281608e-49	-8.615850e-47
Msa0209060	Msa1383560	0.802732	4.879931e-49	-8.615850e-47
Msa0288540	Msa1383560	0.802090	6.617237e-49	-8.615850e-47
Msa0326770	Msa1383560	0.851067	1.129971e-60	-8.615850e-47
Msa0372840	Msa1383560	0.912925	1.112787e-83	-8.615850e-47
Msa0439000	Msa1383560	0.804873	1.752573e-49	-8.615850e-47
Msa0439370	Msa1383560	0.834330	3.190479e-56	-8.615850e-47
Msa0483080	Msa1383560	0.813425	2.575919e-51	-8.615850e-47
Msa0632980	Msa1383560	0.809093	2.243288e-50	-8.615850e-47
Msa0765530	Msa1383560	0.838791	2.331261e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383560	MtrunA17_Chr5g0416741	92.823	209	15	0	1	209	1	209	5.68e-143	408
Msa1383560	MtrunA17_Chr6g0463891	66.667	210	68	2	2	209	1	210	1.81e-99	297
Msa1383560	MtrunA17_Chr7g0231651	65.072	209	72	1	2	209	3	211	5.12e-98	283
Msa1383560	MtrunA17_Chr5g0416821	65.385	208	71	1	2	208	3	210	6.81e-95	285
Msa1383560	MtrunA17_Chr5g0401851	61.111	198	77	0	12	209	9	206	2.93e-86	263
Msa1383560	MtrunA17_Chr8g0355221	57.635	203	83	2	8	209	10	210	4.34e-77	239
Msa1383560	MtrunA17_Chr1g0165701	56.158	203	86	2	8	209	10	210	1.52e-73	230
Msa1383560	MtrunA17_Chr7g0243921	52.020	198	90	1	5	202	32	224	4.96e-68	208
Msa1383560	MtrunA17_Chr7g0243951	51.500	200	97	0	3	202	1	200	1.35e-66	212
Msa1383560	MtrunA17_Chr7g0243801	51.515	198	95	1	8	204	2	199	4.35e-65	208

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1383560	AT4G34135.2	32.843	204	128	3	12	207	10	212	7.67e-36	129
Msa1383560	AT4G34135.1	33.333	192	120	2	12	195	10	201	1.16e-34	128
Msa1383560	AT4G34131.1	32.812	192	121	2	12	195	9	200	3.31e-33	124
Msa1383560	AT2G15480.1	29.717	212	140	3	5	208	2	212	1.01e-31	120
Msa1383560	AT2G15480.2	29.717	212	140	3	5	208	2	212	1.07e-31	120
Msa1383560	AT2G36750.1	31.959	194	123	3	12	196	9	202	3.39e-31	119
Msa1383560	AT3G53150.1	32.995	197	127	3	7	199	16	211	1.09e-30	117
Msa1383560	AT2G15490.2	30.601	183	119	2	14	188	8	190	1.24e-30	114
Msa1383560	AT2G15490.3	31.016	187	121	2	14	192	8	194	2.30e-29	114
Msa1383560	AT2G15490.1	31.016	187	121	2	14	192	8	194	2.61e-29	114

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Find 51 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGTTGGTCTTCCTGT+TGG	0.499951	tig0020603:-86388	Msa1383560:CDS
AACAAGTTGGTCTTCCTGTT+GGG	0.302531	tig0020603:-86387	Msa1383560:CDS
AATCGCGGTCAATGGACTTT+TGG	0.288470	tig0020603:+86458	None:intergenic
AATTGCAGCGTTGCCTGCGG+TGG	0.581566	tig0020603:+86483	None:intergenic
ACAAGTTGGTCTTCCTGTTG+GGG	0.498942	tig0020603:-86386	Msa1383560:CDS
ACATGCAACTCACACCAGGG+TGG	0.724325	tig0020603:-86131	Msa1383560:CDS
ACCCTTGCCATATCAACCAT+AGG	0.629141	tig0020603:+86541	None:intergenic
ACCTACCATCGTGAATTTAT+CGG	0.396689	tig0020603:+86099	None:intergenic
ACGATTGAAATCGCGGTCAA+TGG	0.442161	tig0020603:+86450	None:intergenic
ACGTCTTCGAAAATCTATTA+TGG	0.276486	tig0020603:-86331	Msa1383560:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAAGTCACATAATTCCTA+TGG	-	tig0020603:86074-86093	Msa1383560:CDS	30.0%
ACGTCTTCGAAAATCTATTA+TGG	-	tig0020603:86300-86319	Msa1383560:CDS	30.0%
ATGAGAAAGTCAAATGCTTA+TGG	-	tig0020603:86600-86619	Msa1383560:CDS	30.0%
AGCTGAAACGAATAACTTGA+AGG	-	tig0020603:86029-86048	Msa1383560:CDS	35.0%
GATTCTCTATTTGTGGTTGT+AGG	+	tig0020603:86335-86354	None:intergenic	35.0%
TTAGTGACATGTTTCATCCT+TGG	-	tig0020603:86385-86404	Msa1383560:CDS	35.0%
GTAGAAGTTGCAGAAAAGTT+AGG	-	tig0020603:86411-86430	Msa1383560:CDS	35.0%
TCGTGAATTTATCGGAATCA+TGG	+	tig0020603:86527-86546	None:intergenic	35.0%
TGATTCCGATAAATTCACGA+TGG	-	tig0020603:86527-86546	Msa1383560:CDS	35.0%
ACCTACCATCGTGAATTTAT+CGG	+	tig0020603:86535-86554	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020603	gene	86012	86641	86012	ID=Msa1383560;Name=Msa1383560
tig0020603	mRNA	86012	86641	86012	ID=Msa1383560-mRNA-1;Parent=Msa1383560;Name=Msa1383560-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|209
tig0020603	exon	86012	86641	86012	ID=Msa1383560-mRNA-1:exon:8628;Parent=Msa1383560-mRNA-1
tig0020603	CDS	86012	86641	86012	ID=Msa1383560-mRNA-1:cds;Parent=Msa1383560-mRNA-1

Gene Sequence

>Msa1383560

ATGGTGTTGTCTAATGAAGCTGAAACGAATAACTTGAAGGTTATTTTCCTTCCGTTCTTATCTACAAGTCACATAATTCCTATGGTTGATATGGCAAGGGTATTTGCCATGCAAGGTGTGGATGTCACCATAATCACCACCGCAGGCAACGCTGCAATTTTCCAAAAGTCCATTGACCGCGATTTCAATCGTGGTCGCTCCATAAAAACACATGTTTTGGAGTTTCCAGCTAAACAAGTTGGTCTTCCTGTTGGGGTGGAAACCTTCAACGCCGATACTCCTCCTAACACGTCTTCGAAAATCTATTATGGACTTGCAATCCTACAACCACAAATAGAGAATCTGTTTTTAGAGTTAGAAGCTGATTGCATAGTTAGTGACATGTTTCATCCTTGGACTGTAGAAGTTGCAGAAAAGTTAGGCATTCCACGGATTATTTTCTATGCTGCGAGTGTTCTCTCTCGATCTGCGGTTCACACGTTGGAGCAACATGCAACTCACACCAGGGTGGACCATGATTCCGATAAATTCACGATGGTAGGTTTGCCACATAAACTGGAGATGACAAGATTGCAATTACCAGATTGGATGAGAAAGTCAAATGCTTATGGACAGTTAATGAAGGTTTGA

Protein sequence

>Msa1383560

MVLSNEAETNNLKVIFLPFLSTSHIIPMVDMARVFAMQGVDVTIITTAGNAAIFQKSIDRDFNRGRSIKTHVLEFPAKQVGLPVGVETFNADTPPNTSSKIYYGLAILQPQIENLFLELEADCIVSDMFHPWTVEVAEKLGIPRIIFYAASVLSRSAVHTLEQHATHTRVDHDSDKFTMVGLPHKLEMTRLQLPDWMRKSNAYGQLMKV*