Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632980 | XP_003605087.1 | 86.713 | 286 | 18 | 1 | 1 | 266 | 44 | 329 | 2.70e-175 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632980 | sp|Q40316|VESTR_MEDSA | 47.018 | 285 | 131 | 2 | 1 | 266 | 43 | 326 | 1.18e-86 | 264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632980 | G7JDF6 | 86.713 | 286 | 18 | 1 | 1 | 266 | 44 | 329 | 1.29e-175 | 496 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0632980 | 0.820626 | 6.209433e-53 | -8.615850e-47 |
| Msa0632980 | Msa0671640 | 0.887766 | 1.069135e-72 | -8.615850e-47 |
| Msa0632980 | Msa0735140 | 0.821167 | 4.663395e-53 | -8.615850e-47 |
| Msa0632980 | Msa0777070 | 0.809696 | 1.665654e-50 | -8.615850e-47 |
| Msa0632980 | Msa0814160 | 0.835895 | 1.285359e-56 | -8.615850e-47 |
| Msa0632980 | Msa0854840 | 0.808007 | 3.825975e-50 | -8.615850e-47 |
| Msa0632980 | Msa0861730 | 0.811986 | 5.319201e-51 | -8.615850e-47 |
| Msa0632980 | Msa0886800 | 0.802683 | 4.994059e-49 | -8.615850e-47 |
| Msa0632980 | Msa0894070 | 0.813464 | 2.526670e-51 | -8.615850e-47 |
| Msa0632980 | Msa0898970 | 0.801721 | 7.876866e-49 | -8.615850e-47 |
| Msa0632980 | Msa0921180 | 0.841893 | 3.604244e-58 | -8.615850e-47 |
| Msa0632980 | Msa0946010 | 0.831666 | 1.466891e-55 | -8.615850e-47 |
| Msa0632980 | Msa0959700 | 0.809672 | 1.685542e-50 | -8.615850e-47 |
| Msa0632980 | Msa0987640 | 0.809807 | 1.576639e-50 | -8.615850e-47 |
| Msa0632980 | Msa0998780 | 0.811473 | 6.877790e-51 | -8.615850e-47 |
| Msa0632980 | Msa1018590 | 0.801178 | 1.017720e-48 | -8.615850e-47 |
| Msa0632980 | Msa1022490 | 0.808832 | 2.551121e-50 | -8.615850e-47 |
| Msa0632980 | Msa1022510 | 0.818277 | 2.131586e-52 | -8.615850e-47 |
| Msa0632980 | Msa1048350 | 0.822988 | 1.764585e-53 | -8.615850e-47 |
| Msa0632980 | Msa1106680 | 0.824243 | 8.968828e-54 | -8.615850e-47 |
| Msa0632980 | Msa1148200 | 0.819547 | 1.096604e-52 | -8.615850e-47 |
| Msa0632980 | Msa1148210 | 0.800899 | 1.160691e-48 | -8.615850e-47 |
| Msa0632980 | Msa1181090 | 0.808544 | 2.940298e-50 | -8.615850e-47 |
| Msa0632980 | Msa1231720 | 0.822166 | 2.739737e-53 | -8.615850e-47 |
| Msa0632980 | Msa1236680 | 0.806374 | 8.485751e-50 | -8.615850e-47 |
| Msa0632980 | Msa1253750 | 0.802615 | 5.157601e-49 | -8.615850e-47 |
| Msa0632980 | Msa1294020 | 0.810191 | 1.303214e-50 | -8.615850e-47 |
| Msa0632980 | Msa1319010 | 0.817260 | 3.616297e-52 | -8.615850e-47 |
| Msa0632980 | Msa1383560 | 0.809093 | 2.243288e-50 | -8.615850e-47 |
| Msa0632980 | Msa1411550 | 0.809573 | 1.769610e-50 | -8.615850e-47 |
| Msa0632980 | Msa1429550 | 0.809184 | 2.144562e-50 | -8.615850e-47 |
| Msa0632980 | Msa1430350 | 0.800807 | 1.212046e-48 | -8.615850e-47 |
| Msa0632980 | Msa1445890 | 0.828614 | 8.153580e-55 | -8.615850e-47 |
| Msa0150920 | Msa0632980 | 0.827316 | 1.673796e-54 | -8.615850e-47 |
| Msa0209060 | Msa0632980 | 0.828513 | 8.624824e-55 | -8.615850e-47 |
| Msa0232970 | Msa0632980 | 0.803293 | 3.736238e-49 | -8.615850e-47 |
| Msa0366510 | Msa0632980 | 0.821730 | 3.456258e-53 | -8.615850e-47 |
| Msa0369990 | Msa0632980 | 0.803486 | 3.407078e-49 | -8.615850e-47 |
| Msa0374030 | Msa0632980 | 0.801456 | 8.929445e-49 | -8.615850e-47 |
| Msa0374040 | Msa0632980 | 0.811217 | 7.816808e-51 | -8.615850e-47 |
| Msa0414480 | Msa0632980 | 0.807044 | 6.124424e-50 | -8.615850e-47 |
| Msa0242830 | Msa0632980 | 0.809106 | 2.229134e-50 | -8.615850e-47 |
| Msa0281190 | Msa0632980 | 0.822903 | 1.846971e-53 | -8.615850e-47 |
| Msa0287630 | Msa0632980 | 0.800640 | 1.310716e-48 | -8.615850e-47 |
| Msa0288540 | Msa0632980 | 0.829163 | 6.001158e-55 | -8.615850e-47 |
| Msa0326770 | Msa0632980 | 0.840762 | 7.150548e-58 | -8.615850e-47 |
| Msa0491830 | Msa0632980 | 0.800231 | 1.587942e-48 | -8.615850e-47 |
| Msa0535570 | Msa0632980 | 0.807449 | 5.028514e-50 | -8.615850e-47 |
| Msa0536770 | Msa0632980 | 0.949597 | 9.222987e-108 | -8.615850e-47 |
| Msa0591490 | Msa0632980 | 0.830047 | 3.659486e-55 | -8.615850e-47 |
| Msa0594620 | Msa0632980 | 0.847816 | 9.101435e-60 | -8.615850e-47 |
| Msa0594630 | Msa0632980 | 0.942793 | 3.824258e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632980 | MtrunA17_Chr4g0010991 | 86.713 | 286 | 18 | 1 | 1 | 266 | 44 | 329 | 2.48e-179 | 496 |
| Msa0632980 | MtrunA17_Chr7g0245631 | 46.667 | 285 | 132 | 2 | 1 | 266 | 43 | 326 | 2.69e-87 | 263 |
| Msa0632980 | MtrunA17_Chr7g0245691 | 45.993 | 287 | 132 | 3 | 2 | 266 | 45 | 330 | 2.88e-82 | 250 |
| Msa0632980 | MtrunA17_Chr7g0245741 | 46.154 | 286 | 132 | 3 | 1 | 266 | 43 | 326 | 8.13e-82 | 248 |
| Msa0632980 | MtrunA17_Chr7g0245671 | 44.444 | 288 | 137 | 2 | 1 | 266 | 43 | 329 | 1.73e-79 | 243 |
| Msa0632980 | MtrunA17_Chr7g0245641 | 45.645 | 287 | 134 | 3 | 1 | 266 | 81 | 366 | 4.62e-79 | 243 |
| Msa0632980 | MtrunA17_Chr7g0245711 | 45.455 | 286 | 134 | 3 | 1 | 266 | 5 | 288 | 1.71e-77 | 236 |
| Msa0632980 | MtrunA17_Chr7g0245731 | 45.455 | 286 | 134 | 3 | 1 | 266 | 93 | 376 | 4.65e-76 | 235 |
| Msa0632980 | MtrunA17_Chr1g0155411 | 37.193 | 285 | 157 | 2 | 2 | 266 | 43 | 325 | 2.71e-68 | 214 |
| Msa0632980 | MtrunA17_Chr1g0155431 | 36.842 | 285 | 158 | 2 | 2 | 266 | 43 | 325 | 1.64e-66 | 209 |
| Msa0632980 | MtrunA17_Chr4g0042101 | 32.215 | 298 | 161 | 6 | 6 | 266 | 60 | 353 | 7.71e-42 | 146 |
| Msa0632980 | MtrunA17_Chr4g0048961 | 31.541 | 279 | 159 | 6 | 16 | 265 | 62 | 337 | 7.78e-42 | 146 |
| Msa0632980 | MtrunA17_Chr2g0331211 | 30.345 | 290 | 169 | 7 | 1 | 266 | 39 | 319 | 1.12e-38 | 137 |
| Msa0632980 | MtrunA17_Chr2g0281991 | 29.900 | 301 | 168 | 8 | 4 | 266 | 45 | 340 | 9.98e-33 | 122 |
| Msa0632980 | MtrunA17_Chr4g0002661 | 32.867 | 286 | 154 | 11 | 6 | 266 | 51 | 323 | 5.38e-32 | 120 |
| Msa0632980 | MtrunA17_Chr2g0291541 | 30.928 | 291 | 164 | 14 | 3 | 266 | 46 | 326 | 5.07e-31 | 117 |
| Msa0632980 | MtrunA17_Chr7g0275521 | 29.373 | 303 | 162 | 8 | 7 | 266 | 47 | 340 | 2.08e-30 | 116 |
| Msa0632980 | MtrunA17_Chr5g0423551 | 27.972 | 286 | 176 | 7 | 4 | 266 | 41 | 319 | 5.75e-29 | 112 |
| Msa0632980 | MtrunA17_Chr3g0077231 | 30.736 | 231 | 136 | 4 | 2 | 211 | 41 | 268 | 1.05e-28 | 111 |
| Msa0632980 | MtrunA17_Chr8g0364051 | 31.489 | 235 | 138 | 5 | 2 | 216 | 43 | 274 | 1.85e-27 | 107 |
| Msa0632980 | MtrunA17_Chr3g0106111 | 28.328 | 293 | 161 | 11 | 6 | 266 | 44 | 319 | 5.27e-27 | 106 |
| Msa0632980 | MtrunA17_Chr3g0077221 | 30.172 | 232 | 136 | 7 | 2 | 211 | 45 | 272 | 8.92e-27 | 106 |
| Msa0632980 | MtrunA17_Chr2g0282001 | 27.815 | 302 | 169 | 9 | 4 | 264 | 44 | 337 | 2.17e-26 | 105 |
| Msa0632980 | MtrunA17_Chr4g0001321 | 30.175 | 285 | 164 | 10 | 5 | 266 | 54 | 326 | 3.36e-26 | 104 |
| Msa0632980 | MtrunA17_Chr4g0039321 | 29.851 | 268 | 148 | 11 | 6 | 245 | 48 | 303 | 4.19e-25 | 101 |
| Msa0632980 | MtrunA17_Chr5g0431311 | 29.412 | 289 | 163 | 11 | 6 | 266 | 44 | 319 | 5.61e-25 | 101 |
| Msa0632980 | MtrunA17_Chr8g0363831 | 27.706 | 231 | 144 | 5 | 6 | 216 | 48 | 275 | 6.34e-25 | 101 |
| Msa0632980 | MtrunA17_Chr4g0002961 | 30.769 | 286 | 160 | 9 | 6 | 266 | 51 | 323 | 8.02e-25 | 100 |
| Msa0632980 | MtrunA17_Chr2g0333781 | 29.021 | 286 | 166 | 11 | 5 | 266 | 57 | 329 | 1.40e-24 | 100 |
| Msa0632980 | MtrunA17_Chr2g0282011 | 26.578 | 301 | 174 | 7 | 4 | 264 | 45 | 338 | 1.44e-24 | 100 |
| Msa0632980 | MtrunA17_Chr4g0039311 | 29.412 | 238 | 136 | 6 | 6 | 219 | 50 | 279 | 4.97e-22 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0632980 | AT2G45400.3 | 45.704 | 291 | 131 | 5 | 1 | 266 | 19 | 307 | 8.40e-80 | 243 |
| Msa0632980 | AT2G45400.1 | 45.704 | 291 | 131 | 5 | 1 | 266 | 76 | 364 | 5.28e-79 | 243 |
| Msa0632980 | AT2G45400.2 | 46.667 | 240 | 103 | 4 | 1 | 215 | 76 | 315 | 2.86e-66 | 209 |
| Msa0632980 | AT5G42800.1 | 36.842 | 285 | 158 | 2 | 2 | 266 | 43 | 325 | 1.33e-61 | 199 |
| Msa0632980 | AT2G45400.4 | 55.346 | 159 | 66 | 2 | 1 | 154 | 76 | 234 | 1.25e-52 | 172 |
| Msa0632980 | AT1G61720.1 | 33.333 | 297 | 161 | 7 | 1 | 266 | 47 | 337 | 1.50e-51 | 172 |
| Msa0632980 | AT4G35420.1 | 32.872 | 289 | 162 | 7 | 1 | 266 | 42 | 321 | 9.96e-47 | 159 |
| Msa0632980 | AT2G02400.1 | 29.066 | 289 | 170 | 10 | 3 | 266 | 40 | 318 | 2.41e-32 | 121 |
| Msa0632980 | AT2G33590.1 | 32.353 | 272 | 138 | 9 | 5 | 246 | 46 | 301 | 2.00e-30 | 116 |
| Msa0632980 | AT4G27250.2 | 29.825 | 285 | 161 | 7 | 6 | 257 | 49 | 327 | 2.77e-30 | 116 |
| Msa0632980 | AT4G27250.1 | 29.831 | 295 | 158 | 9 | 6 | 257 | 49 | 337 | 7.10e-30 | 115 |
| Msa0632980 | AT1G68540.1 | 28.276 | 290 | 178 | 8 | 1 | 266 | 38 | 321 | 1.07e-29 | 114 |
| Msa0632980 | AT1G09510.1 | 31.897 | 232 | 134 | 4 | 1 | 211 | 42 | 270 | 6.81e-29 | 112 |
| Msa0632980 | AT1G09480.2 | 29.655 | 290 | 171 | 7 | 1 | 266 | 42 | 322 | 1.53e-28 | 111 |
| Msa0632980 | AT5G19440.1 | 29.861 | 288 | 167 | 9 | 2 | 264 | 45 | 322 | 3.17e-28 | 110 |
| Msa0632980 | AT1G09480.1 | 29.655 | 290 | 171 | 7 | 1 | 266 | 89 | 369 | 3.72e-28 | 110 |
| Msa0632980 | AT1G51410.1 | 31.034 | 232 | 134 | 5 | 6 | 215 | 48 | 275 | 6.17e-28 | 109 |
| Msa0632980 | AT1G25460.1 | 26.621 | 293 | 178 | 7 | 1 | 266 | 37 | 319 | 2.67e-27 | 107 |
| Msa0632980 | AT1G66800.1 | 31.140 | 228 | 135 | 5 | 2 | 211 | 43 | 266 | 4.30e-27 | 107 |
| Msa0632980 | AT1G76470.1 | 33.712 | 264 | 147 | 6 | 6 | 246 | 45 | 303 | 2.65e-26 | 105 |
| Msa0632980 | AT1G09490.2 | 28.966 | 290 | 173 | 8 | 1 | 266 | 11 | 291 | 7.88e-26 | 103 |
| Msa0632980 | AT1G09490.1 | 28.966 | 290 | 173 | 8 | 1 | 266 | 42 | 322 | 1.50e-25 | 103 |
| Msa0632980 | AT5G58490.1 | 29.630 | 297 | 162 | 11 | 1 | 266 | 43 | 323 | 3.90e-25 | 102 |
| Msa0632980 | AT2G33600.1 | 32.453 | 265 | 147 | 8 | 5 | 246 | 46 | 301 | 6.61e-25 | 101 |
| Msa0632980 | AT1G15950.3 | 29.720 | 286 | 164 | 12 | 5 | 266 | 50 | 322 | 8.27e-25 | 101 |
| Msa0632980 | AT1G15950.1 | 29.720 | 286 | 164 | 12 | 5 | 266 | 50 | 322 | 8.27e-25 | 101 |
| Msa0632980 | AT1G80820.1 | 29.474 | 285 | 166 | 11 | 5 | 266 | 45 | 317 | 2.73e-24 | 100 |
| Msa0632980 | AT1G15950.2 | 29.562 | 274 | 157 | 11 | 5 | 254 | 50 | 311 | 1.00e-23 | 98.6 |
| Msa0632980 | AT1G09500.3 | 29.536 | 237 | 142 | 5 | 1 | 215 | 42 | 275 | 2.53e-23 | 96.3 |
| Msa0632980 | AT1G09500.2 | 29.536 | 237 | 142 | 5 | 1 | 215 | 8 | 241 | 3.79e-23 | 96.3 |
| Msa0632980 | AT1G09500.1 | 29.536 | 237 | 142 | 5 | 1 | 215 | 42 | 275 | 5.95e-23 | 96.3 |
| Msa0632980 | AT1G15950.6 | 29.915 | 234 | 131 | 9 | 5 | 215 | 50 | 273 | 1.90e-20 | 88.6 |
| Msa0632980 | AT1G15950.5 | 29.915 | 234 | 131 | 9 | 5 | 215 | 50 | 273 | 2.51e-20 | 88.2 |
| Msa0632980 | AT1G80820.2 | 29.915 | 234 | 131 | 9 | 5 | 215 | 45 | 268 | 2.98e-20 | 87.8 |
| Msa0632980 | AT1G15950.4 | 29.915 | 234 | 131 | 9 | 5 | 215 | 50 | 273 | 2.98e-20 | 88.2 |
| Msa0632980 | AT1G68540.2 | 27.273 | 220 | 131 | 7 | 70 | 266 | 1 | 214 | 6.54e-17 | 77.8 |
| Msa0632980 | AT1G15950.7 | 28.384 | 229 | 131 | 10 | 62 | 266 | 5 | 224 | 1.01e-14 | 72.0 |
Find 37 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTGTTGGATCTTCTTATT+TGG | 0.209176 | 4_3:+17474034 | Msa0632980:CDS |
| TTTGAGTGTGAAAATGTTAA+TGG | 0.229940 | 4_3:+17474656 | Msa0632980:CDS |
| GTTAGCTTCTTTGATGCTTC+TGG | 0.278137 | 4_3:-17473717 | None:intergenic |
| TATGACTGAAAAGAGTGTTT+TGG | 0.313303 | 4_3:+17474067 | Msa0632980:CDS |
| TTGGTTCTTCCTTTGGTTGT+TGG | 0.320036 | 4_3:+17474125 | Msa0632980:CDS |
| TGTTAGTTTGGTTCTTCCTT+TGG | 0.331534 | 4_3:+17474118 | Msa0632980:CDS |
| AACTTACTTTGGTATTGTTA+TGG | 0.339526 | 4_3:-17474756 | None:intergenic |
| TGAATTGAAGGTTGTTAGTT+TGG | 0.347694 | 4_3:+17474106 | Msa0632980:CDS |
| CTTCTCTTTACAGCATTGTA+TGG | 0.353937 | 4_3:-17475926 | None:intergenic |
| TGTAAAAGTAGTAACCTTGT+TGG | 0.375771 | 4_3:+17474020 | Msa0632980:CDS |
| CATCCATTGGGTGTGCTAGA+TGG | 0.400667 | 4_3:-17473809 | None:intergenic |
| TGAGATACTTGTATCTATCT+TGG | 0.401199 | 4_3:-17474580 | None:intergenic |
| TTGCTTTGTCAAAGATATCC+AGG | 0.443021 | 4_3:+17474728 | Msa0632980:CDS |
| CAAAACTACTTGAATCATCA+AGG | 0.450303 | 4_3:-17473755 | None:intergenic |
| AAACCAAGAGCCAGAAGAAA+AGG | 0.479277 | 4_3:+17473836 | Msa0632980:CDS |
| TGGAAAAGTGAATGAATTGA+AGG | 0.484535 | 4_3:+17474094 | Msa0632980:CDS |
| ATGTGGTGGATGAAGATGTT+TGG | 0.490382 | 4_3:+17473982 | Msa0632980:CDS |
| AAAGCAATACAAGGTTGCAT+TGG | 0.515168 | 4_3:+17473780 | Msa0632980:CDS |
| TAAATTTGAACCCAGCATCC+AGG | 0.527299 | 4_3:-17475873 | None:intergenic |
| AGCGTCAAAGATATGTATGA+TGG | 0.533471 | 4_3:+17475901 | Msa0632980:CDS |
| GGTATTGTTATGGTATACCC+TGG | 0.560996 | 4_3:-17474746 | None:intergenic |
| CAGAAATATAAGTGCACGAG+TGG | 0.561375 | 4_3:-17474633 | None:intergenic |
| CATACAATGCTGTAAAGAGA+AGG | 0.570151 | 4_3:+17475927 | Msa0632980:CDS |
| AGAGCAGTGGAAGGAACCCT+AGG | 0.577037 | 4_3:+17473867 | Msa0632980:CDS |
| TTACACTTCTAGTGCAGCAA+CGG | 0.577130 | 4_3:+17473935 | Msa0632980:CDS |
| GTATCTCACCAACTCATACA+TGG | 0.579056 | 4_3:+17474595 | Msa0632980:CDS |
| TTTCCATCTAGCACACCCAA+TGG | 0.583542 | 4_3:+17473806 | Msa0632980:CDS |
| TTGAATCATCAAGGTCAGCA+TGG | 0.593822 | 4_3:-17473746 | None:intergenic |
| ATAAAGGGACCAACAACCAA+AGG | 0.611130 | 4_3:-17474134 | None:intergenic |
| AGTGTGAAAATGTTAATGGA+AGG | 0.611428 | 4_3:+17474660 | Msa0632980:CDS |
| TGCTTTGTCAAAGATATCCA+GGG | 0.611825 | 4_3:+17474729 | Msa0632980:CDS |
| ATACAATGCTGTAAAGAGAA+GGG | 0.620211 | 4_3:+17475928 | Msa0632980:CDS |
| TGATAAGAATCTTGATGTGG+TGG | 0.620407 | 4_3:+17473968 | Msa0632980:CDS |
| ATGAAATGATATTCTGTCTG+AGG | 0.636261 | 4_3:-17474693 | None:intergenic |
| CCAAATAAGAAGATCCAACA+AGG | 0.649216 | 4_3:-17474034 | None:intergenic |
| TGTGTGCACCATGTATGAGT+TGG | 0.669747 | 4_3:-17474603 | None:intergenic |
| CAATGATAAGAATCTTGATG+TGG | 0.698025 | 4_3:+17473965 | Msa0632980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAATTTTTTTTATAGTTTT+TGG | + | chr4_3:17474935-17474954 | Msa0632980:intron | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | chr4_3:17474996-17475015 | Msa0632980:intron | 10.0% |
| !!! | GTTTTTTTTTTTATAGTTTT+TGG | + | chr4_3:17475059-17475078 | Msa0632980:intron | 10.0% |
| !!! | CAAATTTTTTTTATAGTTTT+TGG | + | chr4_3:17474935-17474954 | Msa0632980:intron | 10.0% |
| !!! | CAATTTTTTTTTATAGTTTT+TGG | + | chr4_3:17474996-17475015 | Msa0632980:intron | 10.0% |
| !!! | GTTTTTTTTTTTATAGTTTT+TGG | + | chr4_3:17475059-17475078 | Msa0632980:intron | 10.0% |
| !!! | ATATACATTTTTTTTACCTA+AGG | + | chr4_3:17474238-17474257 | Msa0632980:intron | 15.0% |
| !!! | ATATTTTTTTGTGTGTAAAT+CGG | - | chr4_3:17474356-17474375 | None:intergenic | 15.0% |
| !! | TAGGCAAAATATTATTAAAT+AGG | + | chr4_3:17474424-17474443 | Msa0632980:intron | 15.0% |
| !! | AGGCAAAATATTATTAAATA+GGG | + | chr4_3:17474425-17474444 | Msa0632980:intron | 15.0% |
| !! | TATATCTCAAATATTAGAAT+TGG | - | chr4_3:17474498-17474517 | None:intergenic | 15.0% |
| !! | AAAAAATATGAAACTTACTT+TGG | - | chr4_3:17474770-17474789 | None:intergenic | 15.0% |
| !! | CAATGACTTAATTAATATAT+AGG | + | chr4_3:17474858-17474877 | Msa0632980:intron | 15.0% |
| !! | TTAATATATAGGCTAAAATA+TGG | + | chr4_3:17474869-17474888 | Msa0632980:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | - | chr4_3:17474933-17474952 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | - | chr4_3:17474934-17474953 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr4_3:17474994-17475013 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr4_3:17474995-17475014 | None:intergenic | 15.0% |
| !!! | TGCAATTTTTTTATAGTTTT+TGG | - | chr4_3:17475346-17475365 | None:intergenic | 15.0% |
| !! | AAAAACTATAAAAAAATTGC+AGG | + | chr4_3:17475345-17475364 | Msa0632980:intron | 15.0% |
| !! | AAAACTATAAAAAAATTGCA+GGG | + | chr4_3:17475346-17475365 | Msa0632980:intron | 15.0% |
| !!! | GCAATTTTTTTTATAGTTTT+TGG | - | chr4_3:17475405-17475424 | None:intergenic | 15.0% |
| !! | AAAACTATAAAAAAAATTGC+AGG | + | chr4_3:17475405-17475424 | Msa0632980:intron | 15.0% |
| !! | AAACTATAAAAAAAATTGCA+GGG | + | chr4_3:17475406-17475425 | Msa0632980:intron | 15.0% |
| !! | ATATATATTAGGCTAAAATA+TGG | - | chr4_3:17475470-17475489 | None:intergenic | 15.0% |
| !! | TTAGTCATATCATATATATT+AGG | - | chr4_3:17475481-17475500 | None:intergenic | 15.0% |
| !! | AAATCTAAATAATGTATCTT+TGG | - | chr4_3:17475706-17475725 | None:intergenic | 15.0% |
| !!! | ATATACATTTTTTTTACCTA+AGG | + | chr4_3:17474238-17474257 | Msa0632980:intron | 15.0% |
| !!! | ATATTTTTTTGTGTGTAAAT+CGG | - | chr4_3:17474356-17474375 | None:intergenic | 15.0% |
| !! | TAGGCAAAATATTATTAAAT+AGG | + | chr4_3:17474424-17474443 | Msa0632980:intron | 15.0% |
| !! | AGGCAAAATATTATTAAATA+GGG | + | chr4_3:17474425-17474444 | Msa0632980:intron | 15.0% |
| !! | TATATCTCAAATATTAGAAT+TGG | - | chr4_3:17474498-17474517 | None:intergenic | 15.0% |
| !! | AAAAAATATGAAACTTACTT+TGG | - | chr4_3:17474770-17474789 | None:intergenic | 15.0% |
| !! | CAATGACTTAATTAATATAT+AGG | + | chr4_3:17474858-17474877 | Msa0632980:intron | 15.0% |
| !! | TTAATATATAGGCTAAAATA+TGG | + | chr4_3:17474869-17474888 | Msa0632980:intron | 15.0% |
| !! | AACTATAAAAAAAATTTGCA+GGG | - | chr4_3:17474933-17474952 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAATTTGC+AGG | - | chr4_3:17474934-17474953 | None:intergenic | 15.0% |
| !! | AACTATAAAAAAAAATTGCA+GGG | - | chr4_3:17474994-17475013 | None:intergenic | 15.0% |
| !! | AAACTATAAAAAAAAATTGC+AGG | - | chr4_3:17474995-17475014 | None:intergenic | 15.0% |
| !!! | TGCAATTTTTTTATAGTTTT+TGG | - | chr4_3:17475346-17475365 | None:intergenic | 15.0% |
| !! | AAAAACTATAAAAAAATTGC+AGG | + | chr4_3:17475345-17475364 | Msa0632980:intron | 15.0% |
| !! | AAAACTATAAAAAAATTGCA+GGG | + | chr4_3:17475346-17475365 | Msa0632980:intron | 15.0% |
| !!! | GCAATTTTTTTTATAGTTTT+TGG | - | chr4_3:17475405-17475424 | None:intergenic | 15.0% |
| !! | AAAACTATAAAAAAAATTGC+AGG | + | chr4_3:17475405-17475424 | Msa0632980:intron | 15.0% |
| !! | AAACTATAAAAAAAATTGCA+GGG | + | chr4_3:17475406-17475425 | Msa0632980:intron | 15.0% |
| !! | ATATATATTAGGCTAAAATA+TGG | - | chr4_3:17475470-17475489 | None:intergenic | 15.0% |
| !! | TTAGTCATATCATATATATT+AGG | - | chr4_3:17475481-17475500 | None:intergenic | 15.0% |
| !! | AAATCTAAATAATGTATCTT+TGG | - | chr4_3:17475706-17475725 | None:intergenic | 15.0% |
| !!! | TATTTTTTTGTGTGTAAATC+GGG | - | chr4_3:17474355-17474374 | None:intergenic | 20.0% |
| !! | GGCAAAATATTATTAAATAG+GGG | + | chr4_3:17474426-17474445 | Msa0632980:intron | 20.0% |
| !!! | TTTTTTACTAATTTAGACCA+TGG | + | chr4_3:17474791-17474810 | Msa0632980:intron | 20.0% |
| !! | CTATAAAAAAAAAAACTGCA+GGG | - | chr4_3:17475055-17475074 | None:intergenic | 20.0% |
| !! | ACTATAAAAAAAAAAACTGC+AGG | - | chr4_3:17475056-17475075 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | - | chr4_3:17475319-17475338 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | + | chr4_3:17475319-17475338 | Msa0632980:intron | 20.0% |
| !!! | CGTAGTTTTTAACAAAATTA+TGG | + | chr4_3:17475654-17475673 | Msa0632980:intron | 20.0% |
| !!! | AGTTTTTAACAAAATTATGG+TGG | + | chr4_3:17475657-17475676 | Msa0632980:intron | 20.0% |
| !! | AAAATAATCACCCAAAAATT+AGG | - | chr4_3:17475792-17475811 | None:intergenic | 20.0% |
| !!! | TATTTTTTTGTGTGTAAATC+GGG | - | chr4_3:17474355-17474374 | None:intergenic | 20.0% |
| !! | GGCAAAATATTATTAAATAG+GGG | + | chr4_3:17474426-17474445 | Msa0632980:intron | 20.0% |
| !!! | TTTTTTACTAATTTAGACCA+TGG | + | chr4_3:17474791-17474810 | Msa0632980:intron | 20.0% |
| !! | CTATAAAAAAAAAAACTGCA+GGG | - | chr4_3:17475055-17475074 | None:intergenic | 20.0% |
| !! | ACTATAAAAAAAAAAACTGC+AGG | - | chr4_3:17475056-17475075 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | - | chr4_3:17475319-17475338 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAAATTTTTGCA+GGG | + | chr4_3:17475319-17475338 | Msa0632980:intron | 20.0% |
| !!! | CGTAGTTTTTAACAAAATTA+TGG | + | chr4_3:17475654-17475673 | Msa0632980:intron | 20.0% |
| !!! | AGTTTTTAACAAAATTATGG+TGG | + | chr4_3:17475657-17475676 | Msa0632980:intron | 20.0% |
| !! | AAAATAATCACCCAAAAATT+AGG | - | chr4_3:17475792-17475811 | None:intergenic | 20.0% |
| !!! | AGTTTTGAAAAAGCAATACA+AGG | + | chr4_3:17473771-17473790 | Msa0632980:CDS | 25.0% |
| !! | ACATGTTTTCAAAATTCCTA+GGG | - | chr4_3:17473886-17473905 | None:intergenic | 25.0% |
| !! | AACATGTTTTCAAAATTCCT+AGG | - | chr4_3:17473887-17473906 | None:intergenic | 25.0% |
| !!! | AGGAATTTTGAAAACATGTT+TGG | + | chr4_3:17473887-17473906 | Msa0632980:CDS | 25.0% |
| !! | AAACAGATGAAGGTATATTA+GGG | - | chr4_3:17474163-17474182 | None:intergenic | 25.0% |
| !! | TAAACAGATGAAGGTATATT+AGG | - | chr4_3:17474164-17474183 | None:intergenic | 25.0% |
| !!! | TATCCTTTGCTATAAGTTTT+AGG | - | chr4_3:17474462-17474481 | None:intergenic | 25.0% |
| ! | ATATGTGCTATGTTTATTAC+AGG | + | chr4_3:17474554-17474573 | Msa0632980:intron | 25.0% |
| ! | TTTGAGTGTGAAAATGTTAA+TGG | + | chr4_3:17474656-17474675 | Msa0632980:CDS | 25.0% |
| ! | AACTTACTTTGGTATTGTTA+TGG | - | chr4_3:17474759-17474778 | None:intergenic | 25.0% |
| !!! | AGTCTACACAATGTATTTTT+TGG | + | chr4_3:17474835-17474854 | Msa0632980:intron | 25.0% |
| ! | TATAGGCTAAAATATGGTAT+TGG | + | chr4_3:17474875-17474894 | Msa0632980:intron | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | - | chr4_3:17475318-17475337 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | + | chr4_3:17475084-17475103 | Msa0632980:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | - | chr4_3:17475124-17475143 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | - | chr4_3:17475084-17475103 | None:intergenic | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | + | chr4_3:17475318-17475337 | Msa0632980:intron | 25.0% |
| ! | ATTAGGCTAAAATATGGTAT+TGG | - | chr4_3:17475464-17475483 | None:intergenic | 25.0% |
| ! | TAATGTATCTTTGGTTAGAT+TGG | - | chr4_3:17475697-17475716 | None:intergenic | 25.0% |
| ! | AGTTCAATGAAGACAAAAAA+TGG | + | chr4_3:17475814-17475833 | Msa0632980:intron | 25.0% |
| !!! | AGTTTTGAAAAAGCAATACA+AGG | + | chr4_3:17473771-17473790 | Msa0632980:CDS | 25.0% |
| !! | ACATGTTTTCAAAATTCCTA+GGG | - | chr4_3:17473886-17473905 | None:intergenic | 25.0% |
| !! | AACATGTTTTCAAAATTCCT+AGG | - | chr4_3:17473887-17473906 | None:intergenic | 25.0% |
| !!! | AGGAATTTTGAAAACATGTT+TGG | + | chr4_3:17473887-17473906 | Msa0632980:CDS | 25.0% |
| !! | AAACAGATGAAGGTATATTA+GGG | - | chr4_3:17474163-17474182 | None:intergenic | 25.0% |
| !! | TAAACAGATGAAGGTATATT+AGG | - | chr4_3:17474164-17474183 | None:intergenic | 25.0% |
| !!! | TATCCTTTGCTATAAGTTTT+AGG | - | chr4_3:17474462-17474481 | None:intergenic | 25.0% |
| ! | ATATGTGCTATGTTTATTAC+AGG | + | chr4_3:17474554-17474573 | Msa0632980:intron | 25.0% |
| ! | TTTGAGTGTGAAAATGTTAA+TGG | + | chr4_3:17474656-17474675 | Msa0632980:CDS | 25.0% |
| ! | AACTTACTTTGGTATTGTTA+TGG | - | chr4_3:17474759-17474778 | None:intergenic | 25.0% |
| !!! | AGTCTACACAATGTATTTTT+TGG | + | chr4_3:17474835-17474854 | Msa0632980:intron | 25.0% |
| ! | TATAGGCTAAAATATGGTAT+TGG | + | chr4_3:17474875-17474894 | Msa0632980:intron | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | - | chr4_3:17475318-17475337 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | + | chr4_3:17475084-17475103 | Msa0632980:intron | 25.0% |
| ! | TGACAAATCATCACATAATT+GGG | - | chr4_3:17475124-17475143 | None:intergenic | 25.0% |
| !!! | CCTGCAAAAATTTTTGTTTT+TGG | - | chr4_3:17475084-17475103 | None:intergenic | 25.0% |
| !! | CCAAAAACAAAAATTTTTGC+AGG | + | chr4_3:17475318-17475337 | Msa0632980:intron | 25.0% |
| ! | ATTAGGCTAAAATATGGTAT+TGG | - | chr4_3:17475464-17475483 | None:intergenic | 25.0% |
| ! | TAATGTATCTTTGGTTAGAT+TGG | - | chr4_3:17475697-17475716 | None:intergenic | 25.0% |
| ! | AGTTCAATGAAGACAAAAAA+TGG | + | chr4_3:17475814-17475833 | Msa0632980:intron | 25.0% |
| CAAAACTACTTGAATCATCA+AGG | - | chr4_3:17473758-17473777 | None:intergenic | 30.0% | |
| ATCAAAGACAGTGAAAAAAG+TGG | + | chr4_3:17473911-17473930 | Msa0632980:CDS | 30.0% | |
| CAATGATAAGAATCTTGATG+TGG | + | chr4_3:17473965-17473984 | Msa0632980:CDS | 30.0% | |
| TGTAAAAGTAGTAACCTTGT+TGG | + | chr4_3:17474020-17474039 | Msa0632980:CDS | 30.0% | |
| !!! | TATGACTGAAAAGAGTGTTT+TGG | + | chr4_3:17474067-17474086 | Msa0632980:CDS | 30.0% |
| TGGAAAAGTGAATGAATTGA+AGG | + | chr4_3:17474094-17474113 | Msa0632980:CDS | 30.0% | |
| TGAATTGAAGGTTGTTAGTT+TGG | + | chr4_3:17474106-17474125 | Msa0632980:CDS | 30.0% | |
| GGTATATTAGGGCAAATAAA+GGG | - | chr4_3:17474152-17474171 | None:intergenic | 30.0% | |
| AGGTATATTAGGGCAAATAA+AGG | - | chr4_3:17474153-17474172 | None:intergenic | 30.0% | |
| AGTGCTATATAAACAGATGA+AGG | - | chr4_3:17474173-17474192 | None:intergenic | 30.0% | |
| GAAATACATACCAAAGATCA+TGG | - | chr4_3:17474198-17474217 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTACCTAAGGTCCT+AGG | + | chr4_3:17474245-17474264 | Msa0632980:intron | 30.0% |
| GTTCCTAAAACTTATAGCAA+AGG | + | chr4_3:17474456-17474475 | Msa0632980:intron | 30.0% | |
| TGAGATACTTGTATCTATCT+TGG | - | chr4_3:17474583-17474602 | None:intergenic | 30.0% | |
| AGTGTGAAAATGTTAATGGA+AGG | + | chr4_3:17474660-17474679 | Msa0632980:CDS | 30.0% | |
| ATGAAATGATATTCTGTCTG+AGG | - | chr4_3:17474696-17474715 | None:intergenic | 30.0% | |
| CATTGTGTAGACTAATTTGA+CGG | - | chr4_3:17474828-17474847 | None:intergenic | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr4_3:17475378-17475397 | None:intergenic | 30.0% |
| GACAAATCATCACATAATTG+GGG | - | chr4_3:17475123-17475142 | None:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | - | chr4_3:17475125-17475144 | None:intergenic | 30.0% | |
| TGACAAATCATCACATAACT+GGG | + | chr4_3:17475281-17475300 | Msa0632980:intron | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | + | chr4_3:17475378-17475397 | Msa0632980:intron | 30.0% |
| ! | ATCATAGAACGTTTTCAACT+TGG | - | chr4_3:17475552-17475571 | None:intergenic | 30.0% |
| ! | AAAAAGCCTAGCCTAATTTT+TGG | + | chr4_3:17475778-17475797 | Msa0632980:intron | 30.0% |
| ! | AAAAGCCTAGCCTAATTTTT+GGG | + | chr4_3:17475779-17475798 | Msa0632980:intron | 30.0% |
| ATACAATGCTGTAAAGAGAA+GGG | + | chr4_3:17475928-17475947 | Msa0632980:CDS | 30.0% | |
| CAAAACTACTTGAATCATCA+AGG | - | chr4_3:17473758-17473777 | None:intergenic | 30.0% | |
| ATCAAAGACAGTGAAAAAAG+TGG | + | chr4_3:17473911-17473930 | Msa0632980:CDS | 30.0% | |
| CAATGATAAGAATCTTGATG+TGG | + | chr4_3:17473965-17473984 | Msa0632980:CDS | 30.0% | |
| TGTAAAAGTAGTAACCTTGT+TGG | + | chr4_3:17474020-17474039 | Msa0632980:CDS | 30.0% | |
| !!! | TATGACTGAAAAGAGTGTTT+TGG | + | chr4_3:17474067-17474086 | Msa0632980:CDS | 30.0% |
| TGGAAAAGTGAATGAATTGA+AGG | + | chr4_3:17474094-17474113 | Msa0632980:CDS | 30.0% | |
| TGAATTGAAGGTTGTTAGTT+TGG | + | chr4_3:17474106-17474125 | Msa0632980:CDS | 30.0% | |
| GGTATATTAGGGCAAATAAA+GGG | - | chr4_3:17474152-17474171 | None:intergenic | 30.0% | |
| AGGTATATTAGGGCAAATAA+AGG | - | chr4_3:17474153-17474172 | None:intergenic | 30.0% | |
| AGTGCTATATAAACAGATGA+AGG | - | chr4_3:17474173-17474192 | None:intergenic | 30.0% | |
| GAAATACATACCAAAGATCA+TGG | - | chr4_3:17474198-17474217 | None:intergenic | 30.0% | |
| !!! | TTTTTTTTACCTAAGGTCCT+AGG | + | chr4_3:17474245-17474264 | Msa0632980:intron | 30.0% |
| GTTCCTAAAACTTATAGCAA+AGG | + | chr4_3:17474456-17474475 | Msa0632980:intron | 30.0% | |
| TGAGATACTTGTATCTATCT+TGG | - | chr4_3:17474583-17474602 | None:intergenic | 30.0% | |
| AGTGTGAAAATGTTAATGGA+AGG | + | chr4_3:17474660-17474679 | Msa0632980:CDS | 30.0% | |
| ATGAAATGATATTCTGTCTG+AGG | - | chr4_3:17474696-17474715 | None:intergenic | 30.0% | |
| CATTGTGTAGACTAATTTGA+CGG | - | chr4_3:17474828-17474847 | None:intergenic | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | - | chr4_3:17475378-17475397 | None:intergenic | 30.0% |
| GACAAATCATCACATAATTG+GGG | - | chr4_3:17475123-17475142 | None:intergenic | 30.0% | |
| GTGACAAATCATCACATAAT+TGG | - | chr4_3:17475125-17475144 | None:intergenic | 30.0% | |
| TGACAAATCATCACATAACT+GGG | + | chr4_3:17475281-17475300 | Msa0632980:intron | 30.0% | |
| !!! | AAAACTGACCTATTTTTGCA+GGG | + | chr4_3:17475378-17475397 | Msa0632980:intron | 30.0% |
| ! | ATCATAGAACGTTTTCAACT+TGG | - | chr4_3:17475552-17475571 | None:intergenic | 30.0% |
| ! | AAAAAGCCTAGCCTAATTTT+TGG | + | chr4_3:17475778-17475797 | Msa0632980:intron | 30.0% |
| ! | AAAAGCCTAGCCTAATTTTT+GGG | + | chr4_3:17475779-17475798 | Msa0632980:intron | 30.0% |
| ATACAATGCTGTAAAGAGAA+GGG | + | chr4_3:17475928-17475947 | Msa0632980:CDS | 30.0% | |
| AAAGCAATACAAGGTTGCAT+TGG | + | chr4_3:17473780-17473799 | Msa0632980:CDS | 35.0% | |
| ! | CTTTTTGTCACCTTTTCTTC+TGG | - | chr4_3:17473849-17473868 | None:intergenic | 35.0% |
| TGATAAGAATCTTGATGTGG+TGG | + | chr4_3:17473968-17473987 | Msa0632980:CDS | 35.0% | |
| CCAAATAAGAAGATCCAACA+AGG | - | chr4_3:17474037-17474056 | None:intergenic | 35.0% | |
| CCTTGTTGGATCTTCTTATT+TGG | + | chr4_3:17474034-17474053 | Msa0632980:CDS | 35.0% | |
| !!! | GAAAAGAGTGTTTTGGAGTT+TGG | + | chr4_3:17474074-17474093 | Msa0632980:CDS | 35.0% |
| !! | TGTTAGTTTGGTTCTTCCTT+TGG | + | chr4_3:17474118-17474137 | Msa0632980:CDS | 35.0% |
| !! | ACAAGAGCGTTAAAACTCTT+CGG | + | chr4_3:17474289-17474308 | Msa0632980:intron | 35.0% |
| GAAGAGTTTGTCATCCATTT+GGG | + | chr4_3:17474311-17474330 | Msa0632980:intron | 35.0% | |
| TTGCTTTGTCAAAGATATCC+AGG | + | chr4_3:17474728-17474747 | Msa0632980:CDS | 35.0% | |
| TGCTTTGTCAAAGATATCCA+GGG | + | chr4_3:17474729-17474748 | Msa0632980:CDS | 35.0% | |
| ! | CAAAACTGTCCTATTTTGCA+GGG | - | chr4_3:17474902-17474921 | None:intergenic | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | + | chr4_3:17475012-17475031 | Msa0632980:intron | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr4_3:17475377-17475396 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr4_3:17475022-17475041 | Msa0632980:intron | 35.0% |
| !!! | TTGTCACTTTTGTGCATATG+TGG | + | chr4_3:17475138-17475157 | Msa0632980:intron | 35.0% |
| GTGACAAATCATCACATAAC+TGG | + | chr4_3:17475280-17475299 | Msa0632980:intron | 35.0% | |
| GACAAATCATCACATAACTG+GGG | + | chr4_3:17475282-17475301 | Msa0632980:intron | 35.0% | |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | - | chr4_3:17475022-17475041 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | + | chr4_3:17475377-17475396 | Msa0632980:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr4_3:17475012-17475031 | None:intergenic | 35.0% |
| TGACTTCGACAAAATCATAG+TGG | + | chr4_3:17475604-17475623 | Msa0632980:intron | 35.0% | |
| AATCACCCAAAAATTAGGCT+AGG | - | chr4_3:17475787-17475806 | None:intergenic | 35.0% | |
| TCTATCATCAAAAAAGCTCC+TGG | + | chr4_3:17475855-17475874 | Msa0632980:CDS | 35.0% | |
| AGCGTCAAAGATATGTATGA+TGG | + | chr4_3:17475901-17475920 | Msa0632980:CDS | 35.0% | |
| CTTCTCTTTACAGCATTGTA+TGG | - | chr4_3:17475929-17475948 | None:intergenic | 35.0% | |
| CATACAATGCTGTAAAGAGA+AGG | + | chr4_3:17475927-17475946 | Msa0632980:CDS | 35.0% | |
| AAAGCAATACAAGGTTGCAT+TGG | + | chr4_3:17473780-17473799 | Msa0632980:CDS | 35.0% | |
| ! | CTTTTTGTCACCTTTTCTTC+TGG | - | chr4_3:17473849-17473868 | None:intergenic | 35.0% |
| TGATAAGAATCTTGATGTGG+TGG | + | chr4_3:17473968-17473987 | Msa0632980:CDS | 35.0% | |
| CCAAATAAGAAGATCCAACA+AGG | - | chr4_3:17474037-17474056 | None:intergenic | 35.0% | |
| CCTTGTTGGATCTTCTTATT+TGG | + | chr4_3:17474034-17474053 | Msa0632980:CDS | 35.0% | |
| !!! | GAAAAGAGTGTTTTGGAGTT+TGG | + | chr4_3:17474074-17474093 | Msa0632980:CDS | 35.0% |
| !! | TGTTAGTTTGGTTCTTCCTT+TGG | + | chr4_3:17474118-17474137 | Msa0632980:CDS | 35.0% |
| !! | ACAAGAGCGTTAAAACTCTT+CGG | + | chr4_3:17474289-17474308 | Msa0632980:intron | 35.0% |
| GAAGAGTTTGTCATCCATTT+GGG | + | chr4_3:17474311-17474330 | Msa0632980:intron | 35.0% | |
| TTGCTTTGTCAAAGATATCC+AGG | + | chr4_3:17474728-17474747 | Msa0632980:CDS | 35.0% | |
| TGCTTTGTCAAAGATATCCA+GGG | + | chr4_3:17474729-17474748 | Msa0632980:CDS | 35.0% | |
| ! | CAAAACTGTCCTATTTTGCA+GGG | - | chr4_3:17474902-17474921 | None:intergenic | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | + | chr4_3:17475012-17475031 | Msa0632980:intron | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | - | chr4_3:17475377-17475396 | None:intergenic | 35.0% |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | + | chr4_3:17475022-17475041 | Msa0632980:intron | 35.0% |
| !!! | TTGTCACTTTTGTGCATATG+TGG | + | chr4_3:17475138-17475157 | Msa0632980:intron | 35.0% |
| GTGACAAATCATCACATAAC+TGG | + | chr4_3:17475280-17475299 | Msa0632980:intron | 35.0% | |
| GACAAATCATCACATAACTG+GGG | + | chr4_3:17475282-17475301 | Msa0632980:intron | 35.0% | |
| ! | CTGCAAAAATAGGTCAGTTT+TGG | - | chr4_3:17475022-17475041 | None:intergenic | 35.0% |
| !!! | CAAAACTGACCTATTTTTGC+AGG | + | chr4_3:17475377-17475396 | Msa0632980:intron | 35.0% |
| !! | TTTTTGGTCCCTGCAAAAAT+AGG | - | chr4_3:17475012-17475031 | None:intergenic | 35.0% |
| TGACTTCGACAAAATCATAG+TGG | + | chr4_3:17475604-17475623 | Msa0632980:intron | 35.0% | |
| AATCACCCAAAAATTAGGCT+AGG | - | chr4_3:17475787-17475806 | None:intergenic | 35.0% | |
| TCTATCATCAAAAAAGCTCC+TGG | + | chr4_3:17475855-17475874 | Msa0632980:CDS | 35.0% | |
| AGCGTCAAAGATATGTATGA+TGG | + | chr4_3:17475901-17475920 | Msa0632980:CDS | 35.0% | |
| CTTCTCTTTACAGCATTGTA+TGG | - | chr4_3:17475929-17475948 | None:intergenic | 35.0% | |
| CATACAATGCTGTAAAGAGA+AGG | + | chr4_3:17475927-17475946 | Msa0632980:CDS | 35.0% | |
| ! | GTTAGCTTCTTTGATGCTTC+TGG | - | chr4_3:17473720-17473739 | None:intergenic | 40.0% |
| TTGAATCATCAAGGTCAGCA+TGG | - | chr4_3:17473749-17473768 | None:intergenic | 40.0% | |
| !!! | CTTGGTTTTGCACATCCATT+GGG | - | chr4_3:17473824-17473843 | None:intergenic | 40.0% |
| !!! | TCTTGGTTTTGCACATCCAT+TGG | - | chr4_3:17473825-17473844 | None:intergenic | 40.0% |
| AAACCAAGAGCCAGAAGAAA+AGG | + | chr4_3:17473836-17473855 | Msa0632980:CDS | 40.0% | |
| AAAGGTGACAAAAAGAGCAG+TGG | + | chr4_3:17473854-17473873 | Msa0632980:CDS | 40.0% | |
| TTACACTTCTAGTGCAGCAA+CGG | + | chr4_3:17473935-17473954 | Msa0632980:CDS | 40.0% | |
| !! | ATGTGGTGGATGAAGATGTT+TGG | + | chr4_3:17473982-17474001 | Msa0632980:CDS | 40.0% |
| ! | TTGGTTCTTCCTTTGGTTGT+TGG | + | chr4_3:17474125-17474144 | Msa0632980:CDS | 40.0% |
| ATAAAGGGACCAACAACCAA+AGG | - | chr4_3:17474137-17474156 | None:intergenic | 40.0% | |
| GGAAGAGTTTGTCATCCATT+TGG | + | chr4_3:17474310-17474329 | Msa0632980:intron | 40.0% | |
| GTATCTCACCAACTCATACA+TGG | + | chr4_3:17474595-17474614 | Msa0632980:CDS | 40.0% | |
| CAGAAATATAAGTGCACGAG+TGG | - | chr4_3:17474636-17474655 | None:intergenic | 40.0% | |
| GGTATTGTTATGGTATACCC+TGG | - | chr4_3:17474749-17474768 | None:intergenic | 40.0% | |
| TGACGGAGTTTACAATTCCA+TGG | - | chr4_3:17474811-17474830 | None:intergenic | 40.0% | |
| ! | CCAAAACTGTCCTATTTTGC+AGG | - | chr4_3:17474903-17474922 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGGACAGTTT+TGG | + | chr4_3:17474900-17474919 | Msa0632980:intron | 40.0% |
| !! | TTTTTGGTCCCTGCAAATAC+AGG | + | chr4_3:17474951-17474970 | Msa0632980:intron | 40.0% |
| ! | AAAACTGGCCTGTATTTGCA+GGG | - | chr4_3:17474962-17474981 | None:intergenic | 40.0% |
| ! | TAAAACTGGCCTGTATTTGC+AGG | - | chr4_3:17474963-17474982 | None:intergenic | 40.0% |
| GCAGGGACTAAAACTAAAAC+TGG | - | chr4_3:17474977-17474996 | None:intergenic | 40.0% | |
| TCATCACATAATTGGGGTCA+TGG | - | chr4_3:17475117-17475136 | None:intergenic | 40.0% | |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | chr4_3:17475437-17475456 | Msa0632980:intron | 40.0% |
| TAAATTTGAACCCAGCATCC+AGG | - | chr4_3:17475876-17475895 | None:intergenic | 40.0% | |
| ! | GTTAGCTTCTTTGATGCTTC+TGG | - | chr4_3:17473720-17473739 | None:intergenic | 40.0% |
| TTGAATCATCAAGGTCAGCA+TGG | - | chr4_3:17473749-17473768 | None:intergenic | 40.0% | |
| !!! | CTTGGTTTTGCACATCCATT+GGG | - | chr4_3:17473824-17473843 | None:intergenic | 40.0% |
| !!! | TCTTGGTTTTGCACATCCAT+TGG | - | chr4_3:17473825-17473844 | None:intergenic | 40.0% |
| AAACCAAGAGCCAGAAGAAA+AGG | + | chr4_3:17473836-17473855 | Msa0632980:CDS | 40.0% | |
| AAAGGTGACAAAAAGAGCAG+TGG | + | chr4_3:17473854-17473873 | Msa0632980:CDS | 40.0% | |
| TTACACTTCTAGTGCAGCAA+CGG | + | chr4_3:17473935-17473954 | Msa0632980:CDS | 40.0% | |
| !! | ATGTGGTGGATGAAGATGTT+TGG | + | chr4_3:17473982-17474001 | Msa0632980:CDS | 40.0% |
| ! | TTGGTTCTTCCTTTGGTTGT+TGG | + | chr4_3:17474125-17474144 | Msa0632980:CDS | 40.0% |
| ATAAAGGGACCAACAACCAA+AGG | - | chr4_3:17474137-17474156 | None:intergenic | 40.0% | |
| GGAAGAGTTTGTCATCCATT+TGG | + | chr4_3:17474310-17474329 | Msa0632980:intron | 40.0% | |
| GTATCTCACCAACTCATACA+TGG | + | chr4_3:17474595-17474614 | Msa0632980:CDS | 40.0% | |
| CAGAAATATAAGTGCACGAG+TGG | - | chr4_3:17474636-17474655 | None:intergenic | 40.0% | |
| GGTATTGTTATGGTATACCC+TGG | - | chr4_3:17474749-17474768 | None:intergenic | 40.0% | |
| TGACGGAGTTTACAATTCCA+TGG | - | chr4_3:17474811-17474830 | None:intergenic | 40.0% | |
| ! | CCAAAACTGTCCTATTTTGC+AGG | - | chr4_3:17474903-17474922 | None:intergenic | 40.0% |
| ! | CCTGCAAAATAGGACAGTTT+TGG | + | chr4_3:17474900-17474919 | Msa0632980:intron | 40.0% |
| !! | TTTTTGGTCCCTGCAAATAC+AGG | + | chr4_3:17474951-17474970 | Msa0632980:intron | 40.0% |
| ! | AAAACTGGCCTGTATTTGCA+GGG | - | chr4_3:17474962-17474981 | None:intergenic | 40.0% |
| ! | TAAAACTGGCCTGTATTTGC+AGG | - | chr4_3:17474963-17474982 | None:intergenic | 40.0% |
| GCAGGGACTAAAACTAAAAC+TGG | - | chr4_3:17474977-17474996 | None:intergenic | 40.0% | |
| TCATCACATAATTGGGGTCA+TGG | - | chr4_3:17475117-17475136 | None:intergenic | 40.0% | |
| !! | CAAAACTGGCCTATTTTGCA+GGG | + | chr4_3:17475437-17475456 | Msa0632980:intron | 40.0% |
| TAAATTTGAACCCAGCATCC+AGG | - | chr4_3:17475876-17475895 | None:intergenic | 40.0% | |
| TTTCCATCTAGCACACCCAA+TGG | + | chr4_3:17473806-17473825 | Msa0632980:CDS | 45.0% | |
| !!! | TCACCTTTTCTTCTGGCTCT+TGG | - | chr4_3:17473842-17473861 | None:intergenic | 45.0% |
| GTGACAAAAAGAGCAGTGGA+AGG | + | chr4_3:17473858-17473877 | Msa0632980:CDS | 45.0% | |
| ATAGCACTCGCCATGATCTT+TGG | + | chr4_3:17474185-17474204 | Msa0632980:intron | 45.0% | |
| TCAAGACTAGGTTCGAACCT+AGG | - | chr4_3:17474265-17474284 | None:intergenic | 45.0% | |
| GCTCTTGTATGCTCAAGACT+AGG | - | chr4_3:17474277-17474296 | None:intergenic | 45.0% | |
| TGTGTGCACCATGTATGAGT+TGG | - | chr4_3:17474606-17474625 | None:intergenic | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr4_3:17474890-17474909 | Msa0632980:intron | 45.0% |
| ATCATCACATAACTGGGGTC+AGG | + | chr4_3:17475287-17475306 | Msa0632980:intron | 45.0% | |
| TCATCACATAACTGGGGTCA+GGG | + | chr4_3:17475288-17475307 | Msa0632980:intron | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr4_3:17475363-17475382 | Msa0632980:intron | 45.0% | |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | chr4_3:17475439-17475458 | None:intergenic | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | chr4_3:17475436-17475455 | Msa0632980:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr4_3:17474890-17474909 | None:intergenic | 45.0% |
| TCAAAAAAGCTCCTGGATGC+TGG | + | chr4_3:17475862-17475881 | Msa0632980:CDS | 45.0% | |
| CAAAAAAGCTCCTGGATGCT+GGG | + | chr4_3:17475863-17475882 | Msa0632980:CDS | 45.0% | |
| TTTCCATCTAGCACACCCAA+TGG | + | chr4_3:17473806-17473825 | Msa0632980:CDS | 45.0% | |
| !!! | TCACCTTTTCTTCTGGCTCT+TGG | - | chr4_3:17473842-17473861 | None:intergenic | 45.0% |
| GTGACAAAAAGAGCAGTGGA+AGG | + | chr4_3:17473858-17473877 | Msa0632980:CDS | 45.0% | |
| ATAGCACTCGCCATGATCTT+TGG | + | chr4_3:17474185-17474204 | Msa0632980:intron | 45.0% | |
| TCAAGACTAGGTTCGAACCT+AGG | - | chr4_3:17474265-17474284 | None:intergenic | 45.0% | |
| GCTCTTGTATGCTCAAGACT+AGG | - | chr4_3:17474277-17474296 | None:intergenic | 45.0% | |
| TGTGTGCACCATGTATGAGT+TGG | - | chr4_3:17474606-17474625 | None:intergenic | 45.0% | |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | + | chr4_3:17474890-17474909 | Msa0632980:intron | 45.0% |
| ATCATCACATAACTGGGGTC+AGG | + | chr4_3:17475287-17475306 | Msa0632980:intron | 45.0% | |
| TCATCACATAACTGGGGTCA+GGG | + | chr4_3:17475288-17475307 | Msa0632980:intron | 45.0% | |
| GCAGGGACTAAAACCAAAAC+TGG | + | chr4_3:17475363-17475382 | Msa0632980:intron | 45.0% | |
| ! | CCTGCAAAATAGGCCAGTTT+TGG | - | chr4_3:17475439-17475458 | None:intergenic | 45.0% |
| !! | CCAAAACTGGCCTATTTTGC+AGG | + | chr4_3:17475436-17475455 | Msa0632980:intron | 45.0% |
| !! | GGTATTGGTCCCTGCAAAAT+AGG | - | chr4_3:17474890-17474909 | None:intergenic | 45.0% |
| TCAAAAAAGCTCCTGGATGC+TGG | + | chr4_3:17475862-17475881 | Msa0632980:CDS | 45.0% | |
| CAAAAAAGCTCCTGGATGCT+GGG | + | chr4_3:17475863-17475882 | Msa0632980:CDS | 45.0% | |
| !!! | TTTATTTCTTTATTTATTAT+AGG | + | chr4_3:17474405-17474424 | Msa0632980:intron | 5.0% |
| !!! | TTTATTTCTTTATTTATTAT+AGG | + | chr4_3:17474405-17474424 | Msa0632980:intron | 5.0% |
| CATCCATTGGGTGTGCTAGA+TGG | - | chr4_3:17473812-17473831 | None:intergenic | 50.0% | |
| AGGTTCGAACCTAGGACCTT+AGG | - | chr4_3:17474257-17474276 | None:intergenic | 50.0% | |
| CATCCATTGGGTGTGCTAGA+TGG | - | chr4_3:17473812-17473831 | None:intergenic | 50.0% | |
| AGGTTCGAACCTAGGACCTT+AGG | - | chr4_3:17474257-17474276 | None:intergenic | 50.0% | |
| AGAGCAGTGGAAGGAACCCT+AGG | + | chr4_3:17473867-17473886 | Msa0632980:CDS | 55.0% | |
| !! | ATCCATTTGGGTTGCGCGTG+CGG | + | chr4_3:17474323-17474342 | Msa0632980:intron | 55.0% |
| AGAGCAGTGGAAGGAACCCT+AGG | + | chr4_3:17473867-17473886 | Msa0632980:CDS | 55.0% | |
| !! | ATCCATTTGGGTTGCGCGTG+CGG | + | chr4_3:17474323-17474342 | Msa0632980:intron | 55.0% |
| TTCCGCACGCGCAACCCAAA+TGG | - | chr4_3:17474328-17474347 | None:intergenic | 60.0% | |
| TTCCGCACGCGCAACCCAAA+TGG | - | chr4_3:17474328-17474347 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 17473687 | 17475960 | 17473687 | ID=Msa0632980;Name=Msa0632980 |
| chr4_3 | mRNA | 17473687 | 17475960 | 17473687 | ID=Msa0632980-mRNA-1;Parent=Msa0632980;Name=Msa0632980-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|3|0|266 |
| chr4_3 | exon | 17473687 | 17474146 | 17473687 | ID=Msa0632980-mRNA-1:exon:4937;Parent=Msa0632980-mRNA-1 |
| chr4_3 | exon | 17474576 | 17474771 | 17474576 | ID=Msa0632980-mRNA-1:exon:4938;Parent=Msa0632980-mRNA-1 |
| chr4_3 | exon | 17475816 | 17475960 | 17475816 | ID=Msa0632980-mRNA-1:exon:4939;Parent=Msa0632980-mRNA-1 |
| chr4_3 | CDS | 17473687 | 17474146 | 17473687 | ID=Msa0632980-mRNA-1:cds;Parent=Msa0632980-mRNA-1 |
| chr4_3 | CDS | 17474576 | 17474771 | 17474576 | ID=Msa0632980-mRNA-1:cds;Parent=Msa0632980-mRNA-1 |
| chr4_3 | CDS | 17475816 | 17475960 | 17475816 | ID=Msa0632980-mRNA-1:cds;Parent=Msa0632980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
